Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070299.t1 | XP_003600393.1 | 92.7 | 399 | 29 | 0 | 1 | 399 | 1 | 399 | 5.20E-206 | 726.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070299.t1 | P52432 | 42.4 | 370 | 164 | 6 | 42 | 398 | 7 | 340 | 7.9e-70 | 265.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070299.t1 | G7IXS2 | 92.7 | 399 | 29 | 0 | 1 | 399 | 1 | 399 | 3.8e-206 | 726.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05688 | MS.gene070299 | 0.81921 | 1.31E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070299.t1 | MTR_3g060690 | 95.990 | 399 | 16 | 0 | 1 | 399 | 1 | 399 | 0.0 | 770 |
| MS.gene070299.t1 | MTR_4g084150 | 32.198 | 323 | 178 | 9 | 81 | 394 | 5 | 295 | 2.06e-38 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070299.t1 | AT1G60620 | 65.333 | 375 | 115 | 5 | 28 | 399 | 23 | 385 | 3.02e-175 | 494 |
| MS.gene070299.t1 | AT1G60620 | 66.867 | 332 | 95 | 5 | 71 | 399 | 1 | 320 | 3.73e-157 | 446 |
| MS.gene070299.t1 | AT1G60850 | 60.647 | 371 | 129 | 6 | 28 | 394 | 15 | 372 | 4.84e-156 | 445 |
| MS.gene070299.t1 | AT1G60850 | 60.647 | 371 | 129 | 6 | 28 | 394 | 15 | 372 | 4.84e-156 | 445 |
| MS.gene070299.t1 | AT1G60850 | 60.647 | 371 | 129 | 6 | 28 | 394 | 15 | 372 | 4.84e-156 | 445 |
| MS.gene070299.t1 | AT1G60850 | 63.118 | 263 | 90 | 5 | 28 | 286 | 15 | 274 | 5.75e-111 | 327 |
| MS.gene070299.t1 | AT2G15430 | 34.259 | 324 | 168 | 12 | 83 | 394 | 6 | 296 | 8.27e-41 | 147 |
| MS.gene070299.t1 | AT2G15400 | 32.716 | 324 | 173 | 10 | 83 | 394 | 6 | 296 | 1.46e-37 | 138 |
| MS.gene070299.t1 | AT2G15430 | 35.366 | 246 | 124 | 10 | 83 | 316 | 6 | 228 | 4.05e-33 | 124 |
| MS.gene070299.t1 | AT2G15430 | 35.366 | 246 | 124 | 10 | 83 | 316 | 6 | 228 | 5.17e-33 | 124 |
| MS.gene070299.t1 | AT2G15400 | 34.016 | 244 | 126 | 8 | 83 | 314 | 6 | 226 | 9.46e-30 | 115 |
Find 78 sgRNAs with CRISPR-Local
Find 395 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCAGCTCCTTGTAATT+TGG | 0.169473 | 3.3:-48709374 | MS.gene070299:CDS |
| TACTGAAGCTGTGAAGATTC+TGG | 0.313557 | 3.3:-48706999 | MS.gene070299:CDS |
| AAGGGTCAACCTCGTCTTAC+TGG | 0.323513 | 3.3:-48709630 | MS.gene070299:intron |
| TAGGAATGAGACCCAGTCTA+TGG | 0.328096 | 3.3:+48709916 | None:intergenic |
| TTCTAAGTTCATGATGTAAT+CGG | 0.329327 | 3.3:+48712718 | None:intergenic |
| GTATTTGATATAGAAGATAT+TGG | 0.349618 | 3.3:-48707735 | MS.gene070299:CDS |
| TCTGGTGCTTATGCAGCATT+AGG | 0.369089 | 3.3:-48711653 | MS.gene070299:CDS |
| ACCGATACCATACAATATTC+TGG | 0.396142 | 3.3:-48711671 | MS.gene070299:CDS |
| GCTTCAGTAAATAGCACATC+AGG | 0.402965 | 3.3:+48707013 | None:intergenic |
| AGCTAAACTTGGACCTGGTC+AGG | 0.409422 | 3.3:-48709341 | MS.gene070299:intron |
| CGAAGTTCTTTCCCATAGAC+TGG | 0.412442 | 3.3:-48709928 | MS.gene070299:CDS |
| CTAGTTACTATTGAATCAAC+TGG | 0.412801 | 3.3:-48707046 | MS.gene070299:intron |
| TCTATATCAAATACTTTAGC+TGG | 0.413368 | 3.3:+48707744 | None:intergenic |
| ACATTTGCTTACTAGTTCTT+CGG | 0.415942 | 3.3:+48707767 | None:intergenic |
| TGTTGGATCGGCAGCTGATT+TGG | 0.427103 | 3.3:+48709447 | None:intergenic |
| CCCGATCTATTTGAATATCC+AGG | 0.428296 | 3.3:-48709882 | MS.gene070299:intron |
| CGAAAAGCATTGGCAACTGC+TGG | 0.428330 | 3.3:+48711527 | None:intergenic |
| GAAGCGGAAGAAGGCGAAGA+AGG | 0.431432 | 3.3:-48707452 | MS.gene070299:CDS |
| ACCTGGATATTCAAATAGAT+CGG | 0.446131 | 3.3:+48709881 | None:intergenic |
| CTACATGTTCGTTGTGAAAA+GGG | 0.452109 | 3.3:-48709648 | MS.gene070299:CDS |
| ACTACATGTTCGTTGTGAAA+AGG | 0.452260 | 3.3:-48709649 | MS.gene070299:CDS |
| AGATGAGTGGGAAGCGTTGA+AGG | 0.453951 | 3.3:+48712689 | None:intergenic |
| CGCTGAAGTGGTTGCCTCAA+GGG | 0.462430 | 3.3:-48709492 | MS.gene070299:CDS |
| TTTCACAACGAACATGTAGT+TGG | 0.463391 | 3.3:+48709652 | None:intergenic |
| CAAGAACAGAATGGAGGAAG+AGG | 0.471453 | 3.3:-48712746 | MS.gene070299:CDS |
| TGTACTCACGAAAGATGTTA+AGG | 0.487182 | 3.3:-48707799 | MS.gene070299:CDS |
| GACATGGAGTTTGACATGAT+TGG | 0.487643 | 3.3:-48711557 | MS.gene070299:CDS |
| CGATACCAAGCAGTAGCAAC+CGG | 0.487717 | 3.3:+48707936 | None:intergenic |
| CCTGGATATTCAAATAGATC+GGG | 0.490529 | 3.3:+48709882 | None:intergenic |
| TTGGTAAGACACATGCGAAA+TGG | 0.496915 | 3.3:-48707962 | MS.gene070299:CDS |
| GAGAATTCTTCGAAAAGCAT+TGG | 0.497782 | 3.3:+48711517 | None:intergenic |
| ACATCCAAATTACAAGGAGC+TGG | 0.497920 | 3.3:+48709370 | None:intergenic |
| GATGTTATAATAGCTAAACT+TGG | 0.499100 | 3.3:-48709352 | MS.gene070299:CDS |
| AGCGGAAGAAGGCGAAGAAG+GGG | 0.502241 | 3.3:-48707450 | MS.gene070299:CDS |
| GATATAGAAGATATTGGAAG+AGG | 0.503114 | 3.3:-48707729 | MS.gene070299:intron |
| AAGCGGAAGAAGGCGAAGAA+GGG | 0.510724 | 3.3:-48707451 | MS.gene070299:CDS |
| TCTAAGTTCATGATGTAATC+GGG | 0.512453 | 3.3:+48712719 | None:intergenic |
| GCGAGCATGCACTCTGTGTA+GGG | 0.524881 | 3.3:-48707486 | MS.gene070299:CDS |
| AGAGAGAATGTCGTCGTCTG+AGG | 0.528081 | 3.3:-48712798 | None:intergenic |
| GGTCTCCGGTTGCTACTGCT+TGG | 0.528704 | 3.3:-48707941 | MS.gene070299:CDS |
| CTTGAAGCTCACGCTGTCAA+AGG | 0.530488 | 3.3:-48707987 | MS.gene070299:CDS |
| GACACATGCGAAATGGTCTC+CGG | 0.531525 | 3.3:-48707955 | MS.gene070299:CDS |
| ACTCTTTCAATAGCCATGGT+TGG | 0.537705 | 3.3:+48709984 | None:intergenic |
| GAAAGATGTTAAGGATGAGT+TGG | 0.540853 | 3.3:-48707790 | MS.gene070299:CDS |
| ATATACTCTTTCAATAGCCA+TGG | 0.546326 | 3.3:+48709980 | None:intergenic |
| ACCAGAATATTGTATGGTAT+CGG | 0.547904 | 3.3:+48711670 | None:intergenic |
| ATAAGCACCAGAATATTGTA+TGG | 0.550616 | 3.3:+48711664 | None:intergenic |
| TGCATAAGAGAAGCGGAAGA+AGG | 0.551993 | 3.3:-48707461 | MS.gene070299:CDS |
| AGTTGATAACAGTGTACGGT+TGG | 0.555301 | 3.3:-48711630 | MS.gene070299:CDS |
| CGCGAGCATGCACTCTGTGT+AGG | 0.560878 | 3.3:-48707487 | MS.gene070299:CDS |
| ATTGATGAACAAGAACAGAA+TGG | 0.562671 | 3.3:-48712755 | MS.gene070299:CDS |
| GCTCACGCTGTCAAAGGCAT+TGG | 0.566987 | 3.3:-48707981 | MS.gene070299:CDS |
| ACGCTGAAGTGGTTGCCTCA+AGG | 0.568464 | 3.3:-48709493 | MS.gene070299:CDS |
| AGGAATGAGACCCAGTCTAT+GGG | 0.569217 | 3.3:+48709917 | None:intergenic |
| AAAGAAGAATCAAGAAAGCT+CGG | 0.575459 | 3.3:+48706952 | None:intergenic |
| TCGAAGAATTCTCATAGCAG+AGG | 0.583840 | 3.3:-48711507 | MS.gene070299:intron |
| TGAAATCAGATACGCTGAAG+TGG | 0.586218 | 3.3:-48709504 | MS.gene070299:CDS |
| AGATAGATAGTTACATGTTG+AGG | 0.587384 | 3.3:+48712626 | None:intergenic |
| TAGGAGTTGATAACAGTGTA+CGG | 0.591277 | 3.3:-48711634 | MS.gene070299:CDS |
| AGATCGGGATCAGCAGCGAT+AGG | 0.593326 | 3.3:+48709897 | None:intergenic |
| GTCGTCTGAGGATGAATCGA+TGG | 0.596600 | 3.3:-48712786 | MS.gene070299:CDS |
| ACGCATCACGGATGAAGACA+TGG | 0.597126 | 3.3:-48711573 | MS.gene070299:CDS |
| TGAGGATGAATCGATGGCAT+CGG | 0.599176 | 3.3:-48712780 | MS.gene070299:CDS |
| GGGAGTGAGCTTATTGCTGA+AGG | 0.600445 | 3.3:-48709472 | MS.gene070299:CDS |
| CTTCAGTAAATAGCACATCA+GGG | 0.604704 | 3.3:+48707014 | None:intergenic |
| ATTATAACATCCAAATTACA+AGG | 0.606878 | 3.3:+48709364 | None:intergenic |
| GCGGAAGAAGGCGAAGAAGG+GGG | 0.606959 | 3.3:-48707449 | MS.gene070299:CDS |
| GAAGTTCTTTCCCATAGACT+GGG | 0.621696 | 3.3:-48709927 | MS.gene070299:CDS |
| TAGGGAATGCATAAGAGAAG+CGG | 0.637709 | 3.3:-48707468 | MS.gene070299:CDS |
| TTCAGTAAATAGCACATCAG+GGG | 0.644868 | 3.3:+48707015 | None:intergenic |
| ATAATAGCTAAACTTGGACC+TGG | 0.654593 | 3.3:-48709346 | MS.gene070299:CDS |
| GCAATAAGCTCACTCCCTTG+AGG | 0.657191 | 3.3:+48709478 | None:intergenic |
| GATGAACAAGAACAGAATGG+AGG | 0.659810 | 3.3:-48712752 | MS.gene070299:CDS |
| GGTTGAAGTGAAACGCATCA+CGG | 0.668140 | 3.3:-48711585 | MS.gene070299:CDS |
| TCAGTAAATAGCACATCAGG+GGG | 0.676830 | 3.3:+48707016 | None:intergenic |
| TTGGTATCGAATGCTTCCCG+AGG | 0.698025 | 3.3:-48707922 | MS.gene070299:intron |
| TTATAAATAGATGATGCCAG+AGG | 0.706296 | 3.3:-48709705 | MS.gene070299:intron |
| AGTGATTTACCAGTAAGACG+AGG | 0.712738 | 3.3:+48709621 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTCAAATTCAAAATTA+AGG | + | chr3.3:48710648-48710667 | None:intergenic | 10.0% |
| !! | AAATTCAAATTCAAAATTAA+GGG | + | chr3.3:48710647-48710666 | None:intergenic | 10.0% |
| !! | AATAAGAAAAATAATGAAAA+GGG | + | chr3.3:48707170-48707189 | None:intergenic | 10.0% |
| !! | CAACATATATAATTAAATTA+AGG | + | chr3.3:48711063-48711082 | None:intergenic | 10.0% |
| !! | CCAAAAAAAAAAAAAAATTA+TGG | + | chr3.3:48708960-48708979 | None:intergenic | 10.0% |
| !!! | CCATAATTTTTTTTTTTTTT+TGG | - | chr3.3:48708957-48708976 | MS.gene070299:intron | 10.0% |
| !! | AACTAAAAATTGTACAAATT+TGG | - | chr3.3:48712608-48712627 | MS.gene070299:intron | 15.0% |
| !! | ATAAACAAAAGTAATTAACT+TGG | + | chr3.3:48708636-48708655 | None:intergenic | 15.0% |
| !! | ATAAGAAAAATAATGAAAAG+GGG | + | chr3.3:48707169-48707188 | None:intergenic | 15.0% |
| !! | ATTTGATATATTTGTTTGTT+TGG | - | chr3.3:48708017-48708036 | MS.gene070299:intron | 15.0% |
| !! | CATATATAATTAAATTAAGG+AGG | + | chr3.3:48711060-48711079 | None:intergenic | 15.0% |
| !! | CATCTATTTATAATAAAGAA+AGG | + | chr3.3:48710040-48710059 | None:intergenic | 15.0% |
| !! | GAATAAGAAAAATAATGAAA+AGG | + | chr3.3:48707171-48707190 | None:intergenic | 15.0% |
| !! | TAATACTGGTAAAATATATT+AGG | + | chr3.3:48712569-48712588 | None:intergenic | 15.0% |
| !! | TATATCATAAGAACTAAATT+GGG | + | chr3.3:48707487-48707506 | None:intergenic | 15.0% |
| !! | TATATTCAATTAACCTTTAA+TGG | - | chr3.3:48710875-48710894 | MS.gene070299:intron | 15.0% |
| !! | TCTATTTAACAAAAACTTAA+GGG | + | chr3.3:48710796-48710815 | None:intergenic | 15.0% |
| !! | TTATATCATAAGAACTAAAT+TGG | + | chr3.3:48707488-48707507 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTTGAATTTAT+TGG | - | chr3.3:48708312-48708331 | MS.gene070299:intron | 15.0% |
| !!! | ATTGCAAGTTTTAAAATTAT+AGG | - | chr3.3:48711425-48711444 | MS.gene070299:intron | 15.0% |
| !!! | ATTTAACATTATTCATGTTT+TGG | - | chr3.3:48708049-48708068 | MS.gene070299:intron | 15.0% |
| !!! | CTTTTATAATTTTGTCTATT+AGG | + | chr3.3:48708894-48708913 | None:intergenic | 15.0% |
| !!! | TTAGTATTCATAATTTTTTG+TGG | - | chr3.3:48708524-48708543 | MS.gene070299:intron | 15.0% |
| !!! | TTGCAAGTTTTAAAATTATA+GGG | - | chr3.3:48711426-48711445 | MS.gene070299:intron | 15.0% |
| !!! | TTGTTTGAATTTGTTTATTT+GGG | + | chr3.3:48707787-48707806 | None:intergenic | 15.0% |
| !! | AAACATCTATGAAAAGAAAA+CGG | - | chr3.3:48711338-48711357 | MS.gene070299:intron | 20.0% |
| !! | ACAATAGGTAAAATAAAGTT+AGG | - | chr3.3:48707635-48707654 | MS.gene070299:intron | 20.0% |
| !! | ACGAAATTAATGGTATAATT+TGG | - | chr3.3:48709155-48709174 | MS.gene070299:intron | 20.0% |
| !! | AGATATAAAAATCTAACACT+AGG | + | chr3.3:48712073-48712092 | None:intergenic | 20.0% |
| !! | ATTATAACATCCAAATTACA+AGG | + | chr3.3:48710391-48710410 | None:intergenic | 20.0% |
| !! | ATTTATAGAACAAATATGAG+AGG | - | chr3.3:48709029-48709048 | MS.gene070299:intron | 20.0% |
| !! | GACTCATATAAGAATAAAAA+GGG | - | chr3.3:48708425-48708444 | MS.gene070299:intron | 20.0% |
| !! | GGCATATTAAATTAAATTCA+TGG | - | chr3.3:48712398-48712417 | MS.gene070299:intron | 20.0% |
| !! | GTATTTGATATAGAAGATAT+TGG | - | chr3.3:48712017-48712036 | MS.gene070299:intron | 20.0% |
| !! | GTCTATTTAACAAAAACTTA+AGG | + | chr3.3:48710797-48710816 | None:intergenic | 20.0% |
| !! | GTTTATCGAATATTATTTCA+TGG | - | chr3.3:48708650-48708669 | MS.gene070299:intron | 20.0% |
| !! | TACATATCTTAAACTAATAC+TGG | + | chr3.3:48712583-48712602 | None:intergenic | 20.0% |
| !! | TAGCTTCTATAAAAATTTCA+AGG | - | chr3.3:48708146-48708165 | MS.gene070299:intron | 20.0% |
| !! | TATATTTGAGGAAAACTTAT+GGG | - | chr3.3:48711397-48711416 | MS.gene070299:intron | 20.0% |
| !! | TGACTCATATAAGAATAAAA+AGG | - | chr3.3:48708424-48708443 | MS.gene070299:intron | 20.0% |
| !! | TTTATAGAACAAATATGAGA+GGG | - | chr3.3:48709030-48709049 | MS.gene070299:intron | 20.0% |
| !!! | AAATTGTACAAATTTGGTTT+TGG | - | chr3.3:48712614-48712633 | MS.gene070299:intron | 20.0% |
| !!! | AATTGATTTAAGTTCAACAA+TGG | + | chr3.3:48710911-48710930 | None:intergenic | 20.0% |
| !!! | AATTTTCTTCTTGTTAAAAG+TGG | + | chr3.3:48708714-48708733 | None:intergenic | 20.0% |
| !!! | ACCATTAATTTCGTTTTTTT+GGG | + | chr3.3:48709149-48709168 | None:intergenic | 20.0% |
| !!! | AGAATTTTTGAAAAAACTTG+TGG | + | chr3.3:48707841-48707860 | None:intergenic | 20.0% |
| !!! | GTTGTTTGAATTTGTTTATT+TGG | + | chr3.3:48707788-48707807 | None:intergenic | 20.0% |
| !!! | TAAGCTATTTCTATAACAAT+AGG | - | chr3.3:48707620-48707639 | MS.gene070299:intron | 20.0% |
| !!! | TACCATTAATTTCGTTTTTT+TGG | + | chr3.3:48709150-48709169 | None:intergenic | 20.0% |
| !!! | TATAATTTTGTCTATTAGGT+GGG | + | chr3.3:48708890-48708909 | None:intergenic | 20.0% |
| !!! | TGAAAGTGTTTTTTTATGAA+AGG | + | chr3.3:48708933-48708952 | None:intergenic | 20.0% |
| !!! | TGCAAGTTTTAAAATTATAG+GGG | - | chr3.3:48711427-48711446 | MS.gene070299:intron | 20.0% |
| !!! | TTAAAAGTCGTAAATGTTTT+TGG | + | chr3.3:48710331-48710350 | None:intergenic | 20.0% |
| !!! | TTATAATTTTGTCTATTAGG+TGG | + | chr3.3:48708891-48708910 | None:intergenic | 20.0% |
| !!! | TTATGCAATTCTTTTGTTAT+AGG | - | chr3.3:48708588-48708607 | MS.gene070299:intron | 20.0% |
| !!! | TTTATTGGTCGATTTTATTA+AGG | - | chr3.3:48708327-48708346 | MS.gene070299:intron | 20.0% |
| !!! | TTTGAATTTGAATTTTGTGA+AGG | - | chr3.3:48710652-48710671 | MS.gene070299:intron | 20.0% |
| !!! | TTTTTGAAAGATCAATGAAA+TGG | + | chr3.3:48711174-48711193 | None:intergenic | 20.0% |
| ! | AAAACAAATGTGGCTTAATT+GGG | - | chr3.3:48707899-48707918 | MS.gene070299:intron | 25.0% |
| ! | AAATCAATTTAGTAGCACAA+TGG | - | chr3.3:48711283-48711302 | MS.gene070299:intron | 25.0% |
| ! | AATCATTAGGTTAGAGAATT+GGG | + | chr3.3:48709107-48709126 | None:intergenic | 25.0% |
| ! | AATTAAAAAGCCATAACCTA+TGG | + | chr3.3:48711000-48711019 | None:intergenic | 25.0% |
| ! | ACTAAAATTCTTCTATGTTC+AGG | + | chr3.3:48712443-48712462 | None:intergenic | 25.0% |
| ! | AGATCAAGATGATAAATAAC+CGG | - | chr3.3:48712494-48712513 | MS.gene070299:intron | 25.0% |
| ! | AGCTTACAAAAATAGCTTAT+AGG | + | chr3.3:48707566-48707585 | None:intergenic | 25.0% |
| ! | ATAATTAAATTAAGGAGGAG+AGG | + | chr3.3:48711055-48711074 | None:intergenic | 25.0% |
| ! | ATCATCACAGAAAACAAAAT+GGG | + | chr3.3:48708289-48708308 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATCCAAAA+TGG | + | chr3.3:48707439-48707458 | None:intergenic | 25.0% |
| ! | ATTCAATTAACCTTTAATGG+AGG | - | chr3.3:48710878-48710897 | MS.gene070299:intron | 25.0% |
| ! | ATTTAACAAAAACTTAAGGG+AGG | + | chr3.3:48710793-48710812 | None:intergenic | 25.0% |
| ! | CAACTATGATATTCAGTAAT+AGG | + | chr3.3:48711716-48711735 | None:intergenic | 25.0% |
| ! | CAATAATCTGTATAAGAACT+CGG | + | chr3.3:48712640-48712659 | None:intergenic | 25.0% |
| ! | CATGTACAAATTCTTTCTAT+TGG | - | chr3.3:48707989-48708008 | MS.gene070299:CDS | 25.0% |
| ! | CGTTGAAAAAAATACTTCAT+TGG | + | chr3.3:48712469-48712488 | None:intergenic | 25.0% |
| ! | GATGTTATAATAGCTAAACT+TGG | - | chr3.3:48710400-48710419 | MS.gene070299:intron | 25.0% |
| ! | GTATATTTGAGGAAAACTTA+TGG | - | chr3.3:48711396-48711415 | MS.gene070299:intron | 25.0% |
| ! | GTCATTTACATAAAGTTCAA+GGG | - | chr3.3:48711458-48711477 | MS.gene070299:intron | 25.0% |
| ! | TAAAACAAATGTGGCTTAAT+TGG | - | chr3.3:48707898-48707917 | MS.gene070299:intron | 25.0% |
| ! | TACAAATTCTTTCTATTGGT+GGG | - | chr3.3:48707993-48708012 | MS.gene070299:CDS | 25.0% |
| ! | TACTAATTACAAGTTTGCAT+TGG | + | chr3.3:48711661-48711680 | None:intergenic | 25.0% |
| ! | TCCCAAAAAAACGAAATTAA+TGG | - | chr3.3:48709145-48709164 | MS.gene070299:intron | 25.0% |
| ! | TCTATATCAAATACTTTAGC+TGG | + | chr3.3:48712011-48712030 | None:intergenic | 25.0% |
| ! | TGGTGTTTAATTGAATCATT+AGG | + | chr3.3:48709120-48709139 | None:intergenic | 25.0% |
| ! | TTAAATTTGTAATAAGCCAG+AGG | - | chr3.3:48708763-48708782 | MS.gene070299:intron | 25.0% |
| ! | TTATAGGATGTATTGTTTCA+TGG | - | chr3.3:48708604-48708623 | MS.gene070299:intron | 25.0% |
| ! | TTCTAAGTTCATGATGTAAT+CGG | + | chr3.3:48707037-48707056 | None:intergenic | 25.0% |
| ! | TTCTATGCACATAACATTAA+GGG | - | chr3.3:48710693-48710712 | MS.gene070299:intron | 25.0% |
| ! | TTGTGTGATAAATGGAAAAT+TGG | - | chr3.3:48709950-48709969 | MS.gene070299:CDS | 25.0% |
| ! | TTTCATTTGTAAGTATTACG+TGG | - | chr3.3:48712377-48712396 | MS.gene070299:intron | 25.0% |
| ! | TTTCTATGCACATAACATTA+AGG | - | chr3.3:48710692-48710711 | MS.gene070299:intron | 25.0% |
| ! | TTTGAATTTGTCAAAATCAC+CGG | + | chr3.3:48712516-48712535 | None:intergenic | 25.0% |
| !! | TGCTACTAAATTGATTTCTA+AGG | + | chr3.3:48711280-48711299 | None:intergenic | 25.0% |
| !! | TGTCATTTACATAAAGTTCA+AGG | - | chr3.3:48711457-48711476 | MS.gene070299:intron | 25.0% |
| !! | TTATTTAGAACGCAAACATT+AGG | - | chr3.3:48708460-48708479 | MS.gene070299:intron | 25.0% |
| !!! | AACAGTTTGACTTCATTTTA+TGG | + | chr3.3:48707528-48707547 | None:intergenic | 25.0% |
| !!! | AGTGTAAGTTTTAAAACTAG+AGG | + | chr3.3:48710768-48710787 | None:intergenic | 25.0% |
| !!! | AGTTAGAAACTTTTCTGAAA+TGG | + | chr3.3:48707268-48707287 | None:intergenic | 25.0% |
| !!! | ATAAGCTATTTTTGTAAGCT+AGG | - | chr3.3:48707566-48707585 | MS.gene070299:intron | 25.0% |
| !!! | GCAAGTTTTAAAATTATAGG+GGG | - | chr3.3:48711428-48711447 | MS.gene070299:intron | 25.0% |
| !!! | GTGTAAGTTTTAAAACTAGA+GGG | + | chr3.3:48710767-48710786 | None:intergenic | 25.0% |
| !!! | GTTAGAAACTTTTCTGAAAT+GGG | + | chr3.3:48707267-48707286 | None:intergenic | 25.0% |
| !!! | TGTAAGTTTTAAAACTAGAG+GGG | + | chr3.3:48710766-48710785 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGTAAGCTTATTG+TGG | - | chr3.3:48707365-48707384 | MS.gene070299:intron | 25.0% |
| !!! | TTTGAATTTTGTGAAGGTAT+AGG | - | chr3.3:48710658-48710677 | MS.gene070299:intron | 25.0% |
| AAAGTTTCTAACTTCGCAAT+TGG | - | chr3.3:48707275-48707294 | MS.gene070299:intron | 30.0% | |
| AAGTAACAGAGTTAATAGCA+AGG | - | chr3.3:48711364-48711383 | MS.gene070299:intron | 30.0% | |
| AAGTTTCTAACTTCGCAATT+GGG | - | chr3.3:48707276-48707295 | MS.gene070299:intron | 30.0% | |
| AATAAAAGGCCAAAATTCAC+TGG | + | chr3.3:48708490-48708509 | None:intergenic | 30.0% | |
| ACAAATTCAAACAACCACAT+AGG | - | chr3.3:48707793-48707812 | MS.gene070299:CDS | 30.0% | |
| ACCAGAAGATAAGATCAAAT+AGG | - | chr3.3:48707874-48707893 | MS.gene070299:intron | 30.0% | |
| ACCAGAATATTGTATGGTAT+CGG | + | chr3.3:48708085-48708104 | None:intergenic | 30.0% | |
| ACCTGGATATTCAAATAGAT+CGG | + | chr3.3:48709874-48709893 | None:intergenic | 30.0% | |
| ACGATGACGTAAAATCAATT+TGG | + | chr3.3:48712131-48712150 | None:intergenic | 30.0% | |
| AGATAGATAGTTACATGTTG+AGG | + | chr3.3:48707129-48707148 | None:intergenic | 30.0% | |
| AGGAAAAGTGAGAATGAAAT+GGG | + | chr3.3:48711035-48711054 | None:intergenic | 30.0% | |
| AGTAACAGAGTTAATAGCAA+GGG | - | chr3.3:48711365-48711384 | MS.gene070299:intron | 30.0% | |
| ATAAGCACCAGAATATTGTA+TGG | + | chr3.3:48708091-48708110 | None:intergenic | 30.0% | |
| ATAGAAAAGAAACAGAGAGA+AGG | + | chr3.3:48710444-48710463 | None:intergenic | 30.0% | |
| ATAGTGTAGTTTAAGCCTAA+TGG | - | chr3.3:48709692-48709711 | MS.gene070299:CDS | 30.0% | |
| ATATACTCTTTCAATAGCCA+TGG | + | chr3.3:48709775-48709794 | None:intergenic | 30.0% | |
| ATATATGTTATTCCCTACCT+CGG | + | chr3.3:48711850-48711869 | None:intergenic | 30.0% | |
| ATTAAGGGACAAATACATGT+TGG | + | chr3.3:48710632-48710651 | None:intergenic | 30.0% | |
| ATTCAAGAAACCATAGGTTA+TGG | - | chr3.3:48710987-48711006 | MS.gene070299:intron | 30.0% | |
| ATTGATGAACAAGAACAGAA+TGG | - | chr3.3:48706997-48707016 | MS.gene070299:CDS | 30.0% | |
| ATTTACATAAAGTTCAAGGG+AGG | - | chr3.3:48711461-48711480 | MS.gene070299:intron | 30.0% | |
| CAAATAGGCTAAAACAAATG+TGG | - | chr3.3:48707889-48707908 | MS.gene070299:intron | 30.0% | |
| CAAGAAGAAAATTTGCAACA+AGG | - | chr3.3:48708721-48708740 | MS.gene070299:intron | 30.0% | |
| CACACATGTAAGATATTTCA+AGG | + | chr3.3:48712671-48712690 | None:intergenic | 30.0% | |
| CATCATCACAGAAAACAAAA+TGG | + | chr3.3:48708290-48708309 | None:intergenic | 30.0% | |
| CTAGTTACTATTGAATCAAC+TGG | - | chr3.3:48712706-48712725 | MS.gene070299:CDS | 30.0% | |
| GAATCATTAGGTTAGAGAAT+TGG | + | chr3.3:48709108-48709127 | None:intergenic | 30.0% | |
| GATATAGAAGATATTGGAAG+AGG | - | chr3.3:48712023-48712042 | MS.gene070299:intron | 30.0% | |
| GATCAATGAAATGGAATTGA+CGG | + | chr3.3:48711165-48711184 | None:intergenic | 30.0% | |
| GTACAAATTCTTTCTATTGG+TGG | - | chr3.3:48707992-48708011 | MS.gene070299:CDS | 30.0% | |
| TAATACCACGTTAGTATGTT+CGG | - | chr3.3:48708552-48708571 | MS.gene070299:intron | 30.0% | |
| TAGAAAAGAAACAGAGAGAA+GGG | + | chr3.3:48710443-48710462 | None:intergenic | 30.0% | |
| TATATGTTGCACTCAGATTA+TGG | - | chr3.3:48711074-48711093 | MS.gene070299:intron | 30.0% | |
| TATTGTAATATCACCAGACA+AGG | + | chr3.3:48710216-48710235 | None:intergenic | 30.0% | |
| TCATCACAGAAAACAAAATG+GGG | + | chr3.3:48708288-48708307 | None:intergenic | 30.0% | |
| TCTAAGTTCATGATGTAATC+GGG | + | chr3.3:48707036-48707055 | None:intergenic | 30.0% | |
| TGACTTTCTTGTGTGATAAA+TGG | - | chr3.3:48709942-48709961 | MS.gene070299:CDS | 30.0% | |
| TGTAAGATATTTCAAGGAGT+TGG | + | chr3.3:48712665-48712684 | None:intergenic | 30.0% | |
| TTACAATTTCAGAGAAGAAG+AGG | - | chr3.3:48709072-48709091 | MS.gene070299:intron | 30.0% | |
| TTATAAATAGATGATGCCAG+AGG | - | chr3.3:48710047-48710066 | MS.gene070299:intron | 30.0% | |
| ! | ACATTTGCTTACTAGTTCTT+CGG | + | chr3.3:48711988-48712007 | None:intergenic | 30.0% |
| ! | ACTCTGTTTTGTATCATAGA+AGG | - | chr3.3:48707335-48707354 | MS.gene070299:intron | 30.0% |
| ! | ACTTTGGAAGGATTATGATT+AGG | - | chr3.3:48707300-48707319 | MS.gene070299:intron | 30.0% |
| ! | CGTTCTAAATAATCAGTTGA+AGG | + | chr3.3:48708452-48708471 | None:intergenic | 30.0% |
| ! | GAAATAATATGCGTGTTGTT+TGG | - | chr3.3:48709972-48709991 | MS.gene070299:CDS | 30.0% |
| ! | TACAACTTCCAGTTTTCTAT+AGG | + | chr3.3:48711693-48711712 | None:intergenic | 30.0% |
| ! | TATCCAACCTTTTCTATACA+AGG | + | chr3.3:48710006-48710025 | None:intergenic | 30.0% |
| ! | TGATTTAAGTTCAACAATGG+AGG | + | chr3.3:48710908-48710927 | None:intergenic | 30.0% |
| ! | TGCTAAACACATGCTTTTAT+AGG | - | chr3.3:48711734-48711753 | MS.gene070299:intron | 30.0% |
| ! | TGGTTAATATAGCTCCATTT+TGG | - | chr3.3:48707422-48707441 | MS.gene070299:CDS | 30.0% |
| ! | TTAGGATAACCAGTGAATTT+TGG | - | chr3.3:48708478-48708497 | MS.gene070299:intron | 30.0% |
| ! | TTCTGTGATGATGTCATATT+TGG | - | chr3.3:48708297-48708316 | MS.gene070299:intron | 30.0% |
| !! | AAGTTTGCTATTAATCCAAC+AGG | - | chr3.3:48710541-48710560 | MS.gene070299:intron | 30.0% |
| !! | AATAGCAAACTTGCTAAGAT+AGG | + | chr3.3:48710533-48710552 | None:intergenic | 30.0% |
| !! | ATAGCAAACTTGCTAAGATA+GGG | + | chr3.3:48710532-48710551 | None:intergenic | 30.0% |
| !! | ATGCTTTGCTTTTATTCTCT+AGG | - | chr3.3:48711929-48711948 | MS.gene070299:intron | 30.0% |
| !! | ATTAACAGTGTTGATAGCAA+AGG | + | chr3.3:48710828-48710847 | None:intergenic | 30.0% |
| !! | GCTATTTTCATAAGCTATCT+TGG | - | chr3.3:48707679-48707698 | MS.gene070299:intron | 30.0% |
| !! | GTTTGACTTCATTTTATGGT+CGG | + | chr3.3:48707524-48707543 | None:intergenic | 30.0% |
| !! | TATAATTTGGCCTTTTCAAG+TGG | - | chr3.3:48709168-48709187 | MS.gene070299:intron | 30.0% |
| !! | TGAATTTTGGCCTTTTATTG+AGG | - | chr3.3:48708491-48708510 | MS.gene070299:intron | 30.0% |
| !!! | AAATGTTTTTGGTGTTGGAT+CGG | + | chr3.3:48710320-48710339 | None:intergenic | 30.0% |
| !!! | ATAATTTTAGGTTCCAACCA+TGG | - | chr3.3:48709755-48709774 | MS.gene070299:intron | 30.0% |
| !!! | GTAAGTTTTAAAACTAGAGG+GGG | + | chr3.3:48710765-48710784 | None:intergenic | 30.0% |
| !!! | TTTTGAAGTTCAAGATGAGT+GGG | + | chr3.3:48707078-48707097 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTTCAAGATGAG+TGG | + | chr3.3:48707079-48707098 | None:intergenic | 30.0% |
| AAAAGAGAAAGCCAAAGAGA+TGG | + | chr3.3:48712186-48712205 | None:intergenic | 35.0% | |
| AAAATCTGATTACCGCCATT+AGG | + | chr3.3:48709710-48709729 | None:intergenic | 35.0% | |
| AAAGAGAAAGCCAAAGAGAT+GGG | + | chr3.3:48712185-48712204 | None:intergenic | 35.0% | |
| AAATCCAGCTCCTTGTAATT+TGG | - | chr3.3:48710378-48710397 | MS.gene070299:intron | 35.0% | |
| AACAAGATACAGAGAGAAGA+CGG | + | chr3.3:48707942-48707961 | None:intergenic | 35.0% | |
| AATACCACGTTAGTATGTTC+GGG | - | chr3.3:48708553-48708572 | MS.gene070299:intron | 35.0% | |
| ACAATAATACCTCACCATCA+TGG | + | chr3.3:48712108-48712127 | None:intergenic | 35.0% | |
| ACACTAAGGAAGTAAACTGT+AGG | - | chr3.3:48710472-48710491 | MS.gene070299:intron | 35.0% | |
| ACAGTTTACTTCCTTAGTGT+GGG | + | chr3.3:48710472-48710491 | None:intergenic | 35.0% | |
| ACCGATACCATACAATATTC+TGG | - | chr3.3:48708081-48708100 | MS.gene070299:intron | 35.0% | |
| ACTACATGTTCGTTGTGAAA+AGG | - | chr3.3:48710103-48710122 | MS.gene070299:intron | 35.0% | |
| ACTCCTTGTATAGAAAAGGT+TGG | - | chr3.3:48710000-48710019 | MS.gene070299:intron | 35.0% | |
| AGAAAAGAAACAGAGAGAAG+GGG | + | chr3.3:48710442-48710461 | None:intergenic | 35.0% | |
| AGTGTCTTGATTGTTTGTCT+CGG | - | chr3.3:48712543-48712562 | MS.gene070299:intron | 35.0% | |
| ATAATAGCTAAACTTGGACC+TGG | - | chr3.3:48710406-48710425 | MS.gene070299:intron | 35.0% | |
| ATCACAGAAAACAAAATGGG+GGG | + | chr3.3:48708286-48708305 | None:intergenic | 35.0% | |
| ATTTGAGGAAAACTTATGGG+AGG | - | chr3.3:48711400-48711419 | MS.gene070299:intron | 35.0% | |
| CAATCATGTAAGTGTTAGTG+TGG | + | chr3.3:48709904-48709923 | None:intergenic | 35.0% | |
| CATCACAGAAAACAAAATGG+GGG | + | chr3.3:48708287-48708306 | None:intergenic | 35.0% | |
| CCAAACATTCAAGAAACCAT+AGG | - | chr3.3:48710981-48711000 | MS.gene070299:intron | 35.0% | |
| CCTATGGTTTCTTGAATGTT+TGG | + | chr3.3:48710984-48711003 | None:intergenic | 35.0% | |
| CCTGGATATTCAAATAGATC+GGG | + | chr3.3:48709873-48709892 | None:intergenic | 35.0% | |
| CTACATGTTCGTTGTGAAAA+GGG | - | chr3.3:48710104-48710123 | MS.gene070299:intron | 35.0% | |
| CTTCAGTAAATAGCACATCA+GGG | + | chr3.3:48712741-48712760 | None:intergenic | 35.0% | |
| CTTGTTAAAAGTGGCACATT+GGG | + | chr3.3:48708705-48708724 | None:intergenic | 35.0% | |
| GAAAGATGTTAAGGATGAGT+TGG | - | chr3.3:48711962-48711981 | MS.gene070299:intron | 35.0% | |
| GAGAGTAAGCATCAATGAAA+TGG | + | chr3.3:48711208-48711227 | None:intergenic | 35.0% | |
| GAGGAAAAGTGAGAATGAAA+TGG | + | chr3.3:48711036-48711055 | None:intergenic | 35.0% | |
| GCCTATTTGATCTTATCTTC+TGG | + | chr3.3:48707878-48707897 | None:intergenic | 35.0% | |
| GGAAAAGTGAGAATGAAATG+GGG | + | chr3.3:48711034-48711053 | None:intergenic | 35.0% | |
| GGAATTGACGGTTTAAAGAA+AGG | + | chr3.3:48711153-48711172 | None:intergenic | 35.0% | |
| GGGAGCTATTTGTATATTTG+AGG | - | chr3.3:48711385-48711404 | MS.gene070299:intron | 35.0% | |
| GTTAGTGTGGATATAAAACC+TGG | + | chr3.3:48709891-48709910 | None:intergenic | 35.0% | |
| TACAGTTTACTTCCTTAGTG+TGG | + | chr3.3:48710473-48710492 | None:intergenic | 35.0% | |
| TATATGTTATTCCCTACCTC+GGG | + | chr3.3:48711849-48711868 | None:intergenic | 35.0% | |
| TCAATTTAGTAGCACAATGG+TGG | - | chr3.3:48711286-48711305 | MS.gene070299:intron | 35.0% | |
| TCTTGTTAAAAGTGGCACAT+TGG | + | chr3.3:48708706-48708725 | None:intergenic | 35.0% | |
| TGTAACATGTTATGCATAGC+AGG | + | chr3.3:48709557-48709576 | None:intergenic | 35.0% | |
| TGTACTCACGAAAGATGTTA+AGG | - | chr3.3:48711953-48711972 | MS.gene070299:intron | 35.0% | |
| TGTTGGAGATAGATTTAGCT+TGG | + | chr3.3:48710615-48710634 | None:intergenic | 35.0% | |
| TTCAGTAAATAGCACATCAG+GGG | + | chr3.3:48712740-48712759 | None:intergenic | 35.0% | |
| TTTCACAACGAACATGTAGT+TGG | + | chr3.3:48710103-48710122 | None:intergenic | 35.0% | |
| ! | AACTTCCAGTTTTCTATAGG+AGG | + | chr3.3:48711690-48711709 | None:intergenic | 35.0% |
| ! | ATTACAAGGAGCTGGATTTT+TGG | + | chr3.3:48710377-48710396 | None:intergenic | 35.0% |
| ! | CATTAATCTTGATAGCCTGT+TGG | + | chr3.3:48710559-48710578 | None:intergenic | 35.0% |
| ! | CTTTTCATTGTTTTCACCTC+TGG | + | chr3.3:48710066-48710085 | None:intergenic | 35.0% |
| ! | GAGAATTCTTCGAAAAGCAT+TGG | + | chr3.3:48708238-48708257 | None:intergenic | 35.0% |
| !! | ATAATATGCGTGTTGTTTGG+TGG | - | chr3.3:48709975-48709994 | MS.gene070299:CDS | 35.0% |
| !! | ATTTTGGCCTTTTATTGAGG+TGG | - | chr3.3:48708494-48708513 | MS.gene070299:intron | 35.0% |
| !! | CGATTTTGACAACCATGAAT+AGG | + | chr3.3:48708797-48708816 | None:intergenic | 35.0% |
| !! | CTTTCTGTTTTGAACCATGA+TGG | - | chr3.3:48712091-48712110 | MS.gene070299:intron | 35.0% |
| !! | GAATTTTGTGAAGGTATAGG+TGG | - | chr3.3:48710661-48710680 | MS.gene070299:intron | 35.0% |
| !! | GCTGGATTTTTGGAGAATTT+AGG | + | chr3.3:48710367-48710386 | None:intergenic | 35.0% |
| !! | TAGGAGTTGATAACAGTGTA+CGG | - | chr3.3:48708118-48708137 | MS.gene070299:intron | 35.0% |
| !! | TTTCGCTGATTTGATTGTTG+TGG | - | chr3.3:48712206-48712225 | MS.gene070299:intron | 35.0% |
| !!! | GTCGTAAATGTTTTTGGTGT+TGG | + | chr3.3:48710325-48710344 | None:intergenic | 35.0% |
| !!! | TGAAGTTGATGTGCTTGTTT+TGG | - | chr3.3:48707402-48707421 | MS.gene070299:CDS | 35.0% |
| !!! | TGTCATTTTCATAGACCTCA+GGG | + | chr3.3:48710736-48710755 | None:intergenic | 35.0% |
| !!! | TTCGTTTTTTTGGGACTTGT+TGG | + | chr3.3:48709140-48709159 | None:intergenic | 35.0% |
| AAAAGAAACAGAGAGAAGGG+GGG | + | chr3.3:48710440-48710459 | None:intergenic | 40.0% | |
| AACTTCGCAATTGGGTACTT+TGG | - | chr3.3:48707284-48707303 | MS.gene070299:intron | 40.0% | |
| ACATCCAAATTACAAGGAGC+TGG | + | chr3.3:48710385-48710404 | None:intergenic | 40.0% | |
| ACCACTTCCACCTCAATAAA+AGG | + | chr3.3:48708504-48708523 | None:intergenic | 40.0% | |
| ACTCTTTCAATAGCCATGGT+TGG | + | chr3.3:48709771-48709790 | None:intergenic | 40.0% | |
| ACTGTAGGTCTAATGAACTC+AGG | - | chr3.3:48710487-48710506 | MS.gene070299:intron | 40.0% | |
| AGATCCCACTAAAGATCGTT+GGG | - | chr3.3:48708817-48708836 | MS.gene070299:intron | 40.0% | |
| AGTGATTTACCAGTAAGACG+AGG | + | chr3.3:48710134-48710153 | None:intergenic | 40.0% | |
| ATACCCCAACGATCTTTAGT+GGG | + | chr3.3:48708824-48708843 | None:intergenic | 40.0% | |
| ATCGCAAGATCGTATGATCT+TGG | - | chr3.3:48709417-48709436 | MS.gene070299:CDS | 40.0% | |
| CAAAGCATACACAGATGTCA+GGG | + | chr3.3:48711917-48711936 | None:intergenic | 40.0% | |
| CAGAGAGAAGACGGAAATAA+AGG | + | chr3.3:48707933-48707952 | None:intergenic | 40.0% | |
| CAGCTATTTAACTCCTTGTC+TGG | - | chr3.3:48710200-48710219 | MS.gene070299:intron | 40.0% | |
| CATGTCCTCCTATAGAAAAC+TGG | - | chr3.3:48711682-48711701 | MS.gene070299:intron | 40.0% | |
| CCCGATCTATTTGAATATCC+AGG | - | chr3.3:48709870-48709889 | MS.gene070299:intron | 40.0% | |
| GAAAAGAAACAGAGAGAAGG+GGG | + | chr3.3:48710441-48710460 | None:intergenic | 40.0% | |
| GAACTCAGGAACTAGAAAAC+AGG | - | chr3.3:48710501-48710520 | MS.gene070299:intron | 40.0% | |
| GAAGTTCTTTCCCATAGACT+GGG | - | chr3.3:48709825-48709844 | MS.gene070299:intron | 40.0% | |
| GACATGGAGTTTGACATGAT+TGG | - | chr3.3:48708195-48708214 | MS.gene070299:intron | 40.0% | |
| GATGAACAAGAACAGAATGG+AGG | - | chr3.3:48707000-48707019 | MS.gene070299:CDS | 40.0% | |
| GCTTCAGTAAATAGCACATC+AGG | + | chr3.3:48712742-48712761 | None:intergenic | 40.0% | |
| GGACACTCCTTGTATAGAAA+AGG | - | chr3.3:48709996-48710015 | MS.gene070299:intron | 40.0% | |
| GTGTAGTTTAAGCCTAATGG+CGG | - | chr3.3:48709695-48709714 | MS.gene070299:CDS | 40.0% | |
| GTTTATTTGGGCTTGTGAGA+CGG | + | chr3.3:48707775-48707794 | None:intergenic | 40.0% | |
| TACTGAAGCTGTGAAGATTC+TGG | - | chr3.3:48712753-48712772 | MS.gene070299:CDS | 40.0% | |
| TAGATCGTAGGATCGTAACA+AGG | - | chr3.3:48708854-48708873 | MS.gene070299:intron | 40.0% | |
| TAGGGAATGCATAAGAGAAG+CGG | - | chr3.3:48712284-48712303 | MS.gene070299:intron | 40.0% | |
| TATACCCCAACGATCTTTAG+TGG | + | chr3.3:48708825-48708844 | None:intergenic | 40.0% | |
| TCAGTAAATAGCACATCAGG+GGG | + | chr3.3:48712739-48712758 | None:intergenic | 40.0% | |
| TCGAAGAATTCTCATAGCAG+AGG | - | chr3.3:48708245-48708264 | MS.gene070299:intron | 40.0% | |
| TCGCAAGATCGTATGATCTT+GGG | - | chr3.3:48709418-48709437 | MS.gene070299:CDS | 40.0% | |
| TGAAATCAGATACGCTGAAG+TGG | - | chr3.3:48710248-48710267 | MS.gene070299:intron | 40.0% | |
| TGGTCAAAACACTCGTATCA+AGG | + | chr3.3:48711641-48711660 | None:intergenic | 40.0% | |
| TTCTATTACCACCCACACTA+AGG | - | chr3.3:48710458-48710477 | MS.gene070299:intron | 40.0% | |
| TTGACAACCATGAATAGGAC+TGG | + | chr3.3:48708792-48708811 | None:intergenic | 40.0% | |
| TTGATTGTTGTGGTGTGCAT+AGG | - | chr3.3:48712216-48712235 | MS.gene070299:intron | 40.0% | |
| TTGGTAAGACACATGCGAAA+TGG | - | chr3.3:48711790-48711809 | MS.gene070299:intron | 40.0% | |
| ! | ATAGAAAGAGCGTAGATCGT+AGG | - | chr3.3:48708842-48708861 | MS.gene070299:intron | 40.0% |
| ! | TGGAGGTTTTCCTCCATTAA+AGG | + | chr3.3:48710891-48710910 | None:intergenic | 40.0% |
| ! | TTCTGCGATGGTTTTCAACT+CGG | + | chr3.3:48709288-48709307 | None:intergenic | 40.0% |
| ! | TTTGTGAAGGTATAGGTGGA+CGG | - | chr3.3:48710665-48710684 | MS.gene070299:intron | 40.0% |
| !! | AACAGTGTTGATAGCAAAGG+AGG | + | chr3.3:48710825-48710844 | None:intergenic | 40.0% |
| !! | AGATTTAGCTTGGTAGAGCT+AGG | + | chr3.3:48710605-48710624 | None:intergenic | 40.0% |
| !! | AGTTGATAACAGTGTACGGT+TGG | - | chr3.3:48708122-48708141 | MS.gene070299:intron | 40.0% |
| !! | ATGAGAACTGAGAAGTGTTC+AGG | - | chr3.3:48708996-48709015 | MS.gene070299:intron | 40.0% |
| !! | GAAGCTGTTTTCAACCTATG+TGG | + | chr3.3:48707810-48707829 | None:intergenic | 40.0% |
| !! | GATCGCGATTTTAACAACCT+TGG | - | chr3.3:48709446-48709465 | MS.gene070299:CDS | 40.0% |
| !! | GTCATTTTCATAGACCTCAG+GGG | + | chr3.3:48710735-48710754 | None:intergenic | 40.0% |
| !! | TGTTTTGAACCATGATGGTG+AGG | - | chr3.3:48712096-48712115 | MS.gene070299:intron | 40.0% |
| !! | TTTGCACGTTGACTTCAAGT+CGG | - | chr3.3:48709608-48709627 | MS.gene070299:intron | 40.0% |
| !!! | GTGTCATTTTCATAGACCTC+AGG | + | chr3.3:48710737-48710756 | None:intergenic | 40.0% |
| !!! | TTGGCCTTTTCAAGTGGAAA+CGG | - | chr3.3:48709174-48709193 | MS.gene070299:intron | 40.0% |
| AAAGCGGTAGATCGCAGAAT+CGG | + | chr3.3:48709325-48709344 | None:intergenic | 45.0% | |
| AATACACCCGCATAGACTCA+TGG | + | chr3.3:48711607-48711626 | None:intergenic | 45.0% | |
| AATTACATTCACCTCCCCTG+AGG | - | chr3.3:48710718-48710737 | MS.gene070299:intron | 45.0% | |
| ACAACCTTGGTCCTATTGCA+TGG | - | chr3.3:48709459-48709478 | MS.gene070299:CDS | 45.0% | |
| ACAGAAAACAAAATGGGGGG+TGG | + | chr3.3:48708283-48708302 | None:intergenic | 45.0% | |
| AGACCCGTTTCCACTTGAAA+AGG | + | chr3.3:48709181-48709200 | None:intergenic | 45.0% | |
| AGGAATGAGACCCAGTCTAT+GGG | + | chr3.3:48709838-48709857 | None:intergenic | 45.0% | |
| ATACGATCTTGCGATTCCGA+TGG | + | chr3.3:48709412-48709431 | None:intergenic | 45.0% | |
| ATCTCAAGCTCCCATCTCTT+TGG | - | chr3.3:48712172-48712191 | MS.gene070299:intron | 45.0% | |
| CAAGAACAGAATGGAGGAAG+AGG | - | chr3.3:48707006-48707025 | MS.gene070299:CDS | 45.0% | |
| CAGCATGGATTTGAACGGTT+CGG | + | chr3.3:48709212-48709231 | None:intergenic | 45.0% | |
| CATAGGCAGAAAAAAGGCTG+TGG | - | chr3.3:48712233-48712252 | MS.gene070299:intron | 45.0% | |
| CATTCCCGAACATACTAACG+TGG | + | chr3.3:48708560-48708579 | None:intergenic | 45.0% | |
| CGAAGTTCTTTCCCATAGAC+TGG | - | chr3.3:48709824-48709843 | MS.gene070299:intron | 45.0% | |
| GAGATCCCACTAAAGATCGT+TGG | - | chr3.3:48708816-48708835 | MS.gene070299:intron | 45.0% | |
| GATCCCACTAAAGATCGTTG+GGG | - | chr3.3:48708818-48708837 | MS.gene070299:intron | 45.0% | |
| GCAAAGCATACACAGATGTC+AGG | + | chr3.3:48711918-48711937 | None:intergenic | 45.0% | |
| GGCATCTGCATAAACTCAAC+TGG | + | chr3.3:48711586-48711605 | None:intergenic | 45.0% | |
| GGTAAAGCCGTAAAGCCATT+GGG | + | chr3.3:48711565-48711584 | None:intergenic | 45.0% | |
| GGTGTGCATAGGCAGAAAAA+AGG | - | chr3.3:48712227-48712246 | MS.gene070299:intron | 45.0% | |
| GGTTGAAGTGAAACGCATCA+CGG | - | chr3.3:48708167-48708186 | MS.gene070299:intron | 45.0% | |
| GTAAAGCCGTAAAGCCATTG+GGG | + | chr3.3:48711564-48711583 | None:intergenic | 45.0% | |
| GTTTACTTCCTTAGTGTGGG+TGG | + | chr3.3:48710469-48710488 | None:intergenic | 45.0% | |
| TAAAGCCGTAAAGCCATTGG+GGG | + | chr3.3:48711563-48711582 | None:intergenic | 45.0% | |
| TAGGAATGAGACCCAGTCTA+TGG | + | chr3.3:48709839-48709858 | None:intergenic | 45.0% | |
| TATCCCTCTCTCCATGCAAT+AGG | + | chr3.3:48709473-48709492 | None:intergenic | 45.0% | |
| TCGCAATTGGGTACTTTGGA+AGG | - | chr3.3:48707288-48707307 | MS.gene070299:intron | 45.0% | |
| TCTGGTGCTTATGCAGCATT+AGG | - | chr3.3:48708099-48708118 | MS.gene070299:intron | 45.0% | |
| TGAGGATGAATCGATGGCAT+CGG | - | chr3.3:48706972-48706991 | MS.gene070299:CDS | 45.0% | |
| TGCATAAGAGAAGCGGAAGA+AGG | - | chr3.3:48712291-48712310 | MS.gene070299:intron | 45.0% | |
| TGCCTATCAGCTGCAAAACA+GGG | + | chr3.3:48707592-48707611 | None:intergenic | 45.0% | |
| TGGTAAAGCCGTAAAGCCAT+TGG | + | chr3.3:48711566-48711585 | None:intergenic | 45.0% | |
| TGTGTTAAGTACTCCCCCAA+TGG | - | chr3.3:48711547-48711566 | MS.gene070299:CDS | 45.0% | |
| ! | ATTTTCATAGACCTCAGGGG+AGG | + | chr3.3:48710732-48710751 | None:intergenic | 45.0% |
| ! | GCCTTTTATTGAGGTGGAAG+TGG | - | chr3.3:48708500-48708519 | MS.gene070299:intron | 45.0% |
| ! | TCTGCGATGGTTTTCAACTC+GGG | + | chr3.3:48709287-48709306 | None:intergenic | 45.0% |
| !! | CAGGAGTAGTTCTAGTATGC+GGG | + | chr3.3:48709538-48709557 | None:intergenic | 45.0% |
| !! | GCAGGAGTAGTTCTAGTATG+CGG | + | chr3.3:48709539-48709558 | None:intergenic | 45.0% |
| !!! | TGGCCTTTTCAAGTGGAAAC+GGG | - | chr3.3:48709175-48709194 | MS.gene070299:intron | 45.0% |
| !! | AAAAAAATAGTAAAATTTAA+AGG | + | chr3.3:48707216-48707235 | None:intergenic | 5.0% |
| !! | TAAAATTATAAAAATGATAA+AGG | + | chr3.3:48709744-48709763 | None:intergenic | 5.0% |
| !!! | TTTATCATTTTTATAATTTT+AGG | - | chr3.3:48709743-48709762 | MS.gene070299:intron | 5.0% |
| AAGCGGAAGAAGGCGAAGAA+GGG | - | chr3.3:48712301-48712320 | MS.gene070299:intron | 50.0% | |
| AAGGGGGAGAAGGGGAAAAA+TGG | - | chr3.3:48712319-48712338 | MS.gene070299:intron | 50.0% | |
| AAGGGTCAACCTCGTCTTAC+TGG | - | chr3.3:48710122-48710141 | MS.gene070299:intron | 50.0% | |
| ACGCATCACGGATGAAGACA+TGG | - | chr3.3:48708179-48708198 | MS.gene070299:intron | 50.0% | |
| AGCTAAACTTGGACCTGGTC+AGG | - | chr3.3:48710411-48710430 | MS.gene070299:intron | 50.0% | |
| ATCGAATGCTTCCCGAGGTA+GGG | - | chr3.3:48711835-48711854 | MS.gene070299:intron | 50.0% | |
| ATCTTCAACCCGCTCCAGAT+CGG | - | chr3.3:48709380-48709399 | MS.gene070299:CDS | 50.0% | |
| CAGATGCCATGAGTCTATGC+GGG | - | chr3.3:48711598-48711617 | MS.gene070299:CDS | 50.0% | |
| CCGTCCAGCATGGATTTGAA+CGG | + | chr3.3:48709217-48709236 | None:intergenic | 50.0% | |
| CCGTTCAAATCCATGCTGGA+CGG | - | chr3.3:48709214-48709233 | MS.gene070299:intron | 50.0% | |
| CGAACCGTTCAAATCCATGC+TGG | - | chr3.3:48709210-48709229 | MS.gene070299:intron | 50.0% | |
| CGATACCAAGCAGTAGCAAC+CGG | + | chr3.3:48711819-48711838 | None:intergenic | 50.0% | |
| CTCTCCATGCAATAGGACCA+AGG | + | chr3.3:48709466-48709485 | None:intergenic | 50.0% | |
| CTTGAAGCTCACGCTGTCAA+AGG | - | chr3.3:48711765-48711784 | MS.gene070299:intron | 50.0% | |
| GACACATGCGAAATGGTCTC+CGG | - | chr3.3:48711797-48711816 | MS.gene070299:intron | 50.0% | |
| GAGGAGTCCAGTCCTATTCA+TGG | - | chr3.3:48708782-48708801 | MS.gene070299:intron | 50.0% | |
| GCAATAAGCTCACTCCCTTG+AGG | + | chr3.3:48710277-48710296 | None:intergenic | 50.0% | |
| GCAGATGCCATGAGTCTATG+CGG | - | chr3.3:48711597-48711616 | MS.gene070299:CDS | 50.0% | |
| GGGAGTGAGCTTATTGCTGA+AGG | - | chr3.3:48710280-48710299 | MS.gene070299:intron | 50.0% | |
| GGGTTGAAGATCGGAAACGA+CGG | + | chr3.3:48709371-48709390 | None:intergenic | 50.0% | |
| GGTCCTATTGCATGGAGAGA+GGG | - | chr3.3:48709467-48709486 | MS.gene070299:CDS | 50.0% | |
| GTCGTCTGAGGATGAATCGA+TGG | - | chr3.3:48706966-48706985 | MS.gene070299:CDS | 50.0% | |
| GTGCCTATCAGCTGCAAAAC+AGG | + | chr3.3:48707593-48707612 | None:intergenic | 50.0% | |
| TATCGAATGCTTCCCGAGGT+AGG | - | chr3.3:48711834-48711853 | MS.gene070299:intron | 50.0% | |
| TGAATAGGACTGGACTCCTC+TGG | + | chr3.3:48708782-48708801 | None:intergenic | 50.0% | |
| TGGTCCTATTGCATGGAGAG+AGG | - | chr3.3:48709466-48709485 | MS.gene070299:CDS | 50.0% | |
| TGTTGGATCGGCAGCTGATT+TGG | + | chr3.3:48710308-48710327 | None:intergenic | 50.0% | |
| TTGAAGATCGGAAACGACGG+CGG | + | chr3.3:48709368-48709387 | None:intergenic | 50.0% | |
| TTGGGCTTGTGAGACGGTTT+GGG | + | chr3.3:48707769-48707788 | None:intergenic | 50.0% | |
| TTTGGGCTTGTGAGACGGTT+TGG | + | chr3.3:48707770-48707789 | None:intergenic | 50.0% | |
| ! | CTTCTCTGCGTTTTCTGCGA+TGG | + | chr3.3:48709300-48709319 | None:intergenic | 50.0% |
| ! | GTACTCCCCCAATGGCTTTA+CGG | - | chr3.3:48711555-48711574 | MS.gene070299:CDS | 50.0% |
| ! | TTGGTATCGAATGCTTCCCG+AGG | - | chr3.3:48711830-48711849 | MS.gene070299:intron | 50.0% |
| !! | AGATGAGTGGGAAGCGTTGA+AGG | + | chr3.3:48707066-48707085 | None:intergenic | 50.0% |
| !! | ATCTGGAGCGGGTTGAAGAT+CGG | + | chr3.3:48709380-48709399 | None:intergenic | 50.0% |
| !! | CGAAAAGCATTGGCAACTGC+TGG | + | chr3.3:48708228-48708247 | None:intergenic | 50.0% |
| !! | TGCGATCTACCGCTTTTCCT+CGG | - | chr3.3:48709329-48709348 | MS.gene070299:intron | 50.0% |
| AAATCCATGCTGGACGGAGC+TGG | - | chr3.3:48709220-48709239 | MS.gene070299:intron | 55.0% | |
| AAGGCGAAGAAGGGGGAGAA+GGG | - | chr3.3:48712310-48712329 | MS.gene070299:intron | 55.0% | |
| AATCCATGCTGGACGGAGCT+GGG | - | chr3.3:48709221-48709240 | MS.gene070299:intron | 55.0% | |
| ACGCTGAAGTGGTTGCCTCA+AGG | - | chr3.3:48710259-48710278 | MS.gene070299:intron | 55.0% | |
| AGATCGGGATCAGCAGCGAT+AGG | + | chr3.3:48709858-48709877 | None:intergenic | 55.0% | |
| AGCGGAAGAAGGCGAAGAAG+GGG | - | chr3.3:48712302-48712321 | MS.gene070299:intron | 55.0% | |
| CGCTGAAGTGGTTGCCTCAA+GGG | - | chr3.3:48710260-48710279 | MS.gene070299:intron | 55.0% | |
| GAAGCGGAAGAAGGCGAAGA+AGG | - | chr3.3:48712300-48712319 | MS.gene070299:intron | 55.0% | |
| GCGAGCATGCACTCTGTGTA+GGG | - | chr3.3:48712266-48712285 | MS.gene070299:intron | 55.0% | |
| GGTCAAACCCGAGTCGGATT+GGG | - | chr3.3:48709242-48709261 | MS.gene070299:intron | 55.0% | |
| ! | AAACCCGAGTCGGATTGGGT+CGG | - | chr3.3:48709246-48709265 | MS.gene070299:intron | 55.0% |
| ! | GCTCACGCTGTCAAAGGCAT+TGG | - | chr3.3:48711771-48711790 | MS.gene070299:intron | 55.0% |
| ! | GGCCCTGTTTTGCAGCTGAT+AGG | - | chr3.3:48707587-48707606 | MS.gene070299:intron | 55.0% |
| AGAAGGGGGGTTACCTGACC+AGG | + | chr3.3:48710427-48710446 | None:intergenic | 60.0% | |
| AGGCGAAGAAGGGGGAGAAG+GGG | - | chr3.3:48712311-48712330 | MS.gene070299:intron | 60.0% | |
| CGCGAGCATGCACTCTGTGT+AGG | - | chr3.3:48712265-48712284 | MS.gene070299:intron | 60.0% | |
| GAAGGCGAAGAAGGGGGAGA+AGG | - | chr3.3:48712309-48712328 | MS.gene070299:intron | 60.0% | |
| GAGCTGGGTCAAACCCGAGT+CGG | - | chr3.3:48709236-48709255 | MS.gene070299:intron | 60.0% | |
| GCGGAAGAAGGCGAAGAAGG+GGG | - | chr3.3:48712303-48712322 | MS.gene070299:intron | 60.0% | |
| GGGTCAAACCCGAGTCGGAT+TGG | - | chr3.3:48709241-48709260 | MS.gene070299:intron | 60.0% | |
| GGTCTCCGGTTGCTACTGCT+TGG | - | chr3.3:48711811-48711830 | MS.gene070299:intron | 60.0% | |
| TGACCCGACCCAATCCGACT+CGG | + | chr3.3:48709253-48709272 | None:intergenic | 60.0% | |
| TTCAACCCGCTCCAGATCGG+TGG | - | chr3.3:48709383-48709402 | MS.gene070299:CDS | 60.0% | |
| ! | AACCCGAGTCGGATTGGGTC+GGG | - | chr3.3:48709247-48709266 | MS.gene070299:intron | 60.0% |
| ! | TCCAGATCGGTGGTGGCCAT+CGG | - | chr3.3:48709393-48709412 | MS.gene070299:CDS | 60.0% |
| AACCCGCTCCAGATCGGTGG+TGG | - | chr3.3:48709386-48709405 | MS.gene070299:CDS | 65.0% | |
| GACCCGACCCAATCCGACTC+GGG | + | chr3.3:48709252-48709271 | None:intergenic | 65.0% | |
| GATCGGAAACGACGGCGGAG+CGG | + | chr3.3:48709363-48709382 | None:intergenic | 65.0% | |
| TCCGATGGCCACCACCGATC+TGG | + | chr3.3:48709397-48709416 | None:intergenic | 65.0% | |
| TGACCCAGCTCCGTCCAGCA+TGG | + | chr3.3:48709227-48709246 | None:intergenic | 65.0% | |
| TGGCCACCACCGATCTGGAG+CGG | + | chr3.3:48709392-48709411 | None:intergenic | 65.0% | |
| GACGGCGCGCCGAGGAAAAG+CGG | + | chr3.3:48709341-48709360 | None:intergenic | 70.0% | |
| GGAAACGACGGCGGAGCGGA+CGG | + | chr3.3:48709359-48709378 | None:intergenic | 70.0% | |
| ! | GGCCACCACCGATCTGGAGC+GGG | + | chr3.3:48709391-48709410 | None:intergenic | 70.0% |
| ! | GCGGAGCGGACGGCGCGCCG+AGG | + | chr3.3:48709349-48709368 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48706961 | 48712813 | 48706961 | ID=MS.gene070299 |
| chr3.3 | mRNA | 48706961 | 48712813 | 48706961 | ID=MS.gene070299.t1;Parent=MS.gene070299 |
| chr3.3 | exon | 48712640 | 48712813 | 48712640 | ID=MS.gene070299.t1.exon1;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48712640 | 48712813 | 48712640 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48711508 | 48711693 | 48711508 | ID=MS.gene070299.t1.exon2;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48711508 | 48711693 | 48711508 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48709883 | 48710009 | 48709883 | ID=MS.gene070299.t1.exon3;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48709883 | 48710009 | 48709883 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48709631 | 48709717 | 48709631 | ID=MS.gene070299.t1.exon4;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48709631 | 48709717 | 48709631 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48709342 | 48709526 | 48709342 | ID=MS.gene070299.t1.exon5;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48709342 | 48709526 | 48709342 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48707923 | 48708018 | 48707923 | ID=MS.gene070299.t1.exon6;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48707923 | 48708018 | 48707923 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48707730 | 48707823 | 48707730 | ID=MS.gene070299.t1.exon7;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48707730 | 48707823 | 48707730 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48707390 | 48707536 | 48707390 | ID=MS.gene070299.t1.exon8;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48707390 | 48707536 | 48707390 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| chr3.3 | exon | 48706961 | 48707064 | 48706961 | ID=MS.gene070299.t1.exon9;Parent=MS.gene070299.t1 |
| chr3.3 | CDS | 48706961 | 48707064 | 48706961 | ID=cds.MS.gene070299.t1;Parent=MS.gene070299.t1 |
| Gene Sequence |
| Protein sequence |
