Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04335.t1 | XP_003600393.1 | 93 | 399 | 28 | 0 | 1 | 399 | 1 | 399 | 1.40E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04335.t1 | P52432 | 42.4 | 370 | 164 | 6 | 42 | 398 | 7 | 340 | 7.9e-70 | 265.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04335.t1 | G7IXS2 | 93.0 | 399 | 28 | 0 | 1 | 399 | 1 | 399 | 9.9e-207 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46015 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene39636 | PPI |
| MS.gene04335 | MS.gene08465 | PPI |
| MS.gene04335 | MS.gene05688 | PPI |
| MS.gene24295 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene64653 | PPI |
| MS.gene26777 | MS.gene04335 | PPI |
| MS.gene43180 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene04160 | PPI |
| MS.gene04335 | MS.gene65249 | PPI |
| MS.gene04335 | MS.gene68633 | PPI |
| MS.gene04335 | MS.gene95440 | PPI |
| MS.gene049824 | MS.gene04335 | PPI |
| MS.gene022098 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene064140 | PPI |
| MS.gene94781 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene030166 | PPI |
| MS.gene055112 | MS.gene04335 | PPI |
| MS.gene84578 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene049822 | PPI |
| MS.gene04335 | MS.gene051008 | PPI |
| MS.gene04335 | MS.gene81051 | PPI |
| MS.gene004127 | MS.gene04335 | PPI |
| MS.gene070299 | MS.gene04335 | PPI |
| MS.gene053492 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene27326 | PPI |
| MS.gene26950 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene97308 | PPI |
| MS.gene28944 | MS.gene04335 | PPI |
| MS.gene04335 | MS.gene047813 | PPI |
| MS.gene26516 | MS.gene04335 | PPI |
| MS.gene004126 | MS.gene04335 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04335.t1 | MTR_3g060690 | 96.241 | 399 | 15 | 0 | 1 | 399 | 1 | 399 | 0.0 | 792 |
| MS.gene04335.t1 | MTR_4g084150 | 32.198 | 323 | 178 | 8 | 81 | 394 | 5 | 295 | 3.99e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04335.t1 | AT1G60620 | 65.333 | 375 | 115 | 5 | 28 | 399 | 23 | 385 | 1.11e-174 | 493 |
| MS.gene04335.t1 | AT1G60620 | 66.867 | 332 | 95 | 5 | 71 | 399 | 1 | 320 | 8.47e-157 | 444 |
| MS.gene04335.t1 | AT1G60850 | 60.647 | 371 | 129 | 6 | 28 | 394 | 15 | 372 | 6.79e-156 | 444 |
| MS.gene04335.t1 | AT1G60850 | 60.647 | 371 | 129 | 6 | 28 | 394 | 15 | 372 | 6.79e-156 | 444 |
| MS.gene04335.t1 | AT1G60850 | 60.647 | 371 | 129 | 6 | 28 | 394 | 15 | 372 | 6.79e-156 | 444 |
| MS.gene04335.t1 | AT1G60850 | 63.118 | 263 | 90 | 5 | 28 | 286 | 15 | 274 | 6.56e-111 | 327 |
| MS.gene04335.t1 | AT2G15430 | 34.259 | 324 | 168 | 12 | 83 | 394 | 6 | 296 | 4.66e-41 | 148 |
| MS.gene04335.t1 | AT2G15400 | 32.716 | 324 | 173 | 10 | 83 | 394 | 6 | 296 | 1.77e-37 | 138 |
| MS.gene04335.t1 | AT2G15430 | 35.366 | 246 | 124 | 10 | 83 | 316 | 6 | 228 | 5.30e-33 | 124 |
| MS.gene04335.t1 | AT2G15430 | 35.366 | 246 | 124 | 10 | 83 | 316 | 6 | 228 | 5.67e-33 | 124 |
| MS.gene04335.t1 | AT2G15400 | 34.016 | 244 | 126 | 8 | 83 | 314 | 6 | 226 | 1.09e-29 | 115 |
Find 77 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCAGCTCCTTGTAATT+TGG | 0.169473 | 3.4:-56372107 | MS.gene04335:CDS |
| TACTGAAGCTGTTAAGATTC+TGG | 0.255130 | 3.4:-56370539 | MS.gene04335:CDS |
| TAGGAATGAGACCCAGTCTA+TGG | 0.328096 | 3.4:+56372649 | None:intergenic |
| TTCTAAGTTCATGATGTAAT+CGG | 0.329327 | 3.4:+56375208 | None:intergenic |
| GTATTTGATATAGAAGATAT+TGG | 0.349618 | 3.4:-56371275 | MS.gene04335:CDS |
| TCTGGTGCTTATGCAGCATT+AGG | 0.369089 | 3.4:-56374126 | MS.gene04335:CDS |
| AAGGGTCAACCTCGTCTTAC+CGG | 0.370642 | 3.4:-56372363 | MS.gene04335:intron |
| ACTGATACCATACAATATTC+TGG | 0.382224 | 3.4:-56374144 | MS.gene04335:CDS |
| CGCTGAAGTGGTTGCCTCAC+GGG | 0.397476 | 3.4:-56372225 | MS.gene04335:CDS |
| GCTTCAGTAAATAGCACATC+AGG | 0.402965 | 3.4:+56370553 | None:intergenic |
| AGCTAAACTTGGACCTGGTC+AGG | 0.409422 | 3.4:-56372074 | MS.gene04335:intron |
| CGAAGTTCTTTCCCATAGAC+TGG | 0.412442 | 3.4:-56372661 | MS.gene04335:CDS |
| CTAGTTACTATTGAATCAAC+TGG | 0.412801 | 3.4:-56370586 | MS.gene04335:intron |
| TCTATATCAAATACTTTAGC+TGG | 0.413368 | 3.4:+56371284 | None:intergenic |
| ACATTTGCTTACTAGTTCTT+CGG | 0.415942 | 3.4:+56371307 | None:intergenic |
| TGTTGGATCGGCAGCTGATT+TGG | 0.427103 | 3.4:+56372180 | None:intergenic |
| CCCGATCTATTTGAATATCC+AGG | 0.428296 | 3.4:-56372615 | MS.gene04335:intron |
| CGAAAAGCATTGGCAACTGC+TGG | 0.428330 | 3.4:+56374000 | None:intergenic |
| GAAGCGGAAGAAGGCGAAGA+AGG | 0.431432 | 3.4:-56370992 | MS.gene04335:CDS |
| ACCTGGATATTCAAATAGAT+CGG | 0.446131 | 3.4:+56372614 | None:intergenic |
| CTACATGTTCGTTGTGAAAA+GGG | 0.452109 | 3.4:-56372381 | MS.gene04335:CDS |
| ACTACATGTTCGTTGTGAAA+AGG | 0.452260 | 3.4:-56372382 | MS.gene04335:CDS |
| AGATGAGTGGGAAGCGTTGA+AGG | 0.453951 | 3.4:+56375179 | None:intergenic |
| TTTCACAACGAACATGTAGT+TGG | 0.463391 | 3.4:+56372385 | None:intergenic |
| CAAGAACAGAATGGAGGAAG+AGG | 0.471453 | 3.4:-56375236 | MS.gene04335:CDS |
| TGTACTCACGAAAGATGTTA+AGG | 0.487182 | 3.4:-56371339 | MS.gene04335:CDS |
| GACATGGAGTTTGACATGAT+TGG | 0.487643 | 3.4:-56374030 | MS.gene04335:CDS |
| CGATACCAAGCAGTAGCAAC+CGG | 0.487717 | 3.4:+56371474 | None:intergenic |
| CCTGGATATTCAAATAGATC+GGG | 0.490529 | 3.4:+56372615 | None:intergenic |
| TTGGTAAGACACATGCGAAA+TGG | 0.496915 | 3.4:-56371500 | MS.gene04335:CDS |
| GAGAATTCTTCGAAAAGCAT+TGG | 0.497782 | 3.4:+56373990 | None:intergenic |
| ACATCCAAATTACAAGGAGC+TGG | 0.497920 | 3.4:+56372103 | None:intergenic |
| GATGTTATAATAGCTAAACT+TGG | 0.499100 | 3.4:-56372085 | MS.gene04335:CDS |
| AGCGGAAGAAGGCGAAGAAG+GGG | 0.502241 | 3.4:-56370990 | MS.gene04335:CDS |
| GATATAGAAGATATTGGAAG+AGG | 0.503114 | 3.4:-56371269 | MS.gene04335:intron |
| AAGCGGAAGAAGGCGAAGAA+GGG | 0.510724 | 3.4:-56370991 | MS.gene04335:CDS |
| TCTAAGTTCATGATGTAATC+GGG | 0.512453 | 3.4:+56375209 | None:intergenic |
| GCGAGCATGCACTCTGTGTA+GGG | 0.524881 | 3.4:-56371026 | MS.gene04335:CDS |
| AGAGAGAATGTCGTCGTCTG+AGG | 0.528081 | 3.4:-56375288 | None:intergenic |
| GGTCTCCGGTTGCTACTGCT+TGG | 0.528704 | 3.4:-56371479 | MS.gene04335:CDS |
| CTTGAAGCTCACGCTGTCAA+AGG | 0.530488 | 3.4:-56371525 | MS.gene04335:CDS |
| GACACATGCGAAATGGTCTC+CGG | 0.531525 | 3.4:-56371493 | MS.gene04335:CDS |
| ACTCTTTCAATAGCCATGGT+TGG | 0.537705 | 3.4:+56372717 | None:intergenic |
| GAAAGATGTTAAGGATGAGT+TGG | 0.540853 | 3.4:-56371330 | MS.gene04335:CDS |
| ATATACTCTTTCAATAGCCA+TGG | 0.546326 | 3.4:+56372713 | None:intergenic |
| ATAAGCACCAGAATATTGTA+TGG | 0.550616 | 3.4:+56374137 | None:intergenic |
| TGCATAAGAGAAGCGGAAGA+AGG | 0.551993 | 3.4:-56371001 | MS.gene04335:CDS |
| AGTTGATAACAGTGTACGGT+TGG | 0.555301 | 3.4:-56374103 | MS.gene04335:CDS |
| CGCGAGCATGCACTCTGTGT+AGG | 0.560878 | 3.4:-56371027 | MS.gene04335:CDS |
| ATTGATGAACAAGAACAGAA+TGG | 0.562671 | 3.4:-56375245 | MS.gene04335:CDS |
| GCTCACGCTGTCAAAGGCAT+TGG | 0.566987 | 3.4:-56371519 | MS.gene04335:CDS |
| AGGAATGAGACCCAGTCTAT+GGG | 0.569217 | 3.4:+56372650 | None:intergenic |
| AAAGAAGAATCAAGAAAGCT+CGG | 0.575459 | 3.4:+56370492 | None:intergenic |
| TCGAAGAATTCTCATAGCAG+AGG | 0.583840 | 3.4:-56373980 | MS.gene04335:intron |
| ACGCTGAAGTGGTTGCCTCA+CGG | 0.585260 | 3.4:-56372226 | MS.gene04335:CDS |
| TGAAATCAGATACGCTGAAG+TGG | 0.586218 | 3.4:-56372237 | MS.gene04335:CDS |
| AGATAGATAGTTACATGTTG+AGG | 0.587384 | 3.4:+56375116 | None:intergenic |
| TAGGAGTTGATAACAGTGTA+CGG | 0.591277 | 3.4:-56374107 | MS.gene04335:CDS |
| AGATCGGGATCAGCAGCGAT+AGG | 0.593326 | 3.4:+56372630 | None:intergenic |
| GTCGTCTGAGGATGAATCGA+TGG | 0.596600 | 3.4:-56375276 | MS.gene04335:CDS |
| ACGCATCACGGATGAAGACA+TGG | 0.597126 | 3.4:-56374046 | MS.gene04335:CDS |
| TGAGGATGAATCGATGGCAT+CGG | 0.599176 | 3.4:-56375270 | MS.gene04335:CDS |
| CTTCAGTAAATAGCACATCA+GGG | 0.604704 | 3.4:+56370554 | None:intergenic |
| ATTATAACATCCAAATTACA+AGG | 0.606878 | 3.4:+56372097 | None:intergenic |
| GCGGAAGAAGGCGAAGAAGG+GGG | 0.606959 | 3.4:-56370989 | MS.gene04335:CDS |
| GGGAGTGAGCTTATTGCTGA+AGG | 0.617271 | 3.4:-56372205 | MS.gene04335:CDS |
| GAAGTTCTTTCCCATAGACT+GGG | 0.621696 | 3.4:-56372660 | MS.gene04335:CDS |
| TAGGGAATGCATAAGAGAAG+CGG | 0.637709 | 3.4:-56371008 | MS.gene04335:CDS |
| TTCAGTAAATAGCACATCAG+GGG | 0.644868 | 3.4:+56370555 | None:intergenic |
| ATAATAGCTAAACTTGGACC+TGG | 0.654593 | 3.4:-56372079 | MS.gene04335:CDS |
| GATGAACAAGAACAGAATGG+AGG | 0.659810 | 3.4:-56375242 | MS.gene04335:CDS |
| GGTTGAAGTGAAACGCATCA+CGG | 0.668140 | 3.4:-56374058 | MS.gene04335:CDS |
| AGTGATTTACCGGTAAGACG+AGG | 0.686274 | 3.4:+56372354 | None:intergenic |
| TCAGTAAATAGCACATCAGG+GGG | 0.690486 | 3.4:+56370556 | None:intergenic |
| TTGGTATCGAATGCTTCCCG+AGG | 0.698025 | 3.4:-56371460 | MS.gene04335:intron |
| TTATAAATAGATGATGCCAG+AGG | 0.706296 | 3.4:-56372438 | MS.gene04335:intron |
| GCAATAAGCTCACTCCCGTG+AGG | 0.725849 | 3.4:+56372211 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTCAAATTCAAAATTA+AGG | + | chr3.4:56373945-56373964 | None:intergenic | 10.0% |
| !! | AAATTCAAATTCAAAATTAA+GGG | + | chr3.4:56373944-56373963 | None:intergenic | 10.0% |
| !! | AATAAGAAAAATAATGAAAA+GGG | + | chr3.4:56370710-56370729 | None:intergenic | 10.0% |
| !! | TAAAATTATAAAAACGATAA+AGG | + | chr3.4:56373041-56373060 | None:intergenic | 10.0% |
| !!! | TTTATCGTTTTTATAATTTT+AGG | - | chr3.4:56373040-56373059 | MS.gene04335:intron | 10.0% |
| !! | AACTAAAAATTGTACAAATT+TGG | - | chr3.4:56375098-56375117 | MS.gene04335:intron | 15.0% |
| !! | ATAAGAAAAATAATGAAAAG+GGG | + | chr3.4:56370709-56370728 | None:intergenic | 15.0% |
| !! | ATTTGATATATTTGTTTGTT+CGG | - | chr3.4:56371574-56371593 | MS.gene04335:intron | 15.0% |
| !! | CATCTATTTATAATAAAGAA+AGG | + | chr3.4:56373337-56373356 | None:intergenic | 15.0% |
| !! | GAATAAGAAAAATAATGAAA+AGG | + | chr3.4:56370711-56370730 | None:intergenic | 15.0% |
| !! | TATATCATAAGAACTAAATT+GGG | + | chr3.4:56371024-56371043 | None:intergenic | 15.0% |
| !! | TGAAATTTATAGAACAAATA+AGG | - | chr3.4:56372327-56372346 | MS.gene04335:intron | 15.0% |
| !! | TTATATCATAAGAACTAAAT+TGG | + | chr3.4:56371025-56371044 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTTGAATTTAT+CGG | - | chr3.4:56371869-56371888 | MS.gene04335:intron | 15.0% |
| !!! | ATTTAACATTATTCATGTTT+TGG | - | chr3.4:56371606-56371625 | MS.gene04335:intron | 15.0% |
| !!! | CTTTTATAATTTTGTCTATT+AGG | + | chr3.4:56372195-56372214 | None:intergenic | 15.0% |
| !!! | TTGTTTGAATTTGTTTATTT+GGG | + | chr3.4:56371344-56371363 | None:intergenic | 15.0% |
| !! | ACAATAGGTAAAATAAAGTT+AGG | - | chr3.4:56371194-56371213 | MS.gene04335:intron | 20.0% |
| !! | ACGAAATTAATGGTATAATT+TGG | - | chr3.4:56372461-56372480 | MS.gene04335:intron | 20.0% |
| !! | ACTATACAGCTTATATATAT+AGG | - | chr3.4:56371125-56371144 | MS.gene04335:intron | 20.0% |
| !! | AGATATAAAAATCTAACACT+AGG | + | chr3.4:56374563-56374582 | None:intergenic | 20.0% |
| !! | ATTATAACATCCAAATTACA+AGG | + | chr3.4:56373688-56373707 | None:intergenic | 20.0% |
| !! | GGCATATTAAATTAAATTCA+TGG | - | chr3.4:56374888-56374907 | MS.gene04335:intron | 20.0% |
| !! | GTATTTGATATAGAAGATAT+TGG | - | chr3.4:56374507-56374526 | MS.gene04335:intron | 20.0% |
| !! | GTTTATCGAATATTATTTCA+TGG | - | chr3.4:56371950-56371969 | MS.gene04335:intron | 20.0% |
| !! | TACATATCTTAAACTAATAC+TGG | + | chr3.4:56375073-56375092 | None:intergenic | 20.0% |
| !! | TAGCTTCTATAAAAATTTCA+AGG | - | chr3.4:56371703-56371722 | MS.gene04335:intron | 20.0% |
| !!! | AAATTGTACAAATTTGGTTT+TGG | - | chr3.4:56375104-56375123 | MS.gene04335:intron | 20.0% |
| !!! | AATTTTCTTCTTGTTAAAAG+TGG | + | chr3.4:56372014-56372033 | None:intergenic | 20.0% |
| !!! | ACCATTAATTTCGTTTTTTT+GGG | + | chr3.4:56372455-56372474 | None:intergenic | 20.0% |
| !!! | AGAATTTTTGAAAAAACTTG+TGG | + | chr3.4:56371398-56371417 | None:intergenic | 20.0% |
| !!! | GTTGTTTGAATTTGTTTATT+TGG | + | chr3.4:56371345-56371364 | None:intergenic | 20.0% |
| !!! | TAAGCTATTTCTATAACAAT+AGG | - | chr3.4:56371179-56371198 | MS.gene04335:intron | 20.0% |
| !!! | TACCATTAATTTCGTTTTTT+TGG | + | chr3.4:56372456-56372475 | None:intergenic | 20.0% |
| !!! | TATAATTTTGTCTATTAGGT+GGG | + | chr3.4:56372191-56372210 | None:intergenic | 20.0% |
| !!! | TGAAAGTGTTTTTTTATGAA+AGG | + | chr3.4:56372234-56372253 | None:intergenic | 20.0% |
| !!! | TTAAAAGTCGTAAATGTTTT+TGG | + | chr3.4:56373628-56373647 | None:intergenic | 20.0% |
| !!! | TTATAATTTTGTCTATTAGG+TGG | + | chr3.4:56372192-56372211 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGTAAGCTTATTA+TGG | - | chr3.4:56370905-56370924 | MS.gene04335:intron | 20.0% |
| !!! | TTTGAATTTGAATTTTGTGA+AGG | - | chr3.4:56373949-56373968 | MS.gene04335:intron | 20.0% |
| ! | AATACAAATGTGGCTTAATT+GGG | - | chr3.4:56371456-56371475 | MS.gene04335:intron | 25.0% |
| ! | AATCATTAGGTTAGAGAATT+GGG | + | chr3.4:56372413-56372432 | None:intergenic | 25.0% |
| ! | ACTAAAATTCTTCTATGTTC+AGG | + | chr3.4:56374933-56374952 | None:intergenic | 25.0% |
| ! | AGATCAAGATGATAAATAAC+CGG | - | chr3.4:56374984-56375003 | MS.gene04335:intron | 25.0% |
| ! | AGCTTACAAAAATAGCTTAT+AGG | + | chr3.4:56371103-56371122 | None:intergenic | 25.0% |
| ! | ATCATCACAGAAAACAAAAT+GGG | + | chr3.4:56371846-56371865 | None:intergenic | 25.0% |
| ! | ATCTTGAACTTCAAAAAACT+CGG | - | chr3.4:56370622-56370641 | MS.gene04335:intron | 25.0% |
| ! | ATTAAGCTGTTTATCCAAAA+TGG | + | chr3.4:56370979-56370998 | None:intergenic | 25.0% |
| ! | CAATAATCTGTATAAGAACT+CGG | + | chr3.4:56375130-56375149 | None:intergenic | 25.0% |
| ! | CATGTACAAATTCTTTCTAT+TGG | - | chr3.4:56371546-56371565 | MS.gene04335:intron | 25.0% |
| ! | CGTTGAAATAAATACTTCAT+TGG | + | chr3.4:56374959-56374978 | None:intergenic | 25.0% |
| ! | GATGTTATAATAGCTAAACT+TGG | - | chr3.4:56373697-56373716 | MS.gene04335:intron | 25.0% |
| ! | TAATACAAATGTGGCTTAAT+TGG | - | chr3.4:56371455-56371474 | MS.gene04335:intron | 25.0% |
| ! | TACAAATTCTTTCTATTGGT+GGG | - | chr3.4:56371550-56371569 | MS.gene04335:intron | 25.0% |
| ! | TACTAATTACAAGTTTGCAT+TGG | + | chr3.4:56374153-56374172 | None:intergenic | 25.0% |
| ! | TCCCAAAAAAACGAAATTAA+TGG | - | chr3.4:56372451-56372470 | MS.gene04335:intron | 25.0% |
| ! | TGGTGTTTAATTGAATCATT+AGG | + | chr3.4:56372426-56372445 | None:intergenic | 25.0% |
| ! | TTAAATTTGTAATAAGCCAG+AGG | - | chr3.4:56372064-56372083 | MS.gene04335:intron | 25.0% |
| ! | TTCTAAGTTCATGATGTAAT+CGG | + | chr3.4:56370577-56370596 | None:intergenic | 25.0% |
| ! | TTGTGTGATAAATGGAAAAT+TGG | - | chr3.4:56373247-56373266 | MS.gene04335:intron | 25.0% |
| ! | TTTCATTTGTAAGTATTACG+TGG | - | chr3.4:56374867-56374886 | MS.gene04335:intron | 25.0% |
| ! | TTTGAATTTGTCAAAATCAC+CGG | + | chr3.4:56375006-56375025 | None:intergenic | 25.0% |
| !!! | AACAGTTTGACTTCATTTTA+TGG | + | chr3.4:56371065-56371084 | None:intergenic | 25.0% |
| !!! | AAGAGTTTTAAGTGATTTAC+CGG | + | chr3.4:56373441-56373460 | None:intergenic | 25.0% |
| !!! | AGTTAGAAACTTTTCTGAAA+TGG | + | chr3.4:56370808-56370827 | None:intergenic | 25.0% |
| !!! | GTTAGAAACTTTTCTGAAAT+GGG | + | chr3.4:56370807-56370826 | None:intergenic | 25.0% |
| !!! | TTTATCGGTCGATTTTATTA+AGG | - | chr3.4:56371884-56371903 | MS.gene04335:intron | 25.0% |
| !!! | TTTGAATTTTGTGAAGGTAT+AGG | - | chr3.4:56373955-56373974 | MS.gene04335:intron | 25.0% |
| AAAGTTTCTAACTTCGCAAT+TGG | - | chr3.4:56370815-56370834 | MS.gene04335:intron | 30.0% | |
| AAGTTTCTAACTTCGCAATT+GGG | - | chr3.4:56370816-56370835 | MS.gene04335:intron | 30.0% | |
| ACAAATTCAAACAACCACAT+AGG | - | chr3.4:56371350-56371369 | MS.gene04335:intron | 30.0% | |
| ACCAGAAGATAAGATCAAAT+AGG | - | chr3.4:56371431-56371450 | MS.gene04335:intron | 30.0% | |
| ACCTGGATATTCAAATAGAT+CGG | + | chr3.4:56373171-56373190 | None:intergenic | 30.0% | |
| ACGATGACGTAAAATCAATT+TGG | + | chr3.4:56374621-56374640 | None:intergenic | 30.0% | |
| ACTGATACCATACAATATTC+TGG | - | chr3.4:56371638-56371657 | MS.gene04335:intron | 30.0% | |
| AGATAGATAGTTACATGTTG+AGG | + | chr3.4:56370669-56370688 | None:intergenic | 30.0% | |
| ATAAGCACCAGAATATTGTA+TGG | + | chr3.4:56371648-56371667 | None:intergenic | 30.0% | |
| ATAGAAAAGAAACAGAGAGA+AGG | + | chr3.4:56373741-56373760 | None:intergenic | 30.0% | |
| ATAGAACAAATAAGGATGAG+AGG | - | chr3.4:56372335-56372354 | MS.gene04335:intron | 30.0% | |
| ATAGTGTAGTTTAAGCCTAA+TGG | - | chr3.4:56372989-56373008 | MS.gene04335:intron | 30.0% | |
| ATATACTCTTTCAATAGCCA+TGG | + | chr3.4:56373072-56373091 | None:intergenic | 30.0% | |
| ATATATGTTATTCCCTACCT+CGG | + | chr3.4:56374342-56374361 | None:intergenic | 30.0% | |
| ATTAAGGGACAAATACATGT+TGG | + | chr3.4:56373929-56373948 | None:intergenic | 30.0% | |
| ATTGATGAACAAGAACAGAA+TGG | - | chr3.4:56370537-56370556 | MS.gene04335:CDS | 30.0% | |
| CAAATAGGCTAATACAAATG+TGG | - | chr3.4:56371446-56371465 | MS.gene04335:intron | 30.0% | |
| CAAGAAGAAAATTTGCAACA+AGG | - | chr3.4:56372021-56372040 | MS.gene04335:intron | 30.0% | |
| CACACATGTAAGATATTTCA+AGG | + | chr3.4:56375161-56375180 | None:intergenic | 30.0% | |
| CATCATCACAGAAAACAAAA+TGG | + | chr3.4:56371847-56371866 | None:intergenic | 30.0% | |
| CTAGTTACTATTGAATCAAC+TGG | - | chr3.4:56375196-56375215 | MS.gene04335:CDS | 30.0% | |
| GAATCATTAGGTTAGAGAAT+TGG | + | chr3.4:56372414-56372433 | None:intergenic | 30.0% | |
| GATATAGAAGATATTGGAAG+AGG | - | chr3.4:56374513-56374532 | MS.gene04335:intron | 30.0% | |
| GTACAAATTCTTTCTATTGG+TGG | - | chr3.4:56371549-56371568 | MS.gene04335:intron | 30.0% | |
| TAGAAAAGAAACAGAGAGAA+GGG | + | chr3.4:56373740-56373759 | None:intergenic | 30.0% | |
| TAGAACAAATAAGGATGAGA+GGG | - | chr3.4:56372336-56372355 | MS.gene04335:intron | 30.0% | |
| TATTGTAATATCACCAGACA+AGG | + | chr3.4:56373513-56373532 | None:intergenic | 30.0% | |
| TCATCACAGAAAACAAAATG+GGG | + | chr3.4:56371845-56371864 | None:intergenic | 30.0% | |
| TCTAAGTTCATGATGTAATC+GGG | + | chr3.4:56370576-56370595 | None:intergenic | 30.0% | |
| TCTTGAACTTCAAAAAACTC+GGG | - | chr3.4:56370623-56370642 | MS.gene04335:intron | 30.0% | |
| TGACTTTCTTGTGTGATAAA+TGG | - | chr3.4:56373239-56373258 | MS.gene04335:intron | 30.0% | |
| TGTAAGATATTTCAAGGAGT+TGG | + | chr3.4:56375155-56375174 | None:intergenic | 30.0% | |
| TTACAATTTCAGAGAAGAAG+AGG | - | chr3.4:56372378-56372397 | MS.gene04335:CDS | 30.0% | |
| TTATAAATAGATGATGCCAG+AGG | - | chr3.4:56373344-56373363 | MS.gene04335:intron | 30.0% | |
| ! | ACATTTGCTTACTAGTTCTT+CGG | + | chr3.4:56374478-56374497 | None:intergenic | 30.0% |
| ! | ACTCTGTTTTGTATCATAGA+AGG | - | chr3.4:56370875-56370894 | MS.gene04335:intron | 30.0% |
| ! | ACTTTGGAAGGATTATGATT+AGG | - | chr3.4:56370840-56370859 | MS.gene04335:intron | 30.0% |
| ! | GAAATAATATGCGTGTTGTT+TGG | - | chr3.4:56373269-56373288 | MS.gene04335:intron | 30.0% |
| ! | TACAACTTCCAGTTTTCTAT+AGG | + | chr3.4:56374185-56374204 | None:intergenic | 30.0% |
| ! | TATCCAACCTTTTCTATACA+AGG | + | chr3.4:56373303-56373322 | None:intergenic | 30.0% |
| ! | TGCTAAACACATGCTTTTAT+AGG | - | chr3.4:56374226-56374245 | MS.gene04335:intron | 30.0% |
| ! | TGGTTAATATAGCTCCATTT+TGG | - | chr3.4:56370962-56370981 | MS.gene04335:CDS | 30.0% |
| ! | TTCTGTGATGATGTCATATT+TGG | - | chr3.4:56371854-56371873 | MS.gene04335:intron | 30.0% |
| !! | AAGTTTGCTATTAATCCAAC+AGG | - | chr3.4:56373838-56373857 | MS.gene04335:intron | 30.0% |
| !! | AATAGCAAACTTGCTAAGAT+AGG | + | chr3.4:56373830-56373849 | None:intergenic | 30.0% |
| !! | ATAGCAAACTTGCTAAGATA+GGG | + | chr3.4:56373829-56373848 | None:intergenic | 30.0% |
| !! | ATGCTTTGCTTTTATTCTCT+AGG | - | chr3.4:56374419-56374438 | MS.gene04335:intron | 30.0% |
| !! | GCTATTTTCATAAGCTATCT+TGG | - | chr3.4:56371238-56371257 | MS.gene04335:intron | 30.0% |
| !! | GTTTGACTTCATTTTATGGT+CGG | + | chr3.4:56371061-56371080 | None:intergenic | 30.0% |
| !! | TATAATTTGGCCTTTTCAAG+TGG | - | chr3.4:56372474-56372493 | MS.gene04335:intron | 30.0% |
| !!! | AAATGTTTTTGGTGTTGGAT+CGG | + | chr3.4:56373617-56373636 | None:intergenic | 30.0% |
| !!! | ATAATTTTAGGTTCCAACCA+TGG | - | chr3.4:56373052-56373071 | MS.gene04335:intron | 30.0% |
| !!! | TTTTGAAGTTCAAGATGAGT+GGG | + | chr3.4:56370618-56370637 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTTCAAGATGAG+TGG | + | chr3.4:56370619-56370638 | None:intergenic | 30.0% |
| AAAAGAGAAAGCCAAAGAGA+TGG | + | chr3.4:56374676-56374695 | None:intergenic | 35.0% | |
| AAAATCTGATTACCGCCATT+AGG | + | chr3.4:56373007-56373026 | None:intergenic | 35.0% | |
| AAAGAGAAAGCCAAAGAGAT+GGG | + | chr3.4:56374675-56374694 | None:intergenic | 35.0% | |
| AAATCCAGCTCCTTGTAATT+TGG | - | chr3.4:56373675-56373694 | MS.gene04335:intron | 35.0% | |
| AACAAGATACAGAGAGAAGA+CGG | + | chr3.4:56371499-56371518 | None:intergenic | 35.0% | |
| ACAATAATACCTCACCATCA+TGG | + | chr3.4:56374598-56374617 | None:intergenic | 35.0% | |
| ACACTAAGGAAGTAAACTGT+AGG | - | chr3.4:56373769-56373788 | MS.gene04335:intron | 35.0% | |
| ACAGTTTACTTCCTTAGTGT+GGG | + | chr3.4:56373769-56373788 | None:intergenic | 35.0% | |
| ACTACATGTTCGTTGTGAAA+AGG | - | chr3.4:56373400-56373419 | MS.gene04335:intron | 35.0% | |
| ACTCCTTGTATAGAAAAGGT+TGG | - | chr3.4:56373297-56373316 | MS.gene04335:intron | 35.0% | |
| AGAAAAGAAACAGAGAGAAG+GGG | + | chr3.4:56373739-56373758 | None:intergenic | 35.0% | |
| AGTGTCTTGATTGTTTGTCT+CGG | - | chr3.4:56375033-56375052 | MS.gene04335:intron | 35.0% | |
| ATAATAGCTAAACTTGGACC+TGG | - | chr3.4:56373703-56373722 | MS.gene04335:intron | 35.0% | |
| ATCACAGAAAACAAAATGGG+GGG | + | chr3.4:56371843-56371862 | None:intergenic | 35.0% | |
| CAATCATGTAAGTGTTAGTG+TGG | + | chr3.4:56373201-56373220 | None:intergenic | 35.0% | |
| CATCACAGAAAACAAAATGG+GGG | + | chr3.4:56371844-56371863 | None:intergenic | 35.0% | |
| CCTGGATATTCAAATAGATC+GGG | + | chr3.4:56373170-56373189 | None:intergenic | 35.0% | |
| CTACATGTTCGTTGTGAAAA+GGG | - | chr3.4:56373401-56373420 | MS.gene04335:intron | 35.0% | |
| CTATGCATAACATGTTACAG+TGG | - | chr3.4:56372855-56372874 | MS.gene04335:intron | 35.0% | |
| CTTCAGTAAATAGCACATCA+GGG | + | chr3.4:56375231-56375250 | None:intergenic | 35.0% | |
| GAAAGATGTTAAGGATGAGT+TGG | - | chr3.4:56374452-56374471 | MS.gene04335:intron | 35.0% | |
| GCCTATTTGATCTTATCTTC+TGG | + | chr3.4:56371435-56371454 | None:intergenic | 35.0% | |
| GTTAGTGTGGATATAAAACC+TGG | + | chr3.4:56373188-56373207 | None:intergenic | 35.0% | |
| TACAGTTTACTTCCTTAGTG+TGG | + | chr3.4:56373770-56373789 | None:intergenic | 35.0% | |
| TACTGAAGCTGTTAAGATTC+TGG | - | chr3.4:56375243-56375262 | MS.gene04335:CDS | 35.0% | |
| TAGATCATAGGATCGTAACA+AGG | - | chr3.4:56372155-56372174 | MS.gene04335:CDS | 35.0% | |
| TATATGTTATTCCCTACCTC+GGG | + | chr3.4:56374341-56374360 | None:intergenic | 35.0% | |
| TGAATCAAATTCTGCTGAGT+TGG | - | chr3.4:56373874-56373893 | MS.gene04335:intron | 35.0% | |
| TGTAACATGTTATGCATAGC+AGG | + | chr3.4:56372854-56372873 | None:intergenic | 35.0% | |
| TGTACTCACGAAAGATGTTA+AGG | - | chr3.4:56374443-56374462 | MS.gene04335:intron | 35.0% | |
| TGTTGGAGATAGATTTAGCT+TGG | + | chr3.4:56373912-56373931 | None:intergenic | 35.0% | |
| TTCAGTAAATAGCACATCAG+GGG | + | chr3.4:56375230-56375249 | None:intergenic | 35.0% | |
| TTTCACAACGAACATGTAGT+TGG | + | chr3.4:56373400-56373419 | None:intergenic | 35.0% | |
| ! | AACTTCCAGTTTTCTATAGG+AGG | + | chr3.4:56374182-56374201 | None:intergenic | 35.0% |
| ! | ATAGAAAGAGCGTAGATCAT+AGG | - | chr3.4:56372143-56372162 | MS.gene04335:CDS | 35.0% |
| ! | ATTACAAGGAGCTGGATTTT+TGG | + | chr3.4:56373674-56373693 | None:intergenic | 35.0% |
| ! | CATTAATCTTGATAGCCTGT+TGG | + | chr3.4:56373856-56373875 | None:intergenic | 35.0% |
| ! | CTTTTCATTGTTTTCACCTC+TGG | + | chr3.4:56373363-56373382 | None:intergenic | 35.0% |
| ! | GAGAATTCTTCGAAAAGCAT+TGG | + | chr3.4:56371795-56371814 | None:intergenic | 35.0% |
| !! | ATAATATGCGTGTTGTTTGG+TGG | - | chr3.4:56373272-56373291 | MS.gene04335:intron | 35.0% |
| !! | CGATTTTGACAACCATGAAT+AGG | + | chr3.4:56372098-56372117 | None:intergenic | 35.0% |
| !! | CTTTCTGTTTTGAACCATGA+TGG | - | chr3.4:56374581-56374600 | MS.gene04335:intron | 35.0% |
| !! | GAATTTTGTGAAGGTATAGG+TGG | - | chr3.4:56373958-56373977 | MS.gene04335:intron | 35.0% |
| !! | GCTGGATTTTTGGAGAATTT+AGG | + | chr3.4:56373664-56373683 | None:intergenic | 35.0% |
| !! | TAGGAGTTGATAACAGTGTA+CGG | - | chr3.4:56371675-56371694 | MS.gene04335:intron | 35.0% |
| !! | TTTCGCTGATTTGATTGTTG+TGG | - | chr3.4:56374696-56374715 | MS.gene04335:intron | 35.0% |
| !!! | GTCGTAAATGTTTTTGGTGT+TGG | + | chr3.4:56373622-56373641 | None:intergenic | 35.0% |
| !!! | TGAAGTTGATGTGCTTGTTT+TGG | - | chr3.4:56370942-56370961 | MS.gene04335:CDS | 35.0% |
| !!! | TTCGTTTTTTTGGGACTTGT+TGG | + | chr3.4:56372446-56372465 | None:intergenic | 35.0% |
| AAAAGAAACAGAGAGAAGGG+GGG | + | chr3.4:56373737-56373756 | None:intergenic | 40.0% | |
| AACTTCGCAATTGGGTACTT+TGG | - | chr3.4:56370824-56370843 | MS.gene04335:intron | 40.0% | |
| AAGCAAAGCATACAGATGTC+AGG | + | chr3.4:56374410-56374429 | None:intergenic | 40.0% | |
| AATACACCCACATAGACTCA+TGG | + | chr3.4:56374099-56374118 | None:intergenic | 40.0% | |
| ACATCCAAATTACAAGGAGC+TGG | + | chr3.4:56373682-56373701 | None:intergenic | 40.0% | |
| ACTCTTTCAATAGCCATGGT+TGG | + | chr3.4:56373068-56373087 | None:intergenic | 40.0% | |
| ACTGTAGGTCTAATGAACTC+AGG | - | chr3.4:56373784-56373803 | MS.gene04335:intron | 40.0% | |
| AGATCCCACTAAAGATCGTT+GGG | - | chr3.4:56372118-56372137 | MS.gene04335:CDS | 40.0% | |
| AGCAAAGCATACAGATGTCA+GGG | + | chr3.4:56374409-56374428 | None:intergenic | 40.0% | |
| ATACCCCAACGATCTTTAGT+GGG | + | chr3.4:56372125-56372144 | None:intergenic | 40.0% | |
| ATCGCAAGATCGTATGATCT+TGG | - | chr3.4:56372714-56372733 | MS.gene04335:CDS | 40.0% | |
| CAGAGAGAAGACGGAAATAA+AGG | + | chr3.4:56371490-56371509 | None:intergenic | 40.0% | |
| CAGCTATTTAACTCCTTGTC+TGG | - | chr3.4:56373497-56373516 | MS.gene04335:intron | 40.0% | |
| CATGTCCTCCTATAGAAAAC+TGG | - | chr3.4:56374174-56374193 | MS.gene04335:intron | 40.0% | |
| CCCGATCTATTTGAATATCC+AGG | - | chr3.4:56373167-56373186 | MS.gene04335:intron | 40.0% | |
| GAAAAGAAACAGAGAGAAGG+GGG | + | chr3.4:56373738-56373757 | None:intergenic | 40.0% | |
| GAACTCAGGAACTAGAAAAC+AGG | - | chr3.4:56373798-56373817 | MS.gene04335:intron | 40.0% | |
| GAAGTTCTTTCCCATAGACT+GGG | - | chr3.4:56373122-56373141 | MS.gene04335:intron | 40.0% | |
| GACATGGAGTTTGACATGAT+TGG | - | chr3.4:56371752-56371771 | MS.gene04335:intron | 40.0% | |
| GATGAACAAGAACAGAATGG+AGG | - | chr3.4:56370540-56370559 | MS.gene04335:CDS | 40.0% | |
| GCTTCAGTAAATAGCACATC+AGG | + | chr3.4:56375232-56375251 | None:intergenic | 40.0% | |
| GGACACTCCTTGTATAGAAA+AGG | - | chr3.4:56373293-56373312 | MS.gene04335:intron | 40.0% | |
| GTGTAGTTTAAGCCTAATGG+CGG | - | chr3.4:56372992-56373011 | MS.gene04335:intron | 40.0% | |
| GTTTATTTGGGCTTGTGAGA+CGG | + | chr3.4:56371332-56371351 | None:intergenic | 40.0% | |
| TAGGGAATGCATAAGAGAAG+CGG | - | chr3.4:56374774-56374793 | MS.gene04335:intron | 40.0% | |
| TATACCCCAACGATCTTTAG+TGG | + | chr3.4:56372126-56372145 | None:intergenic | 40.0% | |
| TCAGTAAATAGCACATCAGG+GGG | + | chr3.4:56375229-56375248 | None:intergenic | 40.0% | |
| TCGAAGAATTCTCATAGCAG+AGG | - | chr3.4:56371802-56371821 | MS.gene04335:intron | 40.0% | |
| TCGCAAGATCGTATGATCTT+GGG | - | chr3.4:56372715-56372734 | MS.gene04335:CDS | 40.0% | |
| TGAAATCAGATACGCTGAAG+TGG | - | chr3.4:56373545-56373564 | MS.gene04335:intron | 40.0% | |
| TGGTCAAAACACTCGTATCA+AGG | + | chr3.4:56374133-56374152 | None:intergenic | 40.0% | |
| TTCTATTACCACCCACACTA+AGG | - | chr3.4:56373755-56373774 | MS.gene04335:intron | 40.0% | |
| TTGACAACCATGAATAGGAC+TGG | + | chr3.4:56372093-56372112 | None:intergenic | 40.0% | |
| TTGATTGTTGTGGTGTGCAT+AGG | - | chr3.4:56374706-56374725 | MS.gene04335:intron | 40.0% | |
| TTGGTAAGACACATGCGAAA+TGG | - | chr3.4:56374282-56374301 | MS.gene04335:intron | 40.0% | |
| TTGTGTTAAGTACTCCCCAA+CGG | - | chr3.4:56374047-56374066 | MS.gene04335:CDS | 40.0% | |
| ! | TTTGTGAAGGTATAGGTGGA+CGG | - | chr3.4:56373962-56373981 | MS.gene04335:intron | 40.0% |
| !! | AGATTTAGCTTGGTAGAGCT+AGG | + | chr3.4:56373902-56373921 | None:intergenic | 40.0% |
| !! | AGTTGATAACAGTGTACGGT+TGG | - | chr3.4:56371679-56371698 | MS.gene04335:intron | 40.0% |
| !! | ATGAGAACTGAGAAGTGTTC+AGG | - | chr3.4:56372298-56372317 | MS.gene04335:intron | 40.0% |
| !! | GAAGCTGTTTTCAACCTATG+TGG | + | chr3.4:56371367-56371386 | None:intergenic | 40.0% |
| !! | GATCGCGATTTTAACAACCT+TGG | - | chr3.4:56372743-56372762 | MS.gene04335:intron | 40.0% |
| !! | TGTTTTGAACCATGATGGTG+AGG | - | chr3.4:56374586-56374605 | MS.gene04335:intron | 40.0% |
| !! | TTTGCACGTTGACTTCAAGT+CGG | - | chr3.4:56372905-56372924 | MS.gene04335:intron | 40.0% |
| !!! | TTGGCCTTTTCAAGTGGAAA+CGG | - | chr3.4:56372480-56372499 | MS.gene04335:intron | 40.0% |
| AAAGCGGTAGATCGCAGAAT+CGG | + | chr3.4:56372622-56372641 | None:intergenic | 45.0% | |
| AACTCAACTGGTAAAGCCGT+TGG | + | chr3.4:56374066-56374085 | None:intergenic | 45.0% | |
| ACAGAAAACAAAATGGGGGG+TGG | + | chr3.4:56371840-56371859 | None:intergenic | 45.0% | |
| ACTCAACTGGTAAAGCCGTT+GGG | + | chr3.4:56374065-56374084 | None:intergenic | 45.0% | |
| AGACCCGTTTCCACTTGAAA+AGG | + | chr3.4:56372487-56372506 | None:intergenic | 45.0% | |
| AGGAATGAGACCCAGTCTAT+GGG | + | chr3.4:56373135-56373154 | None:intergenic | 45.0% | |
| AGTGATTTACCGGTAAGACG+AGG | + | chr3.4:56373431-56373450 | None:intergenic | 45.0% | |
| ATACGATCTTGCGATGCTGA+TGG | + | chr3.4:56372709-56372728 | None:intergenic | 45.0% | |
| ATCTCAAGCTCCCATCTCTT+TGG | - | chr3.4:56374662-56374681 | MS.gene04335:intron | 45.0% | |
| CAAGAACAGAATGGAGGAAG+AGG | - | chr3.4:56370546-56370565 | MS.gene04335:CDS | 45.0% | |
| CAGATGCCATGAGTCTATGT+GGG | - | chr3.4:56374090-56374109 | MS.gene04335:CDS | 45.0% | |
| CAGCATGGATTTGAAGGGTT+CGG | + | chr3.4:56372518-56372537 | None:intergenic | 45.0% | |
| CATAGGCAGAAAAAAGGCTG+TGG | - | chr3.4:56374723-56374742 | MS.gene04335:intron | 45.0% | |
| CCATCCAGCATGGATTTGAA+GGG | + | chr3.4:56372523-56372542 | None:intergenic | 45.0% | |
| CGAAGTTCTTTCCCATAGAC+TGG | - | chr3.4:56373121-56373140 | MS.gene04335:intron | 45.0% | |
| GAGATCCCACTAAAGATCGT+TGG | - | chr3.4:56372117-56372136 | MS.gene04335:CDS | 45.0% | |
| GATCCCACTAAAGATCGTTG+GGG | - | chr3.4:56372119-56372138 | MS.gene04335:CDS | 45.0% | |
| GGCATCTGCATAAACTCAAC+TGG | + | chr3.4:56374078-56374097 | None:intergenic | 45.0% | |
| GGTGTGCATAGGCAGAAAAA+AGG | - | chr3.4:56374717-56374736 | MS.gene04335:intron | 45.0% | |
| GGTTGAAGTGAAACGCATCA+CGG | - | chr3.4:56371724-56371743 | MS.gene04335:intron | 45.0% | |
| GTTTACTTCCTTAGTGTGGG+TGG | + | chr3.4:56373766-56373785 | None:intergenic | 45.0% | |
| TAGGAATGAGACCCAGTCTA+TGG | + | chr3.4:56373136-56373155 | None:intergenic | 45.0% | |
| TCCATCCAGCATGGATTTGA+AGG | + | chr3.4:56372524-56372543 | None:intergenic | 45.0% | |
| TCGCAATTGGGTACTTTGGA+AGG | - | chr3.4:56370828-56370847 | MS.gene04335:intron | 45.0% | |
| TCTGGTGCTTATGCAGCATT+AGG | - | chr3.4:56371656-56371675 | MS.gene04335:intron | 45.0% | |
| TGAGGATGAATCGATGGCAT+CGG | - | chr3.4:56370512-56370531 | MS.gene04335:CDS | 45.0% | |
| TGCATAAGAGAAGCGGAAGA+AGG | - | chr3.4:56374781-56374800 | MS.gene04335:intron | 45.0% | |
| TGCCTATCAGCTGCAAAACA+GGG | + | chr3.4:56371151-56371170 | None:intergenic | 45.0% | |
| ! | CTCTGCGATGGTTTTCAACT+CGG | + | chr3.4:56372594-56372613 | None:intergenic | 45.0% |
| ! | TCTGCGATGGTTTTCAACTC+GGG | + | chr3.4:56372593-56372612 | None:intergenic | 45.0% |
| !! | CAGGAGTAGTTCTAGTATGC+GGG | + | chr3.4:56372835-56372854 | None:intergenic | 45.0% |
| !! | GCAGGAGTAGTTCTAGTATG+CGG | + | chr3.4:56372836-56372855 | None:intergenic | 45.0% |
| !!! | TGGCCTTTTCAAGTGGAAAC+GGG | - | chr3.4:56372481-56372500 | MS.gene04335:intron | 45.0% |
| !! | AAAAAAATAGTAAAATTTAA+AGG | + | chr3.4:56370756-56370775 | None:intergenic | 5.0% |
| !! | CAAAAAAAAAAAAAAAATTA+TGG | + | chr3.4:56372261-56372280 | None:intergenic | 5.0% |
| !!! | CATAATTTTTTTTTTTTTTT+TGG | - | chr3.4:56372259-56372278 | MS.gene04335:intron | 5.0% |
| AAATCCATGCTGGATGGAGC+CGG | - | chr3.4:56372526-56372545 | MS.gene04335:intron | 50.0% | |
| AAGCGGAAGAAGGCGAAGAA+GGG | - | chr3.4:56374791-56374810 | MS.gene04335:intron | 50.0% | |
| AAGGGGGAGAAGGGGAAAAA+TGG | - | chr3.4:56374809-56374828 | MS.gene04335:intron | 50.0% | |
| AAGGGTCAACCTCGTCTTAC+CGG | - | chr3.4:56373419-56373438 | MS.gene04335:intron | 50.0% | |
| ACAACCTTGGTCCTGTTGCA+TGG | - | chr3.4:56372756-56372775 | MS.gene04335:intron | 50.0% | |
| ACGCATCACGGATGAAGACA+TGG | - | chr3.4:56371736-56371755 | MS.gene04335:intron | 50.0% | |
| AGCTAAACTTGGACCTGGTC+AGG | - | chr3.4:56373708-56373727 | MS.gene04335:intron | 50.0% | |
| ATCGAATGCTTCCCGAGGTA+GGG | - | chr3.4:56374327-56374346 | MS.gene04335:intron | 50.0% | |
| CCCTTCAAATCCATGCTGGA+TGG | - | chr3.4:56372520-56372539 | MS.gene04335:intron | 50.0% | |
| CGAACCCTTCAAATCCATGC+TGG | - | chr3.4:56372516-56372535 | MS.gene04335:intron | 50.0% | |
| CGATACCAAGCAGTAGCAAC+CGG | + | chr3.4:56374311-56374330 | None:intergenic | 50.0% | |
| CTCAACTGGTAAAGCCGTTG+GGG | + | chr3.4:56374064-56374083 | None:intergenic | 50.0% | |
| CTTGAAGCTCACGCTGTCAA+AGG | - | chr3.4:56374257-56374276 | MS.gene04335:intron | 50.0% | |
| GACACATGCGAAATGGTCTC+CGG | - | chr3.4:56374289-56374308 | MS.gene04335:intron | 50.0% | |
| GAGGAGTCCAGTCCTATTCA+TGG | - | chr3.4:56372083-56372102 | MS.gene04335:CDS | 50.0% | |
| GCAGATGCCATGAGTCTATG+TGG | - | chr3.4:56374089-56374108 | MS.gene04335:CDS | 50.0% | |
| GGGAGTGAGCTTATTGCTGA+AGG | - | chr3.4:56373577-56373596 | MS.gene04335:intron | 50.0% | |
| GGGTTGAAGATCGGAAACGA+CGG | + | chr3.4:56372668-56372687 | None:intergenic | 50.0% | |
| GTCGTCTGAGGATGAATCGA+TGG | - | chr3.4:56370506-56370525 | MS.gene04335:CDS | 50.0% | |
| GTGCCTATCAGCTGCAAAAC+AGG | + | chr3.4:56371152-56371171 | None:intergenic | 50.0% | |
| TATCCCTCTCTCCATGCAAC+AGG | + | chr3.4:56372770-56372789 | None:intergenic | 50.0% | |
| TATCGAATGCTTCCCGAGGT+AGG | - | chr3.4:56374326-56374345 | MS.gene04335:intron | 50.0% | |
| TGAATAGGACTGGACTCCTC+TGG | + | chr3.4:56372083-56372102 | None:intergenic | 50.0% | |
| TGTTGGATCGGCAGCTGATT+TGG | + | chr3.4:56373605-56373624 | None:intergenic | 50.0% | |
| TTGAAGATCGGAAACGACGG+CGG | + | chr3.4:56372665-56372684 | None:intergenic | 50.0% | |
| TTGGGCTTGTGAGACGGTTT+GGG | + | chr3.4:56371326-56371345 | None:intergenic | 50.0% | |
| TTTGGGCTTGTGAGACGGTT+TGG | + | chr3.4:56371327-56371346 | None:intergenic | 50.0% | |
| ! | TTGGTATCGAATGCTTCCCG+AGG | - | chr3.4:56374322-56374341 | MS.gene04335:intron | 50.0% |
| !! | AGATGAGTGGGAAGCGTTGA+AGG | + | chr3.4:56370606-56370625 | None:intergenic | 50.0% |
| !! | ATCTGGAGCGGGTTGAAGAT+CGG | + | chr3.4:56372677-56372696 | None:intergenic | 50.0% |
| !! | CGAAAAGCATTGGCAACTGC+TGG | + | chr3.4:56371785-56371804 | None:intergenic | 50.0% |
| !! | TGCGATCTACCGCTTTTCCT+CGG | - | chr3.4:56372626-56372645 | MS.gene04335:CDS | 50.0% |
| AAGGCGAAGAAGGGGGAGAA+GGG | - | chr3.4:56374800-56374819 | MS.gene04335:intron | 55.0% | |
| AATCCATGCTGGATGGAGCC+GGG | - | chr3.4:56372527-56372546 | MS.gene04335:intron | 55.0% | |
| ACGCTGAAGTGGTTGCCTCA+CGG | - | chr3.4:56373556-56373575 | MS.gene04335:intron | 55.0% | |
| AGATCGGGATCAGCAGCGAT+AGG | + | chr3.4:56373155-56373174 | None:intergenic | 55.0% | |
| AGCGGAAGAAGGCGAAGAAG+GGG | - | chr3.4:56374792-56374811 | MS.gene04335:intron | 55.0% | |
| CTCTCCATGCAACAGGACCA+AGG | + | chr3.4:56372763-56372782 | None:intergenic | 55.0% | |
| GAAGCGGAAGAAGGCGAAGA+AGG | - | chr3.4:56374790-56374809 | MS.gene04335:intron | 55.0% | |
| GCAATAAGCTCACTCCCGTG+AGG | + | chr3.4:56373574-56373593 | None:intergenic | 55.0% | |
| GCGAGCATGCACTCTGTGTA+GGG | - | chr3.4:56374756-56374775 | MS.gene04335:intron | 55.0% | |
| GCTGATGGCAACCACTGATC+TGG | + | chr3.4:56372694-56372713 | None:intergenic | 55.0% | |
| GGTCAAACCCGAGTCGGATT+GGG | - | chr3.4:56372548-56372567 | MS.gene04335:intron | 55.0% | |
| GGTCCTGTTGCATGGAGAGA+GGG | - | chr3.4:56372764-56372783 | MS.gene04335:intron | 55.0% | |
| TGGCAACCACTGATCTGGAG+CGG | + | chr3.4:56372689-56372708 | None:intergenic | 55.0% | |
| TGGTCCTGTTGCATGGAGAG+AGG | - | chr3.4:56372763-56372782 | MS.gene04335:intron | 55.0% | |
| TTCAACCCGCTCCAGATCAG+TGG | - | chr3.4:56372680-56372699 | MS.gene04335:CDS | 55.0% | |
| ! | AAACCCGAGTCGGATTGGGT+CGG | - | chr3.4:56372552-56372571 | MS.gene04335:intron | 55.0% |
| ! | GCTCACGCTGTCAAAGGCAT+TGG | - | chr3.4:56374263-56374282 | MS.gene04335:intron | 55.0% |
| ! | GGCCCTGTTTTGCAGCTGAT+AGG | - | chr3.4:56371146-56371165 | MS.gene04335:intron | 55.0% |
| !! | AATCCGACTCGGGTTTGACC+CGG | + | chr3.4:56372548-56372567 | None:intergenic | 55.0% |
| AGAAGGGGGGTTACCTGACC+AGG | + | chr3.4:56373724-56373743 | None:intergenic | 60.0% | |
| AGGCGAAGAAGGGGGAGAAG+GGG | - | chr3.4:56374801-56374820 | MS.gene04335:intron | 60.0% | |
| CGCGAGCATGCACTCTGTGT+AGG | - | chr3.4:56374755-56374774 | MS.gene04335:intron | 60.0% | |
| CGCTGAAGTGGTTGCCTCAC+GGG | - | chr3.4:56373557-56373576 | MS.gene04335:intron | 60.0% | |
| GAAGGCGAAGAAGGGGGAGA+AGG | - | chr3.4:56374799-56374818 | MS.gene04335:intron | 60.0% | |
| GAATCGGCGCTTCTCTGCGA+TGG | + | chr3.4:56372606-56372625 | None:intergenic | 60.0% | |
| GCGGAAGAAGGCGAAGAAGG+GGG | - | chr3.4:56374793-56374812 | MS.gene04335:intron | 60.0% | |
| GGGTCAAACCCGAGTCGGAT+TGG | - | chr3.4:56372547-56372566 | MS.gene04335:intron | 60.0% | |
| GGTCTCCGGTTGCTACTGCT+TGG | - | chr3.4:56374303-56374322 | MS.gene04335:intron | 60.0% | |
| TGACCCGACCCAATCCGACT+CGG | + | chr3.4:56372559-56372578 | None:intergenic | 60.0% | |
| ! | AACCCGAGTCGGATTGGGTC+GGG | - | chr3.4:56372553-56372572 | MS.gene04335:intron | 60.0% |
| ! | GGCAACCACTGATCTGGAGC+GGG | + | chr3.4:56372688-56372707 | None:intergenic | 60.0% |
| GACCCGACCCAATCCGACTC+GGG | + | chr3.4:56372558-56372577 | None:intergenic | 65.0% | |
| GAGCCGGGTCAAACCCGAGT+CGG | - | chr3.4:56372542-56372561 | MS.gene04335:intron | 65.0% | |
| GATCGGAAACGACGGCGGAG+CGG | + | chr3.4:56372660-56372679 | None:intergenic | 65.0% | |
| TGACCCGGCTCCATCCAGCA+TGG | + | chr3.4:56372533-56372552 | None:intergenic | 65.0% | |
| GACGGCGCGCCGAGGAAAAG+CGG | + | chr3.4:56372638-56372657 | None:intergenic | 70.0% | |
| GGAAACGACGGCGGAGCGGA+CGG | + | chr3.4:56372656-56372675 | None:intergenic | 70.0% | |
| ! | GCGGAGCGGACGGCGCGCCG+AGG | + | chr3.4:56372646-56372665 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 56370501 | 56375303 | 56370501 | ID=MS.gene04335 |
| chr3.4 | mRNA | 56370501 | 56375303 | 56370501 | ID=MS.gene04335.t1;Parent=MS.gene04335 |
| chr3.4 | exon | 56375130 | 56375303 | 56375130 | ID=MS.gene04335.t1.exon1;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56375130 | 56375303 | 56375130 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56373981 | 56374166 | 56373981 | ID=MS.gene04335.t1.exon2;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56373981 | 56374166 | 56373981 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56372616 | 56372742 | 56372616 | ID=MS.gene04335.t1.exon3;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56372616 | 56372742 | 56372616 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56372364 | 56372450 | 56372364 | ID=MS.gene04335.t1.exon4;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56372364 | 56372450 | 56372364 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56372075 | 56372259 | 56372075 | ID=MS.gene04335.t1.exon5;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56372075 | 56372259 | 56372075 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56371461 | 56371556 | 56371461 | ID=MS.gene04335.t1.exon6;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56371461 | 56371556 | 56371461 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56371270 | 56371363 | 56371270 | ID=MS.gene04335.t1.exon7;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56371270 | 56371363 | 56371270 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56370930 | 56371076 | 56370930 | ID=MS.gene04335.t1.exon8;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56370930 | 56371076 | 56370930 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| chr3.4 | exon | 56370501 | 56370604 | 56370501 | ID=MS.gene04335.t1.exon9;Parent=MS.gene04335.t1 |
| chr3.4 | CDS | 56370501 | 56370604 | 56370501 | ID=cds.MS.gene04335.t1;Parent=MS.gene04335.t1 |
| Gene Sequence |
| Protein sequence |
