Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04160.t1 | XP_003600393.1 | 91.7 | 399 | 23 | 1 | 1 | 389 | 1 | 399 | 3.50E-199 | 704.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04160.t1 | P52432 | 42.5 | 353 | 150 | 6 | 51 | 388 | 26 | 340 | 1.0e-66 | 255.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04160.t1 | G7IXS2 | 91.7 | 399 | 23 | 1 | 1 | 389 | 1 | 399 | 2.5e-199 | 704.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26516 | MS.gene04160 | PPI |
| MS.gene97308 | MS.gene04160 | PPI |
| MS.gene004126 | MS.gene04160 | PPI |
| MS.gene46015 | MS.gene04160 | PPI |
| MS.gene049822 | MS.gene04160 | PPI |
| MS.gene04160 | MS.gene08465 | PPI |
| MS.gene04160 | MS.gene05688 | PPI |
| MS.gene24295 | MS.gene04160 | PPI |
| MS.gene04335 | MS.gene04160 | PPI |
| MS.gene26777 | MS.gene04160 | PPI |
| MS.gene43180 | MS.gene04160 | PPI |
| MS.gene04160 | MS.gene64653 | PPI |
| MS.gene95440 | MS.gene04160 | PPI |
| MS.gene04160 | MS.gene65249 | PPI |
| MS.gene68633 | MS.gene04160 | PPI |
| MS.gene049824 | MS.gene04160 | PPI |
| MS.gene022098 | MS.gene04160 | PPI |
| MS.gene94781 | MS.gene04160 | PPI |
| MS.gene84578 | MS.gene04160 | PPI |
| MS.gene04160 | MS.gene051008 | PPI |
| MS.gene004127 | MS.gene04160 | PPI |
| MS.gene04160 | MS.gene81051 | PPI |
| MS.gene047813 | MS.gene04160 | PPI |
| MS.gene070299 | MS.gene04160 | PPI |
| MS.gene053492 | MS.gene04160 | PPI |
| MS.gene39636 | MS.gene04160 | PPI |
| MS.gene064140 | MS.gene04160 | PPI |
| MS.gene055112 | MS.gene04160 | PPI |
| MS.gene26950 | MS.gene04160 | PPI |
| MS.gene04160 | MS.gene27326 | PPI |
| MS.gene28944 | MS.gene04160 | PPI |
| MS.gene030166 | MS.gene04160 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04160.t1 | MTR_3g060690 | 94.987 | 399 | 10 | 1 | 1 | 389 | 1 | 399 | 0.0 | 770 |
| MS.gene04160.t1 | MTR_4g084150 | 31.661 | 319 | 173 | 8 | 77 | 384 | 11 | 295 | 4.21e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04160.t1 | AT1G60620 | 64.000 | 375 | 110 | 6 | 28 | 389 | 23 | 385 | 5.15e-168 | 475 |
| MS.gene04160.t1 | AT1G60620 | 66.566 | 332 | 96 | 5 | 61 | 389 | 1 | 320 | 4.51e-156 | 442 |
| MS.gene04160.t1 | AT1G60850 | 59.838 | 371 | 122 | 7 | 28 | 384 | 15 | 372 | 2.09e-150 | 430 |
| MS.gene04160.t1 | AT1G60850 | 59.838 | 371 | 122 | 7 | 28 | 384 | 15 | 372 | 2.09e-150 | 430 |
| MS.gene04160.t1 | AT1G60850 | 59.838 | 371 | 122 | 7 | 28 | 384 | 15 | 372 | 2.09e-150 | 430 |
| MS.gene04160.t1 | AT1G60850 | 61.977 | 263 | 83 | 6 | 28 | 276 | 15 | 274 | 1.57e-105 | 313 |
| MS.gene04160.t1 | AT2G15430 | 33.642 | 324 | 170 | 11 | 73 | 384 | 6 | 296 | 2.98e-40 | 145 |
| MS.gene04160.t1 | AT2G15400 | 33.333 | 324 | 171 | 10 | 73 | 384 | 6 | 296 | 2.45e-37 | 137 |
| MS.gene04160.t1 | AT2G15430 | 34.553 | 246 | 126 | 9 | 73 | 306 | 6 | 228 | 2.23e-32 | 122 |
| MS.gene04160.t1 | AT2G15430 | 34.553 | 246 | 126 | 9 | 73 | 306 | 6 | 228 | 3.22e-32 | 122 |
| MS.gene04160.t1 | AT2G15400 | 34.836 | 244 | 124 | 8 | 73 | 304 | 6 | 226 | 8.92e-30 | 115 |
Find 77 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCCAGCCCCTTGTAATT+TGG | 0.213911 | 3.1:-45033715 | MS.gene04160:CDS |
| ATTACAAGGGGCTGGATCTT+TGG | 0.276108 | 3.1:+45033719 | None:intergenic |
| GCTGGATCTTTGGAGAATTT+AGG | 0.296518 | 3.1:+45033729 | None:intergenic |
| TACTGAAGCTGTGAAGATTC+TGG | 0.327730 | 3.1:-45032172 | MS.gene04160:CDS |
| TAGGAATGAGACCCAGTCTA+TGG | 0.328096 | 3.1:+45034256 | None:intergenic |
| TTCTAAGTTCATGATGTAAT+CGG | 0.329327 | 3.1:+45036387 | None:intergenic |
| CACTGAAGTGGTTGCCTAAC+GGG | 0.329435 | 3.1:-45033833 | MS.gene04160:CDS |
| GAAGGCGAAGAAGGAGGAGA+AGG | 0.359424 | 3.1:-45032620 | MS.gene04160:CDS |
| TCTGGTGCTTATGCAGCATT+AGG | 0.369089 | 3.1:-45035284 | MS.gene04160:CDS |
| AAGGGTCAACCTCGTCTTAC+CGG | 0.370642 | 3.1:-45033971 | MS.gene04160:intron |
| GCTTCAGTAAACAGCACATC+AGG | 0.387361 | 3.1:+45032186 | None:intergenic |
| TAAAACCTGGATATTCAAAT+TGG | 0.389141 | 3.1:+45034217 | None:intergenic |
| ACAGATACCATACAATATTC+TGG | 0.390797 | 3.1:-45035302 | MS.gene04160:CDS |
| CGAAGTTCTTGCCCATAGAC+TGG | 0.394435 | 3.1:-45034268 | MS.gene04160:CDS |
| CTAGTTACTATTGAATCAAC+TGG | 0.412801 | 3.1:-45032219 | MS.gene04160:intron |
| CCCGACCAATTTGAATATCC+AGG | 0.417328 | 3.1:-45034222 | MS.gene04160:intron |
| AGCTAAACTTGGACCTGGTC+AGG | 0.418480 | 3.1:-45033682 | MS.gene04160:intron |
| AAGGCGAAGAAGGAGGAGAA+GGG | 0.427546 | 3.1:-45032619 | MS.gene04160:CDS |
| CGAAAAGCATTGGCAACTGC+TGG | 0.428330 | 3.1:+45035158 | None:intergenic |
| CAACATGTTCGTTGTGAAAA+GGG | 0.429767 | 3.1:-45033989 | MS.gene04160:CDS |
| ACAACATGTTCGTTGTGAAA+AGG | 0.437375 | 3.1:-45033990 | MS.gene04160:CDS |
| TAACTTCTATCAAAATTTCA+AGG | 0.446196 | 3.1:-45035237 | MS.gene04160:CDS |
| AGATGAGTGGGAAGCGTTGA+AGG | 0.453951 | 3.1:+45036358 | None:intergenic |
| GAAGCGGAAGAAGGCGAAGA+AGG | 0.464921 | 3.1:-45032629 | MS.gene04160:CDS |
| CAAGAACAGAATGGAGGAAG+AGG | 0.471453 | 3.1:-45036415 | MS.gene04160:CDS |
| AGGCGAAGAAGGAGGAGAAG+GGG | 0.473102 | 3.1:-45032618 | MS.gene04160:CDS |
| ACATCCAAATTACAAGGGGC+TGG | 0.484273 | 3.1:+45033711 | None:intergenic |
| GATATAGAAGATATTGGAAG+AGG | 0.486692 | 3.1:-45032903 | MS.gene04160:intron |
| TGTACTCACGAAAGATGTTA+AGG | 0.487182 | 3.1:-45032973 | MS.gene04160:CDS |
| GACATGGAGTTTGACATGAT+TGG | 0.487643 | 3.1:-45035188 | MS.gene04160:CDS |
| CGATACCAAGCAGTAGCAAC+CGG | 0.487717 | 3.1:+45033108 | None:intergenic |
| CCTGGATATTCAAATTGGTC+GGG | 0.488273 | 3.1:+45034222 | None:intergenic |
| ACCTGGATATTCAAATTGGT+CGG | 0.492745 | 3.1:+45034221 | None:intergenic |
| TTGGTAAGACACATGCGAAA+TGG | 0.496915 | 3.1:-45033134 | MS.gene04160:CDS |
| GAGAATTCTTCGAAAAGCAT+TGG | 0.497782 | 3.1:+45035148 | None:intergenic |
| GATGTTATAGTAGCTAAACT+TGG | 0.502751 | 3.1:-45033693 | MS.gene04160:CDS |
| TCTAAGTTCATGATGTAATC+GGG | 0.512453 | 3.1:+45036388 | None:intergenic |
| GGTCTCCGGTTGCTACTGCT+TGG | 0.528704 | 3.1:-45033113 | MS.gene04160:CDS |
| GAAAGATGTTAAGGATGAGT+TGG | 0.528798 | 3.1:-45032964 | MS.gene04160:CDS |
| CTTGAAGCTCACGCTGTCAA+AGG | 0.530488 | 3.1:-45033159 | MS.gene04160:CDS |
| GACACATGCGAAATGGTCTC+CGG | 0.531525 | 3.1:-45033127 | MS.gene04160:CDS |
| GCTATAAGCTCACTCCCGTT+AGG | 0.534224 | 3.1:+45033819 | None:intergenic |
| ACTCTTTCAATAGCCATGGT+TGG | 0.537705 | 3.1:+45034324 | None:intergenic |
| ATATACTCTTTCAATAGCCA+TGG | 0.546326 | 3.1:+45034320 | None:intergenic |
| GCGAGCATGCACTTTGTGTA+GGG | 0.547116 | 3.1:-45032663 | MS.gene04160:CDS |
| ATAAGCACCAGAATATTGTA+TGG | 0.550616 | 3.1:+45035295 | None:intergenic |
| TGCATAAGAGAAGCGGAAGA+AGG | 0.551993 | 3.1:-45032638 | MS.gene04160:CDS |
| CGCGAGCATGCACTTTGTGT+AGG | 0.554669 | 3.1:-45032664 | MS.gene04160:CDS |
| AGTTGATAACAGTGTACGGT+TGG | 0.555301 | 3.1:-45035261 | MS.gene04160:CDS |
| ACTATAACATCCAAATTACA+AGG | 0.560647 | 3.1:+45033705 | None:intergenic |
| ATTGATGAACAAGAACAGAA+TGG | 0.562671 | 3.1:-45036424 | MS.gene04160:CDS |
| GCTCACGCTGTCAAAGGCAT+TGG | 0.566987 | 3.1:-45033153 | MS.gene04160:CDS |
| AGGAATGAGACCCAGTCTAT+GGG | 0.569217 | 3.1:+45034257 | None:intergenic |
| TCGAAGAATTCTCATAGCAG+AGG | 0.583840 | 3.1:-45035138 | MS.gene04160:intron |
| GCGGAAGAAGGCGAAGAAGG+AGG | 0.584435 | 3.1:-45032626 | MS.gene04160:CDS |
| GAAGTTCTTGCCCATAGACT+GGG | 0.586008 | 3.1:-45034267 | MS.gene04160:CDS |
| CTTCAGTAAACAGCACATCA+GGG | 0.587393 | 3.1:+45032187 | None:intergenic |
| AAAGAAGAATCAAGAAAGCT+CGG | 0.588115 | 3.1:+45032125 | None:intergenic |
| TAGGAGTTGATAACAGTGTA+CGG | 0.591277 | 3.1:-45035265 | MS.gene04160:CDS |
| TGGTCGGGATCAGCAGCGAT+AGG | 0.593736 | 3.1:+45034237 | None:intergenic |
| ACGCATCACGGATGAAGACA+TGG | 0.597126 | 3.1:-45035204 | MS.gene04160:CDS |
| TGAAGATGAATCGATGGCAT+CGG | 0.599176 | 3.1:-45036449 | MS.gene04160:CDS |
| ACACTGAAGTGGTTGCCTAA+CGG | 0.604989 | 3.1:-45033834 | MS.gene04160:CDS |
| GTCGTCTGAAGATGAATCGA+TGG | 0.614778 | 3.1:-45036455 | MS.gene04160:CDS |
| CTATAACATCCAAATTACAA+GGG | 0.623245 | 3.1:+45033706 | None:intergenic |
| TGAAATCAGATACACTGAAG+TGG | 0.623846 | 3.1:-45033845 | MS.gene04160:CDS |
| TTCAGTAAACAGCACATCAG+GGG | 0.627383 | 3.1:+45032188 | None:intergenic |
| TATAACATCCAAATTACAAG+GGG | 0.629035 | 3.1:+45033707 | None:intergenic |
| GGGAGTGAGCTTATAGCTGA+AGG | 0.635380 | 3.1:-45033813 | MS.gene04160:CDS |
| TAGGGAATGCATAAGAGAAG+CGG | 0.637709 | 3.1:-45032645 | MS.gene04160:CDS |
| GATGAACAAGAACAGAATGG+AGG | 0.659810 | 3.1:-45036421 | MS.gene04160:CDS |
| ATAGTAGCTAAACTTGGACC+TGG | 0.667892 | 3.1:-45033687 | MS.gene04160:CDS |
| GGTTGAAGTGAAACGCATCA+CGG | 0.668140 | 3.1:-45035216 | MS.gene04160:CDS |
| AGTCATTTACCGGTAAGACG+AGG | 0.670733 | 3.1:+45033962 | None:intergenic |
| TCAGTAAACAGCACATCAGG+GGG | 0.672614 | 3.1:+45032189 | None:intergenic |
| TTATAAATAGATGGTGCCGG+AGG | 0.682634 | 3.1:-45034046 | MS.gene04160:intron |
| TTGGTATCGAATGCTTCCCG+AGG | 0.698025 | 3.1:-45033094 | MS.gene04160:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATAAAAACGATAA+AGG | + | chr3.1:45034246-45034265 | None:intergenic | 10.0% |
| !!! | ATATTTGATTTTGAATATAT+CGG | - | chr3.1:45033524-45033543 | MS.gene04160:intron | 10.0% |
| !!! | TTAATATTCATAATTTTTTG+TGG | - | chr3.1:45033737-45033756 | MS.gene04160:CDS | 10.0% |
| !!! | TTTATCGTTTTTATAATTTT+AGG | - | chr3.1:45034245-45034264 | MS.gene04160:CDS | 10.0% |
| !! | AATACTGGTAAAAATATATT+AGG | + | chr3.1:45036237-45036256 | None:intergenic | 15.0% |
| !! | CATCTATTTATAAAAAAGAA+AGG | + | chr3.1:45034541-45034560 | None:intergenic | 15.0% |
| !! | GAATAAGAAAAATAATGAAA+AGG | + | chr3.1:45032340-45032359 | None:intergenic | 15.0% |
| !! | GATTCATATAAGAATAAAAA+GGG | - | chr3.1:45033638-45033657 | MS.gene04160:intron | 15.0% |
| !! | TGATTCATATAAGAATAAAA+AGG | - | chr3.1:45033637-45033656 | MS.gene04160:intron | 15.0% |
| !!! | ATTTAACATTATTCATGTTT+TGG | - | chr3.1:45033260-45033279 | MS.gene04160:intron | 15.0% |
| !!! | CTTTCTTTTTTATAAATAGA+TGG | - | chr3.1:45034539-45034558 | MS.gene04160:intron | 15.0% |
| !! | AGATATAAAAATCTAACACT+AGG | + | chr3.1:45035741-45035760 | None:intergenic | 20.0% |
| !! | ATAAACAAGAGAAATTAACT+TGG | + | chr3.1:45033849-45033868 | None:intergenic | 20.0% |
| !! | GGCATATTAAATTAAATTCA+TGG | - | chr3.1:45036063-45036082 | MS.gene04160:intron | 20.0% |
| !! | TAACTTCTATCAAAATTTCA+AGG | - | chr3.1:45033357-45033376 | MS.gene04160:intron | 20.0% |
| !! | TACATATCTTAAACTAATAC+TGG | + | chr3.1:45036252-45036271 | None:intergenic | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | + | chr3.1:45032660-45032679 | None:intergenic | 20.0% |
| !! | TTAGTTAATATACTTCTGTT+TGG | - | chr3.1:45032583-45032602 | MS.gene04160:CDS | 20.0% |
| !! | TTGTGTGATAAATAGAAAAT+TGG | - | chr3.1:45034452-45034471 | MS.gene04160:intron | 20.0% |
| !!! | AATTTTCTTCTTGTTAAAAG+TGG | + | chr3.1:45033927-45033946 | None:intergenic | 20.0% |
| !!! | GTTTGATATTTTTGTTTGTT+CGG | - | chr3.1:45033228-45033247 | MS.gene04160:intron | 20.0% |
| !!! | GTTTTTGATATAGAAGATAT+TGG | - | chr3.1:45035685-45035704 | MS.gene04160:intron | 20.0% |
| !!! | TATATCGGTCAATTTTATTA+AGG | - | chr3.1:45033539-45033558 | MS.gene04160:intron | 20.0% |
| !!! | TTAAAAGTCGTAAATGTTTT+TGG | + | chr3.1:45034832-45034851 | None:intergenic | 20.0% |
| !!! | TTATGCAATTCTTTTGTTAT+AGG | - | chr3.1:45033801-45033820 | MS.gene04160:CDS | 20.0% |
| !!! | TTATTTAGAACACTAACATT+AGG | - | chr3.1:45033673-45033692 | MS.gene04160:intron | 20.0% |
| !!! | TTGTTTGAATTTGCTTATTT+GGG | + | chr3.1:45032986-45033005 | None:intergenic | 20.0% |
| ! | AAAGTTTCTAACTTCATAAC+TGG | - | chr3.1:45032444-45032463 | MS.gene04160:intron | 25.0% |
| ! | AACTAAAAATTGTGCGAATT+TGG | - | chr3.1:45036277-45036296 | MS.gene04160:intron | 25.0% |
| ! | AAGCTATACTATACAACTTA+TGG | - | chr3.1:45032741-45032760 | MS.gene04160:intron | 25.0% |
| ! | AAGTTTCTAACTTCATAACT+GGG | - | chr3.1:45032445-45032464 | MS.gene04160:intron | 25.0% |
| ! | AATCATCACAGAAAACAAAA+TGG | + | chr3.1:45033502-45033521 | None:intergenic | 25.0% |
| ! | ACAATTTGTGAAAAAACTTG+TGG | + | chr3.1:45033040-45033059 | None:intergenic | 25.0% |
| ! | ACCAGAAGATAAAATCAATT+AGG | - | chr3.1:45033075-45033094 | MS.gene04160:intron | 25.0% |
| ! | ACTAAAATTCTTCTATGTTC+AGG | + | chr3.1:45036108-45036127 | None:intergenic | 25.0% |
| ! | ACTATAACATCCAAATTACA+AGG | + | chr3.1:45034892-45034911 | None:intergenic | 25.0% |
| ! | ACTATACAACTTATGGATAT+AGG | - | chr3.1:45032748-45032767 | MS.gene04160:intron | 25.0% |
| ! | AGATCAAGATGATAAATAAC+CGG | - | chr3.1:45036162-45036181 | MS.gene04160:intron | 25.0% |
| ! | AGCTTACAAAAATAGCTTAT+AGG | + | chr3.1:45032726-45032745 | None:intergenic | 25.0% |
| ! | ATAGAAAATAAACAGAGAGA+AGG | + | chr3.1:45034946-45034965 | None:intergenic | 25.0% |
| ! | ATCATCACAGAAAACAAAAT+GGG | + | chr3.1:45033501-45033520 | None:intergenic | 25.0% |
| ! | CTATAACATCCAAATTACAA+GGG | + | chr3.1:45034891-45034910 | None:intergenic | 25.0% |
| ! | GAAATAATATGCATGTTGTT+TGG | - | chr3.1:45034474-45034493 | MS.gene04160:intron | 25.0% |
| ! | GACAATAAAATGAAGTCAAA+CGG | - | chr3.1:45032683-45032702 | MS.gene04160:CDS | 25.0% |
| ! | TAAAACCTGGATATTCAAAT+TGG | + | chr3.1:45034380-45034399 | None:intergenic | 25.0% |
| ! | TAATACCATGTTAGTATGTT+CGG | - | chr3.1:45033765-45033784 | MS.gene04160:CDS | 25.0% |
| ! | TAGAAAATAAACAGAGAGAA+GGG | + | chr3.1:45034945-45034964 | None:intergenic | 25.0% |
| ! | TATAACATCCAAATTACAAG+GGG | + | chr3.1:45034890-45034909 | None:intergenic | 25.0% |
| ! | TCTATATCAAAAACTTTAGC+TGG | + | chr3.1:45035679-45035698 | None:intergenic | 25.0% |
| ! | TTAAATTTGTAATAAGCCAG+AGG | - | chr3.1:45033976-45033995 | MS.gene04160:CDS | 25.0% |
| ! | TTATAGGATGTATTGTTTCA+TGG | - | chr3.1:45033817-45033836 | MS.gene04160:CDS | 25.0% |
| ! | TTCTAAGTTCATGATGTAAT+CGG | + | chr3.1:45032210-45032229 | None:intergenic | 25.0% |
| ! | TTGTGTTTGTAAGCTTATAA+TGG | - | chr3.1:45032534-45032553 | MS.gene04160:intron | 25.0% |
| ! | TTTCATTTGTAAGTATTACG+TGG | - | chr3.1:45036042-45036061 | MS.gene04160:intron | 25.0% |
| ! | TTTGAATTTGTCAAAATCAC+CGG | + | chr3.1:45036184-45036203 | None:intergenic | 25.0% |
| !! | ACTTTGGAAGGATAAAAATT+AGG | - | chr3.1:45032469-45032488 | MS.gene04160:intron | 25.0% |
| !! | ATATTCAACCTTGTTATACA+AGG | + | chr3.1:45034508-45034527 | None:intergenic | 25.0% |
| !! | GTTGTTTGAATTTGCTTATT+TGG | + | chr3.1:45032987-45033006 | None:intergenic | 25.0% |
| !! | GTTTATCGACTATTATTTCA+TGG | - | chr3.1:45033863-45033882 | MS.gene04160:intron | 25.0% |
| !! | TGTTCTAAATAATCAGTTGA+AGG | + | chr3.1:45033665-45033684 | None:intergenic | 25.0% |
| !! | TTTTTATAAATAGATGGTGC+CGG | - | chr3.1:45034545-45034564 | MS.gene04160:intron | 25.0% |
| !!! | AGTTAGAAACTTTTCTGAAA+TGG | + | chr3.1:45032437-45032456 | None:intergenic | 25.0% |
| !!! | GTTAGAAACTTTTCTGAAAT+GGG | + | chr3.1:45032436-45032455 | None:intergenic | 25.0% |
| !!! | TTATGAAATTGGTTTGGTAT+AGG | - | chr3.1:45035133-45035152 | MS.gene04160:intron | 25.0% |
| AAAATCTGATTACCGCTATT+AGG | + | chr3.1:45034212-45034231 | None:intergenic | 30.0% | |
| AATAAAAGGCAAAAGTTCAC+TGG | + | chr3.1:45033703-45033722 | None:intergenic | 30.0% | |
| AATACAAATGCGGCTTAATT+GGG | - | chr3.1:45033100-45033119 | MS.gene04160:CDS | 30.0% | |
| AATGTAGATCTAATGAACTC+AGG | - | chr3.1:45034989-45035008 | MS.gene04160:intron | 30.0% | |
| ACAAGAAAGTCAGATAATCA+AGG | + | chr3.1:45034436-45034455 | None:intergenic | 30.0% | |
| ACACACATGTAAGATATTTC+AGG | + | chr3.1:45036341-45036360 | None:intergenic | 30.0% | |
| ACAGATACCATACAATATTC+TGG | - | chr3.1:45033292-45033311 | MS.gene04160:intron | 30.0% | |
| ACTACTTCCATCTCAATAAA+AGG | + | chr3.1:45033717-45033736 | None:intergenic | 30.0% | |
| AGAAAATAAACAGAGAGAAG+GGG | + | chr3.1:45034944-45034963 | None:intergenic | 30.0% | |
| AGATAGATAGTTACATGTTG+AGG | + | chr3.1:45032302-45032321 | None:intergenic | 30.0% | |
| ATAAGCACCAGAATATTGTA+TGG | + | chr3.1:45033302-45033321 | None:intergenic | 30.0% | |
| ATATACTCTTTCAATAGCCA+TGG | + | chr3.1:45034277-45034296 | None:intergenic | 30.0% | |
| ATTGATGAACAAGAACAGAA+TGG | - | chr3.1:45032170-45032189 | MS.gene04160:CDS | 30.0% | |
| CAAGAAGAAAATTTGCAACA+AGG | - | chr3.1:45033934-45033953 | MS.gene04160:intron | 30.0% | |
| CACACATGTAAGATATTTCA+GGG | + | chr3.1:45036340-45036359 | None:intergenic | 30.0% | |
| CAGTAATCCGTATAAAAACT+CGG | + | chr3.1:45036309-45036328 | None:intergenic | 30.0% | |
| CATGTACAAATTCGTTCTAT+TGG | - | chr3.1:45033190-45033209 | MS.gene04160:intron | 30.0% | |
| CTAGTTACTATTGAATCAAC+TGG | - | chr3.1:45036375-45036394 | MS.gene04160:CDS | 30.0% | |
| GATATAGAAGATATTGGAAG+AGG | - | chr3.1:45035691-45035710 | MS.gene04160:intron | 30.0% | |
| GATGTTATAGTAGCTAAACT+TGG | - | chr3.1:45034901-45034920 | MS.gene04160:intron | 30.0% | |
| GCATAAATACCTATCATGAT+AGG | - | chr3.1:45032790-45032809 | MS.gene04160:intron | 30.0% | |
| GGTATGTTATGAAATTGGTT+TGG | - | chr3.1:45035127-45035146 | MS.gene04160:intron | 30.0% | |
| GTTAGTGTAGATATAAAACC+TGG | + | chr3.1:45034393-45034412 | None:intergenic | 30.0% | |
| GTTCTGGTATGTTATGAAAT+TGG | - | chr3.1:45035122-45035141 | MS.gene04160:intron | 30.0% | |
| TACAAATTCGTTCTATTGGT+GGG | - | chr3.1:45033194-45033213 | MS.gene04160:intron | 30.0% | |
| TATTGTAATATCACCAGACA+AGG | + | chr3.1:45034717-45034736 | None:intergenic | 30.0% | |
| TCATCACAGAAAACAAAATG+GGG | + | chr3.1:45033500-45033519 | None:intergenic | 30.0% | |
| TCTAAGTTCATGATGTAATC+GGG | + | chr3.1:45032209-45032228 | None:intergenic | 30.0% | |
| TGATTCAAATTCTGTTGAGT+TGG | - | chr3.1:45035079-45035098 | MS.gene04160:intron | 30.0% | |
| TTATGTTATGTACTCCCTAA+CGG | - | chr3.1:45035225-45035244 | MS.gene04160:CDS | 30.0% | |
| ! | AAGAGTTTCAAGTCATTTAC+CGG | + | chr3.1:45034645-45034664 | None:intergenic | 30.0% |
| ! | ACTCTGTTTTGTATCTTTGA+AGG | - | chr3.1:45032504-45032523 | MS.gene04160:intron | 30.0% |
| ! | ACTTTTGCCTTTTATTGAGA+TGG | - | chr3.1:45033707-45033726 | MS.gene04160:CDS | 30.0% |
| ! | ATAATATGCATGTTGTTTGG+TGG | - | chr3.1:45034477-45034496 | MS.gene04160:intron | 30.0% |
| ! | CGATTTCCTATAAAAGTATG+TGG | + | chr3.1:45035413-45035432 | None:intergenic | 30.0% |
| ! | TACAACTTCCAGTTTTCTAT+AGG | + | chr3.1:45035363-45035382 | None:intergenic | 30.0% |
| ! | TGCTAACCACATACTTTTAT+AGG | - | chr3.1:45035404-45035423 | MS.gene04160:intron | 30.0% |
| !! | AAATTGTGCGAATTTGGTTT+TGG | - | chr3.1:45036283-45036302 | MS.gene04160:intron | 30.0% |
| !! | AAGTTTGCTATTAATCCAAC+AGG | - | chr3.1:45035043-45035062 | MS.gene04160:intron | 30.0% |
| !! | AATAGCAAACTTGCTAAGAT+AGG | + | chr3.1:45035035-45035054 | None:intergenic | 30.0% |
| !! | ATAGCAAACTTGCTAAGATA+GGG | + | chr3.1:45035034-45035053 | None:intergenic | 30.0% |
| !! | ATGCTTTGCTTTTATTCTCT+AGG | - | chr3.1:45035597-45035616 | MS.gene04160:intron | 30.0% |
| !! | GCCTAATTGATTTTATCTTC+TGG | + | chr3.1:45033079-45033098 | None:intergenic | 30.0% |
| !!! | ATAATTTTAGGTTCCAACCA+TGG | - | chr3.1:45034257-45034276 | MS.gene04160:CDS | 30.0% |
| !!! | GTCGTAAATGTTTTTGGTTT+TGG | + | chr3.1:45034826-45034845 | None:intergenic | 30.0% |
| !!! | TTTTGAAGTTCAAGATGAGT+GGG | + | chr3.1:45032251-45032270 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTTCAAGATGAG+TGG | + | chr3.1:45032252-45032271 | None:intergenic | 30.0% |
| AAAATAAACAGAGAGAAGGG+GGG | + | chr3.1:45034942-45034961 | None:intergenic | 35.0% | |
| AACTTCATAACTGGGTACTT+TGG | - | chr3.1:45032453-45032472 | MS.gene04160:intron | 35.0% | |
| AAGCAAAGCATACAAATGTC+AGG | + | chr3.1:45035588-45035607 | None:intergenic | 35.0% | |
| AAGTCAAAACACTCGTATCA+AGG | + | chr3.1:45035312-45035331 | None:intergenic | 35.0% | |
| ACAACATGTTCGTTGTGAAA+AGG | - | chr3.1:45034604-45034623 | MS.gene04160:intron | 35.0% | |
| ACATAAGTGCCTATCATGAT+AGG | + | chr3.1:45032802-45032821 | None:intergenic | 35.0% | |
| ACCTGGATATTCAAATTGGT+CGG | + | chr3.1:45034376-45034395 | None:intergenic | 35.0% | |
| ACGATGACGCAAAATCAATT+TGG | + | chr3.1:45035799-45035818 | None:intergenic | 35.0% | |
| AGCAAAGCATACAAATGTCA+GGG | + | chr3.1:45035587-45035606 | None:intergenic | 35.0% | |
| AGTGTCTTGATTGTTTGTCT+CGG | - | chr3.1:45036211-45036230 | MS.gene04160:intron | 35.0% | |
| ATAAGAGAAAGCCAAAGAGA+TGG | + | chr3.1:45035854-45035873 | None:intergenic | 35.0% | |
| ATATATGATGTTCCCTACCT+CGG | + | chr3.1:45035520-45035539 | None:intergenic | 35.0% | |
| ATCACAGAAAACAAAATGGG+GGG | + | chr3.1:45033498-45033517 | None:intergenic | 35.0% | |
| CAACATGTTCGTTGTGAAAA+GGG | - | chr3.1:45034605-45034624 | MS.gene04160:intron | 35.0% | |
| CAATACAAATGCGGCTTAAT+TGG | - | chr3.1:45033099-45033118 | MS.gene04160:CDS | 35.0% | |
| CAATTAAGCCGCATTTGTAT+TGG | + | chr3.1:45033101-45033120 | None:intergenic | 35.0% | |
| CAATTAGGCCAATACAAATG+CGG | - | chr3.1:45033090-45033109 | MS.gene04160:intron | 35.0% | |
| CATCACAGAAAACAAAATGG+GGG | + | chr3.1:45033499-45033518 | None:intergenic | 35.0% | |
| CATGTTAGTATGTTCGGAAA+TGG | - | chr3.1:45033771-45033790 | MS.gene04160:CDS | 35.0% | |
| CATTTCCGAACATACTAACA+TGG | + | chr3.1:45033773-45033792 | None:intergenic | 35.0% | |
| GAAAATAAACAGAGAGAAGG+GGG | + | chr3.1:45034943-45034962 | None:intergenic | 35.0% | |
| GAAAGATGTTAAGGATGAGT+TGG | - | chr3.1:45035630-45035649 | MS.gene04160:intron | 35.0% | |
| GAACTCAGGAACTATAAAAC+AGG | - | chr3.1:45035003-45035022 | MS.gene04160:intron | 35.0% | |
| GCAAATTCAAACAACCACAT+AGG | - | chr3.1:45032992-45033011 | MS.gene04160:intron | 35.0% | |
| GTACAAATTCGTTCTATTGG+TGG | - | chr3.1:45033193-45033212 | MS.gene04160:intron | 35.0% | |
| GTGTAGTTTAAGCCTAATAG+CGG | - | chr3.1:45034197-45034216 | MS.gene04160:intron | 35.0% | |
| TGAAATCAGATACACTGAAG+TGG | - | chr3.1:45034749-45034768 | MS.gene04160:intron | 35.0% | |
| TGTAACATGTAATGCATAGC+AGG | + | chr3.1:45034059-45034078 | None:intergenic | 35.0% | |
| TGTAAGATATTTCAGGGACT+TGG | + | chr3.1:45036334-45036353 | None:intergenic | 35.0% | |
| TGTACTCACGAAAGATGTTA+AGG | - | chr3.1:45035621-45035640 | MS.gene04160:intron | 35.0% | |
| TTCTATTAACACCCACACTA+AGG | - | chr3.1:45034960-45034979 | MS.gene04160:intron | 35.0% | |
| ! | AACTTCCAGTTTTCTATAGG+AGG | + | chr3.1:45035360-45035379 | None:intergenic | 35.0% |
| ! | ACATTTGACTTCCTTAGTGT+GGG | + | chr3.1:45034974-45034993 | None:intergenic | 35.0% |
| ! | CATTAAACTTGATAGCCTGT+TGG | + | chr3.1:45035061-45035080 | None:intergenic | 35.0% |
| ! | CTTTTCATTGTTTTCACCTC+CGG | + | chr3.1:45034567-45034586 | None:intergenic | 35.0% |
| ! | GAAACTGTTTTCAACCTATG+TGG | + | chr3.1:45033009-45033028 | None:intergenic | 35.0% |
| ! | GAGAATTCTTCGAAAAGCAT+TGG | + | chr3.1:45033449-45033468 | None:intergenic | 35.0% |
| ! | TACATTTGACTTCCTTAGTG+TGG | + | chr3.1:45034975-45034994 | None:intergenic | 35.0% |
| !! | GCTATTTTCACAAGCTATCT+TGG | - | chr3.1:45032858-45032877 | MS.gene04160:intron | 35.0% |
| !! | GTTTTGGCCGAGTTTTTATA+CGG | - | chr3.1:45036299-45036318 | MS.gene04160:intron | 35.0% |
| !! | TAGGAGTTGATAACAGTGTA+CGG | - | chr3.1:45033329-45033348 | MS.gene04160:intron | 35.0% |
| !! | TGAAATTGGTTTGGTATAGG+TGG | - | chr3.1:45035136-45035155 | MS.gene04160:intron | 35.0% |
| AAATAAACAGAGAGAAGGGG+GGG | + | chr3.1:45034941-45034960 | None:intergenic | 40.0% | |
| AACCAGATACAGAGAGAAGA+CGG | + | chr3.1:45033143-45033162 | None:intergenic | 40.0% | |
| ACTCTTTCAATAGCCATGGT+TGG | + | chr3.1:45034273-45034292 | None:intergenic | 40.0% | |
| ATAGTAGCTAAACTTGGACC+TGG | - | chr3.1:45034907-45034926 | MS.gene04160:intron | 40.0% | |
| ATCTCAAGCTTCCATCTCTT+TGG | - | chr3.1:45035840-45035859 | MS.gene04160:intron | 40.0% | |
| ATGCTATCAGCTGCAAAACA+GGG | + | chr3.1:45032774-45032793 | None:intergenic | 40.0% | |
| CAGCTATTTGATTCCTTGTC+TGG | - | chr3.1:45034701-45034720 | MS.gene04160:intron | 40.0% | |
| CATGTCCTCCTATAGAAAAC+TGG | - | chr3.1:45035352-45035371 | MS.gene04160:intron | 40.0% | |
| CCAATAATACCTCACCATCA+TGG | + | chr3.1:45035776-45035795 | None:intergenic | 40.0% | |
| CCTGGATATTCAAATTGGTC+GGG | + | chr3.1:45034375-45034394 | None:intergenic | 40.0% | |
| CTTCAGTAAACAGCACATCA+GGG | + | chr3.1:45036410-45036429 | None:intergenic | 40.0% | |
| GACATGGAGTTTGACATGAT+TGG | - | chr3.1:45033406-45033425 | MS.gene04160:intron | 40.0% | |
| GATGAACAAGAACAGAATGG+AGG | - | chr3.1:45032173-45032192 | MS.gene04160:CDS | 40.0% | |
| GATTTGATTGTTGTGTGCAC+AGG | - | chr3.1:45035881-45035900 | MS.gene04160:intron | 40.0% | |
| GCCTTACCAGTTGAGTTTAT+GGG | - | chr3.1:45035247-45035266 | MS.gene04160:CDS | 40.0% | |
| GTGATGCTATGTATGTGTTC+TGG | - | chr3.1:45035106-45035125 | MS.gene04160:intron | 40.0% | |
| TACTGAAGCTGTGAAGATTC+TGG | - | chr3.1:45036422-45036441 | MS.gene04160:CDS | 40.0% | |
| TAGGGAATGCATAAGAGAAG+CGG | - | chr3.1:45035949-45035968 | MS.gene04160:intron | 40.0% | |
| TATATGATGTTCCCTACCTC+GGG | + | chr3.1:45035519-45035538 | None:intergenic | 40.0% | |
| TATGCTATCAGCTGCAAAAC+AGG | + | chr3.1:45032775-45032794 | None:intergenic | 40.0% | |
| TCACAGAAAACAAAATGGGG+GGG | + | chr3.1:45033497-45033516 | None:intergenic | 40.0% | |
| TCATAACTGGGTACTTTGGA+AGG | - | chr3.1:45032457-45032476 | MS.gene04160:intron | 40.0% | |
| TCCCATAAACTCAACTGGTA+AGG | + | chr3.1:45035251-45035270 | None:intergenic | 40.0% | |
| TCGAAGAATTCTCATAGCAG+AGG | - | chr3.1:45033456-45033475 | MS.gene04160:intron | 40.0% | |
| TGAAGATGAATCGATGGCAT+CGG | - | chr3.1:45032145-45032164 | MS.gene04160:CDS | 40.0% | |
| TGGACACTCCTTGTATAACA+AGG | - | chr3.1:45034497-45034516 | MS.gene04160:intron | 40.0% | |
| TGTGTGCACAGGTAGAAAAA+AGG | - | chr3.1:45035892-45035911 | MS.gene04160:intron | 40.0% | |
| TTCAGTAAACAGCACATCAG+GGG | + | chr3.1:45036409-45036428 | None:intergenic | 40.0% | |
| TTGGTAAGACACATGCGAAA+TGG | - | chr3.1:45035460-45035479 | MS.gene04160:intron | 40.0% | |
| ! | CCATGATGGTGAGGTATTAT+TGG | - | chr3.1:45035773-45035792 | MS.gene04160:intron | 40.0% |
| ! | CTATTGGTGGGTATTGTTTC+TGG | - | chr3.1:45033206-45033225 | MS.gene04160:intron | 40.0% |
| ! | CTTTCTGTTCTGAACCATGA+TGG | - | chr3.1:45035759-45035778 | MS.gene04160:intron | 40.0% |
| ! | GCTGGATCTTTGGAGAATTT+AGG | + | chr3.1:45034868-45034887 | None:intergenic | 40.0% |
| ! | TTATAAATAGATGGTGCCGG+AGG | - | chr3.1:45034548-45034567 | MS.gene04160:intron | 40.0% |
| !! | AGTTGATAACAGTGTACGGT+TGG | - | chr3.1:45033333-45033352 | MS.gene04160:intron | 40.0% |
| !! | ATTGGTTTGGTATAGGTGGA+CGG | - | chr3.1:45035140-45035159 | MS.gene04160:CDS | 40.0% |
| AAGGAGGAGAAGGGGAAAAA+TGG | - | chr3.1:45035984-45036003 | MS.gene04160:intron | 45.0% | |
| ACACTGAAGTGGTTGCCTAA+CGG | - | chr3.1:45034760-45034779 | MS.gene04160:intron | 45.0% | |
| ACATCCAAATTACAAGGGGC+TGG | + | chr3.1:45034886-45034905 | None:intergenic | 45.0% | |
| ACCAGATACAGAGAGAAGAC+GGG | + | chr3.1:45033142-45033161 | None:intergenic | 45.0% | |
| AGATCCAGCCCCTTGTAATT+TGG | - | chr3.1:45034879-45034898 | MS.gene04160:intron | 45.0% | |
| AGGAATGAGACCCAGTCTAT+GGG | + | chr3.1:45034340-45034359 | None:intergenic | 45.0% | |
| AGTCATTTACCGGTAAGACG+AGG | + | chr3.1:45034635-45034654 | None:intergenic | 45.0% | |
| ATTACAAGGGGCTGGATCTT+TGG | + | chr3.1:45034878-45034897 | None:intergenic | 45.0% | |
| CAAGAACAGAATGGAGGAAG+AGG | - | chr3.1:45032179-45032198 | MS.gene04160:CDS | 45.0% | |
| CACAGGTAGAAAAAAGGCTG+TGG | - | chr3.1:45035898-45035917 | MS.gene04160:intron | 45.0% | |
| CAGAGAGAAGACGGGAATAA+AGG | + | chr3.1:45033134-45033153 | None:intergenic | 45.0% | |
| CCCGACCAATTTGAATATCC+AGG | - | chr3.1:45034372-45034391 | MS.gene04160:intron | 45.0% | |
| GAAGTTCTTGCCCATAGACT+GGG | - | chr3.1:45034327-45034346 | MS.gene04160:CDS | 45.0% | |
| GCTTCAGTAAACAGCACATC+AGG | + | chr3.1:45036411-45036430 | None:intergenic | 45.0% | |
| GGCCTTACCAGTTGAGTTTA+TGG | - | chr3.1:45035246-45035265 | MS.gene04160:CDS | 45.0% | |
| GGTTGAAGTGAAACGCATCA+CGG | - | chr3.1:45033378-45033397 | MS.gene04160:intron | 45.0% | |
| GTCGTCTGAAGATGAATCGA+TGG | - | chr3.1:45032139-45032158 | MS.gene04160:CDS | 45.0% | |
| TAGCATAAGCACCTGTGAGA+CGG | + | chr3.1:45032954-45032973 | None:intergenic | 45.0% | |
| TAGGAATGAGACCCAGTCTA+TGG | + | chr3.1:45034341-45034360 | None:intergenic | 45.0% | |
| TCAGTAAACAGCACATCAGG+GGG | + | chr3.1:45036408-45036427 | None:intergenic | 45.0% | |
| TCTGGTGCTTATGCAGCATT+AGG | - | chr3.1:45033310-45033329 | MS.gene04160:intron | 45.0% | |
| TGCATAAGAGAAGCGGAAGA+AGG | - | chr3.1:45035956-45035975 | MS.gene04160:intron | 45.0% | |
| TGGCATCCCATAAACTCAAC+TGG | + | chr3.1:45035256-45035275 | None:intergenic | 45.0% | |
| ! | TGTTCTGAACCATGATGGTG+AGG | - | chr3.1:45035764-45035783 | MS.gene04160:intron | 45.0% |
| ! | TTTTGGATCAGCAGCTGACT+TGG | + | chr3.1:45034809-45034828 | None:intergenic | 45.0% |
| AAGCACCTGTGAGACGGTTT+GGG | + | chr3.1:45032948-45032967 | None:intergenic | 50.0% | |
| AAGGCGAAGAAGGAGGAGAA+GGG | - | chr3.1:45035975-45035994 | MS.gene04160:intron | 50.0% | |
| AAGGGTCAACCTCGTCTTAC+CGG | - | chr3.1:45034623-45034642 | MS.gene04160:intron | 50.0% | |
| ACGCATCACGGATGAAGACA+TGG | - | chr3.1:45033390-45033409 | MS.gene04160:intron | 50.0% | |
| ACTCAACTGGTAAGGCCGTT+AGG | + | chr3.1:45035243-45035262 | None:intergenic | 50.0% | |
| AGCTAAACTTGGACCTGGTC+AGG | - | chr3.1:45034912-45034931 | MS.gene04160:intron | 50.0% | |
| AGGAGTCCAGTCCTATTGCA+TGG | - | chr3.1:45033996-45034015 | MS.gene04160:CDS | 50.0% | |
| AGTCCAGTCCTATTGCATGG+AGG | - | chr3.1:45033999-45034018 | MS.gene04160:CDS | 50.0% | |
| AGTCCTATTGCATGGAGGGA+GGG | - | chr3.1:45034004-45034023 | MS.gene04160:CDS | 50.0% | |
| ATCGAATGCTTCCCGAGGTA+GGG | - | chr3.1:45035505-45035524 | MS.gene04160:intron | 50.0% | |
| CACTGAAGTGGTTGCCTAAC+GGG | - | chr3.1:45034761-45034780 | MS.gene04160:intron | 50.0% | |
| CAGAAAACAAAATGGGGGGG+TGG | + | chr3.1:45033494-45033513 | None:intergenic | 50.0% | |
| CGAAGTTCTTGCCCATAGAC+TGG | - | chr3.1:45034326-45034345 | MS.gene04160:CDS | 50.0% | |
| CGATACCAAGCAGTAGCAAC+CGG | + | chr3.1:45035489-45035508 | None:intergenic | 50.0% | |
| CTCAACTGGTAAGGCCGTTA+GGG | + | chr3.1:45035242-45035261 | None:intergenic | 50.0% | |
| CTTGAAGCTCACGCTGTCAA+AGG | - | chr3.1:45035435-45035454 | MS.gene04160:intron | 50.0% | |
| GACACATGCGAAATGGTCTC+CGG | - | chr3.1:45035467-45035486 | MS.gene04160:intron | 50.0% | |
| GCGAGCATGCACTTTGTGTA+GGG | - | chr3.1:45035931-45035950 | MS.gene04160:intron | 50.0% | |
| GCTATAAGCTCACTCCCGTT+AGG | + | chr3.1:45034778-45034797 | None:intergenic | 50.0% | |
| GGGAGTGAGCTTATAGCTGA+AGG | - | chr3.1:45034781-45034800 | MS.gene04160:intron | 50.0% | |
| GTCCAGTCCTATTGCATGGA+GGG | - | chr3.1:45034000-45034019 | MS.gene04160:CDS | 50.0% | |
| TAAGCACCTGTGAGACGGTT+TGG | + | chr3.1:45032949-45032968 | None:intergenic | 50.0% | |
| TATCCCTCCCTCCATGCAAT+AGG | + | chr3.1:45034010-45034029 | None:intergenic | 50.0% | |
| TATCGAATGCTTCCCGAGGT+AGG | - | chr3.1:45035504-45035523 | MS.gene04160:intron | 50.0% | |
| TCCCGTCTTCTCTCTGTATC+TGG | - | chr3.1:45033138-45033157 | MS.gene04160:CDS | 50.0% | |
| TGGGATGCCATGAGTCTATG+CGG | - | chr3.1:45035266-45035285 | MS.gene04160:CDS | 50.0% | |
| ! | GTTTTCCCAAACCGTCTCAC+AGG | - | chr3.1:45032940-45032959 | MS.gene04160:CDS | 50.0% |
| ! | TTGGTATCGAATGCTTCCCG+AGG | - | chr3.1:45035500-45035519 | MS.gene04160:intron | 50.0% |
| !! | AGATGAGTGGGAAGCGTTGA+AGG | + | chr3.1:45032239-45032258 | None:intergenic | 50.0% |
| !! | CGAAAAGCATTGGCAACTGC+TGG | + | chr3.1:45033439-45033458 | None:intergenic | 50.0% |
| AGGCGAAGAAGGAGGAGAAG+GGG | - | chr3.1:45035976-45035995 | MS.gene04160:intron | 55.0% | |
| CAGTCCTATTGCATGGAGGG+AGG | - | chr3.1:45034003-45034022 | MS.gene04160:CDS | 55.0% | |
| CGCGAGCATGCACTTTGTGT+AGG | - | chr3.1:45035930-45035949 | MS.gene04160:intron | 55.0% | |
| CTCCCTCCATGCAATAGGAC+TGG | + | chr3.1:45034005-45034024 | None:intergenic | 55.0% | |
| GAAGCGGAAGAAGGCGAAGA+AGG | - | chr3.1:45035965-45035984 | MS.gene04160:intron | 55.0% | |
| GAAGGCGAAGAAGGAGGAGA+AGG | - | chr3.1:45035974-45035993 | MS.gene04160:intron | 55.0% | |
| GATGCCATGAGTCTATGCGG+GGG | - | chr3.1:45035269-45035288 | MS.gene04160:CDS | 55.0% | |
| GCAATAGGACTGGACTCCTC+TGG | + | chr3.1:45033995-45034014 | None:intergenic | 55.0% | |
| GGATGCCATGAGTCTATGCG+GGG | - | chr3.1:45035268-45035287 | MS.gene04160:CDS | 55.0% | |
| GGGATGCCATGAGTCTATGC+GGG | - | chr3.1:45035267-45035286 | MS.gene04160:CDS | 55.0% | |
| TACACCCCCGCATAGACTCA+TGG | + | chr3.1:45035276-45035295 | None:intergenic | 55.0% | |
| ! | GCTCACGCTGTCAAAGGCAT+TGG | - | chr3.1:45035441-45035460 | MS.gene04160:intron | 55.0% |
| GCGGAAGAAGGCGAAGAAGG+AGG | - | chr3.1:45035968-45035987 | MS.gene04160:intron | 60.0% | |
| GGTCTCCGGTTGCTACTGCT+TGG | - | chr3.1:45035481-45035500 | MS.gene04160:intron | 60.0% | |
| TGGTCGGGATCAGCAGCGAT+AGG | + | chr3.1:45034360-45034379 | None:intergenic | 60.0% | |
| GAAGGGGGGGTTACCTGACC+AGG | + | chr3.1:45034928-45034947 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 45032134 | 45036482 | 45032134 | ID=MS.gene04160 |
| chr3.1 | mRNA | 45032134 | 45036482 | 45032134 | ID=MS.gene04160.t1;Parent=MS.gene04160 |
| chr3.1 | exon | 45036339 | 45036482 | 45036339 | ID=MS.gene04160.t1.exon1;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45036339 | 45036482 | 45036339 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45035139 | 45035324 | 45035139 | ID=MS.gene04160.t1.exon2;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45035139 | 45035324 | 45035139 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45034223 | 45034349 | 45034223 | ID=MS.gene04160.t1.exon3;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45034223 | 45034349 | 45034223 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45033972 | 45034058 | 45033972 | ID=MS.gene04160.t1.exon4;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45033972 | 45034058 | 45033972 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45033683 | 45033867 | 45033683 | ID=MS.gene04160.t1.exon5;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45033683 | 45033867 | 45033683 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45033095 | 45033190 | 45033095 | ID=MS.gene04160.t1.exon6;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45033095 | 45033190 | 45033095 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45032904 | 45032997 | 45032904 | ID=MS.gene04160.t1.exon7;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45032904 | 45032997 | 45032904 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45032567 | 45032713 | 45032567 | ID=MS.gene04160.t1.exon8;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45032567 | 45032713 | 45032567 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| chr3.1 | exon | 45032134 | 45032237 | 45032134 | ID=MS.gene04160.t1.exon9;Parent=MS.gene04160.t1 |
| chr3.1 | CDS | 45032134 | 45032237 | 45032134 | ID=cds.MS.gene04160.t1;Parent=MS.gene04160.t1 |
| Gene Sequence |
| Protein sequence |
