Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061774.t1 | XP_013442186.1 | 99.8 | 518 | 1 | 0 | 1 | 518 | 74 | 591 | 1.60E-300 | 1041.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061774.t1 | Q6DGE9 | 37.5 | 88 | 52 | 1 | 335 | 422 | 12 | 96 | 7.3e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061774.t1 | A0A072TG43 | 99.8 | 518 | 1 | 0 | 1 | 518 | 74 | 591 | 1.2e-300 | 1041.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene061774 | 0.814226 | 1.72E-51 | -1.69E-46 |
| MS.gene04985 | MS.gene061774 | 0.807154 | 5.81E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene061774 | 0.809263 | 2.06E-50 | -1.69E-46 |
| MS.gene050297 | MS.gene061774 | 0.817764 | 2.78E-52 | -1.69E-46 |
| MS.gene050818 | MS.gene061774 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene050864 | MS.gene061774 | 0.815778 | 7.77E-52 | -1.69E-46 |
| MS.gene050894 | MS.gene061774 | 0.80617 | 9.37E-50 | -1.69E-46 |
| MS.gene051067 | MS.gene061774 | 0.804735 | 1.87E-49 | -1.69E-46 |
| MS.gene051450 | MS.gene061774 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene051648 | MS.gene061774 | 0.853383 | 2.48E-61 | -1.69E-46 |
| MS.gene051885 | MS.gene061774 | 0.833361 | 5.57E-56 | -1.69E-46 |
| MS.gene052150 | MS.gene061774 | 0.816714 | 4.80E-52 | -1.69E-46 |
| MS.gene052151 | MS.gene061774 | 0.813603 | 2.35E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene061774 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene061774 | 0.83068 | 2.56E-55 | -1.69E-46 |
| MS.gene053538 | MS.gene061774 | 0.832285 | 1.03E-55 | -1.69E-46 |
| MS.gene054585 | MS.gene061774 | 0.812626 | 3.86E-51 | -1.69E-46 |
| MS.gene054999 | MS.gene061774 | 0.85671 | 2.68E-62 | -1.69E-46 |
| MS.gene055251 | MS.gene061774 | 0.853295 | 2.63E-61 | -1.69E-46 |
| MS.gene055331 | MS.gene061774 | 0.873991 | 9.57E-68 | -1.69E-46 |
| MS.gene055764 | MS.gene061774 | 0.824863 | 6.41E-54 | -1.69E-46 |
| MS.gene056266 | MS.gene061774 | -0.812442 | 4.23E-51 | -1.69E-46 |
| MS.gene057082 | MS.gene061774 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene058210 | MS.gene061774 | 0.829238 | 5.76E-55 | -1.69E-46 |
| MS.gene058386 | MS.gene061774 | 0.803028 | 4.24E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene061774 | 0.815831 | 7.56E-52 | -1.69E-46 |
| MS.gene059424 | MS.gene061774 | 0.82785 | 1.25E-54 | -1.69E-46 |
| MS.gene05970 | MS.gene061774 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene05971 | MS.gene061774 | 0.806152 | 9.45E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene061774 | 0.841134 | 5.71E-58 | -1.69E-46 |
| MS.gene06042 | MS.gene061774 | 0.804242 | 2.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061774.t1 | MTR_0276s0010 | 99.807 | 518 | 1 | 0 | 1 | 518 | 74 | 591 | 0.0 | 1069 |
| MS.gene061774.t1 | MTR_3g102680 | 50.920 | 489 | 226 | 6 | 1 | 483 | 102 | 582 | 5.93e-166 | 484 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061774.t1 | AT5G10200 | 87.109 | 512 | 58 | 1 | 1 | 512 | 75 | 578 | 0.0 | 929 |
| MS.gene061774.t1 | AT5G10200 | 87.109 | 512 | 58 | 1 | 1 | 512 | 75 | 578 | 0.0 | 929 |
| MS.gene061774.t1 | AT5G10200 | 87.109 | 512 | 58 | 1 | 1 | 512 | 75 | 578 | 0.0 | 929 |
| MS.gene061774.t1 | AT5G43120 | 45.946 | 518 | 257 | 8 | 1 | 508 | 87 | 591 | 7.29e-156 | 457 |
| MS.gene061774.t1 | AT5G43120 | 47.347 | 490 | 235 | 8 | 1 | 480 | 87 | 563 | 2.09e-155 | 456 |
| MS.gene061774.t1 | AT3G50030 | 42.017 | 476 | 214 | 8 | 1 | 471 | 75 | 493 | 1.75e-108 | 332 |
Find 130 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCATCTGGAAATATTTC+TGG | 0.102747 | 4.1:+10204015 | MS.gene061774:CDS |
| TTTACCTTGTGACATGTATT+TGG | 0.181144 | 4.1:-10202988 | None:intergenic |
| AATAAGGAATGTATATATTT+TGG | 0.230293 | 4.1:-10202309 | None:intergenic |
| AACTAATCGCTCAGCGTAAT+CGG | 0.242598 | 4.1:-10204349 | None:intergenic |
| GTTAGCAAAAGAAAGTTTAT+TGG | 0.248766 | 4.1:+10204254 | MS.gene061774:CDS |
| CCAAGGAACTCATTGCTAAT+TGG | 0.253973 | 4.1:-10202549 | None:intergenic |
| TGCTCGCCTCCAGAGACTTT+TGG | 0.259141 | 4.1:-10204211 | None:intergenic |
| CACCACCGTCACCCTGATTA+TGG | 0.279873 | 4.1:-10204431 | None:intergenic |
| GTTCGAAGCAGAGATTAAAA+TGG | 0.285308 | 4.1:+10203914 | MS.gene061774:CDS |
| GAGAACAACTCTCTCCTTCT+TGG | 0.301124 | 4.1:-10204085 | None:intergenic |
| ATGATATGAGCTGCATAATA+AGG | 0.301312 | 4.1:-10202325 | None:intergenic |
| TGGCTATTGATTGTCTTCTA+TGG | 0.301791 | 4.1:+10202953 | MS.gene061774:CDS |
| GACAGCTAGTGAAAGTGATA+TGG | 0.315697 | 4.1:+10204491 | MS.gene061774:CDS |
| GCATGGTGGCGTCCATAATC+AGG | 0.330107 | 4.1:+10204419 | MS.gene061774:CDS |
| CTTAATATGTAGATCTTCCT+TGG | 0.340124 | 4.1:-10203950 | None:intergenic |
| TGGTTCCTACACAATGAATA+TGG | 0.343437 | 4.1:+10202348 | MS.gene061774:CDS |
| TTCAGATGATTGGCAGTATA+TGG | 0.344104 | 4.1:+10202933 | MS.gene061774:CDS |
| TTTACCAATATGTTGATAGA+AGG | 0.350454 | 4.1:+10202590 | MS.gene061774:CDS |
| GAGGGTAGCAGTTAGAGCTT+TGG | 0.371302 | 4.1:+10202456 | MS.gene061774:CDS |
| TATTATGCAGCTCATATCAT+TGG | 0.378316 | 4.1:+10202328 | MS.gene061774:CDS |
| CGGCATGGGCGGTGTTGAAA+TGG | 0.381441 | 4.1:+10202642 | MS.gene061774:CDS |
| TTAGCCTTCTATCAACATAT+TGG | 0.382403 | 4.1:-10202594 | None:intergenic |
| GAAAATTCACCAGCTGGTAT+TGG | 0.383617 | 4.1:+10202817 | MS.gene061774:CDS |
| TAGAAATTCTTGCTTGCATA+TGG | 0.385235 | 4.1:-10202758 | None:intergenic |
| GTCTAGGAAGGCCGAGGAAT+GGG | 0.391308 | 4.1:+10202666 | MS.gene061774:CDS |
| AGGGTAGCAGTTAGAGCTTT+GGG | 0.392182 | 4.1:+10202457 | MS.gene061774:CDS |
| CATATGGTAGGAAGAAATTC+CGG | 0.398197 | 4.1:-10202742 | None:intergenic |
| TTGCTCGCTCTTCAGATGAT+TGG | 0.408759 | 4.1:+10202923 | MS.gene061774:CDS |
| TTCTAAGAGGTAGGTTGACT+TGG | 0.413383 | 4.1:+10202425 | MS.gene061774:CDS |
| CTCGAGAATTTCACCGTGAC+TGG | 0.417747 | 4.1:-10202518 | None:intergenic |
| CCAATTAGCAATGAGTTCCT+TGG | 0.422140 | 4.1:+10202549 | MS.gene061774:CDS |
| CACAATGCTTCAATAATTCC+AGG | 0.425354 | 4.1:-10202895 | None:intergenic |
| ACTAATCGCTCAGCGTAATC+GGG | 0.426153 | 4.1:-10204348 | None:intergenic |
| ATCGTCATGCCAAAAGTCTC+TGG | 0.426995 | 4.1:+10204202 | MS.gene061774:CDS |
| AATGCATGTCTGCTCTCATA+TGG | 0.429025 | 4.1:+10202251 | None:intergenic |
| AAATATTTCCAGATGAGAAA+AGG | 0.437915 | 4.1:-10204011 | None:intergenic |
| TGCACGGGTAGCATCACTTA+TGG | 0.449721 | 4.1:-10204157 | None:intergenic |
| GGACCTGTTGCTAGTTGCCC+TGG | 0.461427 | 4.1:+10202877 | MS.gene061774:CDS |
| GGTGACGGTGGTGATATATA+TGG | 0.463445 | 4.1:+10204441 | MS.gene061774:CDS |
| GAGTTGTTCTCTATAGCAAT+CGG | 0.470290 | 4.1:+10204097 | MS.gene061774:CDS |
| CCTTTAGTTGAGCTTCTAAG+AGG | 0.473520 | 4.1:+10202412 | MS.gene061774:CDS |
| TATGTAGGTAATTGATAAAG+TGG | 0.475329 | 4.1:+10203732 | MS.gene061774:intron |
| GCACTGGTTGTCAAGCTTGA+AGG | 0.477662 | 4.1:+10203982 | MS.gene061774:CDS |
| AATATTTCCAGATGAGAAAA+GGG | 0.478637 | 4.1:-10204010 | None:intergenic |
| GTTAATGAAAATTCACCAGC+TGG | 0.484392 | 4.1:+10202811 | MS.gene061774:CDS |
| TTCGAAGCAGAGATTAAAAT+GGG | 0.485000 | 4.1:+10203915 | MS.gene061774:CDS |
| AGAGATCAGGATCATTTGAC+TGG | 0.487652 | 4.1:-10204305 | None:intergenic |
| TATTAAGCAGGCTGCAGCAC+TGG | 0.488628 | 4.1:+10203966 | MS.gene061774:CDS |
| ATTCCAGGGCAACTAGCAAC+AGG | 0.491637 | 4.1:-10202880 | None:intergenic |
| CATTCCGAGTCATCAGTCTC+TGG | 0.491761 | 4.1:-10204465 | None:intergenic |
| TTAATATGTAGATCTTCCTT+GGG | 0.495234 | 4.1:-10203949 | None:intergenic |
| GGGCTAGCCAACTGCAATGT+TGG | 0.498049 | 4.1:+10202686 | MS.gene061774:CDS |
| TGCATCGAGACACAAGGGTC+GGG | 0.498166 | 4.1:+10203841 | MS.gene061774:CDS |
| ACAATTTGTCATCAGAAGCT+TGG | 0.499520 | 4.1:+10202850 | MS.gene061774:CDS |
| GAAAGTGATATGGGAAATGA+TGG | 0.499970 | 4.1:+10204501 | MS.gene061774:CDS |
| TGATCTTCTTACACGCGGCA+TGG | 0.501426 | 4.1:+10202627 | MS.gene061774:CDS |
| AGAGACTGATGACTCGGAAT+GGG | 0.505401 | 4.1:+10204467 | MS.gene061774:CDS |
| ACAGCTAGTGAAAGTGATAT+GGG | 0.510559 | 4.1:+10204492 | MS.gene061774:CDS |
| CTCTCCTTCTTGGATCTCAT+AGG | 0.510858 | 4.1:-10204075 | None:intergenic |
| TTCACCGTGACTGGCTAAAG+TGG | 0.511711 | 4.1:-10202509 | None:intergenic |
| GGCTAAAGTGGGAAAAGTGC+TGG | 0.517032 | 4.1:-10202497 | None:intergenic |
| GTTGACTTGGGTTGAGCAGA+GGG | 0.523039 | 4.1:+10202438 | MS.gene061774:CDS |
| CAGAGACTGATGACTCGGAA+TGG | 0.524761 | 4.1:+10204466 | MS.gene061774:CDS |
| AGAAGCAGATGCGTGCTGCT+TGG | 0.530091 | 4.1:+10204373 | MS.gene061774:CDS |
| CTTAATAAGCCAATACCAGC+TGG | 0.532024 | 4.1:-10202826 | None:intergenic |
| GGAAGATCTACATATTAAGC+AGG | 0.534911 | 4.1:+10203954 | MS.gene061774:CDS |
| TTCTTCCATATTCATTGTGT+AGG | 0.537968 | 4.1:-10202353 | None:intergenic |
| TTTGTCATCAGAAGCTTGGT+AGG | 0.539277 | 4.1:+10202854 | MS.gene061774:CDS |
| GCACAAGCTTATGACATGCT+AGG | 0.540972 | 4.1:+10204231 | MS.gene061774:CDS |
| CTTCTTACACGCGGCATGGG+CGG | 0.541650 | 4.1:+10202631 | MS.gene061774:CDS |
| TCCGCAAGGTCAACTAATGC+AGG | 0.542050 | 4.1:-10203757 | None:intergenic |
| CCTCTTAGAAGCTCAACTAA+AGG | 0.542272 | 4.1:-10202412 | None:intergenic |
| GATCTTCTTACACGCGGCAT+GGG | 0.543576 | 4.1:+10202628 | MS.gene061774:CDS |
| TCTAAGAGGTAGGTTGACTT+GGG | 0.544283 | 4.1:+10202426 | MS.gene061774:CDS |
| ATCAAAATACTCAGAAGCAT+TGG | 0.544343 | 4.1:+10204044 | MS.gene061774:CDS |
| GATATGGGAAATGATGGAAT+TGG | 0.544935 | 4.1:+10204507 | MS.gene061774:CDS |
| CACAAGCTTATGACATGCTA+GGG | 0.553569 | 4.1:+10204232 | MS.gene061774:CDS |
| TTGTCATCAGAAGCTTGGTA+GGG | 0.554096 | 4.1:+10202855 | MS.gene061774:CDS |
| TGCTGCTTGGTTATTTCGAG+AGG | 0.554603 | 4.1:+10204386 | MS.gene061774:CDS |
| TAACAAAACTACCTGGCATG+TGG | 0.556418 | 4.1:+10202779 | MS.gene061774:CDS |
| AACAAAACTACCTGGCATGT+GGG | 0.557380 | 4.1:+10202780 | MS.gene061774:CDS |
| ACAAGACCACCCCACATGCC+AGG | 0.559253 | 4.1:-10202790 | None:intergenic |
| AGTCTAGGAAGGCCGAGGAA+TGG | 0.560531 | 4.1:+10202665 | MS.gene061774:CDS |
| CAAGATTGCATCGAGACACA+AGG | 0.563325 | 4.1:+10203835 | MS.gene061774:CDS |
| AGTTGTTCTCTATAGCAATC+GGG | 0.563923 | 4.1:+10204098 | MS.gene061774:CDS |
| TCGCACTAAAGAACAGATAG+AGG | 0.568924 | 4.1:+10203882 | MS.gene061774:CDS |
| CTTGCGGAGATTACAACTCT+AGG | 0.571036 | 4.1:+10203772 | MS.gene061774:CDS |
| ATCTTGAAGAACACTGACAA+TGG | 0.574244 | 4.1:-10203818 | None:intergenic |
| TGTCATCAGAAGCTTGGTAG+GGG | 0.574943 | 4.1:+10202856 | MS.gene061774:CDS |
| TAGTTGAGCTTCTAAGAGGT+AGG | 0.575441 | 4.1:+10202416 | MS.gene061774:CDS |
| GTCTGTGGAGACATAGTGCA+CGG | 0.575568 | 4.1:-10204173 | None:intergenic |
| GGCGTCCATAATCAGGGTGA+CGG | 0.576294 | 4.1:+10204426 | MS.gene061774:CDS |
| GCAGAAAGTTCTGTGCATGC+TGG | 0.577817 | 4.1:+10202379 | MS.gene061774:CDS |
| CACTGTGATCTTCTTACACG+CGG | 0.580191 | 4.1:+10202622 | MS.gene061774:CDS |
| AATTCTTGCTTGCATATGGT+AGG | 0.583132 | 4.1:-10202754 | None:intergenic |
| CGAGAGGCAGCTGTTAAGCA+TGG | 0.584903 | 4.1:+10204402 | MS.gene061774:CDS |
| GGTTGACTTGGGTTGAGCAG+AGG | 0.586421 | 4.1:+10202437 | MS.gene061774:CDS |
| CTTAGAAGCTCAACTAAAGG+AGG | 0.588830 | 4.1:-10202409 | None:intergenic |
| GAAGAGACCAACATTGCAGT+TGG | 0.590523 | 4.1:-10202693 | None:intergenic |
| CATGGTGGCGTCCATAATCA+GGG | 0.591600 | 4.1:+10204420 | MS.gene061774:CDS |
| GCGGTGTTGAAATGGAGTCT+AGG | 0.598414 | 4.1:+10202650 | MS.gene061774:CDS |
| CAGTTGGCTAGCCCATTCCT+CGG | 0.603223 | 4.1:-10202677 | None:intergenic |
| TTGCATCGAGACACAAGGGT+CGG | 0.605332 | 4.1:+10203840 | MS.gene061774:CDS |
| TGTTGAAATGGAGTCTAGGA+AGG | 0.605706 | 4.1:+10202654 | MS.gene061774:CDS |
| GTGTCCTATGAGATCCAAGA+AGG | 0.606913 | 4.1:+10204071 | MS.gene061774:CDS |
| ACAATGCTTCAATAATTCCA+GGG | 0.608618 | 4.1:-10202894 | None:intergenic |
| GTGTGAATAAACTATTTCCA+AGG | 0.609966 | 4.1:-10202566 | None:intergenic |
| TTTCCCACTTTAGCCAGTCA+CGG | 0.611995 | 4.1:+10202505 | MS.gene061774:CDS |
| ACAAAACTACCTGGCATGTG+GGG | 0.615879 | 4.1:+10202781 | MS.gene061774:CDS |
| ATGTCTGCTCTCATATGGAA+AGG | 0.618281 | 4.1:+10202256 | MS.gene061774:CDS |
| AATGGAGTCTAGGAAGGCCG+AGG | 0.620005 | 4.1:+10202660 | MS.gene061774:CDS |
| GCATCACTTATGGCAGCCAA+AGG | 0.625977 | 4.1:-10204147 | None:intergenic |
| TCACCGTGACTGGCTAAAGT+GGG | 0.627571 | 4.1:-10202508 | None:intergenic |
| GAGATCAGGATCATTTGACT+GGG | 0.629493 | 4.1:-10204304 | None:intergenic |
| AAGGACTGAAGAATCGACGC+TGG | 0.632880 | 4.1:+10202275 | MS.gene061774:CDS |
| TGGTCCAGAGACTGATGACT+CGG | 0.634939 | 4.1:+10204461 | MS.gene061774:CDS |
| AAACTACCTGGCATGTGGGG+TGG | 0.640971 | 4.1:+10202784 | MS.gene061774:CDS |
| GAATTTCTAACAAAACTACC+TGG | 0.643669 | 4.1:+10202772 | MS.gene061774:CDS |
| ATGGGAAAAGAATATGCCCA+AGG | 0.649974 | 4.1:+10203933 | MS.gene061774:CDS |
| GTCCATAATCAGGGTGACGG+TGG | 0.652767 | 4.1:+10204429 | MS.gene061774:CDS |
| CTAGAGTTGTAATCTCCGCA+AGG | 0.661496 | 4.1:-10203771 | None:intergenic |
| GCCTGCATTAGTTGACCTTG+CGG | 0.662681 | 4.1:+10203756 | MS.gene061774:CDS |
| AGATCCAAATACATGTCACA+AGG | 0.671859 | 4.1:+10202984 | MS.gene061774:CDS |
| TCTGTGGAGACATAGTGCAC+GGG | 0.677330 | 4.1:-10204172 | None:intergenic |
| GAGGCAGCTGTTAAGCATGG+TGG | 0.678228 | 4.1:+10204405 | MS.gene061774:CDS |
| GTCATGCCAAAAGTCTCTGG+AGG | 0.684030 | 4.1:+10204205 | MS.gene061774:CDS |
| AAGATTGCATCGAGACACAA+GGG | 0.684193 | 4.1:+10203836 | MS.gene061774:CDS |
| CATGACGATTGACAGGTCTG+TGG | 0.690518 | 4.1:-10204188 | None:intergenic |
| GGAATTGGCGATGATGACGA+CGG | 0.760960 | 4.1:+10204522 | MS.gene061774:CDS |
| ATGATCCTGATCTCTCACTG+AGG | 0.765682 | 4.1:+10204313 | MS.gene061774:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATATAAAACAAAGAA+AGG | - | chr4.1:10203430-10203449 | None:intergenic | 10.0% |
| !! | ATTCATTTAGAAATAAAAGT+AGG | + | chr4.1:10203244-10203263 | MS.gene061774:intron | 15.0% |
| !!! | AATAAGGAATGTATATATTT+TGG | - | chr4.1:10202312-10202331 | None:intergenic | 15.0% |
| !! | ACTTTAATTCATCTAGAAAT+TGG | + | chr4.1:10203173-10203192 | MS.gene061774:intron | 20.0% |
| ! | AAATATTTCCAGATGAGAAA+AGG | - | chr4.1:10204014-10204033 | None:intergenic | 25.0% |
| ! | AATATTTCCAGATGAGAAAA+GGG | - | chr4.1:10204013-10204032 | None:intergenic | 25.0% |
| ! | ATGAAAGCAATGATCAAATA+AGG | - | chr4.1:10203625-10203644 | None:intergenic | 25.0% |
| ! | CATCTAAAAACATTGATGTA+TGG | + | chr4.1:10203466-10203485 | MS.gene061774:intron | 25.0% |
| ! | GTTAGCAAAAGAAAGTTTAT+TGG | + | chr4.1:10204254-10204273 | MS.gene061774:CDS | 25.0% |
| ! | TATGTAGGTAATTGATAAAG+TGG | + | chr4.1:10203732-10203751 | MS.gene061774:intron | 25.0% |
| ! | TTAATATGTAGATCTTCCTT+GGG | - | chr4.1:10203952-10203971 | None:intergenic | 25.0% |
| !! | TTTACCAATATGTTGATAGA+AGG | + | chr4.1:10202590-10202609 | MS.gene061774:CDS | 25.0% |
| !!! | CAATGTTTTTAGATGTTCAA+TGG | - | chr4.1:10203461-10203480 | None:intergenic | 25.0% |
| !!! | TAATTGCTTTGCTTTTAAAC+CGG | + | chr4.1:10202723-10202742 | MS.gene061774:CDS | 25.0% |
| AAAGCAATGATCAAATAAGG+AGG | - | chr4.1:10203622-10203641 | None:intergenic | 30.0% | |
| ACAATGCTTCAATAATTCCA+GGG | - | chr4.1:10202897-10202916 | None:intergenic | 30.0% | |
| ATGATATGAGCTGCATAATA+AGG | - | chr4.1:10202328-10202347 | None:intergenic | 30.0% | |
| ATGTATATATCTCGTAGTGA+AGG | - | chr4.1:10203310-10203329 | None:intergenic | 30.0% | |
| ATTTGCACTCTTGAACATTA+AGG | + | chr4.1:10203074-10203093 | MS.gene061774:intron | 30.0% | |
| ATTTGTTTACTTTAACGCCT+TGG | + | chr4.1:10203702-10203721 | MS.gene061774:intron | 30.0% | |
| CTTAAACTTAGTTATCACTG+CGG | + | chr4.1:10203525-10203544 | MS.gene061774:intron | 30.0% | |
| CTTAATATGTAGATCTTCCT+TGG | - | chr4.1:10203953-10203972 | None:intergenic | 30.0% | |
| GAAAAGGAGAAAACAAAGAA+AGG | + | chr4.1:10203370-10203389 | MS.gene061774:intron | 30.0% | |
| GAATTTCTAACAAAACTACC+TGG | + | chr4.1:10202772-10202791 | MS.gene061774:CDS | 30.0% | |
| GTGTGAATAAACTATTTCCA+AGG | - | chr4.1:10202569-10202588 | None:intergenic | 30.0% | |
| TACCTACATAATATATGCCA+AGG | - | chr4.1:10203722-10203741 | None:intergenic | 30.0% | |
| TAGAAATTCTTGCTTGCATA+TGG | - | chr4.1:10202761-10202780 | None:intergenic | 30.0% | |
| TATTATGCAGCTCATATCAT+TGG | + | chr4.1:10202328-10202347 | MS.gene061774:CDS | 30.0% | |
| TTCGAAGCAGAGATTAAAAT+GGG | + | chr4.1:10203915-10203934 | MS.gene061774:CDS | 30.0% | |
| TTCTCATCTGGAAATATTTC+TGG | + | chr4.1:10204015-10204034 | MS.gene061774:CDS | 30.0% | |
| TTCTTCCATATTCATTGTGT+AGG | - | chr4.1:10202356-10202375 | None:intergenic | 30.0% | |
| TTTACCTTGTGACATGTATT+TGG | - | chr4.1:10202991-10203010 | None:intergenic | 30.0% | |
| ! | AAGAGTGCAAATGAATACAT+TGG | - | chr4.1:10203066-10203085 | None:intergenic | 30.0% |
| ! | ATCAAAATACTCAGAAGCAT+TGG | + | chr4.1:10204044-10204063 | MS.gene061774:CDS | 30.0% |
| ! | TTAGCCTTCTATCAACATAT+TGG | - | chr4.1:10202597-10202616 | None:intergenic | 30.0% |
| ! | TTCTGTTTCTTAGTGTGAAA+AGG | + | chr4.1:10203354-10203373 | MS.gene061774:intron | 30.0% |
| AATTCTTGCTTGCATATGGT+AGG | - | chr4.1:10202757-10202776 | None:intergenic | 35.0% | |
| ACAATTTGTCATCAGAAGCT+TGG | + | chr4.1:10202850-10202869 | MS.gene061774:CDS | 35.0% | |
| ACAGCTAGTGAAAGTGATAT+GGG | + | chr4.1:10204492-10204511 | MS.gene061774:CDS | 35.0% | |
| ACTCAACAGTCTACAGAAAT+CGG | - | chr4.1:10203658-10203677 | None:intergenic | 35.0% | |
| AGATCCAAATACATGTCACA+AGG | + | chr4.1:10202984-10203003 | MS.gene061774:CDS | 35.0% | |
| AGTTGTTCTCTATAGCAATC+GGG | + | chr4.1:10204098-10204117 | MS.gene061774:CDS | 35.0% | |
| ATCTTGAAGAACACTGACAA+TGG | - | chr4.1:10203821-10203840 | None:intergenic | 35.0% | |
| CACAATGCTTCAATAATTCC+AGG | - | chr4.1:10202898-10202917 | None:intergenic | 35.0% | |
| CATATGGTAGGAAGAAATTC+CGG | - | chr4.1:10202745-10202764 | None:intergenic | 35.0% | |
| CTAGGTGATCATAAAAAGCT+TGG | + | chr4.1:10203790-10203809 | MS.gene061774:CDS | 35.0% | |
| GAAAGTGATATGGGAAATGA+TGG | + | chr4.1:10204501-10204520 | MS.gene061774:CDS | 35.0% | |
| GAACAAATGCAAGGTTACAA+AGG | - | chr4.1:10203015-10203034 | None:intergenic | 35.0% | |
| GAGTTGTTCTCTATAGCAAT+CGG | + | chr4.1:10204097-10204116 | MS.gene061774:CDS | 35.0% | |
| GGAAGATCTACATATTAAGC+AGG | + | chr4.1:10203954-10203973 | MS.gene061774:CDS | 35.0% | |
| GTTAATGAAAATTCACCAGC+TGG | + | chr4.1:10202811-10202830 | MS.gene061774:CDS | 35.0% | |
| GTTCGAAGCAGAGATTAAAA+TGG | + | chr4.1:10203914-10203933 | MS.gene061774:CDS | 35.0% | |
| TAATGATTCAGCTCATGTGT+AGG | + | chr4.1:10203499-10203518 | MS.gene061774:intron | 35.0% | |
| TATATACATATCACACCGCT+TGG | + | chr4.1:10203321-10203340 | MS.gene061774:intron | 35.0% | |
| TGGTTCCTACACAATGAATA+TGG | + | chr4.1:10202348-10202367 | MS.gene061774:CDS | 35.0% | |
| TTCAGATGATTGGCAGTATA+TGG | + | chr4.1:10202933-10202952 | MS.gene061774:CDS | 35.0% | |
| ! | AAATTGGCTTAGCATGTGAA+TGG | + | chr4.1:10203189-10203208 | MS.gene061774:intron | 35.0% |
| ! | CAGTCTGTAGCTTTTCATTT+AGG | + | chr4.1:10203278-10203297 | MS.gene061774:intron | 35.0% |
| ! | GATATGGGAAATGATGGAAT+TGG | + | chr4.1:10204507-10204526 | MS.gene061774:CDS | 35.0% |
| ! | TGGCTATTGATTGTCTTCTA+TGG | + | chr4.1:10202953-10202972 | MS.gene061774:CDS | 35.0% |
| AACAAAACTACCTGGCATGT+GGG | + | chr4.1:10202780-10202799 | MS.gene061774:CDS | 40.0% | |
| AACTAATCGCTCAGCGTAAT+CGG | - | chr4.1:10204352-10204371 | None:intergenic | 40.0% | |
| AAGATTGCATCGAGACACAA+GGG | + | chr4.1:10203836-10203855 | MS.gene061774:CDS | 40.0% | |
| ACTGTTGAGTTCTCTTCACT+AGG | + | chr4.1:10203668-10203687 | MS.gene061774:intron | 40.0% | |
| AGAGATCAGGATCATTTGAC+TGG | - | chr4.1:10204308-10204327 | None:intergenic | 40.0% | |
| ATGGGAAAAGAATATGCCCA+AGG | + | chr4.1:10203933-10203952 | MS.gene061774:CDS | 40.0% | |
| ATGTCTGCTCTCATATGGAA+AGG | + | chr4.1:10202256-10202275 | MS.gene061774:CDS | 40.0% | |
| CAAACATGTGAGTCCAAACA+TGG | - | chr4.1:10203561-10203580 | None:intergenic | 40.0% | |
| CACAAGCTTATGACATGCTA+GGG | + | chr4.1:10204232-10204251 | MS.gene061774:CDS | 40.0% | |
| CAGAAATATGTCACACCAAG+CGG | - | chr4.1:10203339-10203358 | None:intergenic | 40.0% | |
| CATGTTTGGACTCACATGTT+TGG | + | chr4.1:10203559-10203578 | MS.gene061774:intron | 40.0% | |
| CCAAGGAACTCATTGCTAAT+TGG | - | chr4.1:10202552-10202571 | None:intergenic | 40.0% | |
| CCAATTAGCAATGAGTTCCT+TGG | + | chr4.1:10202549-10202568 | MS.gene061774:CDS | 40.0% | |
| CCTCTTAGAAGCTCAACTAA+AGG | - | chr4.1:10202415-10202434 | None:intergenic | 40.0% | |
| CCTTTAGTTGAGCTTCTAAG+AGG | + | chr4.1:10202412-10202431 | MS.gene061774:CDS | 40.0% | |
| CGCCTTGGCATATATTATGT+AGG | + | chr4.1:10203717-10203736 | MS.gene061774:intron | 40.0% | |
| CTGTTGAGTTCTCTTCACTA+GGG | + | chr4.1:10203669-10203688 | MS.gene061774:intron | 40.0% | |
| CTTAATAAGCCAATACCAGC+TGG | - | chr4.1:10202829-10202848 | None:intergenic | 40.0% | |
| CTTAGAAGCTCAACTAAAGG+AGG | - | chr4.1:10202412-10202431 | None:intergenic | 40.0% | |
| GAAAATTCACCAGCTGGTAT+TGG | + | chr4.1:10202817-10202836 | MS.gene061774:CDS | 40.0% | |
| GACAGCTAGTGAAAGTGATA+TGG | + | chr4.1:10204491-10204510 | MS.gene061774:CDS | 40.0% | |
| GAGATCAGGATCATTTGACT+GGG | - | chr4.1:10204307-10204326 | None:intergenic | 40.0% | |
| TAACAAAACTACCTGGCATG+TGG | + | chr4.1:10202779-10202798 | MS.gene061774:CDS | 40.0% | |
| TCGCACTAAAGAACAGATAG+AGG | + | chr4.1:10203882-10203901 | MS.gene061774:CDS | 40.0% | |
| TGTAACCTTGCATTTGTTCC+TGG | + | chr4.1:10203016-10203035 | MS.gene061774:intron | 40.0% | |
| TGTTGAAATGGAGTCTAGGA+AGG | + | chr4.1:10202654-10202673 | MS.gene061774:CDS | 40.0% | |
| TTGTCATCAGAAGCTTGGTA+GGG | + | chr4.1:10202855-10202874 | MS.gene061774:CDS | 40.0% | |
| TTTGTCATCAGAAGCTTGGT+AGG | + | chr4.1:10202854-10202873 | MS.gene061774:CDS | 40.0% | |
| ! | GGAAATTCCCTTTTCTCATC+TGG | + | chr4.1:10204003-10204022 | MS.gene061774:CDS | 40.0% |
| ! | TAGTTGAGCTTCTAAGAGGT+AGG | + | chr4.1:10202416-10202435 | MS.gene061774:CDS | 40.0% |
| ! | TCTAAGAGGTAGGTTGACTT+GGG | + | chr4.1:10202426-10202445 | MS.gene061774:CDS | 40.0% |
| ! | TCTTTTGCTGCAACAACCTT+TGG | + | chr4.1:10204131-10204150 | MS.gene061774:CDS | 40.0% |
| ! | TTCTAAGAGGTAGGTTGACT+TGG | + | chr4.1:10202425-10202444 | MS.gene061774:CDS | 40.0% |
| ACAAAACTACCTGGCATGTG+GGG | + | chr4.1:10202781-10202800 | MS.gene061774:CDS | 45.0% | |
| ACTAATCGCTCAGCGTAATC+GGG | - | chr4.1:10204351-10204370 | None:intergenic | 45.0% | |
| AGGGTAGCAGTTAGAGCTTT+GGG | + | chr4.1:10202457-10202476 | MS.gene061774:CDS | 45.0% | |
| ATCGTCATGCCAAAAGTCTC+TGG | + | chr4.1:10204202-10204221 | MS.gene061774:CDS | 45.0% | |
| ATGATCCTGATCTCTCACTG+AGG | + | chr4.1:10204313-10204332 | MS.gene061774:CDS | 45.0% | |
| CAAGATTGCATCGAGACACA+AGG | + | chr4.1:10203835-10203854 | MS.gene061774:CDS | 45.0% | |
| CACTGTGATCTTCTTACACG+CGG | + | chr4.1:10202622-10202641 | MS.gene061774:CDS | 45.0% | |
| CAGAACCAGGAACAAATGCA+AGG | - | chr4.1:10203024-10203043 | None:intergenic | 45.0% | |
| CGGCAATTGCTAACCATGTT+TGG | + | chr4.1:10203545-10203564 | MS.gene061774:intron | 45.0% | |
| CTAGAGTTGTAATCTCCGCA+AGG | - | chr4.1:10203774-10203793 | None:intergenic | 45.0% | |
| CTCTCCTTCTTGGATCTCAT+AGG | - | chr4.1:10204078-10204097 | None:intergenic | 45.0% | |
| CTGTCTTAGGCATGAATGCT+TGG | + | chr4.1:10203108-10203127 | MS.gene061774:intron | 45.0% | |
| CTTGCGGAGATTACAACTCT+AGG | + | chr4.1:10203772-10203791 | MS.gene061774:CDS | 45.0% | |
| GAAGAGACCAACATTGCAGT+TGG | - | chr4.1:10202696-10202715 | None:intergenic | 45.0% | |
| GAGAACAACTCTCTCCTTCT+TGG | - | chr4.1:10204088-10204107 | None:intergenic | 45.0% | |
| GCACAAGCTTATGACATGCT+AGG | + | chr4.1:10204231-10204250 | MS.gene061774:CDS | 45.0% | |
| GTGTCCTATGAGATCCAAGA+AGG | + | chr4.1:10204071-10204090 | MS.gene061774:CDS | 45.0% | |
| TGCTTGGCTTAGCATGTGAA+TGG | + | chr4.1:10203124-10203143 | MS.gene061774:intron | 45.0% | |
| TGTCATCAGAAGCTTGGTAG+GGG | + | chr4.1:10202856-10202875 | MS.gene061774:CDS | 45.0% | |
| TTGCTCGCTCTTCAGATGAT+TGG | + | chr4.1:10202923-10202942 | MS.gene061774:CDS | 45.0% | |
| TTTCCCACTTTAGCCAGTCA+CGG | + | chr4.1:10202505-10202524 | MS.gene061774:CDS | 45.0% | |
| ! | AGAGACTGATGACTCGGAAT+GGG | + | chr4.1:10204467-10204486 | MS.gene061774:CDS | 45.0% |
| ! | CTTTTGGCATGACGATTGAC+AGG | - | chr4.1:10204198-10204217 | None:intergenic | 45.0% |
| ! | GGAACTCTACTGACTGTCTT+AGG | + | chr4.1:10203095-10203114 | MS.gene061774:intron | 45.0% |
| ! | GGTGACGGTGGTGATATATA+TGG | + | chr4.1:10204441-10204460 | MS.gene061774:CDS | 45.0% |
| ! | TGCTGCTTGGTTATTTCGAG+AGG | + | chr4.1:10204386-10204405 | MS.gene061774:CDS | 45.0% |
| ! | TTTTGCCTCAGTGAGAGATC+AGG | - | chr4.1:10204321-10204340 | None:intergenic | 45.0% |
| AAGGACTGAAGAATCGACGC+TGG | + | chr4.1:10202275-10202294 | MS.gene061774:CDS | 50.0% | |
| ATTCCAGGGCAACTAGCAAC+AGG | - | chr4.1:10202883-10202902 | None:intergenic | 50.0% | |
| CAGTCTACAGAAATCGGTGC+TGG | - | chr4.1:10203652-10203671 | None:intergenic | 50.0% | |
| CATGACGATTGACAGGTCTG+TGG | - | chr4.1:10204191-10204210 | None:intergenic | 50.0% | |
| CATTCCGAGTCATCAGTCTC+TGG | - | chr4.1:10204468-10204487 | None:intergenic | 50.0% | |
| CCAGTTGAAGTAGCAGAACC+AGG | - | chr4.1:10203037-10203056 | None:intergenic | 50.0% | |
| CTCGAGAATTTCACCGTGAC+TGG | - | chr4.1:10202521-10202540 | None:intergenic | 50.0% | |
| GAGGGTAGCAGTTAGAGCTT+TGG | + | chr4.1:10202456-10202475 | MS.gene061774:CDS | 50.0% | |
| GATCTTCTTACACGCGGCAT+GGG | + | chr4.1:10202628-10202647 | MS.gene061774:CDS | 50.0% | |
| GCAGAAAGTTCTGTGCATGC+TGG | + | chr4.1:10202379-10202398 | MS.gene061774:CDS | 50.0% | |
| GCATCACTTATGGCAGCCAA+AGG | - | chr4.1:10204150-10204169 | None:intergenic | 50.0% | |
| GCCTGCATTAGTTGACCTTG+CGG | + | chr4.1:10203756-10203775 | MS.gene061774:CDS | 50.0% | |
| GTCATGCCAAAAGTCTCTGG+AGG | + | chr4.1:10204205-10204224 | MS.gene061774:CDS | 50.0% | |
| GTCTGTGGAGACATAGTGCA+CGG | - | chr4.1:10204176-10204195 | None:intergenic | 50.0% | |
| TATTAAGCAGGCTGCAGCAC+TGG | + | chr4.1:10203966-10203985 | MS.gene061774:CDS | 50.0% | |
| TCCGCAAGGTCAACTAATGC+AGG | - | chr4.1:10203760-10203779 | None:intergenic | 50.0% | |
| TCTGTGGAGACATAGTGCAC+GGG | - | chr4.1:10204175-10204194 | None:intergenic | 50.0% | |
| TGATCTTCTTACACGCGGCA+TGG | + | chr4.1:10202627-10202646 | MS.gene061774:CDS | 50.0% | |
| TGCACGGGTAGCATCACTTA+TGG | - | chr4.1:10204160-10204179 | None:intergenic | 50.0% | |
| TGGTCCAGAGACTGATGACT+CGG | + | chr4.1:10204461-10204480 | MS.gene061774:CDS | 50.0% | |
| TTGCATCGAGACACAAGGGT+CGG | + | chr4.1:10203840-10203859 | MS.gene061774:CDS | 50.0% | |
| ! | CAGAGACTGATGACTCGGAA+TGG | + | chr4.1:10204466-10204485 | MS.gene061774:CDS | 50.0% |
| ! | CATGGTGGCGTCCATAATCA+GGG | + | chr4.1:10204420-10204439 | MS.gene061774:CDS | 50.0% |
| ! | GCGGTGTTGAAATGGAGTCT+AGG | + | chr4.1:10202650-10202669 | MS.gene061774:CDS | 50.0% |
| ! | GGCTAAAGTGGGAAAAGTGC+TGG | - | chr4.1:10202500-10202519 | None:intergenic | 50.0% |
| ! | TCACCGTGACTGGCTAAAGT+GGG | - | chr4.1:10202511-10202530 | None:intergenic | 50.0% |
| ! | TTCACCGTGACTGGCTAAAG+TGG | - | chr4.1:10202512-10202531 | None:intergenic | 50.0% |
| !! | CCTGGTTCTGCTACTTCAAC+TGG | + | chr4.1:10203034-10203053 | MS.gene061774:intron | 50.0% |
| !! | GCACTGGTTGTCAAGCTTGA+AGG | + | chr4.1:10203982-10204001 | MS.gene061774:CDS | 50.0% |
| !! | GTTGACTTGGGTTGAGCAGA+GGG | + | chr4.1:10202438-10202457 | MS.gene061774:CDS | 50.0% |
| AAACTACCTGGCATGTGGGG+TGG | + | chr4.1:10202784-10202803 | MS.gene061774:CDS | 55.0% | |
| AATGGAGTCTAGGAAGGCCG+AGG | + | chr4.1:10202660-10202679 | MS.gene061774:CDS | 55.0% | |
| AGTCTAGGAAGGCCGAGGAA+TGG | + | chr4.1:10202665-10202684 | MS.gene061774:CDS | 55.0% | |
| CACCACCGTCACCCTGATTA+TGG | - | chr4.1:10204434-10204453 | None:intergenic | 55.0% | |
| CGAGAGGCAGCTGTTAAGCA+TGG | + | chr4.1:10204402-10204421 | MS.gene061774:CDS | 55.0% | |
| GAGGCAGCTGTTAAGCATGG+TGG | + | chr4.1:10204405-10204424 | MS.gene061774:CDS | 55.0% | |
| GGCGTCCATAATCAGGGTGA+CGG | + | chr4.1:10204426-10204445 | MS.gene061774:CDS | 55.0% | |
| GTCTAGGAAGGCCGAGGAAT+GGG | + | chr4.1:10202666-10202685 | MS.gene061774:CDS | 55.0% | |
| TGCATCGAGACACAAGGGTC+GGG | + | chr4.1:10203841-10203860 | MS.gene061774:CDS | 55.0% | |
| ! | AGAAGCAGATGCGTGCTGCT+TGG | + | chr4.1:10204373-10204392 | MS.gene061774:CDS | 55.0% |
| ! | CAGTTGGCTAGCCCATTCCT+CGG | - | chr4.1:10202680-10202699 | None:intergenic | 55.0% |
| ! | GCATGGTGGCGTCCATAATC+AGG | + | chr4.1:10204419-10204438 | MS.gene061774:CDS | 55.0% |
| ! | GTCCATAATCAGGGTGACGG+TGG | + | chr4.1:10204429-10204448 | MS.gene061774:CDS | 55.0% |
| ! | TGCTCGCCTCCAGAGACTTT+TGG | - | chr4.1:10204214-10204233 | None:intergenic | 55.0% |
| !! | GGGCTAGCCAACTGCAATGT+TGG | + | chr4.1:10202686-10202705 | MS.gene061774:CDS | 55.0% |
| !! | GGTTGACTTGGGTTGAGCAG+AGG | + | chr4.1:10202437-10202456 | MS.gene061774:CDS | 55.0% |
| ACAAGACCACCCCACATGCC+AGG | - | chr4.1:10202793-10202812 | None:intergenic | 60.0% | |
| CTTCTTACACGCGGCATGGG+CGG | + | chr4.1:10202631-10202650 | MS.gene061774:CDS | 60.0% | |
| GGACCTGTTGCTAGTTGCCC+TGG | + | chr4.1:10202877-10202896 | MS.gene061774:CDS | 60.0% | |
| ! | CGGCATGGGCGGTGTTGAAA+TGG | + | chr4.1:10202642-10202661 | MS.gene061774:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10202256 | 10204543 | 10202256 | ID=MS.gene061774 |
| chr4.1 | mRNA | 10202256 | 10204543 | 10202256 | ID=MS.gene061774.t1;Parent=MS.gene061774 |
| chr4.1 | exon | 10202256 | 10203005 | 10202256 | ID=MS.gene061774.t1.exon1;Parent=MS.gene061774.t1 |
| chr4.1 | CDS | 10202256 | 10203005 | 10202256 | ID=cds.MS.gene061774.t1;Parent=MS.gene061774.t1 |
| chr4.1 | exon | 10203739 | 10204543 | 10203739 | ID=MS.gene061774.t1.exon2;Parent=MS.gene061774.t1 |
| chr4.1 | CDS | 10203739 | 10204543 | 10203739 | ID=cds.MS.gene061774.t1;Parent=MS.gene061774.t1 |
| Gene Sequence |
| Protein sequence |
