Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063245.t1 | XP_024641268.1 | 96.7 | 270 | 9 | 0 | 1 | 270 | 1 | 270 | 3.70E-147 | 530.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063245.t1 | Q9LW60 | 43.5 | 278 | 129 | 7 | 1 | 269 | 1 | 259 | 3.9e-52 | 206.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063245.t1 | A0A072VHH4 | 95.3 | 274 | 9 | 1 | 1 | 270 | 1 | 274 | 1.5e-145 | 525.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene063245 | -0.800643 | 1.31E-48 | -1.69E-46 |
| MS.gene049378 | MS.gene063245 | 0.802205 | 6.27E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene063245 | -0.805394 | 1.36E-49 | -1.69E-46 |
| MS.gene051655 | MS.gene063245 | 0.812405 | 4.31E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene063245 | 0.805147 | 1.54E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene063245 | 0.807516 | 4.87E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene063245 | 0.819192 | 1.32E-52 | -1.69E-46 |
| MS.gene053094 | MS.gene063245 | 0.843727 | 1.17E-58 | -1.69E-46 |
| MS.gene053189 | MS.gene063245 | 0.810657 | 1.03E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene063245 | 0.836054 | 1.17E-56 | -1.69E-46 |
| MS.gene053340 | MS.gene063245 | 0.90398 | 1.98E-79 | -1.69E-46 |
| MS.gene053963 | MS.gene063245 | 0.84841 | 6.24E-60 | -1.69E-46 |
| MS.gene054222 | MS.gene063245 | 0.829544 | 4.85E-55 | -1.69E-46 |
| MS.gene054479 | MS.gene063245 | 0.812789 | 3.55E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene063245 | 0.815519 | 8.87E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene063245 | 0.83722 | 5.91E-57 | -1.69E-46 |
| MS.gene055147 | MS.gene063245 | 0.813305 | 2.74E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene063245 | 0.822149 | 2.77E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene063245 | 0.827091 | 1.89E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene063245 | 0.801725 | 7.86E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene063245 | 0.806066 | 9.85E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene063245 | 0.815496 | 8.97E-52 | -1.69E-46 |
| MS.gene060412 | MS.gene063245 | 0.815439 | 9.24E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene063245 | 0.8467 | 1.84E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063245.t1 | MTR_1g041475 | 95.255 | 274 | 9 | 1 | 1 | 270 | 1 | 274 | 0.0 | 536 |
| MS.gene063245.t1 | MTR_1g075730 | 60.219 | 274 | 105 | 1 | 1 | 270 | 1 | 274 | 2.11e-117 | 337 |
| MS.gene063245.t1 | MTR_1g075730 | 58.993 | 278 | 106 | 1 | 1 | 270 | 1 | 278 | 7.02e-116 | 334 |
| MS.gene063245.t1 | MTR_8g463130 | 35.938 | 256 | 130 | 5 | 41 | 269 | 5 | 253 | 8.67e-38 | 134 |
| MS.gene063245.t1 | MTR_8g463130 | 36.719 | 256 | 128 | 5 | 41 | 269 | 33 | 281 | 1.28e-37 | 134 |
| MS.gene063245.t1 | MTR_2g008850 | 34.082 | 267 | 142 | 5 | 30 | 269 | 21 | 280 | 4.51e-33 | 122 |
| MS.gene063245.t1 | MTR_4g094208 | 31.429 | 280 | 158 | 5 | 17 | 269 | 4 | 276 | 3.18e-32 | 120 |
| MS.gene063245.t1 | MTR_2g078760 | 35.156 | 256 | 132 | 5 | 41 | 269 | 5 | 253 | 6.77e-32 | 118 |
| MS.gene063245.t1 | MTR_5g063940 | 35.242 | 227 | 116 | 5 | 71 | 269 | 11 | 234 | 1.10e-31 | 117 |
| MS.gene063245.t1 | MTR_2g008850 | 35.398 | 226 | 117 | 4 | 71 | 269 | 11 | 234 | 1.47e-31 | 117 |
| MS.gene063245.t1 | MTR_2g078760 | 35.156 | 256 | 132 | 5 | 41 | 269 | 84 | 332 | 2.28e-31 | 119 |
| MS.gene063245.t1 | MTR_5g063940 | 35.242 | 227 | 116 | 5 | 71 | 269 | 58 | 281 | 6.24e-31 | 116 |
| MS.gene063245.t1 | MTR_7g083300 | 71.084 | 83 | 18 | 3 | 79 | 159 | 14 | 92 | 1.06e-29 | 108 |
| MS.gene063245.t1 | MTR_3g074610 | 32.599 | 227 | 122 | 5 | 71 | 269 | 58 | 281 | 7.43e-27 | 105 |
| MS.gene063245.t1 | MTR_4g094542 | 31.641 | 256 | 140 | 5 | 41 | 269 | 117 | 364 | 3.04e-25 | 103 |
| MS.gene063245.t1 | MTR_1g014640 | 30.698 | 215 | 124 | 5 | 80 | 269 | 109 | 323 | 4.36e-24 | 99.4 |
| MS.gene063245.t1 | MTR_1g013400 | 30.698 | 215 | 124 | 5 | 80 | 269 | 109 | 323 | 4.36e-24 | 99.4 |
| MS.gene063245.t1 | MTR_3g105730 | 30.233 | 215 | 125 | 5 | 80 | 269 | 66 | 280 | 5.06e-23 | 95.9 |
| MS.gene063245.t1 | MTR_3g105730 | 30.233 | 215 | 125 | 5 | 80 | 269 | 44 | 258 | 5.93e-23 | 95.5 |
| MS.gene063245.t1 | MTR_2g078760 | 34.272 | 213 | 106 | 5 | 41 | 226 | 84 | 289 | 1.66e-19 | 86.3 |
| MS.gene063245.t1 | MTR_1g115570 | 28.111 | 217 | 127 | 8 | 79 | 270 | 126 | 338 | 1.12e-16 | 79.0 |
| MS.gene063245.t1 | MTR_2g078760 | 38.621 | 145 | 80 | 3 | 41 | 183 | 84 | 221 | 1.28e-16 | 77.8 |
| MS.gene063245.t1 | MTR_3g091060 | 26.407 | 231 | 141 | 5 | 67 | 270 | 113 | 341 | 6.74e-14 | 71.2 |
| MS.gene063245.t1 | MTR_5g024340 | 24.498 | 249 | 148 | 7 | 59 | 269 | 99 | 345 | 2.61e-13 | 69.3 |
| MS.gene063245.t1 | MTR_5g071550 | 27.155 | 232 | 129 | 9 | 73 | 269 | 148 | 374 | 2.88e-12 | 66.2 |
| MS.gene063245.t1 | MTR_4g094208 | 29.412 | 170 | 111 | 3 | 17 | 184 | 4 | 166 | 1.10e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063245.t1 | AT3G23360 | 43.011 | 279 | 129 | 7 | 1 | 269 | 1 | 259 | 1.82e-69 | 215 |
| MS.gene063245.t1 | AT4G28400 | 35.448 | 268 | 136 | 7 | 30 | 269 | 2 | 260 | 8.99e-37 | 131 |
| MS.gene063245.t1 | AT4G28400 | 35.798 | 257 | 129 | 6 | 41 | 269 | 34 | 282 | 1.51e-36 | 131 |
| MS.gene063245.t1 | AT2G20630 | 34.630 | 257 | 132 | 6 | 41 | 269 | 30 | 278 | 2.65e-36 | 130 |
| MS.gene063245.t1 | AT2G20630 | 34.241 | 257 | 133 | 6 | 41 | 269 | 30 | 278 | 7.45e-34 | 124 |
| MS.gene063245.t1 | AT3G15260 | 33.094 | 278 | 149 | 7 | 20 | 269 | 20 | 288 | 2.14e-33 | 123 |
| MS.gene063245.t1 | AT3G15260 | 33.094 | 278 | 149 | 7 | 20 | 269 | 20 | 288 | 2.14e-33 | 123 |
| MS.gene063245.t1 | AT1G22280 | 33.778 | 225 | 120 | 4 | 72 | 269 | 58 | 280 | 7.36e-30 | 114 |
| MS.gene063245.t1 | AT1G22280 | 33.333 | 231 | 119 | 5 | 72 | 269 | 58 | 286 | 4.34e-29 | 112 |
| MS.gene063245.t1 | AT1G78200 | 34.513 | 226 | 114 | 6 | 75 | 269 | 15 | 237 | 4.48e-29 | 110 |
| MS.gene063245.t1 | AT1G78200 | 34.513 | 226 | 114 | 6 | 75 | 269 | 15 | 237 | 4.48e-29 | 110 |
| MS.gene063245.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 4.93e-29 | 111 |
| MS.gene063245.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 4.93e-29 | 111 |
| MS.gene063245.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 4.93e-29 | 111 |
| MS.gene063245.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 1.70e-26 | 105 |
| MS.gene063245.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 1.70e-26 | 105 |
| MS.gene063245.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 1.70e-26 | 105 |
| MS.gene063245.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 7.27e-25 | 101 |
| MS.gene063245.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 7.27e-25 | 101 |
| MS.gene063245.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 8.70e-25 | 100 |
| MS.gene063245.t1 | AT5G24940 | 29.224 | 219 | 128 | 6 | 77 | 269 | 62 | 279 | 2.54e-23 | 98.6 |
| MS.gene063245.t1 | AT2G34740 | 29.020 | 255 | 145 | 5 | 43 | 269 | 88 | 334 | 8.22e-23 | 96.3 |
| MS.gene063245.t1 | AT5G10740 | 26.977 | 215 | 132 | 4 | 80 | 269 | 65 | 279 | 7.79e-21 | 90.9 |
| MS.gene063245.t1 | AT5G10740 | 26.977 | 215 | 132 | 4 | 80 | 269 | 65 | 279 | 7.79e-21 | 90.9 |
| MS.gene063245.t1 | AT4G28400 | 33.645 | 214 | 106 | 6 | 41 | 226 | 34 | 239 | 6.11e-20 | 86.7 |
| MS.gene063245.t1 | AT5G53140 | 26.047 | 215 | 134 | 3 | 80 | 269 | 133 | 347 | 7.16e-17 | 80.1 |
| MS.gene063245.t1 | AT5G53140 | 26.047 | 215 | 134 | 3 | 80 | 269 | 133 | 347 | 7.16e-17 | 80.1 |
| MS.gene063245.t1 | AT2G34740 | 27.358 | 212 | 118 | 5 | 43 | 226 | 84 | 287 | 2.18e-12 | 66.2 |
| MS.gene063245.t1 | AT2G34740 | 27.358 | 212 | 118 | 5 | 43 | 226 | 102 | 305 | 2.65e-12 | 66.2 |
| MS.gene063245.t1 | AT3G51470 | 20.988 | 243 | 159 | 4 | 59 | 269 | 42 | 283 | 2.89e-11 | 63.2 |
| MS.gene063245.t1 | AT3G51470 | 20.988 | 243 | 159 | 4 | 59 | 269 | 86 | 327 | 4.03e-11 | 63.2 |
Find 48 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTGGCTTGCAAATATT+TGG | 0.170520 | 1.3:+24842426 | None:intergenic |
| GAGATTCTTGTCAAAATAAT+TGG | 0.178491 | 1.3:+24842411 | None:intergenic |
| TGCTCTCTTGAGTGTTTCTT+TGG | 0.223443 | 1.3:+24841821 | None:intergenic |
| ACATCTGTGATGATAATAAA+TGG | 0.273873 | 1.3:-24841732 | MS.gene063245:CDS |
| TGATAAGATTCACTGCTTCT+TGG | 0.281632 | 1.3:+24840721 | None:intergenic |
| AACTTGTGGTTGGAAGTTAT+TGG | 0.296396 | 1.3:-24840982 | MS.gene063245:CDS |
| GTGGAGCATGATTGGATTAA+TGG | 0.328700 | 1.3:-24842559 | MS.gene063245:CDS |
| GAATGATTAAACATGAAATA+TGG | 0.342084 | 1.3:+24840628 | None:intergenic |
| TAGTACTGAATTTGTGATCT+TGG | 0.359368 | 1.3:-24840951 | MS.gene063245:CDS |
| CTTAGGAATCTTTGATACTT+TGG | 0.361268 | 1.3:-24842464 | MS.gene063245:CDS |
| TTGACTTGCACAGGCACTTC+GGG | 0.367269 | 1.3:-24842680 | MS.gene063245:intron |
| TCTGTGATACCAATGTTTCT+TGG | 0.370921 | 1.3:+24841614 | None:intergenic |
| ACATGATGACCATGTGATAT+TGG | 0.372321 | 1.3:+24842583 | None:intergenic |
| CGGGTGAAACTCTCATGTTT+AGG | 0.373283 | 1.3:-24842661 | MS.gene063245:CDS |
| AAGAAGCAGTGAATCTTATC+AGG | 0.393702 | 1.3:-24840719 | MS.gene063245:CDS |
| TCAGATGAAACATGCATCAT+AGG | 0.400144 | 1.3:-24841759 | MS.gene063245:CDS |
| GGAATCTTTGATACTTTGGT+TGG | 0.403046 | 1.3:-24842460 | MS.gene063245:CDS |
| ACAAGAAGCAGCAGAGTGTT+TGG | 0.405610 | 1.3:-24840682 | MS.gene063245:CDS |
| GGCGTAGCTTATCAGACAAT+TGG | 0.418185 | 1.3:-24841654 | MS.gene063245:CDS |
| GTGATACAAAGAGAGCAAAT+TGG | 0.443813 | 1.3:-24842505 | MS.gene063245:CDS |
| GTAAGAAGAAATCATGGAGT+TGG | 0.448595 | 1.3:-24842628 | MS.gene063245:CDS |
| ATCATGTGGTGGAGCATGAT+TGG | 0.450402 | 1.3:-24842567 | MS.gene063245:CDS |
| AATTATGTTAGTCTCATTTG+AGG | 0.462042 | 1.3:-24841851 | MS.gene063245:intron |
| AGAAAGGTAAGAAGAAATCA+TGG | 0.465978 | 1.3:-24842634 | MS.gene063245:CDS |
| TGGCTAAGGAAGCATTGGTT+AGG | 0.478204 | 1.3:-24840662 | MS.gene063245:CDS |
| TCTTGGCAAGCAATGGCATA+TGG | 0.488135 | 1.3:-24840934 | MS.gene063245:CDS |
| AGCAGCAGAGTGTTTGGCTA+AGG | 0.497684 | 1.3:-24840676 | MS.gene063245:CDS |
| GAGACAGAATTGTGGTACTT+AGG | 0.501693 | 1.3:-24842481 | MS.gene063245:CDS |
| TTCTAAAGCTTCAGAACTTG+TGG | 0.505454 | 1.3:-24840996 | MS.gene063245:CDS |
| AAAGCTTCAGAACTTGTGGT+TGG | 0.510242 | 1.3:-24840992 | MS.gene063245:CDS |
| ATTGACTTGCACAGGCACTT+CGG | 0.511916 | 1.3:-24842681 | MS.gene063245:intron |
| AAACACTCTGCTGCTTCTTG+TGG | 0.521856 | 1.3:+24840684 | None:intergenic |
| CTCATGTTTAGGAAATAGAA+AGG | 0.530586 | 1.3:-24842650 | MS.gene063245:CDS |
| GTGTTTGGCTAAGGAAGCAT+TGG | 0.535898 | 1.3:-24840667 | MS.gene063245:CDS |
| ATCAATCATCCAAGAAACAT+TGG | 0.538131 | 1.3:-24841623 | MS.gene063245:CDS |
| GAGTTGGAAGCAAGCCATCA+TGG | 0.546613 | 1.3:-24842612 | MS.gene063245:CDS |
| GGCAAGCAATGGCATATGGC+AGG | 0.549047 | 1.3:-24840930 | MS.gene063245:intron |
| GAATCTTATCAGGCACATAG+AGG | 0.593854 | 1.3:-24840709 | MS.gene063245:CDS |
| AGTTCTGTAATCTCCGATGT+TGG | 0.599281 | 1.3:+24841692 | None:intergenic |
| AGGTAATGCAACAGGTACAA+AGG | 0.604493 | 1.3:-24841020 | MS.gene063245:intron |
| TTTGTGATCTTGGCAAGCAA+TGG | 0.607158 | 1.3:-24840941 | MS.gene063245:CDS |
| ATCACATGGTCATCATGTGG+TGG | 0.639046 | 1.3:-24842578 | MS.gene063245:CDS |
| GATATTGGCATCATCCATGA+TGG | 0.650715 | 1.3:+24842598 | None:intergenic |
| AAACTCGTGCTAGCCAACAT+CGG | 0.656947 | 1.3:-24841705 | MS.gene063245:CDS |
| ACACTCAAGAGAGCATACCT+AGG | 0.689445 | 1.3:-24841813 | MS.gene063245:CDS |
| TGGATGATGCCAATATCACA+TGG | 0.692201 | 1.3:-24842592 | MS.gene063245:CDS |
| AAATTGGTGAGACAGAATTG+TGG | 0.696148 | 1.3:-24842489 | MS.gene063245:CDS |
| AATATCACATGGTCATCATG+TGG | 0.739236 | 1.3:-24842581 | MS.gene063245:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGAAAACAAATATTTAA+GGG | - | chr1.3:24840710-24840729 | MS.gene063245:CDS | 10.0% |
| !! | CATAAGAAAACAAATATTTA+AGG | - | chr1.3:24840709-24840728 | MS.gene063245:CDS | 15.0% |
| !! | TTTAAGGGAAAAATAATATA+TGG | - | chr1.3:24840725-24840744 | MS.gene063245:CDS | 15.0% |
| !! | ATAAAGAACATAATCTCATA+AGG | + | chr1.3:24840758-24840777 | None:intergenic | 20.0% |
| !! | GAATGATTAAACATGAAATA+TGG | + | chr1.3:24842864-24842883 | None:intergenic | 20.0% |
| !! | GAGAAAATAGGAAATTATAT+GGG | + | chr1.3:24841575-24841594 | None:intergenic | 20.0% |
| !! | TAAAGAACATAATCTCATAA+GGG | + | chr1.3:24840757-24840776 | None:intergenic | 20.0% |
| !! | TAATATTGTTATATTGAGAG+AGG | + | chr1.3:24842335-24842354 | None:intergenic | 20.0% |
| !! | TACTTTAATGAAGAGTAAAA+GGG | - | chr1.3:24841510-24841529 | MS.gene063245:intron | 20.0% |
| !! | TGAGAAAATAGGAAATTATA+TGG | + | chr1.3:24841576-24841595 | None:intergenic | 20.0% |
| !!! | CTATAAATGAGTATATGTTT+TGG | - | chr1.3:24842385-24842404 | MS.gene063245:intron | 20.0% |
| !!! | TCTTTTTGAAATGTTTAGAA+TGG | - | chr1.3:24841929-24841948 | MS.gene063245:intron | 20.0% |
| !!! | TTGTAATGGATAAATATCTT+GGG | + | chr1.3:24842590-24842609 | None:intergenic | 20.0% |
| !!! | TTTGTAATGGATAAATATCT+TGG | + | chr1.3:24842591-24842610 | None:intergenic | 20.0% |
| ! | ACATCTGTGATGATAATAAA+TGG | - | chr1.3:24841757-24841776 | MS.gene063245:CDS | 25.0% |
| ! | GAAAGTTTATGGATATAAGA+TGG | - | chr1.3:24841345-24841364 | MS.gene063245:intron | 25.0% |
| ! | GAGATTCTTGTCAAAATAAT+TGG | + | chr1.3:24841081-24841100 | None:intergenic | 25.0% |
| ! | GTACTTTAATGAAGAGTAAA+AGG | - | chr1.3:24841509-24841528 | MS.gene063245:intron | 25.0% |
| ! | TAAGCTATGAAAATAGCTTA+TGG | - | chr1.3:24842114-24842133 | MS.gene063245:intron | 25.0% |
| !! | AATTATGTTAGTCTCATTTG+AGG | - | chr1.3:24841638-24841657 | MS.gene063245:CDS | 25.0% |
| !! | TCTATTTTCATAAGCTATCT+TGG | - | chr1.3:24841323-24841342 | MS.gene063245:intron | 25.0% |
| !!! | ATAATTGGCTTGCAAATATT+TGG | + | chr1.3:24841066-24841085 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTTCATTCAATT+GGG | - | chr1.3:24842282-24842301 | MS.gene063245:intron | 25.0% |
| !!! | TGTAATGGATAAATATCTTG+GGG | + | chr1.3:24842589-24842608 | None:intergenic | 25.0% |
| !!! | TTACTCGGAATTTTTTGTAA+TGG | + | chr1.3:24842604-24842623 | None:intergenic | 25.0% |
| AAAGTAATAGCATGTGAATC+AGG | - | chr1.3:24842449-24842468 | MS.gene063245:CDS | 30.0% | |
| AAGCTATCTTGGAAAGTTTA+TGG | - | chr1.3:24841334-24841353 | MS.gene063245:intron | 30.0% | |
| AGAAAGGTAAGAAGAAATCA+TGG | - | chr1.3:24840855-24840874 | MS.gene063245:intron | 30.0% | |
| ATCAATCATCCAAGAAACAT+TGG | - | chr1.3:24841866-24841885 | MS.gene063245:intron | 30.0% | |
| CTCATGTTTAGGAAATAGAA+AGG | - | chr1.3:24840839-24840858 | MS.gene063245:intron | 30.0% | |
| CTTAGGAATCTTTGATACTT+TGG | - | chr1.3:24841025-24841044 | MS.gene063245:intron | 30.0% | |
| CTTATTCCATTGTTACATGA+AGG | - | chr1.3:24840674-24840693 | MS.gene063245:CDS | 30.0% | |
| CTTCATGTAACAATGGAATA+AGG | + | chr1.3:24840676-24840695 | None:intergenic | 30.0% | |
| GCAATAAATCACAATGCATT+TGG | + | chr1.3:24841537-24841556 | None:intergenic | 30.0% | |
| GCTTATGGACATATTATAAG+TGG | - | chr1.3:24842129-24842148 | MS.gene063245:intron | 30.0% | |
| GTCTTTGCTTGTTTACTTAT+TGG | - | chr1.3:24841485-24841504 | MS.gene063245:intron | 30.0% | |
| TCCCAATTGAATGAAAAAGA+TGG | + | chr1.3:24842286-24842305 | None:intergenic | 30.0% | |
| TTCATCACCTACAAATACAT+AGG | + | chr1.3:24842745-24842764 | None:intergenic | 30.0% | |
| TTGGCAGTCACATTTAATAA+TGG | - | chr1.3:24842404-24842423 | MS.gene063245:intron | 30.0% | |
| ! | AGATTTTCACTTCAAAGTCA+AGG | - | chr1.3:24840628-24840647 | MS.gene063245:CDS | 30.0% |
| ! | ATAAGCATTTGAGATGGTTT+GGG | + | chr1.3:24842169-24842188 | None:intergenic | 30.0% |
| ! | ATCCTCGAAAATGTTTTACT+CGG | + | chr1.3:24842619-24842638 | None:intergenic | 30.0% |
| ! | CCAGAAGTATATGAGAAAAT+AGG | + | chr1.3:24841587-24841606 | None:intergenic | 30.0% |
| ! | CCTATTTTCTCATATACTTC+TGG | - | chr1.3:24841584-24841603 | MS.gene063245:intron | 30.0% |
| ! | TAGTACTGAATTTGTGATCT+TGG | - | chr1.3:24842538-24842557 | MS.gene063245:CDS | 30.0% |
| ! | TTTTGACAAGAATCTCAAAG+AGG | - | chr1.3:24841085-24841104 | MS.gene063245:intron | 30.0% |
| !! | AACTGATTTGTTTCCTACTT+AGG | + | chr1.3:24842232-24842251 | None:intergenic | 30.0% |
| !! | ACTGATTTGTTTCCTACTTA+GGG | + | chr1.3:24842231-24842250 | None:intergenic | 30.0% |
| !! | CTCCATCTTTTTCATTCAAT+TGG | - | chr1.3:24842281-24842300 | MS.gene063245:intron | 30.0% |
| AAAGAGCCTTCATGTAACAA+TGG | + | chr1.3:24840683-24840702 | None:intergenic | 35.0% | |
| AAATTGGTGAGACAGAATTG+TGG | - | chr1.3:24841000-24841019 | MS.gene063245:CDS | 35.0% | |
| AACTTGTGGTTGGAAGTTAT+TGG | - | chr1.3:24842507-24842526 | MS.gene063245:CDS | 35.0% | |
| AAGAAGCAGTGAATCTTATC+AGG | - | chr1.3:24842770-24842789 | MS.gene063245:intron | 35.0% | |
| AAGCAGTATTAGGTCATGTT+TGG | - | chr1.3:24841978-24841997 | MS.gene063245:intron | 35.0% | |
| AATATCACATGGTCATCATG+TGG | - | chr1.3:24840908-24840927 | MS.gene063245:intron | 35.0% | |
| ACATGATGACCATGTGATAT+TGG | + | chr1.3:24840909-24840928 | None:intergenic | 35.0% | |
| ACTGTCATAAGCATTTGAGA+TGG | + | chr1.3:24842175-24842194 | None:intergenic | 35.0% | |
| AGTCTGACAAGTACTTATGT+CGG | - | chr1.3:24841415-24841434 | MS.gene063245:intron | 35.0% | |
| CTCGAATGGAAGAACAAAAT+AGG | - | chr1.3:24841196-24841215 | MS.gene063245:intron | 35.0% | |
| GGAATCTTTGATACTTTGGT+TGG | - | chr1.3:24841029-24841048 | MS.gene063245:intron | 35.0% | |
| GTAAGAAGAAATCATGGAGT+TGG | - | chr1.3:24840861-24840880 | MS.gene063245:intron | 35.0% | |
| GTGATACAAAGAGAGCAAAT+TGG | - | chr1.3:24840984-24841003 | MS.gene063245:CDS | 35.0% | |
| TCAGATGAAACATGCATCAT+AGG | - | chr1.3:24841730-24841749 | MS.gene063245:CDS | 35.0% | |
| TCTGTGATACCAATGTTTCT+TGG | + | chr1.3:24841878-24841897 | None:intergenic | 35.0% | |
| TGAGTCTCCTATGTATTTGT+AGG | - | chr1.3:24842735-24842754 | MS.gene063245:intron | 35.0% | |
| TGATAAGATTCACTGCTTCT+TGG | + | chr1.3:24842771-24842790 | None:intergenic | 35.0% | |
| ! | AGAACTGTTTTGTGTAGAGA+TGG | - | chr1.3:24841814-24841833 | MS.gene063245:CDS | 35.0% |
| ! | ATCAATGATGCTTTTGAGCT+TGG | - | chr1.3:24841167-24841186 | MS.gene063245:intron | 35.0% |
| ! | CATAAGCATTTGAGATGGTT+TGG | + | chr1.3:24842170-24842189 | None:intergenic | 35.0% |
| ! | TCAATGATGCTTTTGAGCTT+GGG | - | chr1.3:24841168-24841187 | MS.gene063245:intron | 35.0% |
| ! | TTCCGAGTAAAACATTTTCG+AGG | - | chr1.3:24842614-24842633 | MS.gene063245:CDS | 35.0% |
| ! | TTTCCTACTTAGGGTTTGTT+TGG | + | chr1.3:24842222-24842241 | None:intergenic | 35.0% |
| !! | AATGGCTATGTCGATTCATT+TGG | - | chr1.3:24841947-24841966 | MS.gene063245:intron | 35.0% |
| !! | ATGGCTATGTCGATTCATTT+GGG | - | chr1.3:24841948-24841967 | MS.gene063245:intron | 35.0% |
| !! | GAATTTCTATTGACTTGCAC+AGG | - | chr1.3:24840800-24840819 | MS.gene063245:intron | 35.0% |
| !! | GCTCAAAAGCATCATTGATT+TGG | + | chr1.3:24841166-24841185 | None:intergenic | 35.0% |
| !! | TTCTAAAGCTTCAGAACTTG+TGG | - | chr1.3:24842493-24842512 | MS.gene063245:CDS | 35.0% |
| !!! | TGATCTTTGTTTTTGCACCT+AGG | + | chr1.3:24841696-24841715 | None:intergenic | 35.0% |
| !!! | TGGTATCACAGACTTTTTTC+AGG | - | chr1.3:24841886-24841905 | MS.gene063245:intron | 35.0% |
| AAAGCTTCAGAACTTGTGGT+TGG | - | chr1.3:24842497-24842516 | MS.gene063245:CDS | 40.0% | |
| AGGTAATGCAACAGGTACAA+AGG | - | chr1.3:24842469-24842488 | MS.gene063245:CDS | 40.0% | |
| AGTCCAAACAAACCCTAAGT+AGG | - | chr1.3:24842216-24842235 | MS.gene063245:intron | 40.0% | |
| AGTTCTGTAATCTCCGATGT+TGG | + | chr1.3:24841800-24841819 | None:intergenic | 40.0% | |
| GAATCTTATCAGGCACATAG+AGG | - | chr1.3:24842780-24842799 | MS.gene063245:intron | 40.0% | |
| GAGACAGAATTGTGGTACTT+AGG | - | chr1.3:24841008-24841027 | MS.gene063245:CDS | 40.0% | |
| GATATTGGCATCATCCATGA+TGG | + | chr1.3:24840894-24840913 | None:intergenic | 40.0% | |
| GTGGAGCATGATTGGATTAA+TGG | - | chr1.3:24840930-24840949 | MS.gene063245:intron | 40.0% | |
| TGCTCTCTTGAGTGTTTCTT+TGG | + | chr1.3:24841671-24841690 | None:intergenic | 40.0% | |
| TGGATGATGCCAATATCACA+TGG | - | chr1.3:24840897-24840916 | MS.gene063245:intron | 40.0% | |
| TGTGAATCAGGTAATGCAAC+AGG | - | chr1.3:24842461-24842480 | MS.gene063245:CDS | 40.0% | |
| TTTGTGATCTTGGCAAGCAA+TGG | - | chr1.3:24842548-24842567 | MS.gene063245:CDS | 40.0% | |
| ! | AGATGGTTTGGGAGAACTTA+TGG | + | chr1.3:24842158-24842177 | None:intergenic | 40.0% |
| !! | ATGTCGATTCATTTGGGAGA+TGG | - | chr1.3:24841954-24841973 | MS.gene063245:intron | 40.0% |
| AAACTCGTGCTAGCCAACAT+CGG | - | chr1.3:24841784-24841803 | MS.gene063245:CDS | 45.0% | |
| ATCACATGGTCATCATGTGG+TGG | - | chr1.3:24840911-24840930 | MS.gene063245:intron | 45.0% | |
| CGGGTGAAACTCTCATGTTT+AGG | - | chr1.3:24840828-24840847 | MS.gene063245:intron | 45.0% | |
| GCTAATTCAGTGCTGCATTC+TGG | + | chr1.3:24842262-24842281 | None:intergenic | 45.0% | |
| GGCGTAGCTTATCAGACAAT+TGG | - | chr1.3:24841835-24841854 | MS.gene063245:CDS | 45.0% | |
| GGGAGATGGAAAGCAGTATT+AGG | - | chr1.3:24841968-24841987 | MS.gene063245:intron | 45.0% | |
| TCTTGGCAAGCAATGGCATA+TGG | - | chr1.3:24842555-24842574 | MS.gene063245:CDS | 45.0% | |
| ! | AAACACTCTGCTGCTTCTTG+TGG | + | chr1.3:24842808-24842827 | None:intergenic | 45.0% |
| ! | ACAAGAAGCAGCAGAGTGTT+TGG | - | chr1.3:24842807-24842826 | MS.gene063245:intron | 45.0% |
| ! | ACACTCAAGAGAGCATACCT+AGG | - | chr1.3:24841676-24841695 | MS.gene063245:CDS | 45.0% |
| ! | ATCATGTGGTGGAGCATGAT+TGG | - | chr1.3:24840922-24840941 | MS.gene063245:intron | 45.0% |
| ! | GTGTTTGGCTAAGGAAGCAT+TGG | - | chr1.3:24842822-24842841 | MS.gene063245:intron | 45.0% |
| !! | ATTGACTTGCACAGGCACTT+CGG | - | chr1.3:24840808-24840827 | MS.gene063245:intron | 45.0% |
| !! | TGGCTAAGGAAGCATTGGTT+AGG | - | chr1.3:24842827-24842846 | MS.gene063245:intron | 45.0% |
| !!! | GTTTTTTTTAAAAAATTAAT+AGG | - | chr1.3:24842691-24842710 | MS.gene063245:intron | 5.0% |
| GAGTTGGAAGCAAGCCATCA+TGG | - | chr1.3:24840877-24840896 | MS.gene063245:intron | 50.0% | |
| ! | AGCAGCAGAGTGTTTGGCTA+AGG | - | chr1.3:24842813-24842832 | MS.gene063245:intron | 50.0% |
| !! | TTGACTTGCACAGGCACTTC+GGG | - | chr1.3:24840809-24840828 | MS.gene063245:intron | 50.0% |
| GAGCTTGGGAGACTCTCGAA+TGG | - | chr1.3:24841182-24841201 | MS.gene063245:intron | 55.0% | |
| GGCAAGCAATGGCATATGGC+AGG | - | chr1.3:24842559-24842578 | MS.gene063245:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 24840617 | 24842894 | 24840617 | ID=MS.gene063245 |
| chr1.3 | mRNA | 24840617 | 24842894 | 24840617 | ID=MS.gene063245.t1;Parent=MS.gene063245 |
| chr1.3 | exon | 24842862 | 24842894 | 24842862 | ID=MS.gene063245.t1.exon1;Parent=MS.gene063245.t1 |
| chr1.3 | CDS | 24842862 | 24842894 | 24842862 | ID=cds.MS.gene063245.t1;Parent=MS.gene063245.t1 |
| chr1.3 | exon | 24842405 | 24842689 | 24842405 | ID=MS.gene063245.t1.exon2;Parent=MS.gene063245.t1 |
| chr1.3 | CDS | 24842405 | 24842689 | 24842405 | ID=cds.MS.gene063245.t1;Parent=MS.gene063245.t1 |
| chr1.3 | exon | 24841604 | 24841862 | 24841604 | ID=MS.gene063245.t1.exon3;Parent=MS.gene063245.t1 |
| chr1.3 | CDS | 24841604 | 24841862 | 24841604 | ID=cds.MS.gene063245.t1;Parent=MS.gene063245.t1 |
| chr1.3 | exon | 24840931 | 24841028 | 24840931 | ID=MS.gene063245.t1.exon4;Parent=MS.gene063245.t1 |
| chr1.3 | CDS | 24840931 | 24841028 | 24840931 | ID=cds.MS.gene063245.t1;Parent=MS.gene063245.t1 |
| chr1.3 | exon | 24840617 | 24840754 | 24840617 | ID=MS.gene063245.t1.exon5;Parent=MS.gene063245.t1 |
| chr1.3 | CDS | 24840617 | 24840754 | 24840617 | ID=cds.MS.gene063245.t1;Parent=MS.gene063245.t1 |
| Gene Sequence |
| Protein sequence |
