Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063478.t1 | XP_013457964.1 | 95.8 | 519 | 12 | 5 | 1 | 512 | 1 | 516 | 3.30E-253 | 884 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063478.t1 | Q9M202 | 37.2 | 188 | 73 | 6 | 312 | 490 | 133 | 284 | 2.8e-19 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063478.t1 | A0A072V1J8 | 95.8 | 519 | 12 | 5 | 1 | 512 | 1 | 516 | 2.4e-253 | 884.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene063478.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene063478 | 0.827736 | 1.33E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene063478 | 0.838897 | 2.19E-57 | -1.69E-46 |
| MS.gene049711 | MS.gene063478 | 0.843235 | 1.59E-58 | -1.69E-46 |
| MS.gene049807 | MS.gene063478 | 0.819855 | 9.33E-53 | -1.69E-46 |
| MS.gene051201 | MS.gene063478 | 0.827062 | 1.93E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene063478 | 0.8082 | 3.48E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene063478 | 0.83213 | 1.13E-55 | -1.69E-46 |
| MS.gene051664 | MS.gene063478 | 0.809301 | 2.02E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene063478 | 0.8213 | 4.34E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene063478 | 0.829591 | 4.73E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene063478 | 0.804402 | 2.20E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene063478 | 0.823339 | 1.46E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene063478 | 0.837295 | 5.66E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene063478 | 0.811557 | 6.59E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene063478 | 0.804894 | 1.73E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene063478 | 0.801524 | 8.65E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene063478 | 0.834123 | 3.60E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene063478 | 0.832338 | 1.00E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene063478 | 0.826768 | 2.26E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene063478 | 0.828094 | 1.09E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene063478 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene054991 | MS.gene063478 | 0.833068 | 6.59E-56 | -1.69E-46 |
| MS.gene055083 | MS.gene063478 | 0.817649 | 2.96E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene063478 | 0.824756 | 6.79E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene063478 | 0.813495 | 2.49E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene063478 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene063478 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene063478 | 0.815287 | 9.99E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene063478 | -0.81101 | 8.67E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene063478 | 0.805666 | 1.20E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene063478 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene063478 | 0.815811 | 7.64E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene063478 | 0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene057132 | MS.gene063478 | 0.803134 | 4.03E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene063478 | 0.808456 | 3.07E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene063478 | 0.822165 | 2.74E-53 | -1.69E-46 |
| MS.gene05894 | MS.gene063478 | 0.821921 | 3.12E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene063478 | 0.808549 | 2.93E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene063478 | 0.80846 | 3.06E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene063478 | 0.808122 | 3.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063478.t1 | MTR_4g109340 | 95.761 | 519 | 12 | 5 | 1 | 512 | 1 | 516 | 0.0 | 1004 |
| MS.gene063478.t1 | MTR_3g023760 | 38.322 | 441 | 188 | 16 | 1 | 395 | 1 | 403 | 5.83e-62 | 210 |
| MS.gene063478.t1 | MTR_3g023760 | 34.132 | 167 | 69 | 6 | 378 | 512 | 307 | 464 | 1.12e-15 | 79.7 |
| MS.gene063478.t1 | MTR_4g028610 | 38.889 | 162 | 75 | 5 | 343 | 484 | 224 | 381 | 3.10e-25 | 108 |
| MS.gene063478.t1 | MTR_4g028610 | 26.400 | 375 | 220 | 14 | 4 | 368 | 6 | 334 | 1.12e-15 | 80.1 |
| MS.gene063478.t1 | MTR_0160s0030 | 37.059 | 170 | 63 | 4 | 329 | 493 | 218 | 348 | 1.53e-24 | 105 |
| MS.gene063478.t1 | MTR_4g027440 | 39.103 | 156 | 53 | 6 | 343 | 483 | 217 | 345 | 1.15e-21 | 97.1 |
| MS.gene063478.t1 | MTR_5g099040 | 46.491 | 114 | 47 | 5 | 345 | 453 | 129 | 233 | 2.85e-19 | 88.6 |
| MS.gene063478.t1 | MTR_5g062300 | 44.643 | 112 | 36 | 5 | 345 | 453 | 118 | 206 | 9.05e-18 | 83.2 |
| MS.gene063478.t1 | MTR_4g082980 | 38.931 | 131 | 61 | 3 | 10 | 125 | 7 | 133 | 1.87e-17 | 85.1 |
| MS.gene063478.t1 | MTR_4g082980 | 50.000 | 58 | 27 | 1 | 431 | 486 | 393 | 450 | 2.76e-12 | 69.3 |
| MS.gene063478.t1 | MTR_1g090703 | 37.342 | 158 | 73 | 6 | 346 | 486 | 156 | 304 | 1.57e-15 | 78.6 |
| MS.gene063478.t1 | MTR_1g018420 | 38.356 | 146 | 54 | 7 | 346 | 485 | 81 | 196 | 2.32e-14 | 73.2 |
| MS.gene063478.t1 | MTR_2g084315 | 36.257 | 171 | 69 | 6 | 346 | 490 | 125 | 281 | 2.76e-14 | 73.9 |
| MS.gene063478.t1 | MTR_4g057230 | 38.562 | 153 | 82 | 3 | 346 | 486 | 113 | 265 | 4.64e-14 | 73.2 |
| MS.gene063478.t1 | MTR_1g062780 | 33.503 | 197 | 94 | 9 | 328 | 497 | 94 | 280 | 1.62e-12 | 68.6 |
| MS.gene063478.t1 | MTR_4g100860 | 51.613 | 62 | 26 | 2 | 432 | 489 | 247 | 308 | 6.02e-12 | 67.0 |
| MS.gene063478.t1 | MTR_3g102980 | 34.483 | 145 | 56 | 5 | 347 | 482 | 87 | 201 | 6.57e-12 | 65.9 |
| MS.gene063478.t1 | MTR_1g106730 | 40.187 | 107 | 27 | 4 | 347 | 453 | 84 | 153 | 8.39e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063478.t1 | AT2G45120 | 44.828 | 174 | 52 | 7 | 323 | 490 | 173 | 308 | 7.37e-30 | 119 |
| MS.gene063478.t1 | AT3G60580 | 41.892 | 148 | 47 | 5 | 343 | 487 | 170 | 281 | 6.74e-24 | 102 |
| MS.gene063478.t1 | AT1G02030 | 43.624 | 149 | 38 | 5 | 342 | 487 | 155 | 260 | 1.58e-21 | 94.7 |
| MS.gene063478.t1 | AT4G35280 | 36.986 | 146 | 57 | 2 | 345 | 490 | 161 | 271 | 1.93e-21 | 94.7 |
| MS.gene063478.t1 | AT2G17180 | 39.310 | 145 | 54 | 6 | 345 | 488 | 147 | 258 | 8.96e-18 | 84.0 |
| MS.gene063478.t1 | AT1G02040 | 38.926 | 149 | 75 | 3 | 346 | 488 | 150 | 288 | 2.90e-17 | 83.2 |
| MS.gene063478.t1 | AT2G28200 | 36.875 | 160 | 64 | 6 | 346 | 482 | 115 | 260 | 1.23e-15 | 77.8 |
| MS.gene063478.t1 | AT5G03510 | 34.395 | 157 | 78 | 4 | 344 | 486 | 116 | 261 | 3.81e-15 | 76.6 |
| MS.gene063478.t1 | AT1G26610 | 55.385 | 65 | 27 | 2 | 423 | 486 | 392 | 455 | 4.00e-15 | 78.2 |
| MS.gene063478.t1 | AT5G04390 | 42.727 | 110 | 50 | 5 | 346 | 453 | 153 | 251 | 2.02e-14 | 75.1 |
| MS.gene063478.t1 | AT5G67450 | 38.889 | 108 | 48 | 3 | 346 | 453 | 97 | 186 | 1.75e-12 | 67.8 |
| MS.gene063478.t1 | AT5G56200 | 35.333 | 150 | 72 | 4 | 327 | 470 | 317 | 447 | 3.68e-12 | 68.9 |
| MS.gene063478.t1 | AT3G10470 | 36.111 | 108 | 63 | 2 | 346 | 453 | 182 | 283 | 1.57e-11 | 66.6 |
Find 66 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGAAAAGTTTAGAGATTT+TGG | 0.115530 | 8.4:+18220031 | MS.gene063478:CDS |
| CCCTTTGAACTTCAAATTCT+TGG | 0.126081 | 8.4:-18220012 | None:intergenic |
| CTCTTTCTCCATGTCTTCTT+TGG | 0.138997 | 8.4:-18219489 | None:intergenic |
| CATTGAATATGTTCAAAATA+TGG | 0.183168 | 8.4:+18220493 | MS.gene063478:CDS |
| GAAGATTCAGAAGTTGAAAA+TGG | 0.193847 | 8.4:+18220149 | MS.gene063478:CDS |
| TGAGTGTCCAATTTGCTTTA+AGG | 0.196640 | 8.4:+18220559 | MS.gene063478:CDS |
| ATGCCCTTTAATCTTCTTCT+TGG | 0.204703 | 8.4:-18220534 | None:intergenic |
| TTTCCTTGTGGTAGATCTTT+AGG | 0.228997 | 8.4:+18219324 | MS.gene063478:CDS |
| CTACAAGTGCCTCTTGATTA+TGG | 0.245683 | 8.4:-18220778 | None:intergenic |
| ATGAGCTTGCTTTCAGTTGT+TGG | 0.246397 | 8.4:-18220452 | None:intergenic |
| CACTCTTGGCAAGCTTTGTT+TGG | 0.254693 | 8.4:+18219579 | MS.gene063478:CDS |
| AGAAAGAGTTTCTAACAGTT+TGG | 0.300359 | 8.4:+18219626 | MS.gene063478:CDS |
| GATTCCAAGAAGAAGATTAA+AGG | 0.330354 | 8.4:+18220530 | MS.gene063478:CDS |
| ATGAAATCACTGCTCCAAAT+AGG | 0.362876 | 8.4:+18219697 | MS.gene063478:CDS |
| GGAACAAGTTCCACAGATTA+GGG | 0.363512 | 8.4:+18220664 | MS.gene063478:CDS |
| GAGAACAAGAAGTGTGAGTT+AGG | 0.363812 | 8.4:+18219978 | MS.gene063478:CDS |
| TTTCAATCTGGTCAAGCCTT+AGG | 0.371292 | 8.4:+18220584 | MS.gene063478:CDS |
| TTTCATTCTTATCAAGCTCT+TGG | 0.373280 | 8.4:+18220329 | MS.gene063478:CDS |
| AGGAACAAGTTCCACAGATT+AGG | 0.383607 | 8.4:+18220663 | MS.gene063478:CDS |
| TATCAAAGTCAGCTACTATA+AGG | 0.397815 | 8.4:+18220204 | MS.gene063478:CDS |
| ATTCCAAGAAGAAGATTAAA+GGG | 0.409460 | 8.4:+18220531 | MS.gene063478:CDS |
| GGATTCAAGATGATCAAAAC+TGG | 0.409796 | 8.4:+18220065 | MS.gene063478:CDS |
| ATTGAATATGTTCAAAATAT+GGG | 0.416959 | 8.4:+18220494 | MS.gene063478:CDS |
| CCAAGAATTTGAAGTTCAAA+GGG | 0.426487 | 8.4:+18220012 | MS.gene063478:CDS |
| GTTTGGAGGATCAAGATTCA+TGG | 0.428070 | 8.4:+18219643 | MS.gene063478:CDS |
| AAGATTCAGAAGTTGAAAAT+GGG | 0.428326 | 8.4:+18220150 | MS.gene063478:CDS |
| GGATTTGAGAAACCCTTTGA+TGG | 0.429389 | 8.4:-18220093 | None:intergenic |
| TCCAAGAATTTGAAGTTCAA+AGG | 0.432409 | 8.4:+18220011 | MS.gene063478:CDS |
| CATAATCAAGAGGCACTTGT+AGG | 0.439216 | 8.4:+18220779 | MS.gene063478:CDS |
| TTACTTTGAAGCTCGATCTT+CGG | 0.442879 | 8.4:+18219908 | MS.gene063478:CDS |
| AAACTGGAGTTTCCATCAAA+GGG | 0.452059 | 8.4:+18220081 | MS.gene063478:CDS |
| GGTTCTGAAGCTGCAACTAA+TGG | 0.470954 | 8.4:+18219444 | MS.gene063478:CDS |
| AGCCTCTTCTTCTGTTTCTG+AGG | 0.471972 | 8.4:+18219773 | MS.gene063478:CDS |
| AATGGGAAAAGCAGAGTCAA+TGG | 0.477352 | 8.4:+18220167 | MS.gene063478:CDS |
| CTTTCTTCCTCAGTAGCAGC+AGG | 0.478387 | 8.4:-18220707 | None:intergenic |
| TGGACATAAAAGATCTCATA+TGG | 0.479948 | 8.4:+18220607 | MS.gene063478:CDS |
| CATTCTTATCAAGCTCTTGG+AGG | 0.487098 | 8.4:+18220332 | MS.gene063478:CDS |
| AAAACTGGAGTTTCCATCAA+AGG | 0.487569 | 8.4:+18220080 | MS.gene063478:CDS |
| AGATCTCATATGGTTGCTAC+TGG | 0.491040 | 8.4:+18220617 | MS.gene063478:CDS |
| AAGAGTTTCTAACAGTTTGG+AGG | 0.513244 | 8.4:+18219629 | MS.gene063478:CDS |
| AGACCTTGGTGGATAGTTGA+AGG | 0.528869 | 8.4:+18220752 | MS.gene063478:CDS |
| TAATCTTCCTGCTGCTACTG+AGG | 0.529053 | 8.4:+18220700 | MS.gene063478:CDS |
| GCTTGATTATCTGTCTACAT+TGG | 0.549776 | 8.4:+18220127 | MS.gene063478:CDS |
| AACCTCAGAAACAGAAGAAG+AGG | 0.551316 | 8.4:-18219775 | None:intergenic |
| TTAGTAGAGATGTTAGTCCT+TGG | 0.555862 | 8.4:+18219838 | MS.gene063478:CDS |
| GACAAATTCTGCAAAGAGTG+TGG | 0.556631 | 8.4:+18219546 | MS.gene063478:CDS |
| CTGATTCTAACAGACCTTGG+TGG | 0.557324 | 8.4:+18220741 | MS.gene063478:CDS |
| CAATCTGGTCAAGCCTTAGG+TGG | 0.558498 | 8.4:+18220587 | MS.gene063478:CDS |
| GCTGCAACTAATGGTAGCTA+TGG | 0.563432 | 8.4:+18219453 | MS.gene063478:CDS |
| GAGAGAATCCAAAGAAGACA+TGG | 0.564730 | 8.4:+18219481 | MS.gene063478:CDS |
| CCTTGTGGTAGATCTTTAGG+AGG | 0.573424 | 8.4:+18219327 | MS.gene063478:CDS |
| CAAGAGGCACTTGTAGGGTA+CGG | 0.590543 | 8.4:+18220785 | MS.gene063478:CDS |
| ATGCTGATTCTAACAGACCT+TGG | 0.596589 | 8.4:+18220738 | MS.gene063478:CDS |
| TCAAGAAAGTCCCTAATCTG+TGG | 0.600941 | 8.4:-18220674 | None:intergenic |
| ATAATCAAGAGGCACTTGTA+GGG | 0.602596 | 8.4:+18220780 | MS.gene063478:CDS |
| TGAGAGTAGAGTTGTACTTG+AGG | 0.630352 | 8.4:+18220643 | MS.gene063478:CDS |
| AGATAATGAAGACCACTCCA+AGG | 0.644754 | 8.4:-18219855 | None:intergenic |
| TCATGATCATGATCATGATG+AGG | 0.648539 | 8.4:-18220242 | None:intergenic |
| GATCTTTAGGAGGTCACATG+AGG | 0.656622 | 8.4:+18219337 | MS.gene063478:CDS |
| TGAAGGCAACCATAATCAAG+AGG | 0.657701 | 8.4:+18220769 | MS.gene063478:CDS |
| CCTCCTAAAGATCTACCACA+AGG | 0.657873 | 8.4:-18219327 | None:intergenic |
| AACAAGAACAAGGTACAACA+TGG | 0.663025 | 8.4:+18219737 | MS.gene063478:CDS |
| AGAGATGTTAGTCCTTGGAG+TGG | 0.673173 | 8.4:+18219843 | MS.gene063478:CDS |
| GATCAAAGAGAACAAGAACA+AGG | 0.701444 | 8.4:+18219727 | MS.gene063478:CDS |
| TGTAGCAAAAGCTTTCCTTG+TGG | 0.721402 | 8.4:+18219312 | MS.gene063478:CDS |
| TTGCCTTCAACTATCCACCA+AGG | 0.733273 | 8.4:-18220755 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATATGTTCAAAATAT+GGG | + | chr8.4:18220494-18220513 | MS.gene063478:CDS | 15.0% |
| !! | CATTGAATATGTTCAAAATA+TGG | + | chr8.4:18220493-18220512 | MS.gene063478:CDS | 20.0% |
| !!! | ATCAAGAATTTTAATAAGAG+AGG | + | chr8.4:18220275-18220294 | MS.gene063478:CDS | 20.0% |
| ! | AAGATTCAGAAGTTGAAAAT+GGG | + | chr8.4:18220150-18220169 | MS.gene063478:CDS | 25.0% |
| ! | ACAAAAAAGAATGATAGCAT+TGG | + | chr8.4:18219423-18219442 | MS.gene063478:CDS | 25.0% |
| ! | ATTCCAAGAAGAAGATTAAA+GGG | + | chr8.4:18220531-18220550 | MS.gene063478:CDS | 25.0% |
| ! | CTAGTCATAAAAAGAACAAA+GGG | + | chr8.4:18220363-18220382 | MS.gene063478:CDS | 25.0% |
| ! | TGAAAAACCTTAAAGCAAAT+TGG | - | chr8.4:18220569-18220588 | None:intergenic | 25.0% |
| !! | TTTGATCTTTTCTTCCTATT+TGG | - | chr8.4:18219714-18219733 | None:intergenic | 25.0% |
| AGAAAGAGTTTCTAACAGTT+TGG | + | chr8.4:18219626-18219645 | MS.gene063478:CDS | 30.0% | |
| GAAGATTCAGAAGTTGAAAA+TGG | + | chr8.4:18220149-18220168 | MS.gene063478:CDS | 30.0% | |
| GATTCCAAGAAGAAGATTAA+AGG | + | chr8.4:18220530-18220549 | MS.gene063478:CDS | 30.0% | |
| GCTAGTCATAAAAAGAACAA+AGG | + | chr8.4:18220362-18220381 | MS.gene063478:CDS | 30.0% | |
| TATCAAAGTCAGCTACTATA+AGG | + | chr8.4:18220204-18220223 | MS.gene063478:CDS | 30.0% | |
| TGGACATAAAAGATCTCATA+TGG | + | chr8.4:18220607-18220626 | MS.gene063478:CDS | 30.0% | |
| TTTCATTCTTATCAAGCTCT+TGG | + | chr8.4:18220329-18220348 | MS.gene063478:CDS | 30.0% | |
| ! | AGGGAAAAGTTTAGAGATTT+TGG | + | chr8.4:18220031-18220050 | MS.gene063478:CDS | 30.0% |
| ! | ATAATCAAGCTCAGATTTTG+TGG | - | chr8.4:18220117-18220136 | None:intergenic | 30.0% |
| ! | CCAAGAATTTGAAGTTCAAA+GGG | + | chr8.4:18220012-18220031 | MS.gene063478:CDS | 30.0% |
| ! | TCCAAGAATTTGAAGTTCAA+AGG | + | chr8.4:18220011-18220030 | MS.gene063478:CDS | 30.0% |
| !!! | TGCTTTAAGGTTTTTCAATC+TGG | + | chr8.4:18220572-18220591 | MS.gene063478:CDS | 30.0% |
| AAAACTGGAGTTTCCATCAA+AGG | + | chr8.4:18220080-18220099 | MS.gene063478:CDS | 35.0% | |
| AAACTGGAGTTTCCATCAAA+GGG | + | chr8.4:18220081-18220100 | MS.gene063478:CDS | 35.0% | |
| AACAAGAACAAGGTACAACA+TGG | + | chr8.4:18219737-18219756 | MS.gene063478:CDS | 35.0% | |
| AAGAGTTTCTAACAGTTTGG+AGG | + | chr8.4:18219629-18219648 | MS.gene063478:CDS | 35.0% | |
| ATGAAATCACTGCTCCAAAT+AGG | + | chr8.4:18219697-18219716 | MS.gene063478:CDS | 35.0% | |
| ATGCCCTTTAATCTTCTTCT+TGG | - | chr8.4:18220537-18220556 | None:intergenic | 35.0% | |
| CCCTTTGAACTTCAAATTCT+TGG | - | chr8.4:18220015-18220034 | None:intergenic | 35.0% | |
| GATCAAAGAGAACAAGAACA+AGG | + | chr8.4:18219727-18219746 | MS.gene063478:CDS | 35.0% | |
| GCTTGATTATCTGTCTACAT+TGG | + | chr8.4:18220127-18220146 | MS.gene063478:CDS | 35.0% | |
| GGATTCAAGATGATCAAAAC+TGG | + | chr8.4:18220065-18220084 | MS.gene063478:CDS | 35.0% | |
| TCATGATCATGATCATGATG+AGG | - | chr8.4:18220245-18220264 | None:intergenic | 35.0% | |
| TTAGTAGAGATGTTAGTCCT+TGG | + | chr8.4:18219838-18219857 | MS.gene063478:CDS | 35.0% | |
| TTTCCTTGTGGTAGATCTTT+AGG | + | chr8.4:18219324-18219343 | MS.gene063478:CDS | 35.0% | |
| ! | AGATCTTTTATGTCCACCTA+AGG | - | chr8.4:18220603-18220622 | None:intergenic | 35.0% |
| ! | GAGATTTTGGATGCTGAAAA+AGG | + | chr8.4:18220044-18220063 | MS.gene063478:CDS | 35.0% |
| ! | GTGGAAAATGTTTTCACTCT+TGG | + | chr8.4:18219565-18219584 | MS.gene063478:CDS | 35.0% |
| ! | TGAGTGTCCAATTTGCTTTA+AGG | + | chr8.4:18220559-18220578 | MS.gene063478:CDS | 35.0% |
| !! | ATAATCAAGAGGCACTTGTA+GGG | + | chr8.4:18220780-18220799 | MS.gene063478:CDS | 35.0% |
| !! | TTACTTTGAAGCTCGATCTT+CGG | + | chr8.4:18219908-18219927 | MS.gene063478:CDS | 35.0% |
| AACCTCAGAAACAGAAGAAG+AGG | - | chr8.4:18219778-18219797 | None:intergenic | 40.0% | |
| AATGGGAAAAGCAGAGTCAA+TGG | + | chr8.4:18220167-18220186 | MS.gene063478:CDS | 40.0% | |
| AGATAATGAAGACCACTCCA+AGG | - | chr8.4:18219858-18219877 | None:intergenic | 40.0% | |
| AGATCTCATATGGTTGCTAC+TGG | + | chr8.4:18220617-18220636 | MS.gene063478:CDS | 40.0% | |
| AGGAACAAGTTCCACAGATT+AGG | + | chr8.4:18220663-18220682 | MS.gene063478:CDS | 40.0% | |
| CATTCTTATCAAGCTCTTGG+AGG | + | chr8.4:18220332-18220351 | MS.gene063478:CDS | 40.0% | |
| CTACAAGTGCCTCTTGATTA+TGG | - | chr8.4:18220781-18220800 | None:intergenic | 40.0% | |
| CTCTTTCTCCATGTCTTCTT+TGG | - | chr8.4:18219492-18219511 | None:intergenic | 40.0% | |
| GACAAATTCTGCAAAGAGTG+TGG | + | chr8.4:18219546-18219565 | MS.gene063478:CDS | 40.0% | |
| GAGAGAATCCAAAGAAGACA+TGG | + | chr8.4:18219481-18219500 | MS.gene063478:CDS | 40.0% | |
| GGAACAAGTTCCACAGATTA+GGG | + | chr8.4:18220664-18220683 | MS.gene063478:CDS | 40.0% | |
| GGATTTGAGAAACCCTTTGA+TGG | - | chr8.4:18220096-18220115 | None:intergenic | 40.0% | |
| GTTTGGAGGATCAAGATTCA+TGG | + | chr8.4:18219643-18219662 | MS.gene063478:CDS | 40.0% | |
| TCAAGAAAGTCCCTAATCTG+TGG | - | chr8.4:18220677-18220696 | None:intergenic | 40.0% | |
| TGAAGGCAACCATAATCAAG+AGG | + | chr8.4:18220769-18220788 | MS.gene063478:CDS | 40.0% | |
| TGAGAGTAGAGTTGTACTTG+AGG | + | chr8.4:18220643-18220662 | MS.gene063478:CDS | 40.0% | |
| TGTAGCAAAAGCTTTCCTTG+TGG | + | chr8.4:18219312-18219331 | MS.gene063478:CDS | 40.0% | |
| TTTCAATCTGGTCAAGCCTT+AGG | + | chr8.4:18220584-18220603 | MS.gene063478:CDS | 40.0% | |
| ! | ATGAGCTTGCTTTCAGTTGT+TGG | - | chr8.4:18220455-18220474 | None:intergenic | 40.0% |
| ! | GAGAACAAGAAGTGTGAGTT+AGG | + | chr8.4:18219978-18219997 | MS.gene063478:CDS | 40.0% |
| !! | ATGCTGATTCTAACAGACCT+TGG | + | chr8.4:18220738-18220757 | MS.gene063478:CDS | 40.0% |
| !! | CATAATCAAGAGGCACTTGT+AGG | + | chr8.4:18220779-18220798 | MS.gene063478:CDS | 40.0% |
| AGAGATGTTAGTCCTTGGAG+TGG | + | chr8.4:18219843-18219862 | MS.gene063478:CDS | 45.0% | |
| CCTCCTAAAGATCTACCACA+AGG | - | chr8.4:18219330-18219349 | None:intergenic | 45.0% | |
| CCTTGTGGTAGATCTTTAGG+AGG | + | chr8.4:18219327-18219346 | MS.gene063478:CDS | 45.0% | |
| CTGATTCTAACAGACCTTGG+TGG | + | chr8.4:18220741-18220760 | MS.gene063478:CDS | 45.0% | |
| GCTGCAACTAATGGTAGCTA+TGG | + | chr8.4:18219453-18219472 | MS.gene063478:CDS | 45.0% | |
| TAATCTTCCTGCTGCTACTG+AGG | + | chr8.4:18220700-18220719 | MS.gene063478:CDS | 45.0% | |
| TTGCCTTCAACTATCCACCA+AGG | - | chr8.4:18220758-18220777 | None:intergenic | 45.0% | |
| ! | AGACCTTGGTGGATAGTTGA+AGG | + | chr8.4:18220752-18220771 | MS.gene063478:CDS | 45.0% |
| ! | GATCTTTAGGAGGTCACATG+AGG | + | chr8.4:18219337-18219356 | MS.gene063478:CDS | 45.0% |
| !! | AGCCTCTTCTTCTGTTTCTG+AGG | + | chr8.4:18219773-18219792 | MS.gene063478:CDS | 45.0% |
| !! | CACTCTTGGCAAGCTTTGTT+TGG | + | chr8.4:18219579-18219598 | MS.gene063478:CDS | 45.0% |
| !! | GGTTCTGAAGCTGCAACTAA+TGG | + | chr8.4:18219444-18219463 | MS.gene063478:CDS | 45.0% |
| CAATCTGGTCAAGCCTTAGG+TGG | + | chr8.4:18220587-18220606 | MS.gene063478:CDS | 50.0% | |
| CTTTCTTCCTCAGTAGCAGC+AGG | - | chr8.4:18220710-18220729 | None:intergenic | 50.0% | |
| !! | CAAGAGGCACTTGTAGGGTA+CGG | + | chr8.4:18220785-18220804 | MS.gene063478:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 18219267 | 18220823 | 18219267 | ID=MS.gene063478 |
| chr8.4 | mRNA | 18219267 | 18220823 | 18219267 | ID=MS.gene063478.t1;Parent=MS.gene063478 |
| chr8.4 | exon | 18219267 | 18220823 | 18219267 | ID=MS.gene063478.t1.exon1;Parent=MS.gene063478.t1 |
| chr8.4 | CDS | 18219267 | 18220823 | 18219267 | ID=cds.MS.gene063478.t1;Parent=MS.gene063478.t1 |
| Gene Sequence |
| Protein sequence |
