Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066836.t1 | XP_003601790.1 | 89.2 | 203 | 20 | 1 | 1 | 201 | 1 | 203 | 1.80E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066836.t1 | P92792 | 58.9 | 192 | 78 | 1 | 5 | 195 | 4 | 195 | 1.2e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066836.t1 | G7JBZ8 | 89.2 | 203 | 20 | 1 | 1 | 201 | 1 | 203 | 1.3e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene066836 | 0.800874 | 1.17E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene066836 | 0.806674 | 7.33E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene066836 | 0.829215 | 5.83E-55 | -1.69E-46 |
| MS.gene05134 | MS.gene066836 | 0.813787 | 2.14E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene066836 | 0.843574 | 1.29E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene066836 | 0.852708 | 3.87E-61 | -1.69E-46 |
| MS.gene052434 | MS.gene066836 | 0.841522 | 4.52E-58 | -1.69E-46 |
| MS.gene053058 | MS.gene066836 | 0.830773 | 2.43E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene066836 | 0.80403 | 2.63E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene066836 | 0.803763 | 2.99E-49 | -1.69E-46 |
| MS.gene054658 | MS.gene066836 | 0.812057 | 5.13E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene066836 | 0.850417 | 1.72E-60 | -1.69E-46 |
| MS.gene055603 | MS.gene066836 | 0.805032 | 1.62E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene066836 | 0.802497 | 5.46E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene066836 | 0.837017 | 6.66E-57 | -1.69E-46 |
| MS.gene056605 | MS.gene066836 | 0.823341 | 1.46E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene066836 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene066836 | 0.858839 | 6.25E-63 | -1.69E-46 |
| MS.gene057140 | MS.gene066836 | 0.807348 | 5.28E-50 | -1.69E-46 |
| MS.gene05781 | MS.gene066836 | 0.807319 | 5.36E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene066836 | 0.812661 | 3.79E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene066836 | 0.807284 | 5.45E-50 | -1.69E-46 |
| MS.gene058976 | MS.gene066836 | 0.813529 | 2.44E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene066836 | 0.828328 | 9.55E-55 | -1.69E-46 |
| MS.gene059830 | MS.gene066836 | 0.821908 | 3.14E-53 | -1.69E-46 |
| MS.gene059935 | MS.gene066836 | 0.801681 | 8.03E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene066836 | 0.802805 | 4.71E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene066836 | 0.833962 | 3.94E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene066836 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene066836 | 0.822048 | 2.92E-53 | -1.69E-46 |
| MS.gene060763 | MS.gene066836 | 0.829615 | 4.66E-55 | -1.69E-46 |
| MS.gene060830 | MS.gene066836 | 0.854038 | 1.61E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066836.t1 | MTR_3g085410 | 95.074 | 203 | 8 | 1 | 1 | 201 | 1 | 203 | 2.28e-144 | 400 |
| MS.gene066836.t1 | MTR_6g024140 | 58.883 | 197 | 79 | 1 | 1 | 195 | 1 | 197 | 2.15e-81 | 241 |
| MS.gene066836.t1 | MTR_3g085420 | 46.617 | 133 | 43 | 4 | 1 | 130 | 6 | 113 | 1.32e-27 | 105 |
| MS.gene066836.t1 | MTR_6g044560 | 41.259 | 143 | 83 | 1 | 21 | 162 | 21 | 163 | 3.42e-25 | 102 |
| MS.gene066836.t1 | MTR_6g012540 | 38.760 | 129 | 70 | 3 | 7 | 132 | 6 | 128 | 6.09e-21 | 87.4 |
| MS.gene066836.t1 | MTR_6g016250 | 36.486 | 148 | 79 | 3 | 21 | 165 | 8 | 143 | 4.59e-18 | 78.2 |
| MS.gene066836.t1 | MTR_7g099160 | 35.802 | 162 | 98 | 4 | 1 | 159 | 3 | 161 | 7.07e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066836.t1 | AT1G27390 | 51.415 | 212 | 86 | 2 | 1 | 199 | 1 | 208 | 3.89e-67 | 205 |
| MS.gene066836.t1 | AT3G27080 | 49.500 | 200 | 97 | 2 | 4 | 200 | 3 | 201 | 6.61e-65 | 199 |
| MS.gene066836.t1 | AT5G40930 | 49.735 | 189 | 83 | 3 | 10 | 198 | 9 | 185 | 3.22e-56 | 176 |
| MS.gene066836.t1 | AT3G27070 | 49.189 | 185 | 91 | 2 | 10 | 192 | 3 | 186 | 7.55e-52 | 165 |
| MS.gene066836.t1 | AT1G27390 | 51.923 | 156 | 58 | 2 | 57 | 199 | 1 | 152 | 4.30e-47 | 152 |
| MS.gene066836.t1 | AT5G40930 | 50.000 | 148 | 63 | 2 | 10 | 157 | 9 | 145 | 9.86e-41 | 136 |
| MS.gene066836.t1 | AT3G27070 | 45.522 | 134 | 70 | 2 | 61 | 192 | 114 | 246 | 1.80e-29 | 109 |
Find 55 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCACGTCCACGGCTTTC+TGG | 0.157506 | 3.4:+79827766 | None:intergenic |
| TATACCTTCAATCATCTTCT+TGG | 0.230166 | 3.4:+79828062 | None:intergenic |
| TGGATCTCCATGTGTAGTTC+TGG | 0.244886 | 3.4:+79826852 | None:intergenic |
| CAACTAAGCATTACACTCTT+TGG | 0.293381 | 3.4:-79827878 | MS.gene066836:CDS |
| CATTACACTCTTTGGTGCTT+GGG | 0.335731 | 3.4:-79827870 | MS.gene066836:CDS |
| GTCCTTGAAAGTTGCTCTTA+AGG | 0.339410 | 3.4:-79827633 | MS.gene066836:intron |
| AAATTGTAGGATCCTGAAAA+TGG | 0.394779 | 3.4:-79827668 | MS.gene066836:intron |
| GCATTACACTCTTTGGTGCT+TGG | 0.415611 | 3.4:-79827871 | MS.gene066836:CDS |
| CTCTACTTCTTCAAAAGAAA+AGG | 0.419549 | 3.4:-79826793 | MS.gene066836:intron |
| GGATCTCCATGTGTAGTTCT+GGG | 0.432237 | 3.4:+79826853 | None:intergenic |
| TGTCGTCATGTCAAAATCCT+AGG | 0.435595 | 3.4:-79828089 | MS.gene066836:CDS |
| TACCTTAAGAGCAACTTTCA+AGG | 0.440828 | 3.4:+79827631 | None:intergenic |
| CCCTTTGCATCATTGAGATC+AGG | 0.441257 | 3.4:+79827816 | None:intergenic |
| CAAAGAGTGTAATGCTTAGT+TGG | 0.443652 | 3.4:+79827879 | None:intergenic |
| GGGAATGCCCTTACGTCTTG+TGG | 0.446978 | 3.4:-79827849 | MS.gene066836:CDS |
| ATTGGTCAGATGGGTGTTGG+AGG | 0.453286 | 3.4:-79826819 | MS.gene066836:CDS |
| GGGATTGGTCAGATGGGTGT+TGG | 0.463649 | 3.4:-79826822 | MS.gene066836:CDS |
| TGATGGTGGAATGTGAGATT+TGG | 0.471722 | 3.4:+79825655 | None:intergenic |
| AGATGCACGTGCTAAGTTAG+AGG | 0.481970 | 3.4:-79827919 | MS.gene066836:CDS |
| GGCTTTCTGGAAATACTCAT+AGG | 0.488748 | 3.4:+79827779 | None:intergenic |
| TTTGTTTAACTAGGAGGTGA+TGG | 0.492447 | 3.4:+79825638 | None:intergenic |
| GGATGGGCTATTCTTGCAGC+AGG | 0.494623 | 3.4:-79825701 | MS.gene066836:CDS |
| TACATATGACTTGCTTGGAT+GGG | 0.500290 | 3.4:-79825717 | MS.gene066836:CDS |
| TCCTGATCTCAATGATGCAA+AGG | 0.503029 | 3.4:-79827817 | MS.gene066836:CDS |
| ACGAAATTTGTTTAACTAGG+AGG | 0.515471 | 3.4:+79825632 | None:intergenic |
| ATGACGAAATTTGTTTAACT+AGG | 0.517588 | 3.4:+79825629 | None:intergenic |
| TTAGAAATCCACAAGACGTA+AGG | 0.523225 | 3.4:+79827841 | None:intergenic |
| TATCAAAGCTTCTCCCCACT+TGG | 0.532053 | 3.4:+79828116 | None:intergenic |
| CCTGATCTCAATGATGCAAA+GGG | 0.533792 | 3.4:-79827816 | MS.gene066836:CDS |
| TTACATATGACTTGCTTGGA+TGG | 0.537551 | 3.4:-79825718 | MS.gene066836:CDS |
| ATTACACTCTTTGGTGCTTG+GGG | 0.538997 | 3.4:-79827869 | MS.gene066836:CDS |
| TTGCAGCAGGTATAGTAGCA+TGG | 0.555539 | 3.4:-79825688 | MS.gene066836:CDS |
| TTGGTCAGATGGGTGTTGGA+GGG | 0.555646 | 3.4:-79826818 | MS.gene066836:CDS |
| GAGTTTACATATGACTTGCT+TGG | 0.556692 | 3.4:-79825722 | MS.gene066836:CDS |
| GAGTTTACAGAAGAGGACTT+TGG | 0.558515 | 3.4:-79828816 | MS.gene066836:CDS |
| TATACAGAATTTGACCAAGT+GGG | 0.558546 | 3.4:-79828130 | MS.gene066836:intron |
| TGCAGCAGGTATAGTAGCAT+GGG | 0.559855 | 3.4:-79825687 | MS.gene066836:CDS |
| TTTCCAGAAAGCCGTGGACG+TGG | 0.560267 | 3.4:-79827769 | MS.gene066836:intron |
| GATTCCAAGAAGATGATTGA+AGG | 0.565529 | 3.4:-79828066 | MS.gene066836:intron |
| ATCATCTTCTTGGAATCCCT+AGG | 0.572172 | 3.4:+79828072 | None:intergenic |
| GTCGTCATGTCAAAATCCTA+GGG | 0.579581 | 3.4:-79828088 | MS.gene066836:CDS |
| TTACAGAAGAGGACTTTGGT+AGG | 0.589326 | 3.4:-79828812 | MS.gene066836:CDS |
| ATACAGAATTTGACCAAGTG+GGG | 0.589820 | 3.4:-79828129 | MS.gene066836:intron |
| GTTTAACTAGGAGGTGATGG+TGG | 0.591003 | 3.4:+79825641 | None:intergenic |
| TATAGTAGCATGGGTAGCAA+TGG | 0.598058 | 3.4:-79825678 | MS.gene066836:CDS |
| GATCTCCATGTGTAGTTCTG+GGG | 0.602901 | 3.4:+79826854 | None:intergenic |
| GAATATGGAGTTTACAGAAG+AGG | 0.610061 | 3.4:-79828823 | None:intergenic |
| TAGAAATCCACAAGACGTAA+GGG | 0.618493 | 3.4:+79827842 | None:intergenic |
| ATACGTACATCAGCGTCAAG+AGG | 0.633313 | 3.4:+79828735 | None:intergenic |
| CAAATACATTACCACGTCCA+CGG | 0.637087 | 3.4:+79827758 | None:intergenic |
| GAACAATCGCAAAACAGCTG+AGG | 0.642911 | 3.4:-79828775 | MS.gene066836:CDS |
| TGAGTATTTCCAGAAAGCCG+TGG | 0.652801 | 3.4:-79827775 | MS.gene066836:CDS |
| TGCACGTGCTAAGTTAGAGG+AGG | 0.659206 | 3.4:-79827916 | MS.gene066836:CDS |
| TTATACAGAATTTGACCAAG+TGG | 0.672936 | 3.4:-79828131 | MS.gene066836:intron |
| ATAGGCCCCAGAACTACACA+TGG | 0.676465 | 3.4:-79826859 | MS.gene066836:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAACTAAATAAATTATT+AGG | - | chr3.4:79827175-79827194 | MS.gene066836:intron | 10.0% |
| !! | TTAGTTAAAAAATGAATTTA+AGG | + | chr3.4:79826120-79826139 | None:intergenic | 10.0% |
| !!! | TTTTTTAACTAAATTCAATT+CGG | - | chr3.4:79826128-79826147 | MS.gene066836:intron | 10.0% |
| !! | AAGGTAAAATAATTTATGTT+TGG | + | chr3.4:79826101-79826120 | None:intergenic | 15.0% |
| !! | ATAAATCATTCTACTTAAAT+AGG | + | chr3.4:79826231-79826250 | None:intergenic | 15.0% |
| !! | ATGATTTATGCATAAATAAT+AGG | + | chr3.4:79827890-79827909 | None:intergenic | 15.0% |
| !! | CAATATTTATAGAAAGTTCA+AGG | + | chr3.4:79827522-79827541 | None:intergenic | 20.0% |
| !! | CTTATAAAGCATGTTAATAA+TGG | + | chr3.4:79827412-79827431 | None:intergenic | 20.0% |
| !! | GAAAAGTTTAAGTGATATTA+AGG | - | chr3.4:79827280-79827299 | MS.gene066836:intron | 20.0% |
| !! | GTGCTAATATTTAATCTAAT+GGG | - | chr3.4:79828008-79828027 | MS.gene066836:intron | 20.0% |
| !! | TAATATTTAATCTAATGGGA+AGG | - | chr3.4:79828012-79828031 | MS.gene066836:intron | 20.0% |
| !! | TTAAAATGCTAAAACTCAAA+TGG | - | chr3.4:79827802-79827821 | MS.gene066836:CDS | 20.0% |
| !! | TTATTTATGCATAAATCATG+CGG | - | chr3.4:79827891-79827910 | MS.gene066836:CDS | 20.0% |
| !! | TTCTTGAAGTTTATTAATTG+CGG | - | chr3.4:79826765-79826784 | MS.gene066836:intron | 20.0% |
| !!! | ATTAAAAGCATATTTACCAA+CGG | + | chr3.4:79825923-79825942 | None:intergenic | 20.0% |
| !!! | TGAGTTTTAGCATTTTAAAA+TGG | + | chr3.4:79827800-79827819 | None:intergenic | 20.0% |
| ! | ACAGAAGGAGAATAATTATT+AGG | + | chr3.4:79828369-79828388 | None:intergenic | 25.0% |
| ! | AGAAGATGAATTAAACTTGT+TGG | + | chr3.4:79827066-79827085 | None:intergenic | 25.0% |
| ! | ATCAAATTCTAATAAACCTG+AGG | + | chr3.4:79825968-79825987 | None:intergenic | 25.0% |
| ! | ATTCATTATAGAGAGATGAT+TGG | + | chr3.4:79828621-79828640 | None:intergenic | 25.0% |
| ! | CAAAAAAATTTAAGTCTGCT+AGG | + | chr3.4:79828540-79828559 | None:intergenic | 25.0% |
| ! | CAGATACAATTTCAAAACAA+TGG | + | chr3.4:79826877-79826896 | None:intergenic | 25.0% |
| ! | CATGAAATCTAAAAAACAGA+AGG | + | chr3.4:79828384-79828403 | None:intergenic | 25.0% |
| ! | CGTGCTAATATTTAATCTAA+TGG | - | chr3.4:79828007-79828026 | MS.gene066836:intron | 25.0% |
| ! | GTTTGTTCTATAAATCACAA+CGG | - | chr3.4:79827200-79827219 | MS.gene066836:intron | 25.0% |
| ! | TTCATCTTCTATTTACTACA+TGG | - | chr3.4:79827076-79827095 | MS.gene066836:intron | 25.0% |
| !! | ACATGCTTTATAAGTTTTTC+TGG | - | chr3.4:79827418-79827437 | MS.gene066836:intron | 25.0% |
| !! | TTCAAAGTACTATCACAATT+TGG | - | chr3.4:79828236-79828255 | MS.gene066836:intron | 25.0% |
| !!! | AAAGTTATTTTCTCTTGTGA+AGG | - | chr3.4:79826453-79826472 | MS.gene066836:intron | 25.0% |
| !!! | AGGTTTATTCTAAAACTACA+AGG | + | chr3.4:79825948-79825967 | None:intergenic | 25.0% |
| !!! | TGATTATTGTGTGTTTTGAT+GGG | - | chr3.4:79826497-79826516 | MS.gene066836:intron | 25.0% |
| !!! | TGTTTTTTAGATTTCATGTG+CGG | - | chr3.4:79828386-79828405 | MS.gene066836:intron | 25.0% |
| !!! | TTGATTATTGTGTGTTTTGA+TGG | - | chr3.4:79826496-79826515 | MS.gene066836:intron | 25.0% |
| !!! | TTTATAAGTTTTTCTGGTCA+AGG | - | chr3.4:79827424-79827443 | MS.gene066836:intron | 25.0% |
| !!! | TTTTCTTTTGAAGAAGTAGA+GGG | + | chr3.4:79827670-79827689 | None:intergenic | 25.0% |
| AAAAGAAATCCTCACGAATT+CGG | + | chr3.4:79825817-79825836 | None:intergenic | 30.0% | |
| AAATTGTAGGATCCTGAAAA+TGG | - | chr3.4:79826794-79826813 | MS.gene066836:CDS | 30.0% | |
| AATTAGACAACATGTTCTAG+AGG | - | chr3.4:79828112-79828131 | MS.gene066836:CDS | 30.0% | |
| ACTAAATTCAATTCGGTAGT+TGG | - | chr3.4:79826135-79826154 | MS.gene066836:intron | 30.0% | |
| ACTTCTTCAAAAGAAAAGGT+TGG | - | chr3.4:79827673-79827692 | MS.gene066836:intron | 30.0% | |
| AGAAGAGTAGTATAGTTCAA+AGG | + | chr3.4:79828471-79828490 | None:intergenic | 30.0% | |
| AGCCATAAAAAAAGTCGTTT+AGG | - | chr3.4:79826201-79826220 | MS.gene066836:intron | 30.0% | |
| ATGATACTGCAGTTAGAATT+GGG | - | chr3.4:79828277-79828296 | MS.gene066836:intron | 30.0% | |
| CTCTACTTCTTCAAAAGAAA+AGG | - | chr3.4:79827669-79827688 | MS.gene066836:intron | 30.0% | |
| GTCTTTGTCTCATTACAATA+CGG | - | chr3.4:79825889-79825908 | MS.gene066836:intron | 30.0% | |
| TATACAGAATTTGACCAAGT+GGG | - | chr3.4:79826332-79826351 | MS.gene066836:intron | 30.0% | |
| TATACCTTCAATCATCTTCT+TGG | + | chr3.4:79826403-79826422 | None:intergenic | 30.0% | |
| TATCTGTTAACAGCATTGTT+TGG | - | chr3.4:79828683-79828702 | MS.gene066836:intron | 30.0% | |
| TATGATACTGCAGTTAGAAT+TGG | - | chr3.4:79828276-79828295 | MS.gene066836:intron | 30.0% | |
| TCAAACAATTTAAGTCTGCT+AGG | + | chr3.4:79828569-79828588 | None:intergenic | 30.0% | |
| TCACAAATACTAACTGTAAC+TGG | - | chr3.4:79827739-79827758 | MS.gene066836:intron | 30.0% | |
| TTATACAGAATTTGACCAAG+TGG | - | chr3.4:79826331-79826350 | MS.gene066836:intron | 30.0% | |
| TTGGACCTGCATATAATTTA+CGG | + | chr3.4:79828210-79828229 | None:intergenic | 30.0% | |
| TTTACTACATGGTTTATCTG+AGG | - | chr3.4:79827087-79827106 | MS.gene066836:intron | 30.0% | |
| ! | ATTAGACAACATGTTCTAGA+GGG | - | chr3.4:79828113-79828132 | MS.gene066836:CDS | 30.0% |
| ! | GGAATTGATTTAGTTCACAA+AGG | - | chr3.4:79827362-79827381 | MS.gene066836:intron | 30.0% |
| ! | TATGCGTTTGTTCAGTTTTA+TGG | + | chr3.4:79826279-79826298 | None:intergenic | 30.0% |
| ! | TTGATTTAGTTCACAAAGGT+TGG | - | chr3.4:79827366-79827385 | MS.gene066836:intron | 30.0% |
| !! | CTTTTCTTTTGAAGAAGTAG+AGG | + | chr3.4:79827671-79827690 | None:intergenic | 30.0% |
| !! | TGGTTTATCTGAGGTTTTAA+TGG | - | chr3.4:79827096-79827115 | MS.gene066836:intron | 30.0% |
| !!! | AATTGGAAGTGTTAACCTTT+TGG | - | chr3.4:79826986-79827005 | MS.gene066836:intron | 30.0% |
| !!! | GACCTAAACGACTTTTTTTA+TGG | + | chr3.4:79826206-79826225 | None:intergenic | 30.0% |
| !!! | GTAGTTTTAGAATAAACCTC+AGG | - | chr3.4:79825949-79825968 | MS.gene066836:intron | 30.0% |
| !!! | TTGGCACTTCTTTTTTATCT+TGG | - | chr3.4:79827939-79827958 | MS.gene066836:intron | 30.0% |
| AAATGCTATTCCAAATGGGA+AGG | + | chr3.4:79827921-79827940 | None:intergenic | 35.0% | |
| ACATGGAGATCCACAAAAAT+GGG | - | chr3.4:79827620-79827639 | MS.gene066836:intron | 35.0% | |
| ATACAGAATTTGACCAAGTG+GGG | - | chr3.4:79826333-79826352 | MS.gene066836:intron | 35.0% | |
| ATAGTACTTTGAACGACACT+TGG | + | chr3.4:79828229-79828248 | None:intergenic | 35.0% | |
| CAACTAAGCATTACACTCTT+TGG | - | chr3.4:79826584-79826603 | MS.gene066836:intron | 35.0% | |
| GATTCCAAGAAGATGATTGA+AGG | - | chr3.4:79826396-79826415 | MS.gene066836:intron | 35.0% | |
| GTTTGTAAACCATGTCTCAT+AGG | - | chr3.4:79827585-79827604 | MS.gene066836:intron | 35.0% | |
| TAAAACTACCTTGTCTACTC+TGG | - | chr3.4:79826952-79826971 | MS.gene066836:intron | 35.0% | |
| TAAATAAAACCCGCAGTATC+TGG | + | chr3.4:79827235-79827254 | None:intergenic | 35.0% | |
| TACCTTAAGAGCAACTTTCA+AGG | + | chr3.4:79826834-79826853 | None:intergenic | 35.0% | |
| TAGAAATCCACAAGACGTAA+GGG | + | chr3.4:79826623-79826642 | None:intergenic | 35.0% | |
| TAGAGGGATAAAATGATGCT+AGG | - | chr3.4:79828129-79828148 | MS.gene066836:intron | 35.0% | |
| TCTTATCGATCAACGTTGTA+TGG | - | chr3.4:79828319-79828338 | MS.gene066836:intron | 35.0% | |
| TCTTGTTCTGTGGATGTAAA+TGG | - | chr3.4:79827828-79827847 | MS.gene066836:CDS | 35.0% | |
| TGCCAAATGCTATTCCAAAT+GGG | + | chr3.4:79827925-79827944 | None:intergenic | 35.0% | |
| TGGGTTGTATTTGCAAACAA+GGG | - | chr3.4:79828296-79828315 | MS.gene066836:intron | 35.0% | |
| TGTAAATGGTTGTTGCCATT+AGG | - | chr3.4:79827842-79827861 | MS.gene066836:CDS | 35.0% | |
| TTAGAAATCCACAAGACGTA+AGG | + | chr3.4:79826624-79826643 | None:intergenic | 35.0% | |
| ! | AGCATTGTTTGGTTCATTTC+AGG | - | chr3.4:79828694-79828713 | MS.gene066836:intron | 35.0% |
| ! | CAAAGAGTGTAATGCTTAGT+TGG | + | chr3.4:79826586-79826605 | None:intergenic | 35.0% |
| ! | CATGTCATGTTTTCGGATAT+TGG | - | chr3.4:79828498-79828517 | MS.gene066836:intron | 35.0% |
| ! | TTCCCATTTGGAATAGCATT+TGG | - | chr3.4:79827920-79827939 | MS.gene066836:CDS | 35.0% |
| ! | TTGGGTTGTATTTGCAAACA+AGG | - | chr3.4:79828295-79828314 | MS.gene066836:intron | 35.0% |
| !! | AAAAATGGGATTGGTCAGAT+GGG | - | chr3.4:79827634-79827653 | MS.gene066836:CDS | 35.0% |
| !! | ATGTTATTTCCGAATTCGTG+AGG | - | chr3.4:79825805-79825824 | MS.gene066836:intron | 35.0% |
| !! | ATTGCGGATTCTGAAATTGT+AGG | - | chr3.4:79826781-79826800 | MS.gene066836:intron | 35.0% |
| !! | GAGTTTACATATGACTTGCT+TGG | - | chr3.4:79828740-79828759 | MS.gene066836:intron | 35.0% |
| !! | TACATATGACTTGCTTGGAT+GGG | - | chr3.4:79828745-79828764 | MS.gene066836:CDS | 35.0% |
| !! | TCACAAAGGTTGGTGAAAAT+TGG | - | chr3.4:79827376-79827395 | MS.gene066836:intron | 35.0% |
| !! | TTACATATGACTTGCTTGGA+TGG | - | chr3.4:79828744-79828763 | MS.gene066836:CDS | 35.0% |
| !!! | CTCTGGTTTTTAGCTGAAAT+TGG | - | chr3.4:79826969-79826988 | MS.gene066836:intron | 35.0% |
| !!! | GATACTGCGGGTTTTATTTA+TGG | - | chr3.4:79827235-79827254 | MS.gene066836:intron | 35.0% |
| ATCATCTTCTTGGAATCCCT+AGG | + | chr3.4:79826393-79826412 | None:intergenic | 40.0% | |
| ATTCCAGCAATGCATGATGA+TGG | + | chr3.4:79827347-79827366 | None:intergenic | 40.0% | |
| CAAATACATTACCACGTCCA+CGG | + | chr3.4:79826707-79826726 | None:intergenic | 40.0% | |
| CAAATGGAGTTCTTGTTCTG+TGG | - | chr3.4:79827818-79827837 | MS.gene066836:CDS | 40.0% | |
| CAATACGGAAATTTCACCGT+TGG | - | chr3.4:79825904-79825923 | MS.gene066836:intron | 40.0% | |
| CACATGGAGATCCACAAAAA+TGG | - | chr3.4:79827619-79827638 | MS.gene066836:intron | 40.0% | |
| CCTGATCTCAATGATGCAAA+GGG | - | chr3.4:79826646-79826665 | MS.gene066836:intron | 40.0% | |
| CTGTGACTCTATCAACCAAA+AGG | + | chr3.4:79827004-79827023 | None:intergenic | 40.0% | |
| GAGATCCACAAAAATGGGAT+TGG | - | chr3.4:79827625-79827644 | MS.gene066836:intron | 40.0% | |
| GAGTTTACAGAAGAGGACTT+TGG | - | chr3.4:79825646-79825665 | MS.gene066836:CDS | 40.0% | |
| GCCTCAAATTTGGATGTACA+AGG | - | chr3.4:79827864-79827883 | MS.gene066836:CDS | 40.0% | |
| GCCTTGTACATCCAAATTTG+AGG | + | chr3.4:79827868-79827887 | None:intergenic | 40.0% | |
| GCTAAAAACCAGAGTAGACA+AGG | + | chr3.4:79826963-79826982 | None:intergenic | 40.0% | |
| GGTCATGTCAGTCAAGTATA+AGG | - | chr3.4:79827760-79827779 | MS.gene066836:intron | 40.0% | |
| GTCAGTCAAGTATAAGGACA+TGG | - | chr3.4:79827766-79827785 | MS.gene066836:intron | 40.0% | |
| GTCCTTGAAAGTTGCTCTTA+AGG | - | chr3.4:79826829-79826848 | MS.gene066836:CDS | 40.0% | |
| GTCGTCATGTCAAAATCCTA+GGG | - | chr3.4:79826374-79826393 | MS.gene066836:intron | 40.0% | |
| GTGCCAAATGCTATTCCAAA+TGG | + | chr3.4:79827926-79827945 | None:intergenic | 40.0% | |
| GTGTGCCGTAAATTATATGC+AGG | - | chr3.4:79828202-79828221 | MS.gene066836:intron | 40.0% | |
| TATAGTAGCATGGGTAGCAA+TGG | - | chr3.4:79828784-79828803 | MS.gene066836:CDS | 40.0% | |
| TATCCGAAAACATGACATGC+TGG | + | chr3.4:79828497-79828516 | None:intergenic | 40.0% | |
| TCCTGATCTCAATGATGCAA+AGG | - | chr3.4:79826645-79826664 | MS.gene066836:intron | 40.0% | |
| TGGCAGTAGAGAACTACTTT+AGG | + | chr3.4:79827046-79827065 | None:intergenic | 40.0% | |
| TGTCGTCATGTCAAAATCCT+AGG | - | chr3.4:79826373-79826392 | MS.gene066836:intron | 40.0% | |
| TTACAGAAGAGGACTTTGGT+AGG | - | chr3.4:79825650-79825669 | MS.gene066836:CDS | 40.0% | |
| TTGCCATTAGGCCTCAAATT+TGG | - | chr3.4:79827854-79827873 | MS.gene066836:CDS | 40.0% | |
| ! | ACTCCAGCATGTCATGTTTT+CGG | - | chr3.4:79828491-79828510 | MS.gene066836:intron | 40.0% |
| ! | CATCCAAATTTGAGGCCTAA+TGG | + | chr3.4:79827860-79827879 | None:intergenic | 40.0% |
| ! | GGCTTTCTGGAAATACTCAT+AGG | + | chr3.4:79826686-79826705 | None:intergenic | 40.0% |
| ! | TGTCTGTAGAGACCATTTTC+AGG | + | chr3.4:79826809-79826828 | None:intergenic | 40.0% |
| !! | AGCTGTTTTGCGATTGTTCT+CGG | + | chr3.4:79825686-79825705 | None:intergenic | 40.0% |
| !! | ATTACACTCTTTGGTGCTTG+GGG | - | chr3.4:79826593-79826612 | MS.gene066836:intron | 40.0% |
| !! | CAAAAATGGGATTGGTCAGA+TGG | - | chr3.4:79827633-79827652 | MS.gene066836:intron | 40.0% |
| !! | CATTACACTCTTTGGTGCTT+GGG | - | chr3.4:79826592-79826611 | MS.gene066836:intron | 40.0% |
| !! | TCTGACCAATCCCATTTTTG+TGG | + | chr3.4:79827633-79827652 | None:intergenic | 40.0% |
| !! | TGATGGTGGAATGTGAGATT+TGG | + | chr3.4:79828810-79828829 | None:intergenic | 40.0% |
| !! | TGCAAAGGGTCATTTTGACA+AGG | - | chr3.4:79826660-79826679 | MS.gene066836:intron | 40.0% |
| !!! | ACGACTTTTTTTATGGCTCG+TGG | + | chr3.4:79826199-79826218 | None:intergenic | 40.0% |
| AAACCCGCAGTATCTGGTAT+AGG | + | chr3.4:79827229-79827248 | None:intergenic | 45.0% | |
| AGATGCACGTGCTAAGTTAG+AGG | - | chr3.4:79826543-79826562 | MS.gene066836:intron | 45.0% | |
| ATACGTACATCAGCGTCAAG+AGG | + | chr3.4:79825730-79825749 | None:intergenic | 45.0% | |
| CAGTATCATACGCAGCTAGA+TGG | + | chr3.4:79828266-79828285 | None:intergenic | 45.0% | |
| CCCTTTGCATCATTGAGATC+AGG | + | chr3.4:79826649-79826668 | None:intergenic | 45.0% | |
| GAACAATCGCAAAACAGCTG+AGG | - | chr3.4:79825687-79825706 | MS.gene066836:CDS | 45.0% | |
| GGATCTCCATGTGTAGTTCT+GGG | + | chr3.4:79827612-79827631 | None:intergenic | 45.0% | |
| GGCTAATGTGCTACACTGTA+GGG | - | chr3.4:79827256-79827275 | MS.gene066836:intron | 45.0% | |
| TATCAAAGCTTCTCCCCACT+TGG | + | chr3.4:79826349-79826368 | None:intergenic | 45.0% | |
| TCTAACTTAGCACGTGCATC+TGG | + | chr3.4:79826544-79826563 | None:intergenic | 45.0% | |
| TGAGTATTTCCAGAAAGCCG+TGG | - | chr3.4:79826687-79826706 | MS.gene066836:intron | 45.0% | |
| TGCAGCAGGTATAGTAGCAT+GGG | - | chr3.4:79828775-79828794 | MS.gene066836:CDS | 45.0% | |
| TGGATCTCCATGTGTAGTTC+TGG | + | chr3.4:79827613-79827632 | None:intergenic | 45.0% | |
| TGGCTAATGTGCTACACTGT+AGG | - | chr3.4:79827255-79827274 | MS.gene066836:intron | 45.0% | |
| TTGCAGCAGGTATAGTAGCA+TGG | - | chr3.4:79828774-79828793 | MS.gene066836:CDS | 45.0% | |
| TTGCCATCATCATGCATTGC+TGG | - | chr3.4:79827341-79827360 | MS.gene066836:intron | 45.0% | |
| ! | CACGTGCATCTGGAATTAGT+TGG | + | chr3.4:79826534-79826553 | None:intergenic | 45.0% |
| ! | GATCTCCATGTGTAGTTCTG+GGG | + | chr3.4:79827611-79827630 | None:intergenic | 45.0% |
| ! | TTCTAAGAGACACGCTCTTC+AGG | - | chr3.4:79827982-79828001 | MS.gene066836:intron | 45.0% |
| !! | GCATTACACTCTTTGGTGCT+TGG | - | chr3.4:79826591-79826610 | MS.gene066836:intron | 45.0% |
| !! | TAAAAGAAATATAAATAATT+AGG | + | chr3.4:79825775-79825794 | None:intergenic | 5.0% |
| ATAGGCCCCAGAACTACACA+TGG | - | chr3.4:79827603-79827622 | MS.gene066836:intron | 50.0% | |
| CCACCTATACCAGATACTGC+GGG | - | chr3.4:79827223-79827242 | MS.gene066836:intron | 50.0% | |
| GCACACAAACAGACACAACG+CGG | + | chr3.4:79828188-79828207 | None:intergenic | 50.0% | |
| GCCACCTATACCAGATACTG+CGG | - | chr3.4:79827222-79827241 | MS.gene066836:intron | 50.0% | |
| TGCACGTGCTAAGTTAGAGG+AGG | - | chr3.4:79826546-79826565 | MS.gene066836:intron | 50.0% | |
| TGGATCCATGCTTCACTAGC+TGG | - | chr3.4:79826155-79826174 | MS.gene066836:intron | 50.0% | |
| ! | ATGCGGATTGCCTTCCCATT+TGG | - | chr3.4:79827908-79827927 | MS.gene066836:CDS | 50.0% |
| !! | ATTGGTCAGATGGGTGTTGG+AGG | - | chr3.4:79827643-79827662 | MS.gene066836:CDS | 50.0% |
| !! | TTGGTCAGATGGGTGTTGGA+GGG | - | chr3.4:79827644-79827663 | MS.gene066836:CDS | 50.0% |
| CCCGCAGTATCTGGTATAGG+TGG | + | chr3.4:79827226-79827245 | None:intergenic | 55.0% | |
| GGGAATGCCCTTACGTCTTG+TGG | - | chr3.4:79826613-79826632 | MS.gene066836:intron | 55.0% | |
| TTACCACGTCCACGGCTTTC+TGG | + | chr3.4:79826699-79826718 | None:intergenic | 55.0% | |
| TTTCCAGAAAGCCGTGGACG+TGG | - | chr3.4:79826693-79826712 | MS.gene066836:intron | 55.0% | |
| !! | GGATGGGCTATTCTTGCAGC+AGG | - | chr3.4:79828761-79828780 | MS.gene066836:CDS | 55.0% |
| !! | GGGATTGGTCAGATGGGTGT+TGG | - | chr3.4:79827640-79827659 | MS.gene066836:CDS | 55.0% |
| !! | GTTCTGGGGCCTATGAGACA+TGG | + | chr3.4:79827597-79827616 | None:intergenic | 55.0% |
| CGACGCCAGCTAGTGAAGCA+TGG | + | chr3.4:79826163-79826182 | None:intergenic | 60.0% | |
| TGCTTCACTAGCTGGCGTCG+CGG | - | chr3.4:79826163-79826182 | MS.gene066836:intron | 60.0% | |
| GCTTCACTAGCTGGCGTCGC+GGG | - | chr3.4:79826164-79826183 | MS.gene066836:intron | 65.0% | |
| CACTAGCTGGCGTCGCGGGA+TGG | - | chr3.4:79826168-79826187 | MS.gene066836:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79825643 | 79828841 | 79825643 | ID=MS.gene066836 |
| chr3.4 | mRNA | 79825643 | 79828841 | 79825643 | ID=MS.gene066836.t1;Parent=MS.gene066836 |
| chr3.4 | exon | 79828743 | 79828841 | 79828743 | ID=MS.gene066836.t1.exon1;Parent=MS.gene066836.t1 |
| chr3.4 | CDS | 79828743 | 79828841 | 79828743 | ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1 |
| chr3.4 | exon | 79828067 | 79828145 | 79828067 | ID=MS.gene066836.t1.exon2;Parent=MS.gene066836.t1 |
| chr3.4 | CDS | 79828067 | 79828145 | 79828067 | ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1 |
| chr3.4 | exon | 79827770 | 79827939 | 79827770 | ID=MS.gene066836.t1.exon3;Parent=MS.gene066836.t1 |
| chr3.4 | CDS | 79827770 | 79827939 | 79827770 | ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1 |
| chr3.4 | exon | 79827634 | 79827681 | 79827634 | ID=MS.gene066836.t1.exon4;Parent=MS.gene066836.t1 |
| chr3.4 | CDS | 79827634 | 79827681 | 79827634 | ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1 |
| chr3.4 | exon | 79826794 | 79826877 | 79826794 | ID=MS.gene066836.t1.exon5;Parent=MS.gene066836.t1 |
| chr3.4 | CDS | 79826794 | 79826877 | 79826794 | ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1 |
| chr3.4 | exon | 79825643 | 79825768 | 79825643 | ID=MS.gene066836.t1.exon6;Parent=MS.gene066836.t1 |
| chr3.4 | CDS | 79825643 | 79825768 | 79825643 | ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1 |
| Gene Sequence |
| Protein sequence |
