AlfalfaGEDB | MS.gene066836

M. sativa cultivar XinJiangDaYe / MS.gene066836

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF06552.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066836.t1	XP_003601790.1	89.2	203	20	1	1	201	1	203	1.80E-98	368.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066836.t1	P92792	58.9	192	78	1	5	195	4	195	1.2e-58	227.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066836.t1	G7JBZ8	89.2	203	20	1	1	201	1	203	1.3e-98	368.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049166	MS.gene066836	0.800874	1.17E-48	-1.69E-46
MS.gene050277	MS.gene066836	0.806674	7.33E-50	-1.69E-46
MS.gene051003	MS.gene066836	0.829215	5.83E-55	-1.69E-46
MS.gene05134	MS.gene066836	0.813787	2.14E-51	-1.69E-46
MS.gene05188	MS.gene066836	0.843574	1.29E-58	-1.69E-46
MS.gene051975	MS.gene066836	0.852708	3.87E-61	-1.69E-46
MS.gene052434	MS.gene066836	0.841522	4.52E-58	-1.69E-46
MS.gene053058	MS.gene066836	0.830773	2.43E-55	-1.69E-46
MS.gene053226	MS.gene066836	0.80403	2.63E-49	-1.69E-46
MS.gene053381	MS.gene066836	0.803763	2.99E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066836.t1	MTR_3g085410	95.074	203	8	1	1	201	1	203	2.28e-144	400
MS.gene066836.t1	MTR_6g024140	58.883	197	79	1	1	195	1	197	2.15e-81	241
MS.gene066836.t1	MTR_3g085420	46.617	133	43	4	1	130	6	113	1.32e-27	105
MS.gene066836.t1	MTR_6g044560	41.259	143	83	1	21	162	21	163	3.42e-25	102
MS.gene066836.t1	MTR_6g012540	38.760	129	70	3	7	132	6	128	6.09e-21	87.4
MS.gene066836.t1	MTR_6g016250	36.486	148	79	3	21	165	8	143	4.59e-18	78.2
MS.gene066836.t1	MTR_7g099160	35.802	162	98	4	1	159	3	161	7.07e-17	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066836.t1	AT1G27390	51.415	212	86	2	1	199	1	208	3.89e-67	205
MS.gene066836.t1	AT3G27080	49.500	200	97	2	4	200	3	201	6.61e-65	199
MS.gene066836.t1	AT5G40930	49.735	189	83	3	10	198	9	185	3.22e-56	176
MS.gene066836.t1	AT3G27070	49.189	185	91	2	10	192	3	186	7.55e-52	165
MS.gene066836.t1	AT1G27390	51.923	156	58	2	57	199	1	152	4.30e-47	152
MS.gene066836.t1	AT5G40930	50.000	148	63	2	10	157	9	145	9.86e-41	136
MS.gene066836.t1	AT3G27070	45.522	134	70	2	61	192	114	246	1.80e-29	109

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Find 55 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTAGGATCCTGAAAA+TGG	0.394779	3.4:-79827668	MS.gene066836:intron
ACGAAATTTGTTTAACTAGG+AGG	0.515471	3.4:+79825632	None:intergenic
AGATGCACGTGCTAAGTTAG+AGG	0.481970	3.4:-79827919	MS.gene066836:CDS
ATACAGAATTTGACCAAGTG+GGG	0.589820	3.4:-79828129	MS.gene066836:intron
ATACGTACATCAGCGTCAAG+AGG	0.633313	3.4:+79828735	None:intergenic
ATAGGCCCCAGAACTACACA+TGG	0.676465	3.4:-79826859	MS.gene066836:intron
ATCATCTTCTTGGAATCCCT+AGG	0.572172	3.4:+79828072	None:intergenic
ATGACGAAATTTGTTTAACT+AGG	0.517588	3.4:+79825629	None:intergenic
ATTACACTCTTTGGTGCTTG+GGG	0.538997	3.4:-79827869	MS.gene066836:CDS
ATTGGTCAGATGGGTGTTGG+AGG	0.453286	3.4:-79826819	MS.gene066836:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAATCCTCACGAATT+CGG	+	chr3.4:79825817-79825836	None:intergenic	30.0%
AAATTGTAGGATCCTGAAAA+TGG	-	chr3.4:79826794-79826813	MS.gene066836:CDS	30.0%
AATTAGACAACATGTTCTAG+AGG	-	chr3.4:79828112-79828131	MS.gene066836:CDS	30.0%
ACTAAATTCAATTCGGTAGT+TGG	-	chr3.4:79826135-79826154	MS.gene066836:intron	30.0%
ACTTCTTCAAAAGAAAAGGT+TGG	-	chr3.4:79827673-79827692	MS.gene066836:intron	30.0%
AGAAGAGTAGTATAGTTCAA+AGG	+	chr3.4:79828471-79828490	None:intergenic	30.0%
AGCCATAAAAAAAGTCGTTT+AGG	-	chr3.4:79826201-79826220	MS.gene066836:intron	30.0%
ATGATACTGCAGTTAGAATT+GGG	-	chr3.4:79828277-79828296	MS.gene066836:intron	30.0%
CTCTACTTCTTCAAAAGAAA+AGG	-	chr3.4:79827669-79827688	MS.gene066836:intron	30.0%
GTCTTTGTCTCATTACAATA+CGG	-	chr3.4:79825889-79825908	MS.gene066836:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	79825643	79828841	79825643	ID=MS.gene066836
chr3.4	mRNA	79825643	79828841	79825643	ID=MS.gene066836.t1;Parent=MS.gene066836
chr3.4	exon	79828743	79828841	79828743	ID=MS.gene066836.t1.exon1;Parent=MS.gene066836.t1
chr3.4	CDS	79828743	79828841	79828743	ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1
chr3.4	exon	79828067	79828145	79828067	ID=MS.gene066836.t1.exon2;Parent=MS.gene066836.t1
chr3.4	CDS	79828067	79828145	79828067	ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1
chr3.4	exon	79827770	79827939	79827770	ID=MS.gene066836.t1.exon3;Parent=MS.gene066836.t1
chr3.4	CDS	79827770	79827939	79827770	ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1
chr3.4	exon	79827634	79827681	79827634	ID=MS.gene066836.t1.exon4;Parent=MS.gene066836.t1
chr3.4	CDS	79827634	79827681	79827634	ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1
chr3.4	exon	79826794	79826877	79826794	ID=MS.gene066836.t1.exon5;Parent=MS.gene066836.t1
chr3.4	CDS	79826794	79826877	79826794	ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1
chr3.4	exon	79825643	79825768	79825643	ID=MS.gene066836.t1.exon6;Parent=MS.gene066836.t1
chr3.4	CDS	79825643	79825768	79825643	ID=cds.MS.gene066836.t1;Parent=MS.gene066836.t1

Gene Sequence

>MS.gene066836

ATGGAGTTTACAGAAGAGGACTTTGGTAGGTTACTGTATGCCGAGAACAATCGCAAAACAGCTGAGGAAAACTACGTTCAAGATCCTCTTGACGCTGATGTACGTATCAATATCATTCTTCATTCTTGACCTAATTATTTATATTTCTTTTAGTTAATTTACATGTTATTTCCGAATTCGTGAGGATTTCTTTTACATGTTCTGTATTGTAGAAACTGTTTCTATATGTTTGTTTTTTCGTTCTTAGTCTTTGTCTCATTACAATACGGAAATTTCACCGTTGGTAAATATGCTTTTAATAACCTTGTAGTTTTAGAATAAACCTCAGGTTTATTAGAATTTGATTTTTTTCTTTCTATATAATCGATTCTAACTTAAATAGAATTTGTAATATATGTGTCATGTGTAATGATTTTTACACTTTTATTGTTCAACTCACTTTAAAGTAAATGTATCCAAACATAAATTATTTTACCTTAAATTCATTTTTTAACTAAATTCAATTCGGTAGTTGGATCCATGCTTCACTAGCTGGCGTCGCGGGATGGTAAGACCACGAGCCATAAAAAAAGTCGTTTAGGTCTACCTATTTAAGTAGAATGATTTATGCTCAATGAAAATCAATTTTCGTCGCCATAAAACTGAACAAACGCATAATGTGTCTGATCATATGTATATGTATTTATATTTATACAGAATTTGACCAAGTGGGGAGAAGCTTTGATAGAGTTGTCGTCATGTCAAAATCCTAGGGATTCCAAGAAGATGATTGAAGGTATACATATTATGAGTAAAATCTAGCTGAATTTTAAAGTTATTTTCTCTTGTGAAGGAACAAGCTTAATTACTGTGATTGATTATTGTGTGTTTTGATGGGAACTGAATTTACCAACTAATTCCAGATGCACGTGCTAAGTTAGAGGAGGCTTTAGAAATCGATCCAACTAAGCATTACACTCTTTGGTGCTTGGGGAATGCCCTTACGTCTTGTGGATTTCTAACTCCTGATCTCAATGATGCAAAGGGTCATTTTGACAAGGCCTATGAGTATTTCCAGAAAGCCGTGGACGTGGTAATGTATTTGCTCTTATCTTAACATATATTGACATGCTGCACTTGTACTTCTTGAAGTTTATTAATTGCGGATTCTGAAATTGTAGGATCCTGAAAATGGTCTCTACAGACAGTCCTTGAAAGTTGCTCTTAAGGTAATGTAATAATAGATATATGACCATTGTTTTGAAATTGTATCTGCACGTGATTTTATTCTCATGTTCAAAAAATTGCTAAAAAAGATTCTCAAATCAATTAAAACTACCTTGTCTACTCTGGTTTTTAGCTGAAATTGGAAGTGTTAACCTTTTGGTTGATAGAGTCACAGCTTGTGATGTATATCTTAGCCTAAAGTAGTTCTCTACTGCCAACAAGTTTAATTCATCTTCTATTTACTACATGGTTTATCTGAGGTTTTAATGGTTTTCTTTTTGTTTACTGATTCAGATTCTGTTCTTTTAATATTGAGCAAGACTTATGTAAAACTAAATAAATTATTAGGATGTTTGTTCTATAAATCACAACGGCCACCTATACCAGATACTGCGGGTTTTATTTATGGCTAATGTGCTACACTGTAGGGAGAAAAGTTTAAGTGATATTAAGGCAATCAGATGAGTATATTTTTTAGCATACTATTTATCATTGCCATCATCATGCATTGCTGGAATTGATTTAGTTCACAAAGGTTGGTGAAAATTGGTATTGTGATGCCATTATTAACATGCTTTATAAGTTTTTCTGGTCAAGGAACTTTACAATTTTTTTCATAAACAAGTTGATATTCTTGTCATATGCATTTTAGACAAGTTCTCTTTTGATTCCTTGAACTTTCTATAAATATTGTATGTAACTTGTTTGCTATTGTATCTTTTCTACTTTGATGAATGTTTGTAAACCATGTCTCATAGGCCCCAGAACTACACATGGAGATCCACAAAAATGGGATTGGTCAGATGGGTGTTGGAGGGCCCTCTACTTCTTCAAAAGAAAAGGTTGGAGAAATAATTGCATTTAATTTAATATTTGCTAAGTTCTCGTTCTCACAAATACTAACTGTAACTGGTCATGTCAGTCAAGTATAAGGACATGGCTTTTTGACCATTTTAAAATGCTAAAACTCAAATGGAGTTCTTGTTCTGTGGATGTAAATGGTTGTTGCCATTAGGCCTCAAATTTGGATGTACAAGGCCTATTATTTATGCATAAATCATGCGGATTGCCTTCCCATTTGGAATAGCATTTGGCACTTCTTTTTTATCTTGGAGCTAGATGCTTGTTCATGATTCTAAGAGACACGCTCTTCAGGATCGTGCTAATATTTAATCTAATGGGAAGGCACGCTCTCTCTGTGAAGCTTGTTTGCATTGTGTTACTGTTAATTGCAGATATAATTTAATTTCTTCAAAACTAGTAAATTAGACAACATGTTCTAGAGGGATAAAATGATGCTAGGTCATTGTATTGTCAATTTATCATGTTATTTGTGCCGCGTTGTGTCTGTTTGTGTGCCGTAAATTATATGCAGGTCCAAGTGTCGTTCAAAGTACTATCACAATTTGGTCTGCCATCTAGCTGCGTATGATACTGCAGTTAGAATTGGGTTGTATTTGCAAACAAGGGTCTTATCGATCAACGTTGTATGGATATATGCAGTATTATGTTTTTTGCCTAATAATTATTCTCCTTCTGTTTTTTAGATTTCATGTGCGGAGTCTGTCTTGTTTTAACATTGAAGATAACTATATTTTATAGATAAACAAACTTTTTATCCTTTGAACTATACTACTCTTCTACTCCAGCATGTCATGTTTTCGGATATTGGAAAATAGCAAAAGTAACCTAGCAGACTTAAATTTTTTTGAAGAAACCTAGCAGACTTAAATTGTTTGAAGAATTCATGATTATTTTAGATTTTGTGTCCAATCATCTCTCTATAATGAATAGAATATTATTCTTGATAACTTGTTTGTATATGAATGACGAATATCTGTTAACAGCATTGTTTGGTTCATTTCAGGAATCTAAAAAGCAGAAGAGCAGTGAGTTTACATATGACTTGCTTGGATGGGCTATTCTTGCAGCAGGTATAGTAGCATGGGTAGCAATGGCCAAATCTCACATTCCACCATCACCTCCTAGTTAA

Protein sequence

>MS.gene066836.t1

MEFTEEDFGRLLYAENNRKTAEENYVQDPLDADNLTKWGEALIELSSCQNPRDSKKMIEDARAKLEEALEIDPTKHYTLWCLGNALTSCGFLTPDLNDAKGHFDKAYEYFQKAVDVDPENGLYRQSLKVALKAPELHMEIHKNGIGQMGVGGPSTSSKEKESKKQKSSEFTYDLLGWAILAAGIVAWVAMAKSHIPPSPPS