Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067608.t1 | AFK33794.1 | 96.2 | 527 | 17 | 2 | 1 | 525 | 1 | 526 | 5.30E-283 | 983 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067608.t1 | F4I8I0 | 49.4 | 492 | 220 | 10 | 1 | 476 | 1 | 479 | 1.8e-109 | 397.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067608.t1 | I3S0K2 | 96.2 | 527 | 17 | 2 | 1 | 525 | 1 | 526 | 3.8e-283 | 983.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene067608 | 0.817351 | 3.45E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene067608 | 0.800271 | 1.56E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene067608 | 0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene067608 | 0.817737 | 2.82E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene067608 | 0.805426 | 1.34E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene067608 | 0.802286 | 6.03E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene067608 | 0.855903 | 4.61E-62 | -1.69E-46 |
| MS.gene051233 | MS.gene067608 | 0.806359 | 8.55E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene067608 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene067608 | 0.815733 | 7.95E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene067608 | 0.825564 | 4.38E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene067608 | 0.823065 | 1.69E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene067608 | 0.806505 | 7.96E-50 | -1.69E-46 |
| MS.gene053295 | MS.gene067608 | 0.808064 | 3.72E-50 | -1.69E-46 |
| MS.gene053786 | MS.gene067608 | 0.807235 | 5.58E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene067608 | 0.809854 | 1.54E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene067608 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene067608 | 0.834794 | 2.44E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene067608 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene067608 | -0.830916 | 2.24E-55 | -1.69E-46 |
| MS.gene059146 | MS.gene067608 | 0.845825 | 3.19E-59 | -1.69E-46 |
| MS.gene059170 | MS.gene067608 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene067608 | 0.840797 | 7.00E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene067608 | 0.842759 | 2.13E-58 | -1.69E-46 |
| MS.gene060563 | MS.gene067608 | 0.801695 | 7.98E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene067608 | 0.831833 | 1.33E-55 | -1.69E-46 |
| MS.gene060869 | MS.gene067608 | 0.807045 | 6.12E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene067608 | 0.821028 | 5.02E-53 | -1.69E-46 |
| MS.gene060932 | MS.gene067608 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene067608 | 0.829009 | 6.54E-55 | -1.69E-46 |
| MS.gene061160 | MS.gene067608 | 0.806903 | 6.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067608.t1 | MTR_4g030960 | 96.015 | 527 | 18 | 2 | 1 | 525 | 1 | 526 | 0.0 | 1028 |
| MS.gene067608.t1 | MTR_1g069420 | 81.559 | 526 | 87 | 2 | 1 | 525 | 1 | 517 | 0.0 | 849 |
| MS.gene067608.t1 | MTR_3g006320 | 60.452 | 531 | 182 | 10 | 1 | 525 | 1 | 509 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067608.t1 | AT1G71360 | 47.544 | 509 | 244 | 9 | 22 | 514 | 16 | 517 | 2.40e-144 | 428 |
| MS.gene067608.t1 | AT1G71360 | 47.544 | 509 | 244 | 9 | 22 | 514 | 42 | 543 | 8.67e-144 | 427 |
| MS.gene067608.t1 | AT1G22882 | 46.809 | 517 | 202 | 11 | 48 | 510 | 80 | 577 | 5.19e-134 | 404 |
| MS.gene067608.t1 | AT4G23950 | 45.133 | 339 | 151 | 5 | 197 | 525 | 170 | 483 | 9.75e-86 | 276 |
| MS.gene067608.t1 | AT4G23950 | 45.000 | 340 | 151 | 6 | 197 | 525 | 170 | 484 | 4.95e-84 | 271 |
Find 103 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTATTCTCCTCAGCTTA+TGG | 0.167447 | 4.1:-69769589 | MS.gene067608:CDS |
| TTCAGGTATCTCACCCATTT+TGG | 0.194693 | 4.1:+69767934 | None:intergenic |
| AGACGTAAATTTATTTGTTT+TGG | 0.203943 | 4.1:-69767542 | MS.gene067608:CDS |
| CCTATTGATATTTCTTCTTC+TGG | 0.216225 | 4.1:-69769662 | MS.gene067608:CDS |
| TTGTTCTTAAAGAGCCAAAA+TGG | 0.262822 | 4.1:-69767948 | MS.gene067608:CDS |
| TAGATCACGTAAAGCTCTTT+TGG | 0.262973 | 4.1:-69769714 | MS.gene067608:CDS |
| ATCCCTGCTTAATATATTAG+AGG | 0.264131 | 4.1:+69768191 | None:intergenic |
| GGCTTTGAAGATTCAACTTC+AGG | 0.266206 | 4.1:+69767917 | None:intergenic |
| TTTCGGTTGGATTATCAAAA+TGG | 0.280038 | 4.1:-69768689 | MS.gene067608:CDS |
| GATTTCAAAGTCTTTCAAAT+TGG | 0.322234 | 4.1:+69768053 | None:intergenic |
| TGAACTTTCCAACAGATGTT+TGG | 0.325943 | 4.1:-69768020 | MS.gene067608:CDS |
| AAGTACGAACTTTCTGCATT+AGG | 0.328303 | 4.1:+69767566 | None:intergenic |
| ACATGAAACGGCAAACATTA+AGG | 0.334447 | 4.1:-69767656 | MS.gene067608:CDS |
| ATGCCAGTGATCTCAATTCT+TGG | 0.334479 | 4.1:-69767269 | MS.gene067608:CDS |
| TTTATTAGAACCTAAAACTT+TGG | 0.343919 | 4.1:+69768227 | None:intergenic |
| GAACTTTCCAACAGATGTTT+GGG | 0.347879 | 4.1:-69768019 | MS.gene067608:CDS |
| CCAGAAGAAGAAATATCAAT+AGG | 0.363127 | 4.1:+69769662 | None:intergenic |
| AATGTTTGCCGTTTCATGTT+TGG | 0.366928 | 4.1:+69767660 | None:intergenic |
| CAACAAGTTGGCAGGATGCC+TGG | 0.376214 | 4.1:-69767607 | MS.gene067608:CDS |
| CGGATTTCTTCAACTGGATC+AGG | 0.377073 | 4.1:+69767631 | None:intergenic |
| TCGAAATGTAATACATAGAT+TGG | 0.383487 | 4.1:-69768295 | MS.gene067608:CDS |
| CAGATGTTTGGGATTTCCTT+GGG | 0.397990 | 4.1:-69768008 | MS.gene067608:CDS |
| AAAGAATCTCATTGATCATC+AGG | 0.399245 | 4.1:-69767413 | MS.gene067608:CDS |
| TGTTGACGGATTTCTTCAAC+TGG | 0.401246 | 4.1:+69767625 | None:intergenic |
| ACAGATGTTTGGGATTTCCT+TGG | 0.426261 | 4.1:-69768009 | MS.gene067608:CDS |
| TTATCTCGGGCTGTGCCTCT+TGG | 0.428365 | 4.1:-69768378 | MS.gene067608:CDS |
| AGATGGATCTGAAGAGCTTT+CGG | 0.433864 | 4.1:-69768706 | MS.gene067608:CDS |
| TTGAAAGACTTTGAAATCCA+TGG | 0.438972 | 4.1:-69768048 | MS.gene067608:CDS |
| CAAGACAATCTACTTGCATC+TGG | 0.441632 | 4.1:-69767802 | MS.gene067608:CDS |
| GGTGGAGATGCCGAGGCTAA+TGG | 0.450979 | 4.1:-69768561 | MS.gene067608:CDS |
| CAATTATGCTTCGGCATCAA+AGG | 0.453952 | 4.1:-69768253 | MS.gene067608:CDS |
| CTCTTCTTCCAAACATGAAA+CGG | 0.457428 | 4.1:-69767668 | MS.gene067608:CDS |
| GTGCCTCTAATATATTAAGC+AGG | 0.461361 | 4.1:-69768194 | MS.gene067608:CDS |
| AACAAGTTGGCAGGATGCCT+GGG | 0.465917 | 4.1:-69767606 | MS.gene067608:CDS |
| TTGAGCATGCCTCACATTCG+AGG | 0.476058 | 4.1:+69767975 | None:intergenic |
| AAAAGTCTGATATCTTATCT+CGG | 0.477926 | 4.1:-69768392 | MS.gene067608:CDS |
| CGAAATCCGTGTTCTGTGGT+GGG | 0.479734 | 4.1:-69768153 | MS.gene067608:CDS |
| ATCAGTTCTAAAGTTAAGTC+AGG | 0.481166 | 4.1:-69768330 | MS.gene067608:CDS |
| TGTTCAATCACAGCAGGATC+AGG | 0.490358 | 4.1:+69767742 | None:intergenic |
| CGATGCTTGCTTTCCGTCGG+AGG | 0.491001 | 4.1:-69768601 | MS.gene067608:CDS |
| GGATCTGAAGAGCTTTCGGT+TGG | 0.496922 | 4.1:-69768702 | MS.gene067608:CDS |
| TTAGTTAGTGAGTCACAAAC+TGG | 0.499388 | 4.1:-69768537 | MS.gene067608:CDS |
| TGTTCTTAAAGAGCCAAAAT+GGG | 0.500054 | 4.1:-69767947 | MS.gene067608:CDS |
| TCGAAATCCGTGTTCTGTGG+TGG | 0.500346 | 4.1:-69768154 | MS.gene067608:CDS |
| GCATCCTGCCAACTTGTTGA+CGG | 0.500920 | 4.1:+69767611 | None:intergenic |
| AAAGTCTGATATCTTATCTC+GGG | 0.500962 | 4.1:-69768391 | MS.gene067608:CDS |
| GGTTCTAATAAAGAAGGAAA+AGG | 0.501234 | 4.1:-69768216 | MS.gene067608:CDS |
| GTCTTGATGAATTCAAGAGC+AGG | 0.506199 | 4.1:-69768356 | MS.gene067608:CDS |
| AGGAAATCCCAAACATCTGT+TGG | 0.507573 | 4.1:+69768012 | None:intergenic |
| GAAGAAGAGATATCTGAAGC+AGG | 0.516512 | 4.1:+69767682 | None:intergenic |
| GAGGCTTTAATATATTCTAA+AGG | 0.521045 | 4.1:-69768582 | MS.gene067608:CDS |
| TGCAGAATACAATTATGCTT+CGG | 0.521102 | 4.1:-69768262 | MS.gene067608:CDS |
| TTGGAAAGTTCAGACTTCCA+TGG | 0.523368 | 4.1:+69768031 | None:intergenic |
| CAGAGATTTCACAAAATCCA+TGG | 0.536981 | 4.1:+69768655 | None:intergenic |
| TGAACATGTTCAATCACAGC+AGG | 0.538033 | 4.1:+69767736 | None:intergenic |
| TCACAAACTGGTAGGGAAAG+TGG | 0.547155 | 4.1:-69768525 | MS.gene067608:CDS |
| AAATCCGTCAACAAGTTGGC+AGG | 0.547210 | 4.1:-69767615 | MS.gene067608:CDS |
| AATTATGCTTCGGCATCAAA+GGG | 0.548259 | 4.1:-69768252 | MS.gene067608:CDS |
| AGTCTTTCAAATTGGAAGAG+TGG | 0.555467 | 4.1:+69768061 | None:intergenic |
| TAATTGTATTCTGCACCGCC+AGG | 0.555812 | 4.1:+69768270 | None:intergenic |
| AATCTACTTGCATCTGGAGA+AGG | 0.555840 | 4.1:-69767796 | MS.gene067608:CDS |
| CTTCCAAGAATTGAGATCAC+TGG | 0.557290 | 4.1:+69767266 | None:intergenic |
| CAATCACAGCAGGATCAGGA+TGG | 0.558041 | 4.1:+69767746 | None:intergenic |
| AGAACTTTCAGAAGAAACCT+TGG | 0.560587 | 4.1:-69768115 | MS.gene067608:CDS |
| TAGTGAGTCACAAACTGGTA+GGG | 0.560835 | 4.1:-69768532 | MS.gene067608:CDS |
| AGTGGTGCTTATGCGGTACC+TGG | 0.565403 | 4.1:-69768507 | MS.gene067608:CDS |
| TCTAAAGTTAAGTCAGGCAC+TGG | 0.565512 | 4.1:-69768324 | MS.gene067608:CDS |
| CGAATGTGAGGCATGCTCAA+AGG | 0.565768 | 4.1:-69767972 | MS.gene067608:CDS |
| AATTTCCCCACCACAGAACA+CGG | 0.575454 | 4.1:+69768147 | None:intergenic |
| AATCACAGCAGGATCAGGAT+GGG | 0.580916 | 4.1:+69767747 | None:intergenic |
| TTAGTGAGTCACAAACTGGT+AGG | 0.583204 | 4.1:-69768533 | MS.gene067608:CDS |
| AGAGATATCTGAAGCAGGGA+CGG | 0.584287 | 4.1:+69767687 | None:intergenic |
| ATCCTCCAGCATCCTCTCAA+CGG | 0.584718 | 4.1:+69767837 | None:intergenic |
| ATCTTGAGAACAGTATCCCC+AGG | 0.590052 | 4.1:+69767589 | None:intergenic |
| GAATATATTAAAGCCTCCGA+CGG | 0.590248 | 4.1:+69768588 | None:intergenic |
| GAAGAAATCCGTCAACAAGT+TGG | 0.592762 | 4.1:-69767619 | MS.gene067608:CDS |
| GCTTTAATATATTCTAAAGG+TGG | 0.593320 | 4.1:-69768579 | MS.gene067608:CDS |
| TGCCTCTAATATATTAAGCA+GGG | 0.599484 | 4.1:-69768193 | MS.gene067608:CDS |
| GGATGCCGTTGAGAGGATGC+TGG | 0.600025 | 4.1:-69767842 | MS.gene067608:CDS |
| GTAATACATAGATTGGAGCC+TGG | 0.603227 | 4.1:-69768288 | MS.gene067608:CDS |
| TTCTAAAGGTGGAGATGCCG+AGG | 0.608474 | 4.1:-69768568 | MS.gene067608:CDS |
| AATCGATGCTTGCTTTCCGT+CGG | 0.608628 | 4.1:-69768604 | MS.gene067608:CDS |
| ATCACAGCAGGATCAGGATG+GGG | 0.610550 | 4.1:+69767748 | None:intergenic |
| TACTGATTCTGCTAATAGAG+AGG | 0.611265 | 4.1:-69768466 | MS.gene067608:CDS |
| TTGGTGTGGATGCCGTTGAG+AGG | 0.612570 | 4.1:-69767849 | MS.gene067608:CDS |
| ACTAACTAAACCATTAGCCT+CGG | 0.613554 | 4.1:+69768551 | None:intergenic |
| TATTTCTATAGTATCTACCA+AGG | 0.616012 | 4.1:+69768098 | None:intergenic |
| AAAGAGTATAGCAAAGACAC+AGG | 0.618523 | 4.1:-69767475 | MS.gene067608:CDS |
| GAAATCCGTGTTCTGTGGTG+GGG | 0.619176 | 4.1:-69768152 | MS.gene067608:CDS |
| TCTTCGAAATCCGTGTTCTG+TGG | 0.620035 | 4.1:-69768157 | MS.gene067608:CDS |
| AATAAAATTCAGAACCGTAG+TGG | 0.621096 | 4.1:+69767896 | None:intergenic |
| TCTTGATGAATTCAAGAGCA+GGG | 0.621293 | 4.1:-69768355 | MS.gene067608:CDS |
| AGCTTATGGATCAGTTACAC+AGG | 0.623244 | 4.1:-69769575 | MS.gene067608:intron |
| TTGAATCTTCAAAGCCACTA+CGG | 0.624116 | 4.1:-69767910 | MS.gene067608:CDS |
| AAATGGAATGAAGTGAACCA+TGG | 0.624684 | 4.1:-69768672 | MS.gene067608:CDS |
| AAGAAGAGATATCTGAAGCA+GGG | 0.630258 | 4.1:+69767683 | None:intergenic |
| TAGGGAAAGTGGTGCTTATG+CGG | 0.633054 | 4.1:-69768514 | MS.gene067608:CDS |
| TCGAGGCAGTAAAATTCCCA+AGG | 0.650182 | 4.1:+69767992 | None:intergenic |
| TTGAATTCATCAAGACCAAG+AGG | 0.657165 | 4.1:+69768363 | None:intergenic |
| TGTAACTGATCCATAAGCTG+AGG | 0.664562 | 4.1:+69769579 | None:intergenic |
| ACAAGTTGGCAGGATGCCTG+GGG | 0.671945 | 4.1:-69767605 | MS.gene067608:CDS |
| TGCCGTTGAGAGGATGCTGG+AGG | 0.725275 | 4.1:-69767839 | MS.gene067608:CDS |
| ATACATAGATTGGAGCCTGG+CGG | 0.731549 | 4.1:-69768285 | MS.gene067608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATAGAAAGTAGTA+TGG | + | chr4.1:69769608-69769627 | None:intergenic | 15.0% |
| !! | TATTTGAATCTATCTAAAAA+GGG | + | chr4.1:69768104-69768123 | None:intergenic | 15.0% |
| !!! | ATACTACTTTCTATTAATTT+TGG | - | chr4.1:69769607-69769626 | MS.gene067608:CDS | 15.0% |
| !!! | TTAATTTTGGAAATGATTTT+TGG | - | chr4.1:69769620-69769639 | MS.gene067608:CDS | 15.0% |
| !! | ATCCTGAAACTTATATATTA+TGG | - | chr4.1:69767960-69767979 | MS.gene067608:CDS | 20.0% |
| !! | CTATTTGAATCTATCTAAAA+AGG | + | chr4.1:69768105-69768124 | None:intergenic | 20.0% |
| !! | TTATTATCTTTGTATGTAGA+TGG | - | chr4.1:69768205-69768224 | MS.gene067608:CDS | 20.0% |
| !! | TTCCATAATATATAAGTTTC+AGG | + | chr4.1:69767965-69767984 | None:intergenic | 20.0% |
| !! | TTTATTAGAACCTAAAACTT+TGG | + | chr4.1:69768704-69768723 | None:intergenic | 20.0% |
| !!! | AGACGTAAATTTATTTGTTT+TGG | - | chr4.1:69769386-69769405 | MS.gene067608:intron | 20.0% |
| !!! | CAATTTTTATGAACTTTCTT+TGG | - | chr4.1:69767298-69767317 | MS.gene067608:intron | 20.0% |
| !!! | CTTTTTAGATAGATTCAAAT+AGG | - | chr4.1:69768103-69768122 | MS.gene067608:CDS | 20.0% |
| !!! | TAAATTTATTTGTTTTGGAG+CGG | - | chr4.1:69769391-69769410 | MS.gene067608:intron | 20.0% |
| !!! | TTTTCTTTATTTATATCACC+AGG | + | chr4.1:69768442-69768461 | None:intergenic | 20.0% |
| !!! | TTTTTCTTATAGATAGATGT+TGG | - | chr4.1:69767753-69767772 | MS.gene067608:CDS | 20.0% |
| ! | AAAAGTCTGATATCTTATCT+CGG | - | chr4.1:69768536-69768555 | MS.gene067608:CDS | 25.0% |
| ! | AGATAGAGATTATATAACAC+TGG | - | chr4.1:69768070-69768089 | MS.gene067608:CDS | 25.0% |
| ! | ATCAAGCATAAACATTGATA+TGG | - | chr4.1:69767420-69767439 | MS.gene067608:CDS | 25.0% |
| ! | ATCTAACTTTGGATAACTTT+AGG | - | chr4.1:69767992-69768011 | MS.gene067608:CDS | 25.0% |
| ! | ATGTAGCATAAACATTGATA+TGG | - | chr4.1:69767569-69767588 | MS.gene067608:CDS | 25.0% |
| ! | GATTTCAAAGTCTTTCAAAT+TGG | + | chr4.1:69768878-69768897 | None:intergenic | 25.0% |
| ! | GGAAATAGATTATCTAACTT+TGG | - | chr4.1:69767981-69768000 | MS.gene067608:CDS | 25.0% |
| ! | GTTCATAAAAAAACTCTTGA+GGG | - | chr4.1:69769210-69769229 | MS.gene067608:intron | 25.0% |
| ! | TCGAAATGTAATACATAGAT+TGG | - | chr4.1:69768633-69768652 | MS.gene067608:CDS | 25.0% |
| ! | TGTTCATAAAAAAACTCTTG+AGG | - | chr4.1:69769209-69769228 | MS.gene067608:intron | 25.0% |
| ! | TTCATAAAAAAACTCTTGAG+GGG | - | chr4.1:69769211-69769230 | MS.gene067608:intron | 25.0% |
| !! | GAGGCTTTAATATATTCTAA+AGG | - | chr4.1:69768346-69768365 | MS.gene067608:CDS | 25.0% |
| !! | GCTTTAATATATTCTAAAGG+TGG | - | chr4.1:69768349-69768368 | MS.gene067608:CDS | 25.0% |
| !! | TATTTCTATAGTATCTACCA+AGG | + | chr4.1:69768833-69768852 | None:intergenic | 25.0% |
| !!! | CATATCTCATAGTCTTATAT+TGG | - | chr4.1:69768177-69768196 | MS.gene067608:CDS | 25.0% |
| !!! | GTTTTAGGTTCTAATAAAGA+AGG | - | chr4.1:69768706-69768725 | MS.gene067608:CDS | 25.0% |
| !!! | TTCTTTGGTTTTTGTTTTGT+GGG | - | chr4.1:69767313-69767332 | MS.gene067608:intron | 25.0% |
| !!! | TTTCTTTGGTTTTTGTTTTG+TGG | - | chr4.1:69767312-69767331 | MS.gene067608:intron | 25.0% |
| AAAATATGGAGAGAAAATGG+AGG | - | chr4.1:69768036-69768055 | MS.gene067608:CDS | 30.0% | |
| AAAGAATCTCATTGATCATC+AGG | - | chr4.1:69769515-69769534 | MS.gene067608:intron | 30.0% | |
| AAAGTCTGATATCTTATCTC+GGG | - | chr4.1:69768537-69768556 | MS.gene067608:CDS | 30.0% | |
| AAATATGGAGAGAAAATGGA+GGG | - | chr4.1:69768037-69768056 | MS.gene067608:CDS | 30.0% | |
| AACTAACCACTAACATTTGT+CGG | + | chr4.1:69767902-69767921 | None:intergenic | 30.0% | |
| AATAAAATTCAGAACCGTAG+TGG | + | chr4.1:69769035-69769054 | None:intergenic | 30.0% | |
| ACATTAAACAAGTAGTTCGT+AGG | + | chr4.1:69767837-69767856 | None:intergenic | 30.0% | |
| ATCCCTGCTTAATATATTAG+AGG | + | chr4.1:69768740-69768759 | None:intergenic | 30.0% | |
| CCAGAAGAAGAAATATCAAT+AGG | + | chr4.1:69767269-69767288 | None:intergenic | 30.0% | |
| CCTATTGATATTTCTTCTTC+TGG | - | chr4.1:69767266-69767285 | MS.gene067608:CDS | 30.0% | |
| TGCAGAATACAATTATGCTT+CGG | - | chr4.1:69768666-69768685 | MS.gene067608:CDS | 30.0% | |
| TGCCTCTAATATATTAAGCA+GGG | - | chr4.1:69768735-69768754 | MS.gene067608:intron | 30.0% | |
| TGGAAAATATGGAGAGAAAA+TGG | - | chr4.1:69768033-69768052 | MS.gene067608:CDS | 30.0% | |
| TGTTCTTAAAGAGCCAAAAT+GGG | - | chr4.1:69768981-69769000 | MS.gene067608:intron | 30.0% | |
| TTCTTATAGATAGATGTTGG+TGG | - | chr4.1:69767756-69767775 | MS.gene067608:CDS | 30.0% | |
| TTGAATCTATCTAAAAAGGG+AGG | + | chr4.1:69768101-69768120 | None:intergenic | 30.0% | |
| TTGTTCTTAAAGAGCCAAAA+TGG | - | chr4.1:69768980-69768999 | MS.gene067608:intron | 30.0% | |
| TTTCGGTTGGATTATCAAAA+TGG | - | chr4.1:69768239-69768258 | MS.gene067608:CDS | 30.0% | |
| ! | GGTTCTAATAAAGAAGGAAA+AGG | - | chr4.1:69768712-69768731 | MS.gene067608:intron | 30.0% |
| ! | TGATAATCCTGTTTGAAGTA+CGG | - | chr4.1:69767710-69767729 | MS.gene067608:CDS | 30.0% |
| !! | ATCAGTTCTAAAGTTAAGTC+AGG | - | chr4.1:69768598-69768617 | MS.gene067608:CDS | 30.0% |
| !! | TTGAAAGACTTTGAAATCCA+TGG | - | chr4.1:69768880-69768899 | MS.gene067608:intron | 30.0% |
| !!! | ATGTTGGTGGTTATTTTGTT+TGG | - | chr4.1:69767769-69767788 | MS.gene067608:CDS | 30.0% |
| !!! | GTTAGTGGTTAGTTTGTTTT+GGG | - | chr4.1:69767908-69767927 | MS.gene067608:CDS | 30.0% |
| !!! | TCTTTGGTTTTTGTTTTGTG+GGG | - | chr4.1:69767314-69767333 | MS.gene067608:intron | 30.0% |
| !!! | TGTTAGTGGTTAGTTTGTTT+TGG | - | chr4.1:69767907-69767926 | MS.gene067608:CDS | 30.0% |
| !!! | TGTTGGTGGTTATTTTGTTT+GGG | - | chr4.1:69767770-69767789 | MS.gene067608:CDS | 30.0% |
| !!! | TTAGTGGTTAGTTTGTTTTG+GGG | - | chr4.1:69767909-69767928 | MS.gene067608:CDS | 30.0% |
| !!! | TTCAAGATAATGCTGTTTTG+AGG | - | chr4.1:69769716-69769735 | MS.gene067608:CDS | 30.0% |
| AAATGGAATGAAGTGAACCA+TGG | - | chr4.1:69768256-69768275 | MS.gene067608:CDS | 35.0% | |
| AAGTACGAACTTTCTGCATT+AGG | + | chr4.1:69769365-69769384 | None:intergenic | 35.0% | |
| AATTATGCTTCGGCATCAAA+GGG | - | chr4.1:69768676-69768695 | MS.gene067608:CDS | 35.0% | |
| ACATGAAACGGCAAACATTA+AGG | - | chr4.1:69769272-69769291 | MS.gene067608:intron | 35.0% | |
| ACTTGTTTAATGTGCCAATC+CGG | - | chr4.1:69767844-69767863 | MS.gene067608:CDS | 35.0% | |
| AGAACTTTCAGAAGAAACCT+TGG | - | chr4.1:69768813-69768832 | MS.gene067608:intron | 35.0% | |
| AGTCTTTCAAATTGGAAGAG+TGG | + | chr4.1:69768870-69768889 | None:intergenic | 35.0% | |
| ATGTAATCATATGCCTCATC+AGG | - | chr4.1:69767637-69767656 | MS.gene067608:CDS | 35.0% | |
| CAGAGATTTCACAAAATCCA+TGG | + | chr4.1:69768276-69768295 | None:intergenic | 35.0% | |
| CTCTTCTTCCAAACATGAAA+CGG | - | chr4.1:69769260-69769279 | MS.gene067608:intron | 35.0% | |
| GAACTTTCCAACAGATGTTT+GGG | - | chr4.1:69768909-69768928 | MS.gene067608:intron | 35.0% | |
| GAATATATTAAAGCCTCCGA+CGG | + | chr4.1:69768343-69768362 | None:intergenic | 35.0% | |
| GGATAACTTTAGGCATGAAA+AGG | - | chr4.1:69768002-69768021 | MS.gene067608:CDS | 35.0% | |
| GTGCCTCTAATATATTAAGC+AGG | - | chr4.1:69768734-69768753 | MS.gene067608:intron | 35.0% | |
| TCGTCAAATTAAGTATGTCC+AGG | + | chr4.1:69767509-69767528 | None:intergenic | 35.0% | |
| TCTTGATGAATTCAAGAGCA+GGG | - | chr4.1:69768573-69768592 | MS.gene067608:CDS | 35.0% | |
| TGAACTTTCCAACAGATGTT+TGG | - | chr4.1:69768908-69768927 | MS.gene067608:intron | 35.0% | |
| TTAAACAAGTAGTTCGTAGG+AGG | + | chr4.1:69767834-69767853 | None:intergenic | 35.0% | |
| TTAGTTAGTGAGTCACAAAC+TGG | - | chr4.1:69768391-69768410 | MS.gene067608:CDS | 35.0% | |
| TTGAATCTTCAAAGCCACTA+CGG | - | chr4.1:69769018-69769037 | MS.gene067608:intron | 35.0% | |
| TTGAATTCATCAAGACCAAG+AGG | + | chr4.1:69768568-69768587 | None:intergenic | 35.0% | |
| ! | AAAGAGTATAGCAAAGACAC+AGG | - | chr4.1:69769453-69769472 | MS.gene067608:intron | 35.0% |
| ! | AAGAAGAGATATCTGAAGCA+GGG | + | chr4.1:69769248-69769267 | None:intergenic | 35.0% |
| ! | AATGTTTGCCGTTTCATGTT+TGG | + | chr4.1:69769271-69769290 | None:intergenic | 35.0% |
| ! | ACTAACTAAACCATTAGCCT+CGG | + | chr4.1:69768380-69768399 | None:intergenic | 35.0% |
| ! | TAGATCACGTAAAGCTCTTT+TGG | - | chr4.1:69767214-69767233 | MS.gene067608:CDS | 35.0% |
| !! | CTAAGCGTTGTTGAAGTTTT+TGG | - | chr4.1:69769060-69769079 | MS.gene067608:intron | 35.0% |
| !! | GGAAGAATTTGTTGGTAGTA+GGG | - | chr4.1:69767932-69767951 | MS.gene067608:CDS | 35.0% |
| !! | TACTGATTCTGCTAATAGAG+AGG | - | chr4.1:69768462-69768481 | MS.gene067608:CDS | 35.0% |
| !!! | AAATGATTTTTGGCTCATGC+AGG | - | chr4.1:69769630-69769649 | MS.gene067608:CDS | 35.0% |
| !!! | ATTTGTTTTGGAGCGGTATA+TGG | - | chr4.1:69769398-69769417 | MS.gene067608:intron | 35.0% |
| !!! | GTTGGTGGTTATTTTGTTTG+GGG | - | chr4.1:69767771-69767790 | MS.gene067608:CDS | 35.0% |
| !!! | TAGTGGTTAGTTTGTTTTGG+GGG | - | chr4.1:69767910-69767929 | MS.gene067608:CDS | 35.0% |
| AAGACACCGACAAATGTTAG+TGG | - | chr4.1:69767893-69767912 | MS.gene067608:CDS | 40.0% | |
| AATCTACTTGCATCTGGAGA+AGG | - | chr4.1:69769132-69769151 | MS.gene067608:intron | 40.0% | |
| AGATGGATCTGAAGAGCTTT+CGG | - | chr4.1:69768222-69768241 | MS.gene067608:CDS | 40.0% | |
| AGCTTATGGATCAGTTACAC+AGG | - | chr4.1:69767353-69767372 | MS.gene067608:intron | 40.0% | |
| AGGAAATCCCAAACATCTGT+TGG | + | chr4.1:69768919-69768938 | None:intergenic | 40.0% | |
| ATGCCAGTGATCTCAATTCT+TGG | - | chr4.1:69769659-69769678 | MS.gene067608:CDS | 40.0% | |
| ATGTAATCATATGCGACACC+TGG | - | chr4.1:69767488-69767507 | MS.gene067608:CDS | 40.0% | |
| ATTCCTACCGTACTTCAAAC+AGG | + | chr4.1:69767720-69767739 | None:intergenic | 40.0% | |
| CAAGACAATCTACTTGCATC+TGG | - | chr4.1:69769126-69769145 | MS.gene067608:intron | 40.0% | |
| CAATTATGCTTCGGCATCAA+AGG | - | chr4.1:69768675-69768694 | MS.gene067608:CDS | 40.0% | |
| CTTCCAAGAATTGAGATCAC+TGG | + | chr4.1:69769665-69769684 | None:intergenic | 40.0% | |
| GAAGAAATCCGTCAACAAGT+TGG | - | chr4.1:69769309-69769328 | MS.gene067608:intron | 40.0% | |
| GTAATACATAGATTGGAGCC+TGG | - | chr4.1:69768640-69768659 | MS.gene067608:CDS | 40.0% | |
| GTCTTGATGAATTCAAGAGC+AGG | - | chr4.1:69768572-69768591 | MS.gene067608:CDS | 40.0% | |
| TAGTGAGTCACAAACTGGTA+GGG | - | chr4.1:69768396-69768415 | MS.gene067608:CDS | 40.0% | |
| TGAACATGTTCAATCACAGC+AGG | + | chr4.1:69769195-69769214 | None:intergenic | 40.0% | |
| TGCTTATTCTCCTCAGCTTA+TGG | - | chr4.1:69767339-69767358 | MS.gene067608:intron | 40.0% | |
| TGTAACTGATCCATAAGCTG+AGG | + | chr4.1:69767352-69767371 | None:intergenic | 40.0% | |
| TTAGTGAGTCACAAACTGGT+AGG | - | chr4.1:69768395-69768414 | MS.gene067608:CDS | 40.0% | |
| TTGGAAAGTTCAGACTTCCA+TGG | + | chr4.1:69768900-69768919 | None:intergenic | 40.0% | |
| ! | AATCCTGTTTGAAGTACGGT+AGG | - | chr4.1:69767714-69767733 | MS.gene067608:CDS | 40.0% |
| ! | ACAGATGTTTGGGATTTCCT+TGG | - | chr4.1:69768919-69768938 | MS.gene067608:intron | 40.0% |
| ! | AGGAGAGAGTGTGGAAAATA+TGG | - | chr4.1:69768022-69768041 | MS.gene067608:CDS | 40.0% |
| ! | ATTTTACTGCCTCGAATGTG+AGG | - | chr4.1:69768944-69768963 | MS.gene067608:intron | 40.0% |
| ! | CAGATGTTTGGGATTTCCTT+GGG | - | chr4.1:69768920-69768939 | MS.gene067608:intron | 40.0% |
| ! | GAAGAAGAGATATCTGAAGC+AGG | + | chr4.1:69769249-69769268 | None:intergenic | 40.0% |
| ! | TCAAAGGGAGCCAAAGTTTT+AGG | - | chr4.1:69768691-69768710 | MS.gene067608:CDS | 40.0% |
| ! | TCTAAAGTTAAGTCAGGCAC+TGG | - | chr4.1:69768604-69768623 | MS.gene067608:CDS | 40.0% |
| ! | TTCAGGTATCTCACCCATTT+TGG | + | chr4.1:69768997-69769016 | None:intergenic | 40.0% |
| !! | GGAAGAGTTTTGTGGTTACA+AGG | - | chr4.1:69767795-69767814 | MS.gene067608:CDS | 40.0% |
| !! | GGCTTTGAAGATTCAACTTC+AGG | + | chr4.1:69769014-69769033 | None:intergenic | 40.0% |
| !! | GGGAAGAATTTGTTGGTAGT+AGG | - | chr4.1:69767931-69767950 | MS.gene067608:CDS | 40.0% |
| !! | TGTTGACGGATTTCTTCAAC+TGG | + | chr4.1:69769306-69769325 | None:intergenic | 40.0% |
| !! | TTTTGGGGGGAAGAATTTGT+TGG | - | chr4.1:69767924-69767943 | MS.gene067608:CDS | 40.0% |
| !!! | AGTGGTTAGTTTGTTTTGGG+GGG | - | chr4.1:69767911-69767930 | MS.gene067608:CDS | 40.0% |
| !!! | CGTTGTTGAAGTTTTTGGTG+TGG | - | chr4.1:69769065-69769084 | MS.gene067608:intron | 40.0% |
| AAGTAGTTCGTAGGAGGTCT+GGG | + | chr4.1:69767828-69767847 | None:intergenic | 45.0% | |
| AATCACAGCAGGATCAGGAT+GGG | + | chr4.1:69769184-69769203 | None:intergenic | 45.0% | |
| AATCGATGCTTGCTTTCCGT+CGG | - | chr4.1:69768324-69768343 | MS.gene067608:CDS | 45.0% | |
| AATTTCCCCACCACAGAACA+CGG | + | chr4.1:69768784-69768803 | None:intergenic | 45.0% | |
| AGATTAAGCGTGTCCTGATG+AGG | + | chr4.1:69767653-69767672 | None:intergenic | 45.0% | |
| ATACATAGATTGGAGCCTGG+CGG | - | chr4.1:69768643-69768662 | MS.gene067608:CDS | 45.0% | |
| ATCTTGAGAACAGTATCCCC+AGG | + | chr4.1:69769342-69769361 | None:intergenic | 45.0% | |
| CGGATTTCTTCAACTGGATC+AGG | + | chr4.1:69769300-69769319 | None:intergenic | 45.0% | |
| GATATGGACACACGTCTACA+AGG | - | chr4.1:69767436-69767455 | MS.gene067608:CDS | 45.0% | |
| TAATTGTATTCTGCACCGCC+AGG | + | chr4.1:69768661-69768680 | None:intergenic | 45.0% | |
| TAGGGAAAGTGGTGCTTATG+CGG | - | chr4.1:69768414-69768433 | MS.gene067608:CDS | 45.0% | |
| TCACAAACTGGTAGGGAAAG+TGG | - | chr4.1:69768403-69768422 | MS.gene067608:CDS | 45.0% | |
| TCGAGGCAGTAAAATTCCCA+AGG | + | chr4.1:69768939-69768958 | None:intergenic | 45.0% | |
| TCTTCGAAATCCGTGTTCTG+TGG | - | chr4.1:69768771-69768790 | MS.gene067608:intron | 45.0% | |
| TGTTCAATCACAGCAGGATC+AGG | + | chr4.1:69769189-69769208 | None:intergenic | 45.0% | |
| ! | AAATCCGTCAACAAGTTGGC+AGG | - | chr4.1:69769313-69769332 | MS.gene067608:intron | 45.0% |
| ! | AGAGATATCTGAAGCAGGGA+CGG | + | chr4.1:69769244-69769263 | None:intergenic | 45.0% |
| ! | TTTGGGGAGGAAGAGTTTTG+TGG | - | chr4.1:69767787-69767806 | MS.gene067608:CDS | 45.0% |
| !! | GGTGGTTATTTTGTTTGGGG+AGG | - | chr4.1:69767774-69767793 | MS.gene067608:CDS | 45.0% |
| AATGTGCCAATCCGGACTAC+TGG | - | chr4.1:69767852-69767871 | MS.gene067608:CDS | 50.0% | |
| ATCACAGCAGGATCAGGATG+GGG | + | chr4.1:69769183-69769202 | None:intergenic | 50.0% | |
| ATCCTCCAGCATCCTCTCAA+CGG | + | chr4.1:69769094-69769113 | None:intergenic | 50.0% | |
| ATGTGCCAATCCGGACTACT+GGG | - | chr4.1:69767853-69767872 | MS.gene067608:CDS | 50.0% | |
| CAAGTAGTTCGTAGGAGGTC+TGG | + | chr4.1:69767829-69767848 | None:intergenic | 50.0% | |
| CAATCACAGCAGGATCAGGA+TGG | + | chr4.1:69769185-69769204 | None:intergenic | 50.0% | |
| CGAAATCCGTGTTCTGTGGT+GGG | - | chr4.1:69768775-69768794 | MS.gene067608:intron | 50.0% | |
| CGAATGTGAGGCATGCTCAA+AGG | - | chr4.1:69768956-69768975 | MS.gene067608:intron | 50.0% | |
| GAAATCCGTGTTCTGTGGTG+GGG | - | chr4.1:69768776-69768795 | MS.gene067608:intron | 50.0% | |
| GGATCTGAAGAGCTTTCGGT+TGG | - | chr4.1:69768226-69768245 | MS.gene067608:CDS | 50.0% | |
| GGCATGAAAAGGAGAGAGTG+TGG | - | chr4.1:69768013-69768032 | MS.gene067608:CDS | 50.0% | |
| TCGAAATCCGTGTTCTGTGG+TGG | - | chr4.1:69768774-69768793 | MS.gene067608:intron | 50.0% | |
| TGTCTTACATCCCGATGGAG+TGG | + | chr4.1:69767879-69767898 | None:intergenic | 50.0% | |
| TTGAGCATGCCTCACATTCG+AGG | + | chr4.1:69768956-69768975 | None:intergenic | 50.0% | |
| ! | AACAAGTTGGCAGGATGCCT+GGG | - | chr4.1:69769322-69769341 | MS.gene067608:intron | 50.0% |
| ! | TTCTAAAGGTGGAGATGCCG+AGG | - | chr4.1:69768360-69768379 | MS.gene067608:CDS | 50.0% |
| !! | GCATCCTGCCAACTTGTTGA+CGG | + | chr4.1:69769320-69769339 | None:intergenic | 50.0% |
| AGTGGTGCTTATGCGGTACC+TGG | - | chr4.1:69768421-69768440 | MS.gene067608:CDS | 55.0% | |
| TTATCTCGGGCTGTGCCTCT+TGG | - | chr4.1:69768550-69768569 | MS.gene067608:CDS | 55.0% | |
| TTGGTGTGGATGCCGTTGAG+AGG | - | chr4.1:69769079-69769098 | MS.gene067608:intron | 55.0% | |
| ! | ACAAGTTGGCAGGATGCCTG+GGG | - | chr4.1:69769323-69769342 | MS.gene067608:intron | 55.0% |
| ! | CAACAAGTTGGCAGGATGCC+TGG | - | chr4.1:69769321-69769340 | MS.gene067608:intron | 55.0% |
| ! | GTCGGTGTCTTACATCCCGA+TGG | + | chr4.1:69767884-69767903 | None:intergenic | 55.0% |
| AGTGGCCCAGTAGTCCGGAT+TGG | + | chr4.1:69767861-69767880 | None:intergenic | 60.0% | |
| CGATGCTTGCTTTCCGTCGG+AGG | - | chr4.1:69768327-69768346 | MS.gene067608:CDS | 60.0% | |
| GACTACTGGGCCACTCCATC+GGG | - | chr4.1:69767866-69767885 | MS.gene067608:CDS | 60.0% | |
| GATGGAGTGGCCCAGTAGTC+CGG | + | chr4.1:69767866-69767885 | None:intergenic | 60.0% | |
| GGACTACTGGGCCACTCCAT+CGG | - | chr4.1:69767865-69767884 | MS.gene067608:CDS | 60.0% | |
| GGATGCCGTTGAGAGGATGC+TGG | - | chr4.1:69769086-69769105 | MS.gene067608:intron | 60.0% | |
| GGTGGAGATGCCGAGGCTAA+TGG | - | chr4.1:69768367-69768386 | MS.gene067608:CDS | 60.0% | |
| TGCCGTTGAGAGGATGCTGG+AGG | - | chr4.1:69769089-69769108 | MS.gene067608:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 69767209 | 69769741 | 69767209 | ID=MS.gene067608 |
| chr4.1 | mRNA | 69767209 | 69769741 | 69767209 | ID=MS.gene067608.t1;Parent=MS.gene067608 |
| chr4.1 | exon | 69769576 | 69769741 | 69769576 | ID=MS.gene067608.t1.exon1;Parent=MS.gene067608.t1 |
| chr4.1 | CDS | 69769576 | 69769741 | 69769576 | ID=cds.MS.gene067608.t1;Parent=MS.gene067608.t1 |
| chr4.1 | exon | 69767405 | 69768726 | 69767405 | ID=MS.gene067608.t1.exon2;Parent=MS.gene067608.t1 |
| chr4.1 | CDS | 69767405 | 69768726 | 69767405 | ID=cds.MS.gene067608.t1;Parent=MS.gene067608.t1 |
| chr4.1 | exon | 69767209 | 69767298 | 69767209 | ID=MS.gene067608.t1.exon3;Parent=MS.gene067608.t1 |
| chr4.1 | CDS | 69767209 | 69767298 | 69767209 | ID=cds.MS.gene067608.t1;Parent=MS.gene067608.t1 |
| Gene Sequence |
| Protein sequence |
