Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23623.t1 | XP_013444993.1 | 96.6 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 1.10E-174 | 622.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23623.t1 | Q9LE33 | 50.3 | 322 | 151 | 4 | 6 | 324 | 7 | 322 | 5.7e-82 | 305.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23623.t1 | A0A072TQA0 | 96.6 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 8.2e-175 | 622.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene23623 | 0.808387 | 3.18E-50 | -1.69E-46 |
| MS.gene049907 | MS.gene23623 | 0.806367 | 8.52E-50 | -1.69E-46 |
| MS.gene056942 | MS.gene23623 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene23623 | 0.803137 | 4.02E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene23623 | 0.822523 | 2.26E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene23623 | 0.80962 | 1.73E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene23623 | 0.807302 | 5.40E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene23623 | 0.805122 | 1.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23623 | MS.gene07262 | PPI |
| MS.gene23623 | MS.gene33394 | PPI |
| MS.gene24946 | MS.gene23623 | PPI |
| MS.gene23623 | MS.gene74946 | PPI |
| MS.gene23623 | MS.gene030057 | PPI |
| MS.gene23623 | MS.gene062351 | PPI |
| MS.gene23623 | MS.gene20834 | PPI |
| MS.gene20783 | MS.gene23623 | PPI |
| MS.gene23623 | MS.gene33395 | PPI |
| MS.gene23623 | MS.gene24945 | PPI |
| MS.gene017129 | MS.gene23623 | PPI |
| MS.gene038363 | MS.gene23623 | PPI |
| MS.gene23623 | MS.gene33396 | PPI |
| MS.gene23623 | MS.gene065032 | PPI |
| MS.gene23623 | MS.gene029300 | PPI |
| MS.gene23623 | MS.gene068263 | PPI |
| MS.gene23623 | MS.gene24947 | PPI |
| MS.gene23623 | MS.gene068259 | PPI |
| MS.gene23623 | MS.gene76198 | PPI |
| MS.gene23623 | MS.gene37513 | PPI |
| MS.gene23623 | MS.gene068262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23623.t1 | MTR_8g033390 | 96.626 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 0.0 | 644 |
| MS.gene23623.t1 | MTR_8g033410 | 59.119 | 318 | 129 | 1 | 5 | 322 | 9 | 325 | 3.32e-136 | 389 |
| MS.gene23623.t1 | MTR_8g033400 | 59.375 | 320 | 128 | 2 | 3 | 322 | 15 | 332 | 3.56e-136 | 390 |
| MS.gene23623.t1 | MTR_7g075830 | 50.163 | 307 | 130 | 6 | 36 | 324 | 15 | 316 | 1.07e-96 | 289 |
| MS.gene23623.t1 | MTR_4g013090 | 43.366 | 309 | 157 | 5 | 20 | 322 | 16 | 312 | 8.49e-88 | 266 |
| MS.gene23623.t1 | MTR_4g012960 | 44.484 | 281 | 148 | 2 | 42 | 322 | 37 | 309 | 1.03e-87 | 266 |
| MS.gene23623.t1 | MTR_4g013100 | 45.583 | 283 | 145 | 3 | 42 | 322 | 38 | 313 | 5.38e-87 | 264 |
| MS.gene23623.t1 | MTR_2g101840 | 45.338 | 311 | 153 | 6 | 18 | 322 | 14 | 313 | 4.44e-78 | 241 |
| MS.gene23623.t1 | MTR_4g013135 | 43.816 | 283 | 150 | 3 | 42 | 322 | 37 | 312 | 2.03e-72 | 226 |
| MS.gene23623.t1 | MTR_3g005970 | 27.007 | 274 | 175 | 5 | 65 | 318 | 107 | 375 | 3.46e-26 | 107 |
| MS.gene23623.t1 | MTR_4g005880 | 29.658 | 263 | 170 | 5 | 76 | 326 | 152 | 411 | 1.36e-24 | 104 |
| MS.gene23623.t1 | MTR_1g107480 | 29.811 | 265 | 167 | 7 | 76 | 326 | 119 | 378 | 2.92e-23 | 100 |
| MS.gene23623.t1 | MTR_1g112510 | 28.405 | 257 | 154 | 7 | 83 | 312 | 94 | 347 | 2.44e-22 | 96.7 |
| MS.gene23623.t1 | MTR_6g007170 | 27.692 | 260 | 171 | 5 | 65 | 313 | 111 | 364 | 7.82e-22 | 95.1 |
| MS.gene23623.t1 | MTR_6g007175 | 26.667 | 255 | 161 | 5 | 65 | 313 | 80 | 314 | 1.20e-16 | 79.7 |
| MS.gene23623.t1 | MTR_7g078990 | 26.106 | 226 | 158 | 4 | 98 | 315 | 97 | 321 | 1.98e-15 | 77.4 |
| MS.gene23623.t1 | MTR_4g013040 | 39.437 | 71 | 41 | 1 | 70 | 138 | 1 | 71 | 5.59e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23623.t1 | AT2G45630 | 50.462 | 325 | 150 | 5 | 3 | 322 | 19 | 337 | 5.44e-109 | 321 |
| MS.gene23623.t1 | AT1G12550 | 50.309 | 324 | 148 | 4 | 6 | 324 | 7 | 322 | 1.27e-104 | 309 |
| MS.gene23623.t1 | AT1G79870 | 43.533 | 317 | 167 | 5 | 8 | 322 | 6 | 312 | 2.25e-82 | 252 |
| MS.gene23623.t1 | AT1G79870 | 40.063 | 317 | 159 | 5 | 8 | 322 | 6 | 293 | 7.12e-72 | 224 |
| MS.gene23623.t1 | AT2G45630 | 43.506 | 154 | 77 | 4 | 3 | 152 | 19 | 166 | 1.55e-31 | 117 |
| MS.gene23623.t1 | AT1G72190 | 26.623 | 308 | 199 | 7 | 16 | 306 | 57 | 354 | 2.86e-26 | 107 |
| MS.gene23623.t1 | AT1G17745 | 29.720 | 286 | 181 | 9 | 56 | 326 | 125 | 405 | 5.02e-26 | 108 |
| MS.gene23623.t1 | AT4G34200 | 30.682 | 264 | 166 | 6 | 76 | 326 | 125 | 384 | 2.47e-25 | 106 |
| MS.gene23623.t1 | AT5G28310 | 34.197 | 193 | 75 | 3 | 131 | 322 | 91 | 232 | 1.05e-24 | 100 |
| MS.gene23623.t1 | AT1G17745 | 27.273 | 308 | 187 | 8 | 56 | 326 | 125 | 432 | 1.76e-24 | 104 |
| MS.gene23623.t1 | AT3G19480 | 31.395 | 258 | 158 | 7 | 76 | 319 | 110 | 362 | 2.02e-23 | 101 |
| MS.gene23623.t1 | AT5G14780 | 27.386 | 241 | 164 | 5 | 81 | 313 | 111 | 348 | 5.35e-22 | 95.5 |
| MS.gene23623.t1 | AT5G14780 | 27.386 | 241 | 164 | 5 | 81 | 313 | 99 | 336 | 7.45e-22 | 95.1 |
| MS.gene23623.t1 | AT5G14780 | 27.386 | 241 | 164 | 5 | 81 | 313 | 125 | 362 | 1.19e-21 | 94.7 |
| MS.gene23623.t1 | AT1G68010 | 27.907 | 258 | 165 | 3 | 83 | 319 | 94 | 351 | 2.22e-20 | 90.9 |
| MS.gene23623.t1 | AT1G68010 | 29.020 | 255 | 155 | 6 | 83 | 312 | 94 | 347 | 2.99e-20 | 90.9 |
| MS.gene23623.t1 | AT1G68010 | 28.906 | 256 | 155 | 7 | 83 | 312 | 94 | 348 | 1.29e-18 | 86.3 |
| MS.gene23623.t1 | AT1G01510 | 26.180 | 233 | 153 | 5 | 98 | 315 | 105 | 333 | 9.84e-13 | 69.3 |
Find 86 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATAGGCCTGAGGGTTT+GGG | 0.244134 | 8.1:-67730484 | None:intergenic |
| GGCCTGAGGGTTTGGGGTTT+AGG | 0.249977 | 8.1:-67730477 | None:intergenic |
| CTCGGAGGATGTGGCTGATA+TGG | 0.258496 | 8.1:+67730711 | MS.gene23623:CDS |
| CTTCCAAAAGTACTTGTTCT+TGG | 0.268392 | 8.1:+67730400 | MS.gene23623:CDS |
| CAGTGATAGGCCTGAGGGTT+TGG | 0.272695 | 8.1:-67730485 | None:intergenic |
| GATCCTTGGGATTTCCCTCT+TGG | 0.293816 | 8.1:+67730811 | MS.gene23623:CDS |
| CGCGACGACGGCATTCATTC+AGG | 0.317773 | 8.1:-67730657 | None:intergenic |
| ATGCCGTCGTCGCGGAATTC+AGG | 0.333564 | 8.1:+67730666 | MS.gene23623:CDS |
| CGAGTTGGAATTGTTGGATT+AGG | 0.338569 | 8.1:+67731321 | MS.gene23623:CDS |
| GGCGGGAACGTTCTGATCCT+TGG | 0.343806 | 8.1:+67730797 | MS.gene23623:CDS |
| AGTAAACAACGATGTCCTTT+TGG | 0.353511 | 8.1:+67731521 | MS.gene23623:CDS |
| ATATGCAGCGCTACAGAATA+TGG | 0.355416 | 8.1:-67730554 | None:intergenic |
| GGCAAGCGAGTTGGAATTGT+TGG | 0.356871 | 8.1:+67731315 | MS.gene23623:CDS |
| ACAATTGATCAAGTGTTTGA+TGG | 0.359013 | 8.1:+67731602 | MS.gene23623:CDS |
| GGAATTCAGGTTGCCGGTGC+TGG | 0.372744 | 8.1:+67730679 | MS.gene23623:CDS |
| GGACCAAGAACAAGTACTTT+TGG | 0.377384 | 8.1:-67730403 | None:intergenic |
| AGAAATTGCTGGTGCTGGTT+TGG | 0.382247 | 8.1:+67731629 | MS.gene23623:CDS |
| GAAGGGTTTATTGTAAATGT+TGG | 0.390642 | 8.1:+67731555 | MS.gene23623:CDS |
| ATTGTTGGATTAGGAAGTAT+TGG | 0.399827 | 8.1:+67731330 | MS.gene23623:CDS |
| TTGTTGATGGATTGTGGTTG+TGG | 0.413973 | 8.1:-67730525 | None:intergenic |
| GGATTTCCCTCTTGGATACA+AGG | 0.415287 | 8.1:+67730819 | MS.gene23623:CDS |
| GCGGGAACGTTCTGATCCTT+GGG | 0.419342 | 8.1:+67730798 | MS.gene23623:CDS |
| GGATGAATTGTTGCAGTGAT+AGG | 0.422185 | 8.1:-67730498 | None:intergenic |
| AATATGGCGGGAATTGTTGA+TGG | 0.425691 | 8.1:-67730538 | None:intergenic |
| ATGGATTGTGGTTGTGGGAA+AGG | 0.445567 | 8.1:-67730519 | None:intergenic |
| TCTATAACATTGGAATAGAA+AGG | 0.449303 | 8.1:-67731435 | None:intergenic |
| AACTTCACTGGACTAATTAG+TGG | 0.456808 | 8.1:-67731804 | None:intergenic |
| CGGGAATTGTTGATGGATTG+TGG | 0.457939 | 8.1:-67730531 | None:intergenic |
| ACTAATTAGTCCAGTGAAGT+TGG | 0.461367 | 8.1:+67731806 | MS.gene23623:CDS |
| TTTATTGTAAATGTTGGAAG+AGG | 0.472073 | 8.1:+67731561 | MS.gene23623:CDS |
| CGTCGCGGAATTCAGGTTGC+CGG | 0.475850 | 8.1:+67730673 | MS.gene23623:CDS |
| TGTTGATGGATTGTGGTTGT+GGG | 0.478601 | 8.1:-67730524 | None:intergenic |
| CAAGGCTGAGCGAGGGAAGA+AGG | 0.482908 | 8.1:-67730600 | None:intergenic |
| TGTTTACTATGTGTCGTGTT+CGG | 0.483207 | 8.1:-67731506 | None:intergenic |
| ATTGTAAATGTTGGAAGAGG+TGG | 0.499918 | 8.1:+67731564 | MS.gene23623:CDS |
| ATCGATATGTGAGGAGGTGG+CGG | 0.500364 | 8.1:+67730779 | MS.gene23623:CDS |
| GTTGAGAACGTCGGTAGTGA+TGG | 0.509803 | 8.1:-67730578 | None:intergenic |
| GTGATAGGCCTGAGGGTTTG+GGG | 0.518270 | 8.1:-67730483 | None:intergenic |
| TTCCTAAACCCCAAACCCTC+AGG | 0.518357 | 8.1:+67730475 | MS.gene23623:CDS |
| AGAGTAGAGTGATTCGAAGG+TGG | 0.520358 | 8.1:-67730440 | None:intergenic |
| GCTCTTTGCAATGGATAATG+TGG | 0.520923 | 8.1:+67731686 | MS.gene23623:CDS |
| CTTGTTGTCACCTCCAGTGT+TGG | 0.525756 | 8.1:+67730619 | MS.gene23623:CDS |
| AGTTACTCAACCAACTTCAC+TGG | 0.527156 | 8.1:-67731816 | None:intergenic |
| AGTTGCAAGATCTATAACAT+TGG | 0.528808 | 8.1:-67731445 | None:intergenic |
| CAAGAGGAAGGTGACGGTGG+CGG | 0.531512 | 8.1:+67730756 | MS.gene23623:CDS |
| TAGTTATCAGGCAAGCGAGT+TGG | 0.543767 | 8.1:+67731306 | MS.gene23623:intron |
| GTGAGAGTAGAGTGATTCGA+AGG | 0.550168 | 8.1:-67730443 | None:intergenic |
| TTGATCAAGTGTTTGATGGA+AGG | 0.551467 | 8.1:+67731606 | MS.gene23623:CDS |
| CGGATCGATATGTGAGGAGG+TGG | 0.555208 | 8.1:+67730776 | MS.gene23623:CDS |
| GAAGGAGAAATTGCTGGTGC+TGG | 0.558068 | 8.1:+67731624 | MS.gene23623:CDS |
| CTATAACATTGGAATAGAAA+GGG | 0.560035 | 8.1:-67731434 | None:intergenic |
| AGTTTGTGTGAACTTGTGGC+AGG | 0.560200 | 8.1:+67731753 | MS.gene23623:CDS |
| ACAGTAAAAGCTGCAGAATG+TGG | 0.564794 | 8.1:-67731717 | None:intergenic |
| ATTCAGGTTGCCGGTGCTGG+AGG | 0.565610 | 8.1:+67730682 | MS.gene23623:CDS |
| AAGGTGGAGAAGCATGTTGG+TGG | 0.565774 | 8.1:-67730424 | None:intergenic |
| TCGATATGTGAGGAGGTGGC+GGG | 0.566864 | 8.1:+67730780 | MS.gene23623:CDS |
| AACTTCTAGCGACGCACTTG+TGG | 0.568567 | 8.1:+67731464 | MS.gene23623:CDS |
| TGATGAAAAGCTCTTTGCAA+TGG | 0.579661 | 8.1:+67731677 | MS.gene23623:CDS |
| TTGATGGAAGGAGAAATTGC+TGG | 0.584407 | 8.1:+67731618 | MS.gene23623:CDS |
| AATGTGATCAGTTCCAACAC+TGG | 0.588992 | 8.1:-67730632 | None:intergenic |
| CAACCTGAATTCCGCGACGA+CGG | 0.589863 | 8.1:-67730669 | None:intergenic |
| CGTTGCTGATTGCTGTCAAG+AGG | 0.592140 | 8.1:+67730740 | MS.gene23623:CDS |
| CGAGAAAACTCCTCCAGCAC+CGG | 0.593259 | 8.1:-67730692 | None:intergenic |
| TGGATTAGGAAGTATTGGCA+TGG | 0.593545 | 8.1:+67731335 | MS.gene23623:CDS |
| GCAGCGCTACAGAATATGGC+GGG | 0.604474 | 8.1:-67730550 | None:intergenic |
| TGTTGCAGTGATAGGCCTGA+GGG | 0.610418 | 8.1:-67730490 | None:intergenic |
| GGTGACAACAAGGCTGAGCG+AGG | 0.616021 | 8.1:-67730608 | None:intergenic |
| AATGAGTTTGTGTGAACTTG+TGG | 0.617149 | 8.1:+67731749 | MS.gene23623:CDS |
| TGTGAACCTTGTATCCAAGA+GGG | 0.623359 | 8.1:-67730825 | None:intergenic |
| CAACACTGGAGGTGACAACA+AGG | 0.627680 | 8.1:-67730618 | None:intergenic |
| ATGTGAACCTTGTATCCAAG+AGG | 0.641365 | 8.1:-67730826 | None:intergenic |
| CTGAATGAATGCCGTCGTCG+CGG | 0.646790 | 8.1:+67730658 | MS.gene23623:CDS |
| TATCCAAGAGGGAAATCCCA+AGG | 0.655740 | 8.1:-67730814 | None:intergenic |
| GTGACAACAAGGCTGAGCGA+GGG | 0.665503 | 8.1:-67730607 | None:intergenic |
| TGCAGCGCTACAGAATATGG+CGG | 0.674749 | 8.1:-67730551 | None:intergenic |
| TTGTTGCAGTGATAGGCCTG+AGG | 0.677465 | 8.1:-67730491 | None:intergenic |
| GTTTGTGTGAACTTGTGGCA+GGG | 0.679026 | 8.1:+67731754 | MS.gene23623:CDS |
| GCTGATTGCTGTCAAGAGGA+AGG | 0.679407 | 8.1:+67730744 | MS.gene23623:CDS |
| TCGAAGGTGGAGAAGCATGT+TGG | 0.681312 | 8.1:-67730427 | None:intergenic |
| TGTCAAGAGGAAGGTGACGG+TGG | 0.685323 | 8.1:+67730753 | MS.gene23623:CDS |
| GTGATCAGTTCCAACACTGG+AGG | 0.687001 | 8.1:-67730629 | None:intergenic |
| TGCTGTCAAGAGGAAGGTGA+CGG | 0.689334 | 8.1:+67730750 | MS.gene23623:CDS |
| GGAGGATGTGGCTGATATGG+CGG | 0.694931 | 8.1:+67730714 | MS.gene23623:CDS |
| GGGAAGAAGGTTGAGAACGT+CGG | 0.695377 | 8.1:-67730587 | None:intergenic |
| TGGCGGATCGATATGTGAGG+AGG | 0.696654 | 8.1:+67730773 | MS.gene23623:CDS |
| CGGTGGCGGATCGATATGTG+AGG | 0.719773 | 8.1:+67730770 | MS.gene23623:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCAATTTCTCATGAA+TGG | - | chr8.1:67731077-67731096 | None:intergenic | 20.0% |
| !! | ATGAGAAATTGAAATTTCTT+TGG | + | chr8.1:67731080-67731099 | MS.gene23623:intron | 20.0% |
| !!! | AATTTTTTCCGATGTTAATT+TGG | - | chr8.1:67730929-67730948 | None:intergenic | 20.0% |
| ! | CTATAACATTGGAATAGAAA+GGG | - | chr8.1:67731437-67731456 | None:intergenic | 25.0% |
| ! | TAACCTATCCAAATTAACAT+CGG | + | chr8.1:67730918-67730937 | MS.gene23623:intron | 25.0% |
| ! | TCTATAACATTGGAATAGAA+AGG | - | chr8.1:67731438-67731457 | None:intergenic | 25.0% |
| ! | TTTATTGTAAATGTTGGAAG+AGG | + | chr8.1:67731561-67731580 | MS.gene23623:CDS | 25.0% |
| !! | AATCATATTGAAAGTGCATA+TGG | + | chr8.1:67731220-67731239 | MS.gene23623:intron | 25.0% |
| !!! | TTTTCACTGTTTTAGTTATC+AGG | + | chr8.1:67731294-67731313 | MS.gene23623:intron | 25.0% |
| ACAATTGATCAAGTGTTTGA+TGG | + | chr8.1:67731602-67731621 | MS.gene23623:CDS | 30.0% | |
| ACATGAAGTATATGTTGAAG+TGG | - | chr8.1:67731139-67731158 | None:intergenic | 30.0% | |
| AGTTGCAAGATCTATAACAT+TGG | - | chr8.1:67731448-67731467 | None:intergenic | 30.0% | |
| GAAGGGTTTATTGTAAATGT+TGG | + | chr8.1:67731555-67731574 | MS.gene23623:CDS | 30.0% | |
| ! | ATTGTTGGATTAGGAAGTAT+TGG | + | chr8.1:67731330-67731349 | MS.gene23623:CDS | 30.0% |
| ! | TTTCCGATGTTAATTTGGAT+AGG | - | chr8.1:67730924-67730943 | None:intergenic | 30.0% |
| ! | TTTTGGCATTAGGAAAAGAA+GGG | + | chr8.1:67731538-67731557 | MS.gene23623:CDS | 30.0% |
| !!! | AAGTGGTTTTTTTTTTCTGC+TGG | - | chr8.1:67731122-67731141 | None:intergenic | 30.0% |
| AACTTCACTGGACTAATTAG+TGG | - | chr8.1:67731807-67731826 | None:intergenic | 35.0% | |
| AATGAGTTTGTGTGAACTTG+TGG | + | chr8.1:67731749-67731768 | MS.gene23623:CDS | 35.0% | |
| ACTAATTAGTCCAGTGAAGT+TGG | + | chr8.1:67731806-67731825 | MS.gene23623:CDS | 35.0% | |
| ATTGTAAATGTTGGAAGAGG+TGG | + | chr8.1:67731564-67731583 | MS.gene23623:CDS | 35.0% | |
| TGATGAAAAGCTCTTTGCAA+TGG | + | chr8.1:67731677-67731696 | MS.gene23623:CDS | 35.0% | |
| TGTTTACTATGTGTCGTGTT+CGG | - | chr8.1:67731509-67731528 | None:intergenic | 35.0% | |
| TTGATCAAGTGTTTGATGGA+AGG | + | chr8.1:67731606-67731625 | MS.gene23623:CDS | 35.0% | |
| ! | AAGAGCTTTTCATCAACATG+AGG | - | chr8.1:67731672-67731691 | None:intergenic | 35.0% |
| ! | AGTAAACAACGATGTCCTTT+TGG | + | chr8.1:67731521-67731540 | MS.gene23623:CDS | 35.0% |
| ! | ATGTCTTTTGATGCTTAGAG+TGG | - | chr8.1:67731404-67731423 | None:intergenic | 35.0% |
| ! | CAAGAACAAGTACTTTTGGA+AGG | - | chr8.1:67730402-67730421 | None:intergenic | 35.0% |
| ! | CTTCTTTTCCTAATGCCAAA+AGG | - | chr8.1:67731539-67731558 | None:intergenic | 35.0% |
| ! | CTTTTGGCATTAGGAAAAGA+AGG | + | chr8.1:67731537-67731556 | MS.gene23623:CDS | 35.0% |
| ! | GAAGCGACAATTCTATGTTT+TGG | - | chr8.1:67731195-67731214 | None:intergenic | 35.0% |
| !! | AAGTACTTTTGGAAGGTCTT+TGG | - | chr8.1:67730395-67730414 | None:intergenic | 35.0% |
| !! | CTTCCAAAAGTACTTGTTCT+TGG | + | chr8.1:67730400-67730419 | MS.gene23623:CDS | 35.0% |
| AATGTGATCAGTTCCAACAC+TGG | - | chr8.1:67730635-67730654 | None:intergenic | 40.0% | |
| ACAGTAAAAGCTGCAGAATG+TGG | - | chr8.1:67731720-67731739 | None:intergenic | 40.0% | |
| ATATGCAGCGCTACAGAATA+TGG | - | chr8.1:67730557-67730576 | None:intergenic | 40.0% | |
| ATGTGAACCTTGTATCCAAG+AGG | - | chr8.1:67730829-67730848 | None:intergenic | 40.0% | |
| CTTCTACTTGCTTCTCTTCA+AGG | - | chr8.1:67730960-67730979 | None:intergenic | 40.0% | |
| GAATATTAGTGTCTCGCTAC+TGG | - | chr8.1:67731005-67731024 | None:intergenic | 40.0% | |
| GCTCTTTGCAATGGATAATG+TGG | + | chr8.1:67731686-67731705 | MS.gene23623:CDS | 40.0% | |
| GGATGAATTGTTGCAGTGAT+AGG | - | chr8.1:67730501-67730520 | None:intergenic | 40.0% | |
| TGTGAACCTTGTATCCAAGA+GGG | - | chr8.1:67730828-67730847 | None:intergenic | 40.0% | |
| TTGATGGAAGGAGAAATTGC+TGG | + | chr8.1:67731618-67731637 | MS.gene23623:CDS | 40.0% | |
| ! | AACGATGTCCTTTTGGCATT+AGG | + | chr8.1:67731528-67731547 | MS.gene23623:CDS | 40.0% |
| ! | AATATGGCGGGAATTGTTGA+TGG | - | chr8.1:67730541-67730560 | None:intergenic | 40.0% |
| ! | CGAGTTGGAATTGTTGGATT+AGG | + | chr8.1:67731321-67731340 | MS.gene23623:CDS | 40.0% |
| ! | CTTTTGATGCTTAGAGTGGT+AGG | - | chr8.1:67731400-67731419 | None:intergenic | 40.0% |
| ! | GGACCAAGAACAAGTACTTT+TGG | - | chr8.1:67730406-67730425 | None:intergenic | 40.0% |
| !! | TGGATTAGGAAGTATTGGCA+TGG | + | chr8.1:67731335-67731354 | MS.gene23623:CDS | 40.0% |
| !! | TGTTGATGGATTGTGGTTGT+GGG | - | chr8.1:67730527-67730546 | None:intergenic | 40.0% |
| !! | TTGTTGATGGATTGTGGTTG+TGG | - | chr8.1:67730528-67730547 | None:intergenic | 40.0% |
| ACTTGCTTCTCTTCAAGGTC+TGG | - | chr8.1:67730955-67730974 | None:intergenic | 45.0% | |
| AGAGTAGAGTGATTCGAAGG+TGG | - | chr8.1:67730443-67730462 | None:intergenic | 45.0% | |
| AGTTTGTGTGAACTTGTGGC+AGG | + | chr8.1:67731753-67731772 | MS.gene23623:CDS | 45.0% | |
| GCGCAACAAACATGCACTTA+AGG | + | chr8.1:67731265-67731284 | MS.gene23623:intron | 45.0% | |
| GGATTTCCCTCTTGGATACA+AGG | + | chr8.1:67730819-67730838 | MS.gene23623:CDS | 45.0% | |
| GTGAGAGTAGAGTGATTCGA+AGG | - | chr8.1:67730446-67730465 | None:intergenic | 45.0% | |
| GTTTGTGTGAACTTGTGGCA+GGG | + | chr8.1:67731754-67731773 | MS.gene23623:CDS | 45.0% | |
| TAGTTATCAGGCAAGCGAGT+TGG | + | chr8.1:67731306-67731325 | MS.gene23623:intron | 45.0% | |
| TATCCAAGAGGGAAATCCCA+AGG | - | chr8.1:67730817-67730836 | None:intergenic | 45.0% | |
| ! | ATGGATTGTGGTTGTGGGAA+AGG | - | chr8.1:67730522-67730541 | None:intergenic | 45.0% |
| !! | AGAAATTGCTGGTGCTGGTT+TGG | + | chr8.1:67731629-67731648 | MS.gene23623:CDS | 45.0% |
| !! | CGGGAATTGTTGATGGATTG+TGG | - | chr8.1:67730534-67730553 | None:intergenic | 45.0% |
| AACTTCTAGCGACGCACTTG+TGG | + | chr8.1:67731464-67731483 | MS.gene23623:CDS | 50.0% | |
| AGTGATAGGCCTGAGGGTTT+GGG | - | chr8.1:67730487-67730506 | None:intergenic | 50.0% | |
| ATCGATATGTGAGGAGGTGG+CGG | + | chr8.1:67730779-67730798 | MS.gene23623:CDS | 50.0% | |
| CAACACTGGAGGTGACAACA+AGG | - | chr8.1:67730621-67730640 | None:intergenic | 50.0% | |
| GAAGGAGAAATTGCTGGTGC+TGG | + | chr8.1:67731624-67731643 | MS.gene23623:CDS | 50.0% | |
| GATCCTTGGGATTTCCCTCT+TGG | + | chr8.1:67730811-67730830 | MS.gene23623:CDS | 50.0% | |
| GCTGATTGCTGTCAAGAGGA+AGG | + | chr8.1:67730744-67730763 | MS.gene23623:CDS | 50.0% | |
| GGGAAGAAGGTTGAGAACGT+CGG | - | chr8.1:67730590-67730609 | None:intergenic | 50.0% | |
| GTGATCAGTTCCAACACTGG+AGG | - | chr8.1:67730632-67730651 | None:intergenic | 50.0% | |
| GTTGAGAACGTCGGTAGTGA+TGG | - | chr8.1:67730581-67730600 | None:intergenic | 50.0% | |
| TCTCGCTACTGGTAAGAACG+AGG | - | chr8.1:67730994-67731013 | None:intergenic | 50.0% | |
| TGCAGCGCTACAGAATATGG+CGG | - | chr8.1:67730554-67730573 | None:intergenic | 50.0% | |
| TGCTGTCAAGAGGAAGGTGA+CGG | + | chr8.1:67730750-67730769 | MS.gene23623:CDS | 50.0% | |
| TGTTGCAGTGATAGGCCTGA+GGG | - | chr8.1:67730493-67730512 | None:intergenic | 50.0% | |
| TTCCTAAACCCCAAACCCTC+AGG | + | chr8.1:67730475-67730494 | MS.gene23623:CDS | 50.0% | |
| TTGTTGCAGTGATAGGCCTG+AGG | - | chr8.1:67730494-67730513 | None:intergenic | 50.0% | |
| ! | AAGGTGGAGAAGCATGTTGG+TGG | - | chr8.1:67730427-67730446 | None:intergenic | 50.0% |
| ! | AGGAGTTTTCTCGGAGGATG+TGG | + | chr8.1:67730702-67730721 | MS.gene23623:CDS | 50.0% |
| ! | CGTTGCTGATTGCTGTCAAG+AGG | + | chr8.1:67730740-67730759 | MS.gene23623:CDS | 50.0% |
| ! | CTTGTTGTCACCTCCAGTGT+TGG | + | chr8.1:67730619-67730638 | MS.gene23623:CDS | 50.0% |
| ! | GGCAAGCGAGTTGGAATTGT+TGG | + | chr8.1:67731315-67731334 | MS.gene23623:CDS | 50.0% |
| ! | TCGAAGGTGGAGAAGCATGT+TGG | - | chr8.1:67730430-67730449 | None:intergenic | 50.0% |
| CAACCTGAATTCCGCGACGA+CGG | - | chr8.1:67730672-67730691 | None:intergenic | 55.0% | |
| CAGTGATAGGCCTGAGGGTT+TGG | - | chr8.1:67730488-67730507 | None:intergenic | 55.0% | |
| CGAGAAAACTCCTCCAGCAC+CGG | - | chr8.1:67730695-67730714 | None:intergenic | 55.0% | |
| CGGATCGATATGTGAGGAGG+TGG | + | chr8.1:67730776-67730795 | MS.gene23623:CDS | 55.0% | |
| CTCGGAGGATGTGGCTGATA+TGG | + | chr8.1:67730711-67730730 | MS.gene23623:CDS | 55.0% | |
| CTGAATGAATGCCGTCGTCG+CGG | + | chr8.1:67730658-67730677 | MS.gene23623:CDS | 55.0% | |
| GCAGCGCTACAGAATATGGC+GGG | - | chr8.1:67730553-67730572 | None:intergenic | 55.0% | |
| GCGGGAACGTTCTGATCCTT+GGG | + | chr8.1:67730798-67730817 | MS.gene23623:CDS | 55.0% | |
| GGAGGATGTGGCTGATATGG+CGG | + | chr8.1:67730714-67730733 | MS.gene23623:CDS | 55.0% | |
| GTGACAACAAGGCTGAGCGA+GGG | - | chr8.1:67730610-67730629 | None:intergenic | 55.0% | |
| GTGATAGGCCTGAGGGTTTG+GGG | - | chr8.1:67730486-67730505 | None:intergenic | 55.0% | |
| TCGATATGTGAGGAGGTGGC+GGG | + | chr8.1:67730780-67730799 | MS.gene23623:CDS | 55.0% | |
| ! | TGCTGGAGGAGTTTTCTCGG+AGG | + | chr8.1:67730696-67730715 | MS.gene23623:CDS | 55.0% |
| ! | TGGCGGATCGATATGTGAGG+AGG | + | chr8.1:67730773-67730792 | MS.gene23623:CDS | 55.0% |
| ! | TGTCAAGAGGAAGGTGACGG+TGG | + | chr8.1:67730753-67730772 | MS.gene23623:CDS | 55.0% |
| !! | CGGTGCTGGAGGAGTTTTCT+CGG | + | chr8.1:67730693-67730712 | MS.gene23623:CDS | 55.0% |
| ATGCCGTCGTCGCGGAATTC+AGG | + | chr8.1:67730666-67730685 | MS.gene23623:CDS | 60.0% | |
| CAAGGCTGAGCGAGGGAAGA+AGG | - | chr8.1:67730603-67730622 | None:intergenic | 60.0% | |
| CGCGACGACGGCATTCATTC+AGG | - | chr8.1:67730660-67730679 | None:intergenic | 60.0% | |
| GGCGGGAACGTTCTGATCCT+TGG | + | chr8.1:67730797-67730816 | MS.gene23623:CDS | 60.0% | |
| GGTGACAACAAGGCTGAGCG+AGG | - | chr8.1:67730611-67730630 | None:intergenic | 60.0% | |
| ! | CAAGAGGAAGGTGACGGTGG+CGG | + | chr8.1:67730756-67730775 | MS.gene23623:CDS | 60.0% |
| ! | GGCCTGAGGGTTTGGGGTTT+AGG | - | chr8.1:67730480-67730499 | None:intergenic | 60.0% |
| !! | ATTCAGGTTGCCGGTGCTGG+AGG | + | chr8.1:67730682-67730701 | MS.gene23623:CDS | 60.0% |
| !! | CGGTGGCGGATCGATATGTG+AGG | + | chr8.1:67730770-67730789 | MS.gene23623:CDS | 60.0% |
| !! | CGTCGCGGAATTCAGGTTGC+CGG | + | chr8.1:67730673-67730692 | MS.gene23623:CDS | 60.0% |
| !! | GGAATTCAGGTTGCCGGTGC+TGG | + | chr8.1:67730679-67730698 | MS.gene23623:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 67730388 | 67731836 | 67730388 | ID=MS.gene23623 |
| chr8.1 | mRNA | 67730388 | 67731836 | 67730388 | ID=MS.gene23623.t1;Parent=MS.gene23623 |
| chr8.1 | exon | 67730388 | 67730840 | 67730388 | ID=MS.gene23623.t1.exon1;Parent=MS.gene23623.t1 |
| chr8.1 | CDS | 67730388 | 67730840 | 67730388 | ID=cds.MS.gene23623.t1;Parent=MS.gene23623.t1 |
| chr8.1 | exon | 67731309 | 67731836 | 67731309 | ID=MS.gene23623.t1.exon2;Parent=MS.gene23623.t1 |
| chr8.1 | CDS | 67731309 | 67731836 | 67731309 | ID=cds.MS.gene23623.t1;Parent=MS.gene23623.t1 |
| Gene Sequence |
| Protein sequence |
