AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068880.t1 MTR_5g010500 95.979 373 15 0 1 373 130 502 0.0 756
MS.gene068880.t1 MTR_8g031470 64.550 378 125 3 1 371 118 493 0.0 526
MS.gene068880.t1 MTR_8g031450 62.133 375 133 3 1 369 137 508 2.26e-180 511
MS.gene068880.t1 MTR_0014s0440 63.298 376 128 3 2 370 119 491 3.39e-178 504
MS.gene068880.t1 MTR_0014s0440 63.298 376 128 3 2 370 130 502 7.31e-178 504
MS.gene068880.t1 MTR_8g031290 56.640 369 150 3 1 362 123 488 2.68e-157 451
MS.gene068880.t1 MTR_8g031470 57.143 378 116 4 1 371 118 456 3.58e-157 450
MS.gene068880.t1 MTR_7g076860 53.448 348 152 3 2 342 52 396 4.29e-144 414
MS.gene068880.t1 MTR_7g076890 52.436 349 155 4 1 342 82 426 6.50e-142 410
MS.gene068880.t1 MTR_3g464000 48.680 341 164 7 4 340 132 465 3.20e-111 333
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068880.t1 AT5G23850 62.667 375 130 3 2 369 163 534 9.45e-177 503
MS.gene068880.t1 AT3G48980 60.372 376 139 3 2 370 160 532 8.91e-175 498
MS.gene068880.t1 AT3G48980 60.372 376 139 3 2 370 166 538 1.30e-174 497
MS.gene068880.t1 AT1G63420 61.039 385 133 4 1 370 193 575 4.26e-173 494
MS.gene068880.t1 AT2G45830 57.333 375 150 3 1 368 1 372 1.38e-164 466
MS.gene068880.t1 AT2G45830 57.333 375 150 3 1 368 1 372 1.38e-164 466
MS.gene068880.t1 AT2G45830 57.333 375 150 3 1 368 1 372 1.38e-164 466
MS.gene068880.t1 AT2G45830 57.333 375 150 3 1 368 1 372 1.38e-164 466
MS.gene068880.t1 AT3G61270 57.029 377 153 3 1 371 1 374 1.58e-164 465
MS.gene068880.t1 AT3G61270 57.029 377 153 3 1 371 120 493 2.16e-163 467
MS.gene068880.t1 AT2G45830 57.181 376 151 3 1 369 142 514 3.18e-163 468
MS.gene068880.t1 AT2G45830 57.181 376 151 3 1 369 142 514 3.18e-163 468
MS.gene068880.t1 AT3G61280 52.381 378 168 3 2 369 155 530 1.46e-144 421
MS.gene068880.t1 AT2G45840 52.105 380 164 3 2 370 143 515 1.41e-143 417
MS.gene068880.t1 AT3G61290 51.181 381 173 3 2 371 68 446 3.43e-139 404
MS.gene068880.t1 AT1G63420 64.794 267 81 3 1 256 193 457 3.52e-123 363
MS.gene068880.t1 AT1G07220 48.246 342 166 7 2 339 139 473 2.88e-114 342
MS.gene068880.t1 AT3G61280 53.500 200 82 2 2 192 155 352 6.37e-71 226

Find 94 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGAACCTTATGCTTAT+TGG 0.143284 2.1:+46648398 MS.gene068880:CDS
TGCAACATTATTGGCCTATA+AGG 0.152325 2.1:+46648905 MS.gene068880:CDS
TACAGCCATTGCAACATTAT+TGG 0.224609 2.1:+46648896 MS.gene068880:CDS
CATTTGTCAGTGCCCCTTAT+AGG 0.272815 2.1:-46648919 None:intergenic
GCAACATTATTGGCCTATAA+GGG 0.291368 2.1:+46648906 MS.gene068880:CDS
ACTTGACAGGTACAGGAAAT+TGG 0.312878 2.1:+46649274 MS.gene068880:intron
TTTCCCTGACTGGTCCTTCT+GGG 0.316015 2.1:+46647769 MS.gene068880:CDS
CCCAATCCCATGGGCACAAC+AGG 0.323690 2.1:-46647695 None:intergenic
CACAGCTCCACGGCTCCTTC+AGG 0.333183 2.1:-46649409 None:intergenic
CCAATCAACTGCATGTTTGA+TGG 0.347036 2.1:-46648947 None:intergenic
AGGGGAACAAAAGAGTAAAA+TGG 0.354181 2.1:+46648371 MS.gene068880:CDS
AGTCGTGTTGCGGCAGTATA+AGG 0.359590 2.1:-46648430 None:intergenic
TGGAATATTCATTTAGCAAA+TGG 0.360170 2.1:-46649360 None:intergenic
CCATCAAACATGCAGTTGAT+TGG 0.367325 2.1:+46648947 MS.gene068880:CDS
GCCTGTTGTGCCCATGGGAT+TGG 0.369989 2.1:+46647694 MS.gene068880:CDS
CATCAAACATGCAGTTGATT+GGG 0.374429 2.1:+46648948 MS.gene068880:CDS
CCTGTTGTGCCCATGGGATT+GGG 0.379519 2.1:+46647695 MS.gene068880:CDS
TTATGAGTGAATCCATGGTT+AGG 0.390989 2.1:+46649479 MS.gene068880:CDS
AGAGGTGGGAAGATGAATAT+TGG 0.400013 2.1:+46649602 MS.gene068880:CDS
TGGCTCAAACTTGAGAAGCT+TGG 0.409168 2.1:-46649380 None:intergenic
TTTCCTTTCCAATAAGCATA+AGG 0.416388 2.1:-46648406 None:intergenic
CTAAGTGATGTGGGATCAAA+TGG 0.418582 2.1:-46649538 None:intergenic
CTGACTGGTCCTTCTGGGGT+TGG 0.423962 2.1:+46647774 MS.gene068880:CDS
CTTGTGCAAGCCATGGTCTC+CGG 0.424836 2.1:-46649433 None:intergenic
AGATACAAAGTTTATATTGA+AGG 0.435834 2.1:+46648778 MS.gene068880:intron
CCCTGGTAAAATTCCAGACT+TGG 0.439877 2.1:+46647646 MS.gene068880:CDS
TCTGTACCTGCGTAAATAAA+CGG 0.459324 2.1:-46648498 None:intergenic
TCAAACATGAGTTCCAAGTC+TGG 0.465096 2.1:-46647659 None:intergenic
GGATCAAATGGAGGAGGCAA+GGG 0.468934 2.1:-46649526 None:intergenic
ACGGCTCCTTCAGGAACTCT+TGG 0.477411 2.1:-46649400 None:intergenic
TATGAGTGAATCCATGGTTA+GGG 0.480560 2.1:+46649480 MS.gene068880:CDS
GTACAGGAAATTGGTAAAGC+CGG 0.483609 2.1:+46649283 MS.gene068880:CDS
AATGGAGGAGGCAAGGGGCA+AGG 0.487872 2.1:-46649520 None:intergenic
CAACCCCAGAAGGACCAGTC+AGG 0.488262 2.1:-46647773 None:intergenic
ATGGAGGAGGCAAGGGGCAA+GGG 0.489670 2.1:-46649519 None:intergenic
GAACCTTATGCTTATTGGAA+AGG 0.492867 2.1:+46648403 MS.gene068880:CDS
ATGTTTCAACCGCACAGGAT+TGG 0.493210 2.1:+46648470 MS.gene068880:CDS
CTGAGATTAATATAAGCCCT+TGG 0.494505 2.1:+46648323 MS.gene068880:CDS
CATTTGATCCCACATCACTT+AGG 0.497579 2.1:+46649539 MS.gene068880:CDS
TGGCAGACCAATGTACATAT+AGG 0.498282 2.1:+46648646 MS.gene068880:CDS
AGGTGGTGGGCCCAATCCCA+TGG 0.502835 2.1:-46647705 None:intergenic
TTCTTGAATAAACTTGCTCC+CGG 0.505080 2.1:-46649302 None:intergenic
TTGTAATGTTTCAACCGCAC+AGG 0.505206 2.1:+46648465 MS.gene068880:CDS
GAAATTTATGAGTGAATCCA+TGG 0.508746 2.1:+46649474 MS.gene068880:CDS
TTGTGCAAGCCATGGTCTCC+GGG 0.511415 2.1:-46649432 None:intergenic
CGGTTGAAACATTACAATTG+AGG 0.511958 2.1:-46648459 None:intergenic
TACAGGAAATTGGTAAAGCC+GGG 0.515192 2.1:+46649284 MS.gene068880:CDS
GAGGCTTCACTAATAGTGTA+GGG 0.515936 2.1:-46648846 None:intergenic
AGGAGCCGTGGAGCTGTGCC+CGG 0.517508 2.1:+46649414 MS.gene068880:CDS
GGAGCTGTGCCCGGAGACCA+TGG 0.520376 2.1:+46649423 MS.gene068880:CDS
CGAGGCTTCACTAATAGTGT+AGG 0.521509 2.1:-46648847 None:intergenic
CATCTTCCCACCTCTCAACT+CGG 0.523375 2.1:-46649594 None:intergenic
GGGATCAAATGGAGGAGGCA+AGG 0.532099 2.1:-46649527 None:intergenic
TTCCCTGACTGGTCCTTCTG+GGG 0.537571 2.1:+46647770 MS.gene068880:CDS
AGGATTCAATCACTCAAACT+TGG 0.539657 2.1:+46648626 MS.gene068880:CDS
TGAGATTAATATAAGCCCTT+GGG 0.543242 2.1:+46648324 MS.gene068880:CDS
TGATAAGCCTGTTGTGCCCA+TGG 0.553336 2.1:+46647688 MS.gene068880:CDS
TAATAGTGTAGGGGAATCAC+AGG 0.553816 2.1:-46648836 None:intergenic
GGTGGAGAAAGCAAAGAAAA+CGG 0.555442 2.1:+46647502 MS.gene068880:CDS
TAATCAACCGAGTTGAGAGG+TGG 0.563561 2.1:+46649587 MS.gene068880:CDS
TGTAGAAGGTTCCCTAACCA+TGG 0.568492 2.1:-46649491 None:intergenic
GGAACTACCTATATGTACAT+TGG 0.572220 2.1:-46648653 None:intergenic
AAGAGTTCCTGAAGGAGCCG+TGG 0.572482 2.1:+46649402 MS.gene068880:CDS
TCCTTCAGAAGATGTTCCCA+AGG 0.573383 2.1:-46648340 None:intergenic
CAACATTATTGGCCTATAAG+GGG 0.581113 2.1:+46648907 MS.gene068880:CDS
AATAATGTTGCAATGGCTGT+AGG 0.584450 2.1:-46648894 None:intergenic
ATCAAACATGCAGTTGATTG+GGG 0.586497 2.1:+46648949 MS.gene068880:CDS
CCCTTGGGAACATCTTCTGA+AGG 0.592442 2.1:+46648339 MS.gene068880:CDS
GGTCTCCGGGCACAGCTCCA+CGG 0.592499 2.1:-46649419 None:intergenic
TGGATTAAAGAGTCTGAACA+AGG 0.592715 2.1:+46648606 MS.gene068880:CDS
GGTGGTGGGCCCAATCCCAT+GGG 0.595071 2.1:-46647704 None:intergenic
ATAGGCCAATAATGTTGCAA+TGG 0.599822 2.1:-46648901 None:intergenic
ATTTAATCAACCGAGTTGAG+AGG 0.603531 2.1:+46649584 MS.gene068880:CDS
TTGGTTACTGTGCTGATCGG+TGG 0.603838 2.1:+46647732 MS.gene068880:CDS
AACCCCAGAAGGACCAGTCA+GGG 0.609191 2.1:-46647772 None:intergenic
GATCAAATGGAGGAGGCAAG+GGG 0.622941 2.1:-46649525 None:intergenic
GAGGAAGTCTAGTCGTGTTG+CGG 0.623086 2.1:-46648440 None:intergenic
GATGTGGGATCAAATGGAGG+AGG 0.623679 2.1:-46649532 None:intergenic
CTGTGCTGATCGGTGGACAC+AGG 0.626551 2.1:+46647739 MS.gene068880:CDS
ATATGATCTTGTGCAAGCCA+TGG 0.636615 2.1:-46649440 None:intergenic
TTTGAGCCAAGAGTTCCTGA+AGG 0.639566 2.1:+46649394 MS.gene068880:CDS
AATCAACCGAGTTGAGAGGT+GGG 0.639972 2.1:+46649588 MS.gene068880:CDS
GAAACTCCGTTTATTTACGC+AGG 0.643555 2.1:+46648492 MS.gene068880:CDS
CCTTCAGAAGATGTTCCCAA+GGG 0.643671 2.1:-46648339 None:intergenic
AAGAACATACCAACCCCAGA+AGG 0.645283 2.1:-46647783 None:intergenic
GATAAGCCTGTTGTGCCCAT+GGG 0.662497 2.1:+46647689 MS.gene068880:CDS
TATTCAAGAAGAGCTCAACA+TGG 0.666732 2.1:+46649315 MS.gene068880:CDS
GTGAAGAAATCGTAGTATCG+AGG 0.668956 2.1:-46648865 None:intergenic
AGTGATGTGGGATCAAATGG+AGG 0.680524 2.1:-46649535 None:intergenic
AGGCTTCACTAATAGTGTAG+GGG 0.685668 2.1:-46648845 None:intergenic
TTTATATTGAAGGATACGCG+TGG 0.686560 2.1:+46648788 MS.gene068880:CDS
TTGCACAAGATCATATTCAG+TGG 0.688665 2.1:+46649447 MS.gene068880:CDS
CAATTACTGAGAAAGTACCC+TGG 0.713086 2.1:+46647629 MS.gene068880:CDS
ACGGAGTTTCCAATCCTGTG+CGG 0.723022 2.1:-46648479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GACATATTTTATATACTTTA+TGG + chr2.1:46648183-46648202 MS.gene068880:intron 15.0%
!! AGATACAAAGTTTATATTGA+AGG + chr2.1:46648778-46648797 MS.gene068880:intron 20.0%
!! ATCCAAATAACATAAAAATG+GGG - chr2.1:46647871-46647890 None:intergenic 20.0%
!! CTAAATTGAAGAGATAATAA+TGG - chr2.1:46648039-46648058 None:intergenic 20.0%
!! GATCCAAATAACATAAAAAT+GGG - chr2.1:46647872-46647891 None:intergenic 20.0%
!! TACATTAATCAACAACTATA+TGG - chr2.1:46647894-46647913 None:intergenic 20.0%
!! TAGTTTAAGTACTAAATTCA+TGG + chr2.1:46648256-46648275 MS.gene068880:intron 20.0%
!! TTATTCAATAACTAACTAAC+TGG - chr2.1:46648003-46648022 None:intergenic 20.0%
!!! AAATGTACATGATGAATTTT+GGG - chr2.1:46648717-46648736 None:intergenic 20.0%
!!! ATATAGTTGTTGATTAATGT+AGG + chr2.1:46647893-46647912 MS.gene068880:intron 20.0%
!!! ATATTTTGTCACAAATATGT+AGG + chr2.1:46648581-46648600 MS.gene068880:intron 20.0%
!!! TAAATGTACATGATGAATTT+TGG - chr2.1:46648718-46648737 None:intergenic 20.0%
! AAACTTTGTATCTGATATCA+AGG - chr2.1:46648771-46648790 None:intergenic 25.0%
! ATAAAAAATCCTAAGTGATG+TGG - chr2.1:46649551-46649570 None:intergenic 25.0%
! GGATCCAAATAACATAAAAA+TGG - chr2.1:46647873-46647892 None:intergenic 25.0%
! TAAAAAATCCTAAGTGATGT+GGG - chr2.1:46649550-46649569 None:intergenic 25.0%
! TAGTAATTCATGAAATGCAA+TGG + chr2.1:46648287-46648306 MS.gene068880:intron 25.0%
! TGGAATATTCATTTAGCAAA+TGG - chr2.1:46649363-46649382 None:intergenic 25.0%
!! ATATGTGATCTGAGATTAAA+TGG - chr2.1:46648677-46648696 None:intergenic 25.0%
!! CTTCTGAAGGATATAAAAAA+GGG + chr2.1:46648352-46648371 MS.gene068880:CDS 25.0%
!! TCTTCTGAAGGATATAAAAA+AGG + chr2.1:46648351-46648370 MS.gene068880:CDS 25.0%
!! TTCTGAAGGATATAAAAAAG+GGG + chr2.1:46648353-46648372 MS.gene068880:CDS 25.0%
!! TTTAAGACAAATGAATGACA+AGG - chr2.1:46649028-46649047 None:intergenic 25.0%
!!! AAATGCAATGGTTTTATTTC+AGG + chr2.1:46648299-46648318 MS.gene068880:intron 25.0%
!!! AATGCAATGGTTTTATTTCA+GGG + chr2.1:46648300-46648319 MS.gene068880:intron 25.0%
!!! ATCTTAGTCAAATGTTTTTG+AGG + chr2.1:46649121-46649140 MS.gene068880:intron 25.0%
AGTAGTAAAGGTTTAAATCG+TGG + chr2.1:46649076-46649095 MS.gene068880:intron 30.0%
GAAATTTATGAGTGAATCCA+TGG + chr2.1:46649474-46649493 MS.gene068880:CDS 30.0%
GTGGTTATGATATTATATCG+CGG + chr2.1:46649095-46649114 MS.gene068880:intron 30.0%
TCATTGTCATTCAAAGTTTG+TGG + chr2.1:46647916-46647935 MS.gene068880:intron 30.0%
TGAGATTAATATAAGCCCTT+GGG + chr2.1:46648324-46648343 MS.gene068880:CDS 30.0%
TTGTCACAAATATGTAGGAT+TGG + chr2.1:46648586-46648605 MS.gene068880:intron 30.0%
TTTCCTTTCCAATAAGCATA+AGG - chr2.1:46648409-46648428 None:intergenic 30.0%
!! AATTGTTGCTTCTAAGATGT+AGG - chr2.1:46648158-46648177 None:intergenic 30.0%
!! ATTGTTGCTTCTAAGATGTA+GGG - chr2.1:46648157-46648176 None:intergenic 30.0%
AATAATGTTGCAATGGCTGT+AGG - chr2.1:46648897-46648916 None:intergenic 35.0%
ACAGAGAACCTTATGCTTAT+TGG + chr2.1:46648398-46648417 MS.gene068880:CDS 35.0%
AGGATTCAATCACTCAAACT+TGG + chr2.1:46648626-46648645 MS.gene068880:CDS 35.0%
AGGGGAACAAAAGAGTAAAA+TGG + chr2.1:46648371-46648390 MS.gene068880:CDS 35.0%
ATAGGCCAATAATGTTGCAA+TGG - chr2.1:46648904-46648923 None:intergenic 35.0%
ATCAAACATGCAGTTGATTG+GGG + chr2.1:46648949-46648968 MS.gene068880:CDS 35.0%
ATGCTTCTTGACAGTAGTAA+AGG + chr2.1:46649064-46649083 MS.gene068880:intron 35.0%
CAACCTCAATTGTAATTGCA+AGG + chr2.1:46649144-46649163 MS.gene068880:intron 35.0%
CATCAAACATGCAGTTGATT+GGG + chr2.1:46648948-46648967 MS.gene068880:CDS 35.0%
CGGTTGAAACATTACAATTG+AGG - chr2.1:46648462-46648481 None:intergenic 35.0%
CTGAGATTAATATAAGCCCT+TGG + chr2.1:46648323-46648342 MS.gene068880:CDS 35.0%
GAACCTTATGCTTATTGGAA+AGG + chr2.1:46648403-46648422 MS.gene068880:CDS 35.0%
GATGTAGGGAACAAAATTGA+CGG - chr2.1:46648143-46648162 None:intergenic 35.0%
GGAACTACCTATATGTACAT+TGG - chr2.1:46648656-46648675 None:intergenic 35.0%
TACAGCCATTGCAACATTAT+TGG + chr2.1:46648896-46648915 MS.gene068880:CDS 35.0%
TATGAGTGAATCCATGGTTA+GGG + chr2.1:46649480-46649499 MS.gene068880:CDS 35.0%
TATTCAAGAAGAGCTCAACA+TGG + chr2.1:46649315-46649334 MS.gene068880:CDS 35.0%
TCTGTACCTGCGTAAATAAA+CGG - chr2.1:46648501-46648520 None:intergenic 35.0%
TGGATTAAAGAGTCTGAACA+AGG + chr2.1:46648606-46648625 MS.gene068880:CDS 35.0%
TTATGAGTGAATCCATGGTT+AGG + chr2.1:46649479-46649498 MS.gene068880:CDS 35.0%
TTGCACAAGATCATATTCAG+TGG + chr2.1:46649447-46649466 MS.gene068880:CDS 35.0%
TTTATATTGAAGGATACGCG+TGG + chr2.1:46648788-46648807 MS.gene068880:CDS 35.0%
! ATTTAATCAACCGAGTTGAG+AGG + chr2.1:46649584-46649603 MS.gene068880:CDS 35.0%
! CAACATTATTGGCCTATAAG+GGG + chr2.1:46648907-46648926 MS.gene068880:CDS 35.0%
! GCAACATTATTGGCCTATAA+GGG + chr2.1:46648906-46648925 MS.gene068880:CDS 35.0%
! TGCAACATTATTGGCCTATA+AGG + chr2.1:46648905-46648924 MS.gene068880:CDS 35.0%
! TGGTGGTGAAAAATGGAAAA+GGG + chr2.1:46647537-46647556 MS.gene068880:CDS 35.0%
! TTCTTGAATAAACTTGCTCC+CGG - chr2.1:46649305-46649324 None:intergenic 35.0%
!! GGCCCCATTTTTATGTTATT+TGG + chr2.1:46647866-46647885 MS.gene068880:intron 35.0%
!! TTGGTGGTGAAAAATGGAAA+AGG + chr2.1:46647536-46647555 MS.gene068880:CDS 35.0%
!! TTTAGGTTGGTGGTGAAAAA+TGG + chr2.1:46647530-46647549 MS.gene068880:CDS 35.0%
!!! TTTTTGGTTACTGTGCTGAT+CGG + chr2.1:46647729-46647748 MS.gene068880:CDS 35.0%
ACACAGGCTCACTAAATCTT+AGG - chr2.1:46649174-46649193 None:intergenic 40.0%
ACTTGACAGGTACAGGAAAT+TGG + chr2.1:46649274-46649293 MS.gene068880:intron 40.0%
AGAGGTGGGAAGATGAATAT+TGG + chr2.1:46649602-46649621 MS.gene068880:CDS 40.0%
AGATTTAGTGAGCCTGTGTT+TGG + chr2.1:46649175-46649194 MS.gene068880:intron 40.0%
AGGCTTCACTAATAGTGTAG+GGG - chr2.1:46648848-46648867 None:intergenic 40.0%
AGTAACCAAAAACAGGTGGT+GGG - chr2.1:46647721-46647740 None:intergenic 40.0%
ATATGATCTTGTGCAAGCCA+TGG - chr2.1:46649443-46649462 None:intergenic 40.0%
CATTTGATCCCACATCACTT+AGG + chr2.1:46649539-46649558 MS.gene068880:CDS 40.0%
CCAATCAACTGCATGTTTGA+TGG - chr2.1:46648950-46648969 None:intergenic 40.0%
CCATCAAACATGCAGTTGAT+TGG + chr2.1:46648947-46648966 MS.gene068880:CDS 40.0%
CTAAGTGATGTGGGATCAAA+TGG - chr2.1:46649541-46649560 None:intergenic 40.0%
CTCAATTGTAATTGCAAGGC+AGG + chr2.1:46649148-46649167 MS.gene068880:intron 40.0%
CTGCCTTGCAATTACAATTG+AGG - chr2.1:46649150-46649169 None:intergenic 40.0%
GAAACTCCGTTTATTTACGC+AGG + chr2.1:46648492-46648511 MS.gene068880:CDS 40.0%
GAATATCGAAAGAGATGCGA+TGG - chr2.1:46649006-46649025 None:intergenic 40.0%
GAGGCTTCACTAATAGTGTA+GGG - chr2.1:46648849-46648868 None:intergenic 40.0%
GCAGGTACAGACATATCTAA+AGG + chr2.1:46648510-46648529 MS.gene068880:intron 40.0%
GGTGGAGAAAGCAAAGAAAA+CGG + chr2.1:46647502-46647521 MS.gene068880:CDS 40.0%
GTACAGGAAATTGGTAAAGC+CGG + chr2.1:46649283-46649302 MS.gene068880:CDS 40.0%
GTGAAGAAATCGTAGTATCG+AGG - chr2.1:46648868-46648887 None:intergenic 40.0%
TAATAGTGTAGGGGAATCAC+AGG - chr2.1:46648839-46648858 None:intergenic 40.0%
TAATTGCAGAATCCCCCAAA+CGG - chr2.1:46647615-46647634 None:intergenic 40.0%
TACAGGAAATTGGTAAAGCC+GGG + chr2.1:46649284-46649303 MS.gene068880:CDS 40.0%
TCAAACATGAGTTCCAAGTC+TGG - chr2.1:46647662-46647681 None:intergenic 40.0%
TCAGCACAGTAACCAAAAAC+AGG - chr2.1:46647728-46647747 None:intergenic 40.0%
TGGCAGACCAATGTACATAT+AGG + chr2.1:46648646-46648665 MS.gene068880:CDS 40.0%
TGTACCTGTCAAGTTAGTAG+CGG - chr2.1:46649268-46649287 None:intergenic 40.0%
TTGTAATGTTTCAACCGCAC+AGG + chr2.1:46648465-46648484 MS.gene068880:CDS 40.0%
! ACGTGATGTTTTCACCGTTT+GGG + chr2.1:46647598-46647617 MS.gene068880:CDS 40.0%
! CAAAGAAAACGGCGCATTTT+AGG + chr2.1:46647513-46647532 MS.gene068880:CDS 40.0%
! CAAGAAGCATACACGGTATA+TGG - chr2.1:46649054-46649073 None:intergenic 40.0%
! CTACTGTCAAGAAGCATACA+CGG - chr2.1:46649061-46649080 None:intergenic 40.0%
! TCGTACCTTTGTTATGTCGA+CGG + chr2.1:46647976-46647995 MS.gene068880:intron 40.0%
!! CAATTACTGAGAAAGTACCC+TGG + chr2.1:46647629-46647648 MS.gene068880:CDS 40.0%
!! CCAAGTCTGGAATTTTACCA+GGG - chr2.1:46647649-46647668 None:intergenic 40.0%
!! TCCAAGTCTGGAATTTTACC+AGG - chr2.1:46647650-46647669 None:intergenic 40.0%
AAGAACATACCAACCCCAGA+AGG - chr2.1:46647786-46647805 None:intergenic 45.0%
AGTGATGTGGGATCAAATGG+AGG - chr2.1:46649538-46649557 None:intergenic 45.0%
ATGTTTCAACCGCACAGGAT+TGG + chr2.1:46648470-46648489 MS.gene068880:CDS 45.0%
CAGTAACCAAAAACAGGTGG+TGG - chr2.1:46647722-46647741 None:intergenic 45.0%
CATTTGTCAGTGCCCCTTAT+AGG - chr2.1:46648922-46648941 None:intergenic 45.0%
CCCTGGTAAAATTCCAGACT+TGG + chr2.1:46647646-46647665 MS.gene068880:CDS 45.0%
CCTTCAGAAGATGTTCCCAA+GGG - chr2.1:46648342-46648361 None:intergenic 45.0%
CGAGGCTTCACTAATAGTGT+AGG - chr2.1:46648850-46648869 None:intergenic 45.0%
GCACAGTAACCAAAAACAGG+TGG - chr2.1:46647725-46647744 None:intergenic 45.0%
GCTACTAACTTGACAGGTAC+AGG + chr2.1:46649267-46649286 MS.gene068880:intron 45.0%
TAATTCCCGTGAAGCATGCT+TGG + chr2.1:46647845-46647864 MS.gene068880:intron 45.0%
TCCTTCAGAAGATGTTCCCA+AGG - chr2.1:46648343-46648362 None:intergenic 45.0%
TGGCTCAAACTTGAGAAGCT+TGG - chr2.1:46649383-46649402 None:intergenic 45.0%
TGTACCGCTACTAACTTGAC+AGG + chr2.1:46649261-46649280 MS.gene068880:intron 45.0%
TGTAGAAGGTTCCCTAACCA+TGG - chr2.1:46649494-46649513 None:intergenic 45.0%
TTTGAGCCAAGAGTTCCTGA+AGG + chr2.1:46649394-46649413 MS.gene068880:CDS 45.0%
! AATCAACCGAGTTGAGAGGT+GGG + chr2.1:46649588-46649607 MS.gene068880:CDS 45.0%
! AGGACATTGTTTTCCCTGAC+TGG + chr2.1:46647759-46647778 MS.gene068880:CDS 45.0%
! CACGTGATGTTTTCACCGTT+TGG + chr2.1:46647597-46647616 MS.gene068880:CDS 45.0%
! CGTGATGTTTTCACCGTTTG+GGG + chr2.1:46647599-46647618 MS.gene068880:CDS 45.0%
! GTGATGTTTTCACCGTTTGG+GGG + chr2.1:46647600-46647619 MS.gene068880:CDS 45.0%
! TAATCAACCGAGTTGAGAGG+TGG + chr2.1:46649587-46649606 MS.gene068880:CDS 45.0%
!! GAAAACGGCGCATTTTAGGT+TGG + chr2.1:46647517-46647536 MS.gene068880:CDS 45.0%
!! TAAACTATATAAATATAATA+AGG - chr2.1:46648212-46648231 None:intergenic 5.0%
ACGGAGTTTCCAATCCTGTG+CGG - chr2.1:46648482-46648501 None:intergenic 50.0%
AGTCGTGTTGCGGCAGTATA+AGG - chr2.1:46648433-46648452 None:intergenic 50.0%
CATCTTCCCACCTCTCAACT+CGG - chr2.1:46649597-46649616 None:intergenic 50.0%
CATGATCAATGACGCGACCA+GGG - chr2.1:46649206-46649225 None:intergenic 50.0%
CCCTTGGGAACATCTTCTGA+AGG + chr2.1:46648339-46648358 MS.gene068880:CDS 50.0%
CTGGACCGTCGACATAACAA+AGG - chr2.1:46647984-46648003 None:intergenic 50.0%
GAGGAAGTCTAGTCGTGTTG+CGG - chr2.1:46648443-46648462 None:intergenic 50.0%
GATAAGCCTGTTGTGCCCAT+GGG + chr2.1:46647689-46647708 MS.gene068880:CDS 50.0%
GATCAAATGGAGGAGGCAAG+GGG - chr2.1:46649528-46649547 None:intergenic 50.0%
GATGTGGGATCAAATGGAGG+AGG - chr2.1:46649535-46649554 None:intergenic 50.0%
GGATCAAATGGAGGAGGCAA+GGG - chr2.1:46649529-46649548 None:intergenic 50.0%
TAGTGAGCCTGTGTTTGGAC+CGG + chr2.1:46649180-46649199 MS.gene068880:intron 50.0%
TGATAAGCCTGTTGTGCCCA+TGG + chr2.1:46647688-46647707 MS.gene068880:CDS 50.0%
! GGGCAAGGGTCTTTTGTAGA+AGG - chr2.1:46649508-46649527 None:intergenic 50.0%
! TTGGTTACTGTGCTGATCGG+TGG + chr2.1:46647732-46647751 MS.gene068880:CDS 50.0%
! TTTCCCTGACTGGTCCTTCT+GGG + chr2.1:46647769-46647788 MS.gene068880:CDS 50.0%
!! TTTTCCCTGACTGGTCCTTC+TGG + chr2.1:46647768-46647787 MS.gene068880:CDS 50.0%
!!! AACGGCGCATTTTAGGTTGG+TGG + chr2.1:46647520-46647539 MS.gene068880:CDS 50.0%
AACCCCAGAAGGACCAGTCA+GGG - chr2.1:46647775-46647794 None:intergenic 55.0%
AAGAGTTCCTGAAGGAGCCG+TGG + chr2.1:46649402-46649421 MS.gene068880:CDS 55.0%
ACGGCTCCTTCAGGAACTCT+TGG - chr2.1:46649403-46649422 None:intergenic 55.0%
ATGGGGCCAAGCATGCTTCA+CGG - chr2.1:46647854-46647873 None:intergenic 55.0%
CCATGATCAATGACGCGACC+AGG - chr2.1:46649207-46649226 None:intergenic 55.0%
CCTGGTCGCGTCATTGATCA+TGG + chr2.1:46649204-46649223 MS.gene068880:intron 55.0%
CCTGTTGTGCCCATGGGATT+GGG + chr2.1:46647695-46647714 MS.gene068880:CDS 55.0%
CTTGTGCAAGCCATGGTCTC+CGG - chr2.1:46649436-46649455 None:intergenic 55.0%
GGGATCAAATGGAGGAGGCA+AGG - chr2.1:46649530-46649549 None:intergenic 55.0%
TTGTGCAAGCCATGGTCTCC+GGG - chr2.1:46649435-46649454 None:intergenic 55.0%
! TTCCCTGACTGGTCCTTCTG+GGG + chr2.1:46647770-46647789 MS.gene068880:CDS 55.0%
! TTGGGCCCACCACCTGTTTT+TGG + chr2.1:46647713-46647732 MS.gene068880:CDS 55.0%
AATGGAGGAGGCAAGGGGCA+AGG - chr2.1:46649523-46649542 None:intergenic 60.0%
ATCAATGACGCGACCAGGGC+CGG - chr2.1:46649202-46649221 None:intergenic 60.0%
ATGGAGGAGGCAAGGGGCAA+GGG - chr2.1:46649522-46649541 None:intergenic 60.0%
CAACCCCAGAAGGACCAGTC+AGG - chr2.1:46647776-46647795 None:intergenic 60.0%
CCCAATCCCATGGGCACAAC+AGG - chr2.1:46647698-46647717 None:intergenic 60.0%
GCCTGTTGTGCCCATGGGAT+TGG + chr2.1:46647694-46647713 MS.gene068880:CDS 60.0%
TGGGGCCAAGCATGCTTCAC+GGG - chr2.1:46647853-46647872 None:intergenic 60.0%
! CTGTGCTGATCGGTGGACAC+AGG + chr2.1:46647739-46647758 MS.gene068880:CDS 60.0%
!! CTGACTGGTCCTTCTGGGGT+TGG + chr2.1:46647774-46647793 MS.gene068880:CDS 60.0%
ACCAGGGCCGGTCCAAACAC+AGG - chr2.1:46649190-46649209 None:intergenic 65.0%
CACAGCTCCACGGCTCCTTC+AGG - chr2.1:46649412-46649431 None:intergenic 65.0%
!! AGGTGGTGGGCCCAATCCCA+TGG - chr2.1:46647708-46647727 None:intergenic 65.0%
!! GGTGGTGGGCCCAATCCCAT+GGG - chr2.1:46647707-46647726 None:intergenic 65.0%
AGGAGCCGTGGAGCTGTGCC+CGG + chr2.1:46649414-46649433 MS.gene068880:CDS 70.0%
GCCTGTGTTTGGACCGGCCC+TGG + chr2.1:46649186-46649205 MS.gene068880:intron 70.0%
GGAGCTGTGCCCGGAGACCA+TGG + chr2.1:46649423-46649442 MS.gene068880:CDS 70.0%
GGTCTCCGGGCACAGCTCCA+CGG - chr2.1:46649422-46649441 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 46647500 46649639 46647500 ID=MS.gene068880
chr2.1 mRNA 46647500 46649639 46647500 ID=MS.gene068880.t1;Parent=MS.gene068880
chr2.1 exon 46647500 46647795 46647500 ID=MS.gene068880.t1.exon1;Parent=MS.gene068880.t1
chr2.1 CDS 46647500 46647795 46647500 ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1
chr2.1 exon 46648321 46648513 46648321 ID=MS.gene068880.t1.exon2;Parent=MS.gene068880.t1
chr2.1 CDS 46648321 46648513 46648321 ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1
chr2.1 exon 46648603 46648667 46648603 ID=MS.gene068880.t1.exon3;Parent=MS.gene068880.t1
chr2.1 CDS 46648603 46648667 46648603 ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1
chr2.1 exon 46648780 46648990 46648780 ID=MS.gene068880.t1.exon4;Parent=MS.gene068880.t1
chr2.1 CDS 46648780 46648990 46648780 ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1
chr2.1 exon 46649283 46649639 46649283 ID=MS.gene068880.t1.exon5;Parent=MS.gene068880.t1
chr2.1 CDS 46649283 46649639 46649283 ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1
Gene Sequence

>MS.gene068880

ATGGTGGAGAAAGCAAAGAAAACGGCGCATTTTAGGTTGGTGGTGAAAAATGGAAAAGGGTATATAGAGAAATACAAGAACAAAGAAGCTATACAAACACGTGATGTTTTCACCGTTTGGGGGATTCTGCAATTACTGAGAAAGTACCCTGGTAAAATTCCAGACTTGGAACTCATGTTTGATTGTAATGATAAGCCTGTTGTGCCCATGGGATTGGGCCCACCACCTGTTTTTGGTTACTGTGCTGATCGGTGGACACAGGACATTGTTTTCCCTGACTGGTCCTTCTGGGGTTGGTATGTTCTTAAACACATTCTACTAGTGTACACATTCTTCTTGTTTTAATAATTCCCGTGAAGCATGCTTGGCCCCATTTTTATGTTATTTGGATCCATATAGTTGTTGATTAATGTAGGTCATTGTCATTCAAAGTTTGTGGTTATGTTTAGTCGCAGACAAGAAAATGTGATTATTGTTCGTACCTTTGTTATGTCGACGGTCCAGTTAGTTAGTTATTGAATAAACTAGTCTCTAAACCATTATTATCTCTTCAATTTAGTATTTAAATAAACTATATAAATATAATTAGTCTCTAAAATATATGAAATTCATCAATTTCGTCTTTGAAGTGTATAAAAATCCGTCAATTTTGTTCCCTACATCTTAGAAGCAACAATTAAATTGACATATTTTATATACTTTATGGATTCCTTATTATATTTATATAGTTTAGAAATTAAATTGCATAGTAAGTAATAGTTTAAGTACTAAATTCATGGTTTATTCTTAGTAATTCATGAAATGCAATGGTTTTATTTCAGGGCTGAGATTAATATAAGCCCTTGGGAACATCTTCTGAAGGATATAAAAAAGGGGAACAAAAGAGTAAAATGGAAAGACAGAGAACCTTATGCTTATTGGAAAGGAAATCCTTATACTGCCGCAACACGACTAGACTTCCTCAATTGTAATGTTTCAACCGCACAGGATTGGAAACTCCGTTTATTTACGCAGGTACAGACATATCTAAAGGCTTTCTGATAAGTTATAAATAACACACATATCAGTTTACAAAATGATGATATTTTGTCACAAATATGTAGGATTGGATTAAAGAGTCTGAACAAGGATTCAATCACTCAAACTTGGCAGACCAATGTACATATAGGTAGTTCCATTTAATCTCAGATCACATATGTTTTATTATTTTTTATCCCAAAATTCATCATGTACATTTAAATTAATATAATATGTATGTATTTGATTTTCCTTGATATCAGATACAAAGTTTATATTGAAGGATACGCGTGGTCTGTGAGTGAGAAATACATTCTAGCCTGTGATTCCCCTACACTATTAGTGAAGCCTCGATACTACGATTTCTTCACAAGAAGCCTACAGCCATTGCAACATTATTGGCCTATAAGGGGCACTGACAAATGCAAATCCATCAAACATGCAGTTGATTGGGGCAATAATCATGAGCAAAAAGTGAGTCTCACTCCATCGCATCTCTTTCGATATTCCTTGTCATTCATTTGTCTTAAAAGTCCATATACCGTGTATGCTTCTTGACAGTAGTAAAGGTTTAAATCGTGGTTATGATATTATATCGCGGAAAATCTTAGTCAAATGTTTTTGAGGCAACCTCAATTGTAATTGCAAGGCAGGCCTAAGATTTAGTGAGCCTGTGTTTGGACCGGCCCTGGTCGCGTCATTGATCATGGTTGCATATCTTTGTTTAAAACGTAGATAATAATGTGTACCGCTACTAACTTGACAGGTACAGGAAATTGGTAAAGCCGGGAGCAAGTTTATTCAAGAAGAGCTCAACATGGATTACATTTATGACTATATGTTCCATTTGCTAAATGAATATTCCAAGCTTCTCAAGTTTGAGCCAAGAGTTCCTGAAGGAGCCGTGGAGCTGTGCCCGGAGACCATGGCTTGCACAAGATCATATTCAGTGGAGAAGAAATTTATGAGTGAATCCATGGTTAGGGAACCTTCTACAAAAGACCCTTGCCCCTTGCCTCCTCCATTTGATCCCACATCACTTAGGATTTTTTATGCAACGAAACAAAATTTAATCAACCGAGTTGAGAGGTGGGAAGATGAATATTGGAAAAGTTACCAATGA

Protein sequence

>MS.gene068880.t1

MVEKAKKTAHFRLVVKNGKGYIEKYKNKEAIQTRDVFTVWGILQLLRKYPGKIPDLELMFDCNDKPVVPMGLGPPPVFGYCADRWTQDIVFPDWSFWGWAEINISPWEHLLKDIKKGNKRVKWKDREPYAYWKGNPYTAATRLDFLNCNVSTAQDWKLRLFTQDWIKESEQGFNHSNLADQCTYRYKVYIEGYAWSVSEKYILACDSPTLLVKPRYYDFFTRSLQPLQHYWPIRGTDKCKSIKHAVDWGNNHEQKVQEIGKAGSKFIQEELNMDYIYDYMFHLLNEYSKLLKFEPRVPEGAVELCPETMACTRSYSVEKKFMSESMVREPSTKDPCPLPPPFDPTSLRIFYATKQNLINRVERWEDEYWKSYQ