Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068880.t1 | XP_003611113.1 | 96 | 373 | 15 | 0 | 1 | 373 | 130 | 502 | 8.30E-222 | 779.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068880.t1 | B0X1Q4 | 26.1 | 283 | 185 | 6 | 41 | 304 | 125 | 402 | 3.1e-23 | 110.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068880.t1 | G7KDD6 | 96.0 | 373 | 15 | 0 | 1 | 373 | 130 | 502 | 6.0e-222 | 779.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049396 | MS.gene068880 | 0.800477 | 1.41E-48 | -1.69E-46 |
MS.gene050375 | MS.gene068880 | 0.801884 | 7.29E-49 | -1.69E-46 |
MS.gene050400 | MS.gene068880 | 0.813737 | 2.20E-51 | -1.69E-46 |
MS.gene050593 | MS.gene068880 | 0.800017 | 1.76E-48 | -1.69E-46 |
MS.gene050670 | MS.gene068880 | 0.822224 | 2.66E-53 | -1.69E-46 |
MS.gene050971 | MS.gene068880 | 0.807016 | 6.21E-50 | -1.69E-46 |
MS.gene05105 | MS.gene068880 | 0.82958 | 4.75E-55 | -1.69E-46 |
MS.gene051255 | MS.gene068880 | 0.803153 | 3.99E-49 | -1.69E-46 |
MS.gene051360 | MS.gene068880 | 0.807401 | 5.15E-50 | -1.69E-46 |
MS.gene051525 | MS.gene068880 | 0.828732 | 7.63E-55 | -1.69E-46 |
MS.gene052346 | MS.gene068880 | 0.822185 | 2.71E-53 | -1.69E-46 |
MS.gene052414 | MS.gene068880 | 0.813363 | 2.66E-51 | -1.69E-46 |
MS.gene052485 | MS.gene068880 | 0.801834 | 7.47E-49 | -1.69E-46 |
MS.gene052999 | MS.gene068880 | 0.967334 | 3.91E-127 | -1.69E-46 |
MS.gene053169 | MS.gene068880 | 0.84875 | 5.02E-60 | -1.69E-46 |
MS.gene053449 | MS.gene068880 | 0.846566 | 2.00E-59 | -1.69E-46 |
MS.gene053758 | MS.gene068880 | 0.801038 | 1.09E-48 | -1.69E-46 |
MS.gene053813 | MS.gene068880 | 0.821199 | 4.58E-53 | -1.69E-46 |
MS.gene054556 | MS.gene068880 | 0.840523 | 8.26E-58 | -1.69E-46 |
MS.gene055116 | MS.gene068880 | 0.803018 | 4.26E-49 | -1.69E-46 |
MS.gene055666 | MS.gene068880 | 0.802565 | 5.28E-49 | -1.69E-46 |
MS.gene055741 | MS.gene068880 | 0.818275 | 2.13E-52 | -1.69E-46 |
MS.gene055744 | MS.gene068880 | 0.823733 | 1.18E-53 | -1.69E-46 |
MS.gene055909 | MS.gene068880 | 0.812037 | 5.19E-51 | -1.69E-46 |
MS.gene055911 | MS.gene068880 | 0.819682 | 1.02E-52 | -1.69E-46 |
MS.gene056191 | MS.gene068880 | 0.81893 | 1.52E-52 | -1.69E-46 |
MS.gene056422 | MS.gene068880 | 0.822526 | 2.26E-53 | -1.69E-46 |
MS.gene056511 | MS.gene068880 | 0.824232 | 9.02E-54 | -1.69E-46 |
MS.gene057019 | MS.gene068880 | 0.806755 | 7.05E-50 | -1.69E-46 |
MS.gene057289 | MS.gene068880 | 0.812561 | 3.98E-51 | -1.69E-46 |
MS.gene057749 | MS.gene068880 | 0.844407 | 7.70E-59 | -1.69E-46 |
MS.gene057823 | MS.gene068880 | 0.843303 | 1.52E-58 | -1.69E-46 |
MS.gene058700 | MS.gene068880 | 0.812714 | 3.69E-51 | -1.69E-46 |
MS.gene058995 | MS.gene068880 | 0.813891 | 2.03E-51 | -1.69E-46 |
MS.gene059129 | MS.gene068880 | 0.812526 | 4.06E-51 | -1.69E-46 |
MS.gene059294 | MS.gene068880 | 0.822867 | 1.88E-53 | -1.69E-46 |
MS.gene059366 | MS.gene068880 | 0.814047 | 1.88E-51 | -1.69E-46 |
MS.gene059420 | MS.gene068880 | 0.834495 | 2.90E-56 | -1.69E-46 |
MS.gene059674 | MS.gene068880 | 0.836444 | 9.32E-57 | -1.69E-46 |
MS.gene059807 | MS.gene068880 | 0.804152 | 2.48E-49 | -1.69E-46 |
MS.gene060372 | MS.gene068880 | 0.83065 | 2.61E-55 | -1.69E-46 |
MS.gene060837 | MS.gene068880 | 0.844442 | 7.54E-59 | -1.69E-46 |
MS.gene061154 | MS.gene068880 | 0.828361 | 9.38E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068880.t1 | MTR_5g010500 | 95.979 | 373 | 15 | 0 | 1 | 373 | 130 | 502 | 0.0 | 756 |
MS.gene068880.t1 | MTR_8g031470 | 64.550 | 378 | 125 | 3 | 1 | 371 | 118 | 493 | 0.0 | 526 |
MS.gene068880.t1 | MTR_8g031450 | 62.133 | 375 | 133 | 3 | 1 | 369 | 137 | 508 | 2.26e-180 | 511 |
MS.gene068880.t1 | MTR_0014s0440 | 63.298 | 376 | 128 | 3 | 2 | 370 | 119 | 491 | 3.39e-178 | 504 |
MS.gene068880.t1 | MTR_0014s0440 | 63.298 | 376 | 128 | 3 | 2 | 370 | 130 | 502 | 7.31e-178 | 504 |
MS.gene068880.t1 | MTR_8g031290 | 56.640 | 369 | 150 | 3 | 1 | 362 | 123 | 488 | 2.68e-157 | 451 |
MS.gene068880.t1 | MTR_8g031470 | 57.143 | 378 | 116 | 4 | 1 | 371 | 118 | 456 | 3.58e-157 | 450 |
MS.gene068880.t1 | MTR_7g076860 | 53.448 | 348 | 152 | 3 | 2 | 342 | 52 | 396 | 4.29e-144 | 414 |
MS.gene068880.t1 | MTR_7g076890 | 52.436 | 349 | 155 | 4 | 1 | 342 | 82 | 426 | 6.50e-142 | 410 |
MS.gene068880.t1 | MTR_3g464000 | 48.680 | 341 | 164 | 7 | 4 | 340 | 132 | 465 | 3.20e-111 | 333 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068880.t1 | AT5G23850 | 62.667 | 375 | 130 | 3 | 2 | 369 | 163 | 534 | 9.45e-177 | 503 |
MS.gene068880.t1 | AT3G48980 | 60.372 | 376 | 139 | 3 | 2 | 370 | 160 | 532 | 8.91e-175 | 498 |
MS.gene068880.t1 | AT3G48980 | 60.372 | 376 | 139 | 3 | 2 | 370 | 166 | 538 | 1.30e-174 | 497 |
MS.gene068880.t1 | AT1G63420 | 61.039 | 385 | 133 | 4 | 1 | 370 | 193 | 575 | 4.26e-173 | 494 |
MS.gene068880.t1 | AT2G45830 | 57.333 | 375 | 150 | 3 | 1 | 368 | 1 | 372 | 1.38e-164 | 466 |
MS.gene068880.t1 | AT2G45830 | 57.333 | 375 | 150 | 3 | 1 | 368 | 1 | 372 | 1.38e-164 | 466 |
MS.gene068880.t1 | AT2G45830 | 57.333 | 375 | 150 | 3 | 1 | 368 | 1 | 372 | 1.38e-164 | 466 |
MS.gene068880.t1 | AT2G45830 | 57.333 | 375 | 150 | 3 | 1 | 368 | 1 | 372 | 1.38e-164 | 466 |
MS.gene068880.t1 | AT3G61270 | 57.029 | 377 | 153 | 3 | 1 | 371 | 1 | 374 | 1.58e-164 | 465 |
MS.gene068880.t1 | AT3G61270 | 57.029 | 377 | 153 | 3 | 1 | 371 | 120 | 493 | 2.16e-163 | 467 |
MS.gene068880.t1 | AT2G45830 | 57.181 | 376 | 151 | 3 | 1 | 369 | 142 | 514 | 3.18e-163 | 468 |
MS.gene068880.t1 | AT2G45830 | 57.181 | 376 | 151 | 3 | 1 | 369 | 142 | 514 | 3.18e-163 | 468 |
MS.gene068880.t1 | AT3G61280 | 52.381 | 378 | 168 | 3 | 2 | 369 | 155 | 530 | 1.46e-144 | 421 |
MS.gene068880.t1 | AT2G45840 | 52.105 | 380 | 164 | 3 | 2 | 370 | 143 | 515 | 1.41e-143 | 417 |
MS.gene068880.t1 | AT3G61290 | 51.181 | 381 | 173 | 3 | 2 | 371 | 68 | 446 | 3.43e-139 | 404 |
MS.gene068880.t1 | AT1G63420 | 64.794 | 267 | 81 | 3 | 1 | 256 | 193 | 457 | 3.52e-123 | 363 |
MS.gene068880.t1 | AT1G07220 | 48.246 | 342 | 166 | 7 | 2 | 339 | 139 | 473 | 2.88e-114 | 342 |
MS.gene068880.t1 | AT3G61280 | 53.500 | 200 | 82 | 2 | 2 | 192 | 155 | 352 | 6.37e-71 | 226 |
Find 94 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGAGAACCTTATGCTTAT+TGG | 0.143284 | 2.1:+46648398 | MS.gene068880:CDS |
TGCAACATTATTGGCCTATA+AGG | 0.152325 | 2.1:+46648905 | MS.gene068880:CDS |
TACAGCCATTGCAACATTAT+TGG | 0.224609 | 2.1:+46648896 | MS.gene068880:CDS |
CATTTGTCAGTGCCCCTTAT+AGG | 0.272815 | 2.1:-46648919 | None:intergenic |
GCAACATTATTGGCCTATAA+GGG | 0.291368 | 2.1:+46648906 | MS.gene068880:CDS |
ACTTGACAGGTACAGGAAAT+TGG | 0.312878 | 2.1:+46649274 | MS.gene068880:intron |
TTTCCCTGACTGGTCCTTCT+GGG | 0.316015 | 2.1:+46647769 | MS.gene068880:CDS |
CCCAATCCCATGGGCACAAC+AGG | 0.323690 | 2.1:-46647695 | None:intergenic |
CACAGCTCCACGGCTCCTTC+AGG | 0.333183 | 2.1:-46649409 | None:intergenic |
CCAATCAACTGCATGTTTGA+TGG | 0.347036 | 2.1:-46648947 | None:intergenic |
AGGGGAACAAAAGAGTAAAA+TGG | 0.354181 | 2.1:+46648371 | MS.gene068880:CDS |
AGTCGTGTTGCGGCAGTATA+AGG | 0.359590 | 2.1:-46648430 | None:intergenic |
TGGAATATTCATTTAGCAAA+TGG | 0.360170 | 2.1:-46649360 | None:intergenic |
CCATCAAACATGCAGTTGAT+TGG | 0.367325 | 2.1:+46648947 | MS.gene068880:CDS |
GCCTGTTGTGCCCATGGGAT+TGG | 0.369989 | 2.1:+46647694 | MS.gene068880:CDS |
CATCAAACATGCAGTTGATT+GGG | 0.374429 | 2.1:+46648948 | MS.gene068880:CDS |
CCTGTTGTGCCCATGGGATT+GGG | 0.379519 | 2.1:+46647695 | MS.gene068880:CDS |
TTATGAGTGAATCCATGGTT+AGG | 0.390989 | 2.1:+46649479 | MS.gene068880:CDS |
AGAGGTGGGAAGATGAATAT+TGG | 0.400013 | 2.1:+46649602 | MS.gene068880:CDS |
TGGCTCAAACTTGAGAAGCT+TGG | 0.409168 | 2.1:-46649380 | None:intergenic |
TTTCCTTTCCAATAAGCATA+AGG | 0.416388 | 2.1:-46648406 | None:intergenic |
CTAAGTGATGTGGGATCAAA+TGG | 0.418582 | 2.1:-46649538 | None:intergenic |
CTGACTGGTCCTTCTGGGGT+TGG | 0.423962 | 2.1:+46647774 | MS.gene068880:CDS |
CTTGTGCAAGCCATGGTCTC+CGG | 0.424836 | 2.1:-46649433 | None:intergenic |
AGATACAAAGTTTATATTGA+AGG | 0.435834 | 2.1:+46648778 | MS.gene068880:intron |
CCCTGGTAAAATTCCAGACT+TGG | 0.439877 | 2.1:+46647646 | MS.gene068880:CDS |
TCTGTACCTGCGTAAATAAA+CGG | 0.459324 | 2.1:-46648498 | None:intergenic |
TCAAACATGAGTTCCAAGTC+TGG | 0.465096 | 2.1:-46647659 | None:intergenic |
GGATCAAATGGAGGAGGCAA+GGG | 0.468934 | 2.1:-46649526 | None:intergenic |
ACGGCTCCTTCAGGAACTCT+TGG | 0.477411 | 2.1:-46649400 | None:intergenic |
TATGAGTGAATCCATGGTTA+GGG | 0.480560 | 2.1:+46649480 | MS.gene068880:CDS |
GTACAGGAAATTGGTAAAGC+CGG | 0.483609 | 2.1:+46649283 | MS.gene068880:CDS |
AATGGAGGAGGCAAGGGGCA+AGG | 0.487872 | 2.1:-46649520 | None:intergenic |
CAACCCCAGAAGGACCAGTC+AGG | 0.488262 | 2.1:-46647773 | None:intergenic |
ATGGAGGAGGCAAGGGGCAA+GGG | 0.489670 | 2.1:-46649519 | None:intergenic |
GAACCTTATGCTTATTGGAA+AGG | 0.492867 | 2.1:+46648403 | MS.gene068880:CDS |
ATGTTTCAACCGCACAGGAT+TGG | 0.493210 | 2.1:+46648470 | MS.gene068880:CDS |
CTGAGATTAATATAAGCCCT+TGG | 0.494505 | 2.1:+46648323 | MS.gene068880:CDS |
CATTTGATCCCACATCACTT+AGG | 0.497579 | 2.1:+46649539 | MS.gene068880:CDS |
TGGCAGACCAATGTACATAT+AGG | 0.498282 | 2.1:+46648646 | MS.gene068880:CDS |
AGGTGGTGGGCCCAATCCCA+TGG | 0.502835 | 2.1:-46647705 | None:intergenic |
TTCTTGAATAAACTTGCTCC+CGG | 0.505080 | 2.1:-46649302 | None:intergenic |
TTGTAATGTTTCAACCGCAC+AGG | 0.505206 | 2.1:+46648465 | MS.gene068880:CDS |
GAAATTTATGAGTGAATCCA+TGG | 0.508746 | 2.1:+46649474 | MS.gene068880:CDS |
TTGTGCAAGCCATGGTCTCC+GGG | 0.511415 | 2.1:-46649432 | None:intergenic |
CGGTTGAAACATTACAATTG+AGG | 0.511958 | 2.1:-46648459 | None:intergenic |
TACAGGAAATTGGTAAAGCC+GGG | 0.515192 | 2.1:+46649284 | MS.gene068880:CDS |
GAGGCTTCACTAATAGTGTA+GGG | 0.515936 | 2.1:-46648846 | None:intergenic |
AGGAGCCGTGGAGCTGTGCC+CGG | 0.517508 | 2.1:+46649414 | MS.gene068880:CDS |
GGAGCTGTGCCCGGAGACCA+TGG | 0.520376 | 2.1:+46649423 | MS.gene068880:CDS |
CGAGGCTTCACTAATAGTGT+AGG | 0.521509 | 2.1:-46648847 | None:intergenic |
CATCTTCCCACCTCTCAACT+CGG | 0.523375 | 2.1:-46649594 | None:intergenic |
GGGATCAAATGGAGGAGGCA+AGG | 0.532099 | 2.1:-46649527 | None:intergenic |
TTCCCTGACTGGTCCTTCTG+GGG | 0.537571 | 2.1:+46647770 | MS.gene068880:CDS |
AGGATTCAATCACTCAAACT+TGG | 0.539657 | 2.1:+46648626 | MS.gene068880:CDS |
TGAGATTAATATAAGCCCTT+GGG | 0.543242 | 2.1:+46648324 | MS.gene068880:CDS |
TGATAAGCCTGTTGTGCCCA+TGG | 0.553336 | 2.1:+46647688 | MS.gene068880:CDS |
TAATAGTGTAGGGGAATCAC+AGG | 0.553816 | 2.1:-46648836 | None:intergenic |
GGTGGAGAAAGCAAAGAAAA+CGG | 0.555442 | 2.1:+46647502 | MS.gene068880:CDS |
TAATCAACCGAGTTGAGAGG+TGG | 0.563561 | 2.1:+46649587 | MS.gene068880:CDS |
TGTAGAAGGTTCCCTAACCA+TGG | 0.568492 | 2.1:-46649491 | None:intergenic |
GGAACTACCTATATGTACAT+TGG | 0.572220 | 2.1:-46648653 | None:intergenic |
AAGAGTTCCTGAAGGAGCCG+TGG | 0.572482 | 2.1:+46649402 | MS.gene068880:CDS |
TCCTTCAGAAGATGTTCCCA+AGG | 0.573383 | 2.1:-46648340 | None:intergenic |
CAACATTATTGGCCTATAAG+GGG | 0.581113 | 2.1:+46648907 | MS.gene068880:CDS |
AATAATGTTGCAATGGCTGT+AGG | 0.584450 | 2.1:-46648894 | None:intergenic |
ATCAAACATGCAGTTGATTG+GGG | 0.586497 | 2.1:+46648949 | MS.gene068880:CDS |
CCCTTGGGAACATCTTCTGA+AGG | 0.592442 | 2.1:+46648339 | MS.gene068880:CDS |
GGTCTCCGGGCACAGCTCCA+CGG | 0.592499 | 2.1:-46649419 | None:intergenic |
TGGATTAAAGAGTCTGAACA+AGG | 0.592715 | 2.1:+46648606 | MS.gene068880:CDS |
GGTGGTGGGCCCAATCCCAT+GGG | 0.595071 | 2.1:-46647704 | None:intergenic |
ATAGGCCAATAATGTTGCAA+TGG | 0.599822 | 2.1:-46648901 | None:intergenic |
ATTTAATCAACCGAGTTGAG+AGG | 0.603531 | 2.1:+46649584 | MS.gene068880:CDS |
TTGGTTACTGTGCTGATCGG+TGG | 0.603838 | 2.1:+46647732 | MS.gene068880:CDS |
AACCCCAGAAGGACCAGTCA+GGG | 0.609191 | 2.1:-46647772 | None:intergenic |
GATCAAATGGAGGAGGCAAG+GGG | 0.622941 | 2.1:-46649525 | None:intergenic |
GAGGAAGTCTAGTCGTGTTG+CGG | 0.623086 | 2.1:-46648440 | None:intergenic |
GATGTGGGATCAAATGGAGG+AGG | 0.623679 | 2.1:-46649532 | None:intergenic |
CTGTGCTGATCGGTGGACAC+AGG | 0.626551 | 2.1:+46647739 | MS.gene068880:CDS |
ATATGATCTTGTGCAAGCCA+TGG | 0.636615 | 2.1:-46649440 | None:intergenic |
TTTGAGCCAAGAGTTCCTGA+AGG | 0.639566 | 2.1:+46649394 | MS.gene068880:CDS |
AATCAACCGAGTTGAGAGGT+GGG | 0.639972 | 2.1:+46649588 | MS.gene068880:CDS |
GAAACTCCGTTTATTTACGC+AGG | 0.643555 | 2.1:+46648492 | MS.gene068880:CDS |
CCTTCAGAAGATGTTCCCAA+GGG | 0.643671 | 2.1:-46648339 | None:intergenic |
AAGAACATACCAACCCCAGA+AGG | 0.645283 | 2.1:-46647783 | None:intergenic |
GATAAGCCTGTTGTGCCCAT+GGG | 0.662497 | 2.1:+46647689 | MS.gene068880:CDS |
TATTCAAGAAGAGCTCAACA+TGG | 0.666732 | 2.1:+46649315 | MS.gene068880:CDS |
GTGAAGAAATCGTAGTATCG+AGG | 0.668956 | 2.1:-46648865 | None:intergenic |
AGTGATGTGGGATCAAATGG+AGG | 0.680524 | 2.1:-46649535 | None:intergenic |
AGGCTTCACTAATAGTGTAG+GGG | 0.685668 | 2.1:-46648845 | None:intergenic |
TTTATATTGAAGGATACGCG+TGG | 0.686560 | 2.1:+46648788 | MS.gene068880:CDS |
TTGCACAAGATCATATTCAG+TGG | 0.688665 | 2.1:+46649447 | MS.gene068880:CDS |
CAATTACTGAGAAAGTACCC+TGG | 0.713086 | 2.1:+46647629 | MS.gene068880:CDS |
ACGGAGTTTCCAATCCTGTG+CGG | 0.723022 | 2.1:-46648479 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GACATATTTTATATACTTTA+TGG | + | chr2.1:46648183-46648202 | MS.gene068880:intron | 15.0% |
!! | AGATACAAAGTTTATATTGA+AGG | + | chr2.1:46648778-46648797 | MS.gene068880:intron | 20.0% |
!! | ATCCAAATAACATAAAAATG+GGG | - | chr2.1:46647871-46647890 | None:intergenic | 20.0% |
!! | CTAAATTGAAGAGATAATAA+TGG | - | chr2.1:46648039-46648058 | None:intergenic | 20.0% |
!! | GATCCAAATAACATAAAAAT+GGG | - | chr2.1:46647872-46647891 | None:intergenic | 20.0% |
!! | TACATTAATCAACAACTATA+TGG | - | chr2.1:46647894-46647913 | None:intergenic | 20.0% |
!! | TAGTTTAAGTACTAAATTCA+TGG | + | chr2.1:46648256-46648275 | MS.gene068880:intron | 20.0% |
!! | TTATTCAATAACTAACTAAC+TGG | - | chr2.1:46648003-46648022 | None:intergenic | 20.0% |
!!! | AAATGTACATGATGAATTTT+GGG | - | chr2.1:46648717-46648736 | None:intergenic | 20.0% |
!!! | ATATAGTTGTTGATTAATGT+AGG | + | chr2.1:46647893-46647912 | MS.gene068880:intron | 20.0% |
!!! | ATATTTTGTCACAAATATGT+AGG | + | chr2.1:46648581-46648600 | MS.gene068880:intron | 20.0% |
!!! | TAAATGTACATGATGAATTT+TGG | - | chr2.1:46648718-46648737 | None:intergenic | 20.0% |
! | AAACTTTGTATCTGATATCA+AGG | - | chr2.1:46648771-46648790 | None:intergenic | 25.0% |
! | ATAAAAAATCCTAAGTGATG+TGG | - | chr2.1:46649551-46649570 | None:intergenic | 25.0% |
! | GGATCCAAATAACATAAAAA+TGG | - | chr2.1:46647873-46647892 | None:intergenic | 25.0% |
! | TAAAAAATCCTAAGTGATGT+GGG | - | chr2.1:46649550-46649569 | None:intergenic | 25.0% |
! | TAGTAATTCATGAAATGCAA+TGG | + | chr2.1:46648287-46648306 | MS.gene068880:intron | 25.0% |
! | TGGAATATTCATTTAGCAAA+TGG | - | chr2.1:46649363-46649382 | None:intergenic | 25.0% |
!! | ATATGTGATCTGAGATTAAA+TGG | - | chr2.1:46648677-46648696 | None:intergenic | 25.0% |
!! | CTTCTGAAGGATATAAAAAA+GGG | + | chr2.1:46648352-46648371 | MS.gene068880:CDS | 25.0% |
!! | TCTTCTGAAGGATATAAAAA+AGG | + | chr2.1:46648351-46648370 | MS.gene068880:CDS | 25.0% |
!! | TTCTGAAGGATATAAAAAAG+GGG | + | chr2.1:46648353-46648372 | MS.gene068880:CDS | 25.0% |
!! | TTTAAGACAAATGAATGACA+AGG | - | chr2.1:46649028-46649047 | None:intergenic | 25.0% |
!!! | AAATGCAATGGTTTTATTTC+AGG | + | chr2.1:46648299-46648318 | MS.gene068880:intron | 25.0% |
!!! | AATGCAATGGTTTTATTTCA+GGG | + | chr2.1:46648300-46648319 | MS.gene068880:intron | 25.0% |
!!! | ATCTTAGTCAAATGTTTTTG+AGG | + | chr2.1:46649121-46649140 | MS.gene068880:intron | 25.0% |
AGTAGTAAAGGTTTAAATCG+TGG | + | chr2.1:46649076-46649095 | MS.gene068880:intron | 30.0% | |
GAAATTTATGAGTGAATCCA+TGG | + | chr2.1:46649474-46649493 | MS.gene068880:CDS | 30.0% | |
GTGGTTATGATATTATATCG+CGG | + | chr2.1:46649095-46649114 | MS.gene068880:intron | 30.0% | |
TCATTGTCATTCAAAGTTTG+TGG | + | chr2.1:46647916-46647935 | MS.gene068880:intron | 30.0% | |
TGAGATTAATATAAGCCCTT+GGG | + | chr2.1:46648324-46648343 | MS.gene068880:CDS | 30.0% | |
TTGTCACAAATATGTAGGAT+TGG | + | chr2.1:46648586-46648605 | MS.gene068880:intron | 30.0% | |
TTTCCTTTCCAATAAGCATA+AGG | - | chr2.1:46648409-46648428 | None:intergenic | 30.0% | |
!! | AATTGTTGCTTCTAAGATGT+AGG | - | chr2.1:46648158-46648177 | None:intergenic | 30.0% |
!! | ATTGTTGCTTCTAAGATGTA+GGG | - | chr2.1:46648157-46648176 | None:intergenic | 30.0% |
AATAATGTTGCAATGGCTGT+AGG | - | chr2.1:46648897-46648916 | None:intergenic | 35.0% | |
ACAGAGAACCTTATGCTTAT+TGG | + | chr2.1:46648398-46648417 | MS.gene068880:CDS | 35.0% | |
AGGATTCAATCACTCAAACT+TGG | + | chr2.1:46648626-46648645 | MS.gene068880:CDS | 35.0% | |
AGGGGAACAAAAGAGTAAAA+TGG | + | chr2.1:46648371-46648390 | MS.gene068880:CDS | 35.0% | |
ATAGGCCAATAATGTTGCAA+TGG | - | chr2.1:46648904-46648923 | None:intergenic | 35.0% | |
ATCAAACATGCAGTTGATTG+GGG | + | chr2.1:46648949-46648968 | MS.gene068880:CDS | 35.0% | |
ATGCTTCTTGACAGTAGTAA+AGG | + | chr2.1:46649064-46649083 | MS.gene068880:intron | 35.0% | |
CAACCTCAATTGTAATTGCA+AGG | + | chr2.1:46649144-46649163 | MS.gene068880:intron | 35.0% | |
CATCAAACATGCAGTTGATT+GGG | + | chr2.1:46648948-46648967 | MS.gene068880:CDS | 35.0% | |
CGGTTGAAACATTACAATTG+AGG | - | chr2.1:46648462-46648481 | None:intergenic | 35.0% | |
CTGAGATTAATATAAGCCCT+TGG | + | chr2.1:46648323-46648342 | MS.gene068880:CDS | 35.0% | |
GAACCTTATGCTTATTGGAA+AGG | + | chr2.1:46648403-46648422 | MS.gene068880:CDS | 35.0% | |
GATGTAGGGAACAAAATTGA+CGG | - | chr2.1:46648143-46648162 | None:intergenic | 35.0% | |
GGAACTACCTATATGTACAT+TGG | - | chr2.1:46648656-46648675 | None:intergenic | 35.0% | |
TACAGCCATTGCAACATTAT+TGG | + | chr2.1:46648896-46648915 | MS.gene068880:CDS | 35.0% | |
TATGAGTGAATCCATGGTTA+GGG | + | chr2.1:46649480-46649499 | MS.gene068880:CDS | 35.0% | |
TATTCAAGAAGAGCTCAACA+TGG | + | chr2.1:46649315-46649334 | MS.gene068880:CDS | 35.0% | |
TCTGTACCTGCGTAAATAAA+CGG | - | chr2.1:46648501-46648520 | None:intergenic | 35.0% | |
TGGATTAAAGAGTCTGAACA+AGG | + | chr2.1:46648606-46648625 | MS.gene068880:CDS | 35.0% | |
TTATGAGTGAATCCATGGTT+AGG | + | chr2.1:46649479-46649498 | MS.gene068880:CDS | 35.0% | |
TTGCACAAGATCATATTCAG+TGG | + | chr2.1:46649447-46649466 | MS.gene068880:CDS | 35.0% | |
TTTATATTGAAGGATACGCG+TGG | + | chr2.1:46648788-46648807 | MS.gene068880:CDS | 35.0% | |
! | ATTTAATCAACCGAGTTGAG+AGG | + | chr2.1:46649584-46649603 | MS.gene068880:CDS | 35.0% |
! | CAACATTATTGGCCTATAAG+GGG | + | chr2.1:46648907-46648926 | MS.gene068880:CDS | 35.0% |
! | GCAACATTATTGGCCTATAA+GGG | + | chr2.1:46648906-46648925 | MS.gene068880:CDS | 35.0% |
! | TGCAACATTATTGGCCTATA+AGG | + | chr2.1:46648905-46648924 | MS.gene068880:CDS | 35.0% |
! | TGGTGGTGAAAAATGGAAAA+GGG | + | chr2.1:46647537-46647556 | MS.gene068880:CDS | 35.0% |
! | TTCTTGAATAAACTTGCTCC+CGG | - | chr2.1:46649305-46649324 | None:intergenic | 35.0% |
!! | GGCCCCATTTTTATGTTATT+TGG | + | chr2.1:46647866-46647885 | MS.gene068880:intron | 35.0% |
!! | TTGGTGGTGAAAAATGGAAA+AGG | + | chr2.1:46647536-46647555 | MS.gene068880:CDS | 35.0% |
!! | TTTAGGTTGGTGGTGAAAAA+TGG | + | chr2.1:46647530-46647549 | MS.gene068880:CDS | 35.0% |
!!! | TTTTTGGTTACTGTGCTGAT+CGG | + | chr2.1:46647729-46647748 | MS.gene068880:CDS | 35.0% |
ACACAGGCTCACTAAATCTT+AGG | - | chr2.1:46649174-46649193 | None:intergenic | 40.0% | |
ACTTGACAGGTACAGGAAAT+TGG | + | chr2.1:46649274-46649293 | MS.gene068880:intron | 40.0% | |
AGAGGTGGGAAGATGAATAT+TGG | + | chr2.1:46649602-46649621 | MS.gene068880:CDS | 40.0% | |
AGATTTAGTGAGCCTGTGTT+TGG | + | chr2.1:46649175-46649194 | MS.gene068880:intron | 40.0% | |
AGGCTTCACTAATAGTGTAG+GGG | - | chr2.1:46648848-46648867 | None:intergenic | 40.0% | |
AGTAACCAAAAACAGGTGGT+GGG | - | chr2.1:46647721-46647740 | None:intergenic | 40.0% | |
ATATGATCTTGTGCAAGCCA+TGG | - | chr2.1:46649443-46649462 | None:intergenic | 40.0% | |
CATTTGATCCCACATCACTT+AGG | + | chr2.1:46649539-46649558 | MS.gene068880:CDS | 40.0% | |
CCAATCAACTGCATGTTTGA+TGG | - | chr2.1:46648950-46648969 | None:intergenic | 40.0% | |
CCATCAAACATGCAGTTGAT+TGG | + | chr2.1:46648947-46648966 | MS.gene068880:CDS | 40.0% | |
CTAAGTGATGTGGGATCAAA+TGG | - | chr2.1:46649541-46649560 | None:intergenic | 40.0% | |
CTCAATTGTAATTGCAAGGC+AGG | + | chr2.1:46649148-46649167 | MS.gene068880:intron | 40.0% | |
CTGCCTTGCAATTACAATTG+AGG | - | chr2.1:46649150-46649169 | None:intergenic | 40.0% | |
GAAACTCCGTTTATTTACGC+AGG | + | chr2.1:46648492-46648511 | MS.gene068880:CDS | 40.0% | |
GAATATCGAAAGAGATGCGA+TGG | - | chr2.1:46649006-46649025 | None:intergenic | 40.0% | |
GAGGCTTCACTAATAGTGTA+GGG | - | chr2.1:46648849-46648868 | None:intergenic | 40.0% | |
GCAGGTACAGACATATCTAA+AGG | + | chr2.1:46648510-46648529 | MS.gene068880:intron | 40.0% | |
GGTGGAGAAAGCAAAGAAAA+CGG | + | chr2.1:46647502-46647521 | MS.gene068880:CDS | 40.0% | |
GTACAGGAAATTGGTAAAGC+CGG | + | chr2.1:46649283-46649302 | MS.gene068880:CDS | 40.0% | |
GTGAAGAAATCGTAGTATCG+AGG | - | chr2.1:46648868-46648887 | None:intergenic | 40.0% | |
TAATAGTGTAGGGGAATCAC+AGG | - | chr2.1:46648839-46648858 | None:intergenic | 40.0% | |
TAATTGCAGAATCCCCCAAA+CGG | - | chr2.1:46647615-46647634 | None:intergenic | 40.0% | |
TACAGGAAATTGGTAAAGCC+GGG | + | chr2.1:46649284-46649303 | MS.gene068880:CDS | 40.0% | |
TCAAACATGAGTTCCAAGTC+TGG | - | chr2.1:46647662-46647681 | None:intergenic | 40.0% | |
TCAGCACAGTAACCAAAAAC+AGG | - | chr2.1:46647728-46647747 | None:intergenic | 40.0% | |
TGGCAGACCAATGTACATAT+AGG | + | chr2.1:46648646-46648665 | MS.gene068880:CDS | 40.0% | |
TGTACCTGTCAAGTTAGTAG+CGG | - | chr2.1:46649268-46649287 | None:intergenic | 40.0% | |
TTGTAATGTTTCAACCGCAC+AGG | + | chr2.1:46648465-46648484 | MS.gene068880:CDS | 40.0% | |
! | ACGTGATGTTTTCACCGTTT+GGG | + | chr2.1:46647598-46647617 | MS.gene068880:CDS | 40.0% |
! | CAAAGAAAACGGCGCATTTT+AGG | + | chr2.1:46647513-46647532 | MS.gene068880:CDS | 40.0% |
! | CAAGAAGCATACACGGTATA+TGG | - | chr2.1:46649054-46649073 | None:intergenic | 40.0% |
! | CTACTGTCAAGAAGCATACA+CGG | - | chr2.1:46649061-46649080 | None:intergenic | 40.0% |
! | TCGTACCTTTGTTATGTCGA+CGG | + | chr2.1:46647976-46647995 | MS.gene068880:intron | 40.0% |
!! | CAATTACTGAGAAAGTACCC+TGG | + | chr2.1:46647629-46647648 | MS.gene068880:CDS | 40.0% |
!! | CCAAGTCTGGAATTTTACCA+GGG | - | chr2.1:46647649-46647668 | None:intergenic | 40.0% |
!! | TCCAAGTCTGGAATTTTACC+AGG | - | chr2.1:46647650-46647669 | None:intergenic | 40.0% |
AAGAACATACCAACCCCAGA+AGG | - | chr2.1:46647786-46647805 | None:intergenic | 45.0% | |
AGTGATGTGGGATCAAATGG+AGG | - | chr2.1:46649538-46649557 | None:intergenic | 45.0% | |
ATGTTTCAACCGCACAGGAT+TGG | + | chr2.1:46648470-46648489 | MS.gene068880:CDS | 45.0% | |
CAGTAACCAAAAACAGGTGG+TGG | - | chr2.1:46647722-46647741 | None:intergenic | 45.0% | |
CATTTGTCAGTGCCCCTTAT+AGG | - | chr2.1:46648922-46648941 | None:intergenic | 45.0% | |
CCCTGGTAAAATTCCAGACT+TGG | + | chr2.1:46647646-46647665 | MS.gene068880:CDS | 45.0% | |
CCTTCAGAAGATGTTCCCAA+GGG | - | chr2.1:46648342-46648361 | None:intergenic | 45.0% | |
CGAGGCTTCACTAATAGTGT+AGG | - | chr2.1:46648850-46648869 | None:intergenic | 45.0% | |
GCACAGTAACCAAAAACAGG+TGG | - | chr2.1:46647725-46647744 | None:intergenic | 45.0% | |
GCTACTAACTTGACAGGTAC+AGG | + | chr2.1:46649267-46649286 | MS.gene068880:intron | 45.0% | |
TAATTCCCGTGAAGCATGCT+TGG | + | chr2.1:46647845-46647864 | MS.gene068880:intron | 45.0% | |
TCCTTCAGAAGATGTTCCCA+AGG | - | chr2.1:46648343-46648362 | None:intergenic | 45.0% | |
TGGCTCAAACTTGAGAAGCT+TGG | - | chr2.1:46649383-46649402 | None:intergenic | 45.0% | |
TGTACCGCTACTAACTTGAC+AGG | + | chr2.1:46649261-46649280 | MS.gene068880:intron | 45.0% | |
TGTAGAAGGTTCCCTAACCA+TGG | - | chr2.1:46649494-46649513 | None:intergenic | 45.0% | |
TTTGAGCCAAGAGTTCCTGA+AGG | + | chr2.1:46649394-46649413 | MS.gene068880:CDS | 45.0% | |
! | AATCAACCGAGTTGAGAGGT+GGG | + | chr2.1:46649588-46649607 | MS.gene068880:CDS | 45.0% |
! | AGGACATTGTTTTCCCTGAC+TGG | + | chr2.1:46647759-46647778 | MS.gene068880:CDS | 45.0% |
! | CACGTGATGTTTTCACCGTT+TGG | + | chr2.1:46647597-46647616 | MS.gene068880:CDS | 45.0% |
! | CGTGATGTTTTCACCGTTTG+GGG | + | chr2.1:46647599-46647618 | MS.gene068880:CDS | 45.0% |
! | GTGATGTTTTCACCGTTTGG+GGG | + | chr2.1:46647600-46647619 | MS.gene068880:CDS | 45.0% |
! | TAATCAACCGAGTTGAGAGG+TGG | + | chr2.1:46649587-46649606 | MS.gene068880:CDS | 45.0% |
!! | GAAAACGGCGCATTTTAGGT+TGG | + | chr2.1:46647517-46647536 | MS.gene068880:CDS | 45.0% |
!! | TAAACTATATAAATATAATA+AGG | - | chr2.1:46648212-46648231 | None:intergenic | 5.0% |
ACGGAGTTTCCAATCCTGTG+CGG | - | chr2.1:46648482-46648501 | None:intergenic | 50.0% | |
AGTCGTGTTGCGGCAGTATA+AGG | - | chr2.1:46648433-46648452 | None:intergenic | 50.0% | |
CATCTTCCCACCTCTCAACT+CGG | - | chr2.1:46649597-46649616 | None:intergenic | 50.0% | |
CATGATCAATGACGCGACCA+GGG | - | chr2.1:46649206-46649225 | None:intergenic | 50.0% | |
CCCTTGGGAACATCTTCTGA+AGG | + | chr2.1:46648339-46648358 | MS.gene068880:CDS | 50.0% | |
CTGGACCGTCGACATAACAA+AGG | - | chr2.1:46647984-46648003 | None:intergenic | 50.0% | |
GAGGAAGTCTAGTCGTGTTG+CGG | - | chr2.1:46648443-46648462 | None:intergenic | 50.0% | |
GATAAGCCTGTTGTGCCCAT+GGG | + | chr2.1:46647689-46647708 | MS.gene068880:CDS | 50.0% | |
GATCAAATGGAGGAGGCAAG+GGG | - | chr2.1:46649528-46649547 | None:intergenic | 50.0% | |
GATGTGGGATCAAATGGAGG+AGG | - | chr2.1:46649535-46649554 | None:intergenic | 50.0% | |
GGATCAAATGGAGGAGGCAA+GGG | - | chr2.1:46649529-46649548 | None:intergenic | 50.0% | |
TAGTGAGCCTGTGTTTGGAC+CGG | + | chr2.1:46649180-46649199 | MS.gene068880:intron | 50.0% | |
TGATAAGCCTGTTGTGCCCA+TGG | + | chr2.1:46647688-46647707 | MS.gene068880:CDS | 50.0% | |
! | GGGCAAGGGTCTTTTGTAGA+AGG | - | chr2.1:46649508-46649527 | None:intergenic | 50.0% |
! | TTGGTTACTGTGCTGATCGG+TGG | + | chr2.1:46647732-46647751 | MS.gene068880:CDS | 50.0% |
! | TTTCCCTGACTGGTCCTTCT+GGG | + | chr2.1:46647769-46647788 | MS.gene068880:CDS | 50.0% |
!! | TTTTCCCTGACTGGTCCTTC+TGG | + | chr2.1:46647768-46647787 | MS.gene068880:CDS | 50.0% |
!!! | AACGGCGCATTTTAGGTTGG+TGG | + | chr2.1:46647520-46647539 | MS.gene068880:CDS | 50.0% |
AACCCCAGAAGGACCAGTCA+GGG | - | chr2.1:46647775-46647794 | None:intergenic | 55.0% | |
AAGAGTTCCTGAAGGAGCCG+TGG | + | chr2.1:46649402-46649421 | MS.gene068880:CDS | 55.0% | |
ACGGCTCCTTCAGGAACTCT+TGG | - | chr2.1:46649403-46649422 | None:intergenic | 55.0% | |
ATGGGGCCAAGCATGCTTCA+CGG | - | chr2.1:46647854-46647873 | None:intergenic | 55.0% | |
CCATGATCAATGACGCGACC+AGG | - | chr2.1:46649207-46649226 | None:intergenic | 55.0% | |
CCTGGTCGCGTCATTGATCA+TGG | + | chr2.1:46649204-46649223 | MS.gene068880:intron | 55.0% | |
CCTGTTGTGCCCATGGGATT+GGG | + | chr2.1:46647695-46647714 | MS.gene068880:CDS | 55.0% | |
CTTGTGCAAGCCATGGTCTC+CGG | - | chr2.1:46649436-46649455 | None:intergenic | 55.0% | |
GGGATCAAATGGAGGAGGCA+AGG | - | chr2.1:46649530-46649549 | None:intergenic | 55.0% | |
TTGTGCAAGCCATGGTCTCC+GGG | - | chr2.1:46649435-46649454 | None:intergenic | 55.0% | |
! | TTCCCTGACTGGTCCTTCTG+GGG | + | chr2.1:46647770-46647789 | MS.gene068880:CDS | 55.0% |
! | TTGGGCCCACCACCTGTTTT+TGG | + | chr2.1:46647713-46647732 | MS.gene068880:CDS | 55.0% |
AATGGAGGAGGCAAGGGGCA+AGG | - | chr2.1:46649523-46649542 | None:intergenic | 60.0% | |
ATCAATGACGCGACCAGGGC+CGG | - | chr2.1:46649202-46649221 | None:intergenic | 60.0% | |
ATGGAGGAGGCAAGGGGCAA+GGG | - | chr2.1:46649522-46649541 | None:intergenic | 60.0% | |
CAACCCCAGAAGGACCAGTC+AGG | - | chr2.1:46647776-46647795 | None:intergenic | 60.0% | |
CCCAATCCCATGGGCACAAC+AGG | - | chr2.1:46647698-46647717 | None:intergenic | 60.0% | |
GCCTGTTGTGCCCATGGGAT+TGG | + | chr2.1:46647694-46647713 | MS.gene068880:CDS | 60.0% | |
TGGGGCCAAGCATGCTTCAC+GGG | - | chr2.1:46647853-46647872 | None:intergenic | 60.0% | |
! | CTGTGCTGATCGGTGGACAC+AGG | + | chr2.1:46647739-46647758 | MS.gene068880:CDS | 60.0% |
!! | CTGACTGGTCCTTCTGGGGT+TGG | + | chr2.1:46647774-46647793 | MS.gene068880:CDS | 60.0% |
ACCAGGGCCGGTCCAAACAC+AGG | - | chr2.1:46649190-46649209 | None:intergenic | 65.0% | |
CACAGCTCCACGGCTCCTTC+AGG | - | chr2.1:46649412-46649431 | None:intergenic | 65.0% | |
!! | AGGTGGTGGGCCCAATCCCA+TGG | - | chr2.1:46647708-46647727 | None:intergenic | 65.0% |
!! | GGTGGTGGGCCCAATCCCAT+GGG | - | chr2.1:46647707-46647726 | None:intergenic | 65.0% |
AGGAGCCGTGGAGCTGTGCC+CGG | + | chr2.1:46649414-46649433 | MS.gene068880:CDS | 70.0% | |
GCCTGTGTTTGGACCGGCCC+TGG | + | chr2.1:46649186-46649205 | MS.gene068880:intron | 70.0% | |
GGAGCTGTGCCCGGAGACCA+TGG | + | chr2.1:46649423-46649442 | MS.gene068880:CDS | 70.0% | |
GGTCTCCGGGCACAGCTCCA+CGG | - | chr2.1:46649422-46649441 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 46647500 | 46649639 | 46647500 | ID=MS.gene068880 |
chr2.1 | mRNA | 46647500 | 46649639 | 46647500 | ID=MS.gene068880.t1;Parent=MS.gene068880 |
chr2.1 | exon | 46647500 | 46647795 | 46647500 | ID=MS.gene068880.t1.exon1;Parent=MS.gene068880.t1 |
chr2.1 | CDS | 46647500 | 46647795 | 46647500 | ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1 |
chr2.1 | exon | 46648321 | 46648513 | 46648321 | ID=MS.gene068880.t1.exon2;Parent=MS.gene068880.t1 |
chr2.1 | CDS | 46648321 | 46648513 | 46648321 | ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1 |
chr2.1 | exon | 46648603 | 46648667 | 46648603 | ID=MS.gene068880.t1.exon3;Parent=MS.gene068880.t1 |
chr2.1 | CDS | 46648603 | 46648667 | 46648603 | ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1 |
chr2.1 | exon | 46648780 | 46648990 | 46648780 | ID=MS.gene068880.t1.exon4;Parent=MS.gene068880.t1 |
chr2.1 | CDS | 46648780 | 46648990 | 46648780 | ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1 |
chr2.1 | exon | 46649283 | 46649639 | 46649283 | ID=MS.gene068880.t1.exon5;Parent=MS.gene068880.t1 |
chr2.1 | CDS | 46649283 | 46649639 | 46649283 | ID=cds.MS.gene068880.t1;Parent=MS.gene068880.t1 |
Gene Sequence |
Protein sequence |