Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071173.t1 | XP_013456128.1 | 100 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 7.00E-45 | 189.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071173.t1 | Q9XGX7 | 80.6 | 93 | 18 | 0 | 1 | 93 | 1 | 93 | 5.4e-38 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071173.t1 | I3SBU8 | 100.0 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 5.0e-45 | 189.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene071173 | 0.813385 | 2.63E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene071173 | 0.800579 | 1.35E-48 | -1.69E-46 |
| MS.gene050916 | MS.gene071173 | 0.844887 | 5.72E-59 | -1.69E-46 |
| MS.gene051330 | MS.gene071173 | 0.848799 | 4.87E-60 | -1.69E-46 |
| MS.gene05134 | MS.gene071173 | 0.800268 | 1.56E-48 | -1.69E-46 |
| MS.gene051700 | MS.gene071173 | 0.802622 | 5.14E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene071173 | 0.810691 | 1.02E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene071173 | 0.855656 | 5.45E-62 | -1.69E-46 |
| MS.gene051903 | MS.gene071173 | 0.825438 | 4.69E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene071173 | 0.866432 | 2.86E-65 | -1.69E-46 |
| MS.gene053122 | MS.gene071173 | 0.806517 | 7.92E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene071173 | 0.847885 | 8.71E-60 | -1.69E-46 |
| MS.gene056075 | MS.gene071173 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene071173 | 0.805779 | 1.13E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene071173 | 0.819367 | 1.21E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene071173 | 0.852517 | 4.38E-61 | -1.69E-46 |
| MS.gene057094 | MS.gene071173 | 0.821412 | 4.09E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene071173 | 0.8096 | 1.75E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene071173 | 0.873987 | 9.60E-68 | -1.69E-46 |
| MS.gene06011 | MS.gene071173 | 0.817492 | 3.21E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene071173 | 0.875937 | 2.08E-68 | -1.69E-46 |
| MS.gene060830 | MS.gene071173 | 0.820892 | 5.39E-53 | -1.69E-46 |
| MS.gene060917 | MS.gene071173 | 0.801188 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001663 | MS.gene071173 | PPI |
| MS.gene31107 | MS.gene071173 | PPI |
| MS.gene052067 | MS.gene071173 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071173.t1 | MTR_4g063925 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 2.50e-66 | 194 |
| MS.gene071173.t1 | MTR_4g021715 | 46.237 | 93 | 33 | 1 | 1 | 93 | 1 | 76 | 9.56e-25 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071173.t1 | AT3G46560 | 78.495 | 93 | 20 | 0 | 1 | 93 | 1 | 93 | 4.39e-51 | 155 |
Find 20 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGCATGATTGCTGATA+TGG | 0.238381 | 4.2:-41040343 | MS.gene071173:CDS |
| AACCTCACCTGTCACGGATT+TGG | 0.342119 | 4.2:+41040268 | None:intergenic |
| CCAGGTTATTATACATTCTC+AGG | 0.398941 | 4.2:+41037066 | None:intergenic |
| AATCTTGAGTTGCAGCTCCT+TGG | 0.400935 | 4.2:+41036904 | None:intergenic |
| ATTCTTTGTTTATCAGCCTC+TGG | 0.451877 | 4.2:+41040312 | None:intergenic |
| AGAGGCTGATAAACAAAGAA+TGG | 0.503860 | 4.2:-41040310 | MS.gene071173:CDS |
| ATCAGCTCCAAATCCGTGAC+AGG | 0.514968 | 4.2:-41040275 | MS.gene071173:intron |
| CTCTGCACATCTTCGAACAC+AGG | 0.526331 | 4.2:+41036977 | None:intergenic |
| TTTGGGAACCTCACCTGTCA+CGG | 0.540460 | 4.2:+41040262 | None:intergenic |
| CTGAAGCACTCTATGCGTGT+TGG | 0.545186 | 4.2:-41036948 | MS.gene071173:CDS |
| GATTTGGAGCTGATCGATCA+TGG | 0.557131 | 4.2:+41040284 | None:intergenic |
| CCTGAGAATGTATAATAACC+TGG | 0.571370 | 4.2:-41037066 | MS.gene071173:CDS |
| CATGAAAGCATCTCTCCACC+AGG | 0.576768 | 4.2:+41037048 | None:intergenic |
| ACTCTATGCGTGTTGGCATG+AGG | 0.597417 | 4.2:-41036941 | MS.gene071173:CDS |
| TAAATCCCTGCAAAAGCAAG+AGG | 0.610554 | 4.2:-41037003 | MS.gene071173:CDS |
| GGAGCTGCAACTCAAGATTG+AGG | 0.617510 | 4.2:-41036900 | None:intergenic |
| AGGTTTGCTGAGCTCAACCA+AGG | 0.659807 | 4.2:-41036921 | MS.gene071173:CDS |
| GAGATGCTTTCATGATTGTG+TGG | 0.661772 | 4.2:-41037039 | MS.gene071173:CDS |
| TGATATGGAAAATCTTCCAG+AGG | 0.691125 | 4.2:-41040328 | MS.gene071173:CDS |
| GAGAATGTATAATAACCTGG+TGG | 0.692374 | 4.2:-41037063 | MS.gene071173:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATTAAGATTTAAAC+TGG | - | chr4.2:41038198-41038217 | MS.gene071173:intron | 10.0% |
| !! | TAATTTATTAGAACTTATAA+CGG | + | chr4.2:41039978-41039997 | None:intergenic | 10.0% |
| !!! | AGATTAATTTTTCAAATTTT+TGG | - | chr4.2:41038231-41038250 | MS.gene071173:intron | 10.0% |
| !!! | GATTAATTTTTCAAATTTTT+GGG | - | chr4.2:41038232-41038251 | MS.gene071173:intron | 10.0% |
| !!! | TCATATATATTTTAAGATAT+AGG | - | chr4.2:41037914-41037933 | MS.gene071173:intron | 10.0% |
| !!! | TCATGTTATTTTTATTTTTT+TGG | - | chr4.2:41037885-41037904 | MS.gene071173:intron | 10.0% |
| !! | AAAGTCATATGTAAAATAAA+CGG | + | chr4.2:41040028-41040047 | None:intergenic | 15.0% |
| !! | AATAATTTGAGCTTATTTAT+TGG | + | chr4.2:41039802-41039821 | None:intergenic | 15.0% |
| !! | AATTACTTGTTCATTAAATT+GGG | - | chr4.2:41038496-41038515 | MS.gene071173:intron | 15.0% |
| !! | ACATTAAATAGATCATTAAA+CGG | + | chr4.2:41038561-41038580 | None:intergenic | 15.0% |
| !! | ATATAATGTTCTATTTAATG+TGG | - | chr4.2:41037537-41037556 | MS.gene071173:intron | 15.0% |
| !! | CTTAATTTATTAGACTTTAT+TGG | + | chr4.2:41038190-41038209 | None:intergenic | 15.0% |
| !!! | ATAATGTGTTGAATTTATTT+TGG | - | chr4.2:41037155-41037174 | MS.gene071173:intron | 15.0% |
| !!! | TGAATCTTTTTTAAAATTTG+AGG | - | chr4.2:41039024-41039043 | MS.gene071173:intron | 15.0% |
| !!! | TTGAATTTATTTTGGAATTT+GGG | - | chr4.2:41037163-41037182 | MS.gene071173:intron | 15.0% |
| !! | AAAAAAACCTAAACTTTACA+AGG | + | chr4.2:41037105-41037124 | None:intergenic | 20.0% |
| !! | GAATTACTTGTTCATTAAAT+TGG | - | chr4.2:41038495-41038514 | MS.gene071173:intron | 20.0% |
| !! | GTTTAATGATCTATTTAATG+TGG | - | chr4.2:41038560-41038579 | MS.gene071173:intron | 20.0% |
| !! | TCAATATAGTACTTTACTTA+GGG | + | chr4.2:41039838-41039857 | None:intergenic | 20.0% |
| !! | TTATTGCTTCATTACATTAT+GGG | - | chr4.2:41040062-41040081 | MS.gene071173:intron | 20.0% |
| !! | TTGGTTTCATAAAATATTAG+TGG | - | chr4.2:41038074-41038093 | MS.gene071173:intron | 20.0% |
| !!! | ATTTTACATATGACTTTGTT+AGG | - | chr4.2:41040031-41040050 | MS.gene071173:intron | 20.0% |
| !!! | CATCGTAATTTGTAAATAAT+TGG | - | chr4.2:41037190-41037209 | MS.gene071173:intron | 20.0% |
| !!! | CTTTTTTTTCTTTCTTTTGT+TGG | - | chr4.2:41038981-41039000 | MS.gene071173:intron | 20.0% |
| !!! | GCTTTATTATTTACTCATTT+TGG | - | chr4.2:41038847-41038866 | MS.gene071173:intron | 20.0% |
| !!! | GTTGAATTTATTTTGGAATT+TGG | - | chr4.2:41037162-41037181 | MS.gene071173:intron | 20.0% |
| !!! | TGAATCTGTTTTTATATTGA+GGG | - | chr4.2:41038296-41038315 | MS.gene071173:intron | 20.0% |
| !!! | TGAATTTATTTTGGAATTTG+GGG | - | chr4.2:41037164-41037183 | MS.gene071173:intron | 20.0% |
| !!! | TTGAATCTGTTTTTATATTG+AGG | - | chr4.2:41038295-41038314 | MS.gene071173:intron | 20.0% |
| !!! | TTTTACATATGACTTTGTTA+GGG | - | chr4.2:41040032-41040051 | MS.gene071173:intron | 20.0% |
| ! | AAAATATTAGTGGTGTGTTT+GGG | - | chr4.2:41038084-41038103 | MS.gene071173:intron | 25.0% |
| ! | AAATAAATGTACAAACTTCG+AGG | + | chr4.2:41038932-41038951 | None:intergenic | 25.0% |
| ! | ACTTCAATTGTTATGACTTA+CGG | - | chr4.2:41037745-41037764 | MS.gene071173:intron | 25.0% |
| ! | ATAGACAACAAAAATCAATG+TGG | + | chr4.2:41037519-41037538 | None:intergenic | 25.0% |
| ! | ATTTCTACCTTGTAAAGTTT+AGG | - | chr4.2:41037095-41037114 | MS.gene071173:intron | 25.0% |
| ! | CAAATTATCAACATGTCATA+AGG | - | chr4.2:41039734-41039753 | MS.gene071173:intron | 25.0% |
| ! | CTCAATATAGTACTTTACTT+AGG | + | chr4.2:41039839-41039858 | None:intergenic | 25.0% |
| ! | GTAAATAATAAAGCTCAATG+TGG | + | chr4.2:41038841-41038860 | None:intergenic | 25.0% |
| ! | GTTATTGCTTCATTACATTA+TGG | - | chr4.2:41040061-41040080 | MS.gene071173:intron | 25.0% |
| ! | TAAAATATTAGTGGTGTGTT+TGG | - | chr4.2:41038083-41038102 | MS.gene071173:intron | 25.0% |
| ! | TATACCTTAATACAGTCTAT+AGG | - | chr4.2:41038690-41038709 | MS.gene071173:intron | 25.0% |
| ! | TATTGCTTCATTACATTATG+GGG | - | chr4.2:41040063-41040082 | MS.gene071173:intron | 25.0% |
| ! | TCATGCTAATTTATAAGTTG+CGG | - | chr4.2:41038321-41038340 | MS.gene071173:intron | 25.0% |
| ! | TTCATTCATCTATCACTATT+TGG | - | chr4.2:41038664-41038683 | MS.gene071173:intron | 25.0% |
| !! | AAAAAACGAAGCAATGATTT+TGG | + | chr4.2:41037009-41037028 | None:intergenic | 25.0% |
| !! | AAAAACGAAGCAATGATTTT+GGG | + | chr4.2:41037008-41037027 | None:intergenic | 25.0% |
| !! | CAAAATTTACCACCATTTTA+AGG | + | chr4.2:41039092-41039111 | None:intergenic | 25.0% |
| !!! | CTTCTAATGAACTAGTTTTT+GGG | + | chr4.2:41038003-41038022 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTTGAGGCTTCA+TGG | - | chr4.2:41039032-41039051 | MS.gene071173:intron | 25.0% |
| !!! | TTTTAAGGAGAACATCAATA+TGG | + | chr4.2:41039135-41039154 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTTTTCCCTGT+TGG | - | chr4.2:41037121-41037140 | MS.gene071173:intron | 25.0% |
| AAAACTCAATGTGGTACTTA+AGG | + | chr4.2:41038039-41038058 | None:intergenic | 30.0% | |
| AAAGTGGTAATTAAACCATG+AGG | + | chr4.2:41038526-41038545 | None:intergenic | 30.0% | |
| ACGGATAAGAAAAATCAAAG+TGG | + | chr4.2:41038542-41038561 | None:intergenic | 30.0% | |
| AGAAACATTCAAAAGTCACA+CGG | + | chr4.2:41039159-41039178 | None:intergenic | 30.0% | |
| AGTTATGACTTAAGCCAATA+TGG | - | chr4.2:41038760-41038779 | MS.gene071173:intron | 30.0% | |
| ATATGAGCCAATGTCTATAA+CGG | - | chr4.2:41037582-41037601 | MS.gene071173:intron | 30.0% | |
| CATGCTAATTTATAAGTTGC+GGG | - | chr4.2:41038322-41038341 | MS.gene071173:intron | 30.0% | |
| CCAAAAACTAGTTCATTAGA+AGG | - | chr4.2:41038001-41038020 | MS.gene071173:intron | 30.0% | |
| CTTTCTTATCTACTCAATGT+GGG | - | chr4.2:41039859-41039878 | MS.gene071173:intron | 30.0% | |
| TATGCTAATACAAACCAACA+GGG | + | chr4.2:41037138-41037157 | None:intergenic | 30.0% | |
| TCTACCTATAGACTGTATTA+AGG | + | chr4.2:41038697-41038716 | None:intergenic | 30.0% | |
| TGAAGTTGTTTATCCAAACA+AGG | + | chr4.2:41039575-41039594 | None:intergenic | 30.0% | |
| TGTGAGTTAGGATACAAAAA+GGG | + | chr4.2:41037719-41037738 | None:intergenic | 30.0% | |
| TTATGCTAATACAAACCAAC+AGG | + | chr4.2:41037139-41037158 | None:intergenic | 30.0% | |
| TTATTTCCATAAGTTGTCCA+GGG | + | chr4.2:41039697-41039716 | None:intergenic | 30.0% | |
| TTGTGAGTTAGGATACAAAA+AGG | + | chr4.2:41037720-41037739 | None:intergenic | 30.0% | |
| TTGTGCTTTCATTAAGAGTT+AGG | + | chr4.2:41039473-41039492 | None:intergenic | 30.0% | |
| ! | ATAGTGTTTTCATTGAGAGT+TGG | + | chr4.2:41038732-41038751 | None:intergenic | 30.0% |
| ! | ATTCATCGATCAGTATTTTG+TGG | - | chr4.2:41037642-41037661 | MS.gene071173:intron | 30.0% |
| ! | TATGTTTAGATGGAAGGTTT+TGG | - | chr4.2:41037768-41037787 | MS.gene071173:intron | 30.0% |
| ! | TGACTTTTGAATGTTTCTTC+TGG | - | chr4.2:41039161-41039180 | MS.gene071173:intron | 30.0% |
| ! | TTTTGATGTCCTCCTTAAAA+TGG | - | chr4.2:41039077-41039096 | MS.gene071173:intron | 30.0% |
| !! | AATTTACCACCATTTTAAGG+AGG | + | chr4.2:41039089-41039108 | None:intergenic | 30.0% |
| !! | TTGGTTTGTATTAGCATTAC+AGG | - | chr4.2:41039000-41039019 | MS.gene071173:intron | 30.0% |
| !! | TTTTAAGGAGAACGTAACTA+TGG | + | chr4.2:41038391-41038410 | None:intergenic | 30.0% |
| !!! | CCTTCTAATGAACTAGTTTT+TGG | + | chr4.2:41038004-41038023 | None:intergenic | 30.0% |
| !!! | GTTAGTTTTTGTTCTTCTGT+TGG | - | chr4.2:41038254-41038273 | MS.gene071173:intron | 30.0% |
| !!! | TGTCATGTTTTTTGGAGAAT+AGG | - | chr4.2:41037365-41037384 | MS.gene071173:intron | 30.0% |
| AAATAAATGTACCCCCTTTG+AGG | + | chr4.2:41037074-41037093 | None:intergenic | 35.0% | |
| AATAAATGTACCCCCTTTGA+GGG | + | chr4.2:41037073-41037092 | None:intergenic | 35.0% | |
| AATGTGGTACTTAAGGCATA+AGG | + | chr4.2:41038032-41038051 | None:intergenic | 35.0% | |
| ACCTAATGAACAAGTCTCTA+GGG | + | chr4.2:41038795-41038814 | None:intergenic | 35.0% | |
| AGAGGCTGATAAACAAAGAA+TGG | - | chr4.2:41036940-41036959 | MS.gene071173:CDS | 35.0% | |
| AGATGAATGAAGCCATGAAA+GGG | + | chr4.2:41038655-41038674 | None:intergenic | 35.0% | |
| AGTAACCCCTAAAATTTGCA+CGG | + | chr4.2:41038963-41038982 | None:intergenic | 35.0% | |
| AGTTGACATATTACCAGACA+GGG | - | chr4.2:41040130-41040149 | MS.gene071173:intron | 35.0% | |
| CATCAAACTAACTAGTCCAT+GGG | + | chr4.2:41037481-41037500 | None:intergenic | 35.0% | |
| CATTAGACGAAGGCTTAATT+AGG | - | chr4.2:41039274-41039293 | MS.gene071173:intron | 35.0% | |
| CCAGGTTATTATACATTCTC+AGG | + | chr4.2:41040187-41040206 | None:intergenic | 35.0% | |
| CCTGAGAATGTATAATAACC+TGG | - | chr4.2:41040184-41040203 | MS.gene071173:intron | 35.0% | |
| CTACAGAAAGGAATAGAATG+AGG | + | chr4.2:41039450-41039469 | None:intergenic | 35.0% | |
| CTCATGATAGATTAGTGGTA+TGG | - | chr4.2:41039883-41039902 | MS.gene071173:intron | 35.0% | |
| CTTATTTCCATAAGTTGTCC+AGG | + | chr4.2:41039698-41039717 | None:intergenic | 35.0% | |
| CTTCATGGTATGTAAGTTGT+TGG | - | chr4.2:41039047-41039066 | MS.gene071173:intron | 35.0% | |
| GAAACATTCAAAAGTCACAC+GGG | + | chr4.2:41039158-41039177 | None:intergenic | 35.0% | |
| GAGAATGTATAATAACCTGG+TGG | - | chr4.2:41040187-41040206 | MS.gene071173:intron | 35.0% | |
| GCTTTCTTATCTACTCAATG+TGG | - | chr4.2:41039858-41039877 | MS.gene071173:intron | 35.0% | |
| GTAGACAAGAAAACTCAATG+TGG | + | chr4.2:41038048-41038067 | None:intergenic | 35.0% | |
| TACTTTACTTAGGGTCTGTT+GGG | + | chr4.2:41039829-41039848 | None:intergenic | 35.0% | |
| TAGATGAATGAAGCCATGAA+AGG | + | chr4.2:41038656-41038675 | None:intergenic | 35.0% | |
| TAGTTGACATATTACCAGAC+AGG | - | chr4.2:41040129-41040148 | MS.gene071173:intron | 35.0% | |
| TATGACTTTGTTAGGGTGAT+TGG | - | chr4.2:41040039-41040058 | MS.gene071173:intron | 35.0% | |
| TCGGCTCTTAAAGTCTTAAA+GGG | + | chr4.2:41039339-41039358 | None:intergenic | 35.0% | |
| TGAAGTTATCGTTGTGAGTT+AGG | + | chr4.2:41037731-41037750 | None:intergenic | 35.0% | |
| TGACTTACGGTATGTTTAGA+TGG | - | chr4.2:41037758-41037777 | MS.gene071173:intron | 35.0% | |
| TGATATGGAAAATCTTCCAG+AGG | - | chr4.2:41036922-41036941 | MS.gene071173:CDS | 35.0% | |
| TTAAGAGCCGACATATACTA+CGG | - | chr4.2:41039348-41039367 | MS.gene071173:intron | 35.0% | |
| TTAAGAGTTAGGCTACAGAA+AGG | + | chr4.2:41039462-41039481 | None:intergenic | 35.0% | |
| TTACGGTATGTTTAGATGGA+AGG | - | chr4.2:41037762-41037781 | MS.gene071173:intron | 35.0% | |
| TTGTATTAGACTCTCCTTGT+GGG | + | chr4.2:41039512-41039531 | None:intergenic | 35.0% | |
| TTTGTATTAGACTCTCCTTG+TGG | + | chr4.2:41039513-41039532 | None:intergenic | 35.0% | |
| ! | AATGTTTCTTCTGGACGTTT+TGG | - | chr4.2:41039170-41039189 | MS.gene071173:intron | 35.0% |
| ! | ACTACATTTTCAACAAGTGG+TGG | - | chr4.2:41039195-41039214 | MS.gene071173:intron | 35.0% |
| ! | ATGCTGTCTTTTAGTACCTT+TGG | - | chr4.2:41037403-41037422 | MS.gene071173:intron | 35.0% |
| ! | ATGTTTCTTCTGGACGTTTT+GGG | - | chr4.2:41039171-41039190 | MS.gene071173:intron | 35.0% |
| ! | ATTCTTTGTTTATCAGCCTC+TGG | + | chr4.2:41036941-41036960 | None:intergenic | 35.0% |
| ! | CAAAAGCATGATTGCTGATA+TGG | - | chr4.2:41036907-41036926 | MS.gene071173:CDS | 35.0% |
| ! | GGAACTACATTTTCAACAAG+TGG | - | chr4.2:41039192-41039211 | MS.gene071173:intron | 35.0% |
| ! | GTGACTTTCAATGTTGCTTA+TGG | - | chr4.2:41038416-41038435 | MS.gene071173:intron | 35.0% |
| ! | GTTTGGGTTTCAGTTCAAAA+AGG | - | chr4.2:41038100-41038119 | MS.gene071173:intron | 35.0% |
| ! | TGACTATTGAATGTTGCTTC+TGG | - | chr4.2:41037285-41037304 | MS.gene071173:intron | 35.0% |
| ! | TGCTGTCTTTTAGTACCTTT+GGG | - | chr4.2:41037404-41037423 | MS.gene071173:intron | 35.0% |
| ! | TTATCCTTAGTTCTCCCAAA+CGG | - | chr4.2:41039759-41039778 | MS.gene071173:intron | 35.0% |
| ! | TTATGGGGCTCTTGTATTTT+TGG | - | chr4.2:41040078-41040097 | MS.gene071173:intron | 35.0% |
| ! | TTTCCACCGTGCAAATTTTA+GGG | - | chr4.2:41038954-41038973 | MS.gene071173:intron | 35.0% |
| ! | TTTTCCACCGTGCAAATTTT+AGG | - | chr4.2:41038953-41038972 | MS.gene071173:intron | 35.0% |
| ! | TTTTCTTGTCTACTCGATGT+TGG | - | chr4.2:41038055-41038074 | MS.gene071173:intron | 35.0% |
| !! | AATGTTGCTTATGGACGTTT+TGG | - | chr4.2:41038425-41038444 | MS.gene071173:intron | 35.0% |
| !! | ATAGACATTGGCTCATATAG+AGG | + | chr4.2:41037580-41037599 | None:intergenic | 35.0% |
| !! | ATGTTGCTTATGGACGTTTT+GGG | - | chr4.2:41038426-41038445 | MS.gene071173:intron | 35.0% |
| !! | CATGGACTAGTTAGTTTGAT+GGG | - | chr4.2:41037480-41037499 | MS.gene071173:intron | 35.0% |
| !! | TTTTAAGGAGAACATCACTC+TGG | + | chr4.2:41037259-41037278 | None:intergenic | 35.0% |
| !!! | CAATAGTCACACTGGTTTTA+AGG | + | chr4.2:41037274-41037293 | None:intergenic | 35.0% |
| !!! | CTTGTAGCTGTCATGTTTTT+TGG | - | chr4.2:41037357-41037376 | MS.gene071173:intron | 35.0% |
| !!! | TGAAAGTCACACTGGTTTTA+AGG | + | chr4.2:41038406-41038425 | None:intergenic | 35.0% |
| !!! | TTTAGATGGAAGGTTTTGGA+GGG | - | chr4.2:41037772-41037791 | MS.gene071173:intron | 35.0% |
| AAACAAGGTCTTAAGCCATG+AGG | + | chr4.2:41039560-41039579 | None:intergenic | 40.0% | |
| AAACACTTGTGAGACCGTTT+GGG | + | chr4.2:41039776-41039795 | None:intergenic | 40.0% | |
| AAAGGGGAAAGGGATAAAAG+TGG | + | chr4.2:41038638-41038657 | None:intergenic | 40.0% | |
| AAATGAGTGAACCTGCCAAA+GGG | + | chr4.2:41039401-41039420 | None:intergenic | 40.0% | |
| AAGGGATAAAAGTGGGTGAA+AGG | + | chr4.2:41038630-41038649 | None:intergenic | 40.0% | |
| AAGGGGAAAGGGATAAAAGT+GGG | + | chr4.2:41038637-41038656 | None:intergenic | 40.0% | |
| ACAAAAAGGGCTGCCTATAT+AGG | + | chr4.2:41037706-41037725 | None:intergenic | 40.0% | |
| AGCAACATTGAAAGTCACAC+TGG | + | chr4.2:41038414-41038433 | None:intergenic | 40.0% | |
| ATAAATGTACCCCCTTTGAG+GGG | + | chr4.2:41037072-41037091 | None:intergenic | 40.0% | |
| ATTAAATTGGGAGAGCCTCA+TGG | - | chr4.2:41038508-41038527 | MS.gene071173:intron | 40.0% | |
| CAAAATCAGATAACCCTGTC+TGG | + | chr4.2:41040146-41040165 | None:intergenic | 40.0% | |
| CACCTAATGAACAAGTCTCT+AGG | + | chr4.2:41038796-41038815 | None:intergenic | 40.0% | |
| CATCAAGTCTAAGAACCTCA+TGG | - | chr4.2:41039542-41039561 | MS.gene071173:intron | 40.0% | |
| CCAGAATGAAGAGTTACAGA+GGG | + | chr4.2:41040005-41040024 | None:intergenic | 40.0% | |
| CCATCAAACTAACTAGTCCA+TGG | + | chr4.2:41037482-41037501 | None:intergenic | 40.0% | |
| CTCACTAGTTCATTAGACGA+AGG | - | chr4.2:41039264-41039283 | MS.gene071173:intron | 40.0% | |
| GAGATGCTTTCATGATTGTG+TGG | - | chr4.2:41040211-41040230 | MS.gene071173:intron | 40.0% | |
| GATGAATGAAGCCATGAAAG+GGG | + | chr4.2:41038654-41038673 | None:intergenic | 40.0% | |
| GCAACATTCAATAGTCACAC+TGG | + | chr4.2:41037282-41037301 | None:intergenic | 40.0% | |
| GTACTTTACTTAGGGTCTGT+TGG | + | chr4.2:41039830-41039849 | None:intergenic | 40.0% | |
| GTGAAAGCCGTAGTATATGT+CGG | + | chr4.2:41039358-41039377 | None:intergenic | 40.0% | |
| TAAATCCCTGCAAAAGCAAG+AGG | - | chr4.2:41040247-41040266 | MS.gene071173:intron | 40.0% | |
| TACCTTTGGGCTCTGTTTAA+TGG | - | chr4.2:41037417-41037436 | MS.gene071173:intron | 40.0% | |
| TAGGGTTAGACTCTCCATAT+TGG | + | chr4.2:41038777-41038796 | None:intergenic | 40.0% | |
| TCATGGCTTAAGACCTTGTT+TGG | - | chr4.2:41039559-41039578 | MS.gene071173:intron | 40.0% | |
| TGATGTCCTCCTTAAAATGG+TGG | - | chr4.2:41039080-41039099 | MS.gene071173:intron | 40.0% | |
| TGGGTCTCATGATAGATTAG+TGG | - | chr4.2:41039878-41039897 | MS.gene071173:intron | 40.0% | |
| TTCCATTAAACAGAGCCCAA+AGG | + | chr4.2:41037422-41037441 | None:intergenic | 40.0% | |
| TTTATCCCTTTCCCCTTTCA+TGG | - | chr4.2:41038640-41038659 | MS.gene071173:intron | 40.0% | |
| ! | ACCCTAGAGACTTGTTCATT+AGG | - | chr4.2:41038791-41038810 | MS.gene071173:intron | 40.0% |
| ! | CAAAAGTCACACGGGTTTTA+AGG | + | chr4.2:41039150-41039169 | None:intergenic | 40.0% |
| ! | CTACTAGTCTAGTGTGTGTT+TGG | + | chr4.2:41038160-41038179 | None:intergenic | 40.0% |
| ! | CTAGAGACTTGTTCATTAGG+TGG | - | chr4.2:41038794-41038813 | MS.gene071173:intron | 40.0% |
| ! | GTCGGCTCTTAAAGTCTTAA+AGG | + | chr4.2:41039340-41039359 | None:intergenic | 40.0% |
| ! | TTCCACCGTGCAAATTTTAG+GGG | - | chr4.2:41038955-41038974 | MS.gene071173:intron | 40.0% |
| !! | AATGTTGCTTCTGGACGTTT+TGG | - | chr4.2:41037294-41037313 | MS.gene071173:intron | 40.0% |
| !! | AGGAGGTTTTTGAAGGGTTT+GGG | + | chr4.2:41037949-41037968 | None:intergenic | 40.0% |
| !! | ATAACGGACTAGAGTGTGTT+TGG | + | chr4.2:41039962-41039981 | None:intergenic | 40.0% |
| !! | ATGTTGCTTCTGGACGTTTT+GGG | - | chr4.2:41037295-41037314 | MS.gene071173:intron | 40.0% |
| !! | CCATGGACTAGTTAGTTTGA+TGG | - | chr4.2:41037479-41037498 | MS.gene071173:intron | 40.0% |
| !! | GCTATTTTCATAAGTTGCCC+TGG | - | chr4.2:41039677-41039696 | MS.gene071173:intron | 40.0% |
| !! | GTTTAGATGGAAGGTTTTGG+AGG | - | chr4.2:41037771-41037790 | MS.gene071173:intron | 40.0% |
| !! | TTCTGGAGGAGGTTTTTGAA+GGG | + | chr4.2:41037955-41037974 | None:intergenic | 40.0% |
| !! | TTTCTGGAGGAGGTTTTTGA+AGG | + | chr4.2:41037956-41037975 | None:intergenic | 40.0% |
| !!! | AACTAGTTTTTGGGTTCTCC+TGG | + | chr4.2:41037994-41038013 | None:intergenic | 40.0% |
| !!! | TTAGATGGAAGGTTTTGGAG+GGG | - | chr4.2:41037773-41037792 | MS.gene071173:intron | 40.0% |
| AAAACACCCTTAAGCTCACC+AGG | - | chr4.2:41037973-41037992 | MS.gene071173:intron | 45.0% | |
| AACCCCTAAAATTTGCACGG+TGG | + | chr4.2:41038960-41038979 | None:intergenic | 45.0% | |
| AACTTCGAGGCGTAAATCTG+AGG | + | chr4.2:41038919-41038938 | None:intergenic | 45.0% | |
| AAGTTGCCCTGGACAACTTA+TGG | - | chr4.2:41039688-41039707 | MS.gene071173:intron | 45.0% | |
| AATGAGTGAACCTGCCAAAG+GGG | + | chr4.2:41039400-41039419 | None:intergenic | 45.0% | |
| AATGTGGTACTCAAGTCGTG+AGG | + | chr4.2:41038825-41038844 | None:intergenic | 45.0% | |
| ACTTATGTTACCCCCCTCAA+AGG | - | chr4.2:41037057-41037076 | MS.gene071173:CDS | 45.0% | |
| ATGAAGCCATGAAAGGGGAA+AGG | + | chr4.2:41038649-41038668 | None:intergenic | 45.0% | |
| ATGAAGGGCTGTCTATAGGT+TGG | + | chr4.2:41037679-41037698 | None:intergenic | 45.0% | |
| ATGTCTATAACGGCTTTCCC+TGG | - | chr4.2:41037592-41037611 | MS.gene071173:intron | 45.0% | |
| CAAATGAGTGAACCTGCCAA+AGG | + | chr4.2:41039402-41039421 | None:intergenic | 45.0% | |
| CCCTCTGTAACTCTTCATTC+TGG | - | chr4.2:41040002-41040021 | MS.gene071173:intron | 45.0% | |
| CTTATGTTACCCCCCTCAAA+GGG | - | chr4.2:41037058-41037077 | MS.gene071173:CDS | 45.0% | |
| GAAACACTTGTGAGACCGTT+TGG | + | chr4.2:41039777-41039796 | None:intergenic | 45.0% | |
| GCCAGAATGAAGAGTTACAG+AGG | + | chr4.2:41040006-41040025 | None:intergenic | 45.0% | |
| GCCTATATAGGCTGGATGAA+GGG | + | chr4.2:41037694-41037713 | None:intergenic | 45.0% | |
| GGGAAAGCCGTTATAGACAT+TGG | + | chr4.2:41037592-41037611 | None:intergenic | 45.0% | |
| TCGATGAATGAAGCCACCAA+CGG | + | chr4.2:41037631-41037650 | None:intergenic | 45.0% | |
| TGAAGCCATGAAAGGGGAAA+GGG | + | chr4.2:41038648-41038667 | None:intergenic | 45.0% | |
| TGCCTATATAGGCTGGATGA+AGG | + | chr4.2:41037695-41037714 | None:intergenic | 45.0% | |
| TGTTATGACTTGAGCCCACA+AGG | - | chr4.2:41039495-41039514 | MS.gene071173:intron | 45.0% | |
| TTATGTTACCCCCCTCAAAG+GGG | - | chr4.2:41037059-41037078 | MS.gene071173:CDS | 45.0% | |
| ! | AATCTTGAGTTGCAGCTCCT+TGG | + | chr4.2:41040349-41040368 | None:intergenic | 45.0% |
| ! | GATTTGGAGCTGATCGATCA+TGG | + | chr4.2:41036969-41036988 | None:intergenic | 45.0% |
| ! | TAAATGTACCCCCTTTGAGG+GGG | + | chr4.2:41037071-41037090 | None:intergenic | 45.0% |
| !! | AGGTTTCCTCTTGCTTTTGC+AGG | + | chr4.2:41040256-41040275 | None:intergenic | 45.0% |
| !! | GACATTGGCTCATATAGAGG+TGG | + | chr4.2:41037577-41037596 | None:intergenic | 45.0% |
| !! | GAGGAGGTTTTTGAAGGGTT+TGG | + | chr4.2:41037950-41037969 | None:intergenic | 45.0% |
| !! | GGTTTCCTCTTGCTTTTGCA+GGG | + | chr4.2:41040255-41040274 | None:intergenic | 45.0% |
| !! | GGTTTTTGAAGGGTTTGGGA+TGG | + | chr4.2:41037945-41037964 | None:intergenic | 45.0% |
| !!! | AGCTTAAGGGTGTTTTCTGG+AGG | + | chr4.2:41037969-41037988 | None:intergenic | 45.0% |
| !!! | GTGAGCTTAAGGGTGTTTTC+TGG | + | chr4.2:41037972-41037991 | None:intergenic | 45.0% |
| !!! | TTAAGGGTGTTTTCTGGAGG+AGG | + | chr4.2:41037966-41037985 | None:intergenic | 45.0% |
| AAAGGGCTGCCTATATAGGC+TGG | + | chr4.2:41037702-41037721 | None:intergenic | 50.0% | |
| AACCTCACCTGTCACGGATT+TGG | + | chr4.2:41036985-41037004 | None:intergenic | 50.0% | |
| AATGAAGCCACCAACGGGAA+AGG | + | chr4.2:41037625-41037644 | None:intergenic | 50.0% | |
| ATACTACGGCTTTCACCTGC+TGG | - | chr4.2:41039362-41039381 | MS.gene071173:intron | 50.0% | |
| ATCAGCTCCAAATCCGTGAC+AGG | - | chr4.2:41036975-41036994 | MS.gene071173:CDS | 50.0% | |
| ATGAAGCCACCAACGGGAAA+GGG | + | chr4.2:41037624-41037643 | None:intergenic | 50.0% | |
| CGATGAATGAAGCCACCAAC+GGG | + | chr4.2:41037630-41037649 | None:intergenic | 50.0% | |
| CTCTGCACATCTTCGAACAC+AGG | + | chr4.2:41040276-41040295 | None:intergenic | 50.0% | |
| CTGGATGAAGGGCTGTCTAT+AGG | + | chr4.2:41037683-41037702 | None:intergenic | 50.0% | |
| GAGACCGTTTGGGAGAACTA+AGG | + | chr4.2:41039766-41039785 | None:intergenic | 50.0% | |
| GCCCTTCATCCAGCCTATAT+AGG | - | chr4.2:41037690-41037709 | MS.gene071173:intron | 50.0% | |
| GGTGGTATTCCTTTCCCCTT+TGG | - | chr4.2:41039383-41039402 | MS.gene071173:intron | 50.0% | |
| GGTTCTCCTGGTGAGCTTAA+GGG | + | chr4.2:41037982-41038001 | None:intergenic | 50.0% | |
| GTATTCCTTTCCCCTTTGGC+AGG | - | chr4.2:41039387-41039406 | MS.gene071173:intron | 50.0% | |
| TATGTTACCCCCCTCAAAGG+GGG | - | chr4.2:41037060-41037079 | MS.gene071173:CDS | 50.0% | |
| TTTGGGAACCTCACCTGTCA+CGG | + | chr4.2:41036991-41037010 | None:intergenic | 50.0% | |
| ! | AAATGTACCCCCTTTGAGGG+GGG | + | chr4.2:41037070-41037089 | None:intergenic | 50.0% |
| ! | ACTCTATGCGTGTTGGCATG+AGG | - | chr4.2:41040309-41040328 | MS.gene071173:CDS | 50.0% |
| ! | CTGAAGCACTCTATGCGTGT+TGG | - | chr4.2:41040302-41040321 | MS.gene071173:CDS | 50.0% |
| !! | AGGTTTGCTGAGCTCAACCA+AGG | - | chr4.2:41040329-41040348 | MS.gene071173:CDS | 50.0% |
| !! | CATGAAAGCATCTCTCCACC+AGG | + | chr4.2:41040205-41040224 | None:intergenic | 50.0% |
| AACGGGAAAGGGATAACGCC+AGG | + | chr4.2:41037613-41037632 | None:intergenic | 55.0% | |
| ACGGGAAAGGGATAACGCCA+GGG | + | chr4.2:41037612-41037631 | None:intergenic | 55.0% | |
| ACTAGTCCATGGGCTCGACT+CGG | + | chr4.2:41037471-41037490 | None:intergenic | 55.0% | |
| CGTTATCCCTTTCCCGTTGG+TGG | - | chr4.2:41037615-41037634 | MS.gene071173:intron | 55.0% | |
| CTCCAAATCCGTGACAGGTG+AGG | - | chr4.2:41036980-41036999 | MS.gene071173:CDS | 55.0% | |
| GGGAAAGGAATACCACCAGC+AGG | + | chr4.2:41039380-41039399 | None:intergenic | 55.0% | |
| GGGTTCTCCTGGTGAGCTTA+AGG | + | chr4.2:41037983-41038002 | None:intergenic | 55.0% | |
| GTGAACCTGCCAAAGGGGAA+AGG | + | chr4.2:41039395-41039414 | None:intergenic | 55.0% | |
| TGGCGTTATCCCTTTCCCGT+TGG | - | chr4.2:41037612-41037631 | MS.gene071173:intron | 55.0% | |
| !!! | GATGGAAGGTTTTGGAGGGG+AGG | - | chr4.2:41037776-41037795 | MS.gene071173:intron | 55.0% |
| CTACGGCTTTCACCTGCTGG+TGG | - | chr4.2:41039365-41039384 | MS.gene071173:intron | 60.0% | |
| GTTATGCCGAGTCGAGCCCA+TGG | - | chr4.2:41037462-41037481 | MS.gene071173:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 41036902 | 41040370 | 41036902 | ID=MS.gene071173 |
| chr4.2 | mRNA | 41036902 | 41040370 | 41036902 | ID=MS.gene071173.t1;Parent=MS.gene071173 |
| chr4.2 | exon | 41040276 | 41040370 | 41040276 | ID=MS.gene071173.t1.exon1;Parent=MS.gene071173.t1 |
| chr4.2 | CDS | 41040276 | 41040370 | 41040276 | ID=cds.MS.gene071173.t1;Parent=MS.gene071173.t1 |
| chr4.2 | exon | 41036902 | 41037088 | 41036902 | ID=MS.gene071173.t1.exon2;Parent=MS.gene071173.t1 |
| chr4.2 | CDS | 41036902 | 41037088 | 41036902 | ID=cds.MS.gene071173.t1;Parent=MS.gene071173.t1 |
| Gene Sequence |
| Protein sequence |
