Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071314.t1 | ABN09771.1 | 49.3 | 426 | 51 | 7 | 3 | 266 | 145 | 567 | 4.70E-84 | 321.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071314.t1 | Q9LXT9 | 42.7 | 424 | 78 | 8 | 3 | 266 | 860 | 1278 | 1.6e-69 | 264.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071314.t1 | G7KWP5 | 49.3 | 426 | 51 | 7 | 3 | 266 | 858 | 1280 | 3.4e-84 | 321.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene071314 | 0.852752 | 3.76E-61 | -1.69E-46 |
| MS.gene049435 | MS.gene071314 | 0.800936 | 1.14E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene071314 | 0.810291 | 1.24E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene071314 | 0.867067 | 1.80E-65 | -1.69E-46 |
| MS.gene050586 | MS.gene071314 | 0.807738 | 4.36E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene071314 | 0.826524 | 2.59E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene071314 | 0.806629 | 7.50E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene071314 | 0.804425 | 2.17E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene071314 | 0.815098 | 1.10E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene071314 | 0.814698 | 1.35E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene071314 | 0.81531 | 9.87E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene071314 | 0.809173 | 2.16E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene071314 | 0.812237 | 4.69E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene071314 | 0.832738 | 7.96E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene071314 | 0.806348 | 8.59E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene071314 | 0.824158 | 9.39E-54 | -1.69E-46 |
| MS.gene052612 | MS.gene071314 | 0.803224 | 3.86E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene071314 | 0.827259 | 1.73E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene071314 | 0.811731 | 6.05E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene071314 | 0.805805 | 1.12E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene071314 | 0.810741 | 9.92E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene071314 | 0.806608 | 7.57E-50 | -1.69E-46 |
| MS.gene053621 | MS.gene071314 | 0.802374 | 5.78E-49 | -1.69E-46 |
| MS.gene054697 | MS.gene071314 | 0.812138 | 4.93E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene071314 | 0.807171 | 5.76E-50 | -1.69E-46 |
| MS.gene054801 | MS.gene071314 | 0.806006 | 1.01E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene071314 | 0.800349 | 1.50E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene071314 | 0.822099 | 2.84E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene071314 | 0.822121 | 2.81E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene071314 | 0.804595 | 2.00E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene071314 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene071314 | 0.813893 | 2.03E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene071314 | 0.830985 | 2.16E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene071314 | 0.818996 | 1.46E-52 | -1.69E-46 |
| MS.gene057446 | MS.gene071314 | 0.807188 | 5.71E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene071314 | 0.800168 | 1.64E-48 | -1.69E-46 |
| MS.gene057869 | MS.gene071314 | 0.841739 | 3.96E-58 | -1.69E-46 |
| MS.gene057915 | MS.gene071314 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene071314 | 0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene071314 | 0.820519 | 6.57E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene071314 | 0.824551 | 7.59E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene071314 | 0.809741 | 1.63E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene071314 | 0.804442 | 2.16E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene071314 | 0.807376 | 5.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071314.t1 | MTR_7g005950 | 97.849 | 93 | 2 | 0 | 167 | 259 | 1181 | 1273 | 7.66e-56 | 194 |
| MS.gene071314.t1 | MTR_7g005950 | 59.887 | 177 | 36 | 5 | 3 | 147 | 858 | 1031 | 3.58e-53 | 186 |
| MS.gene071314.t1 | MTR_7g005950 | 97.849 | 93 | 2 | 0 | 167 | 259 | 1181 | 1273 | 9.23e-56 | 194 |
| MS.gene071314.t1 | MTR_7g005950 | 59.887 | 177 | 36 | 5 | 3 | 147 | 858 | 1031 | 4.24e-53 | 186 |
| MS.gene071314.t1 | MTR_1g116370 | 90.000 | 100 | 10 | 0 | 167 | 266 | 1163 | 1262 | 2.21e-54 | 190 |
| MS.gene071314.t1 | MTR_1g116370 | 52.273 | 176 | 47 | 5 | 3 | 147 | 846 | 1015 | 6.20e-40 | 148 |
| MS.gene071314.t1 | MTR_2g061380 | 74.257 | 101 | 25 | 1 | 167 | 266 | 1168 | 1268 | 2.09e-43 | 158 |
| MS.gene071314.t1 | MTR_2g061380 | 43.411 | 129 | 42 | 1 | 3 | 100 | 855 | 983 | 1.59e-21 | 94.7 |
| MS.gene071314.t1 | MTR_8g093630 | 58.163 | 98 | 38 | 2 | 162 | 258 | 1179 | 1274 | 5.28e-28 | 114 |
| MS.gene071314.t1 | MTR_8g093630 | 58.163 | 98 | 38 | 2 | 162 | 258 | 1179 | 1274 | 5.91e-28 | 113 |
| MS.gene071314.t1 | MTR_3g096200 | 55.102 | 98 | 41 | 2 | 162 | 258 | 1169 | 1264 | 1.17e-26 | 109 |
| MS.gene071314.t1 | MTR_2g072160 | 49.091 | 110 | 48 | 2 | 149 | 258 | 1183 | 1284 | 2.15e-26 | 108 |
| MS.gene071314.t1 | MTR_3g047390 | 38.095 | 126 | 65 | 4 | 157 | 278 | 1144 | 1260 | 3.51e-13 | 70.1 |
| MS.gene071314.t1 | MTR_2g090375 | 38.261 | 115 | 53 | 4 | 157 | 256 | 976 | 1087 | 3.44e-12 | 67.0 |
| MS.gene071314.t1 | MTR_1g116470 | 47.253 | 91 | 45 | 2 | 167 | 257 | 1149 | 1236 | 4.85e-12 | 66.6 |
| MS.gene071314.t1 | MTR_1g116470 | 47.253 | 91 | 45 | 2 | 167 | 257 | 1144 | 1231 | 5.08e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071314.t1 | AT5G13000 | 84.314 | 102 | 15 | 1 | 167 | 267 | 1178 | 1279 | 4.00e-51 | 181 |
| MS.gene071314.t1 | AT5G13000 | 49.432 | 176 | 53 | 4 | 3 | 147 | 860 | 1030 | 4.56e-40 | 149 |
| MS.gene071314.t1 | AT5G13000 | 84.314 | 102 | 15 | 1 | 167 | 267 | 1176 | 1277 | 4.65e-51 | 180 |
| MS.gene071314.t1 | AT5G13000 | 49.432 | 176 | 53 | 4 | 3 | 147 | 860 | 1030 | 4.50e-40 | 149 |
| MS.gene071314.t1 | AT2G31960 | 73.000 | 100 | 26 | 1 | 167 | 265 | 1128 | 1227 | 4.09e-40 | 149 |
| MS.gene071314.t1 | AT2G31960 | 51.128 | 133 | 33 | 3 | 3 | 104 | 813 | 944 | 1.46e-31 | 124 |
| MS.gene071314.t1 | AT2G31960 | 73.000 | 100 | 26 | 1 | 167 | 265 | 1169 | 1268 | 4.10e-40 | 149 |
| MS.gene071314.t1 | AT2G31960 | 51.128 | 133 | 33 | 3 | 3 | 104 | 854 | 985 | 1.48e-31 | 124 |
| MS.gene071314.t1 | AT2G31960 | 73.000 | 100 | 26 | 1 | 167 | 265 | 1169 | 1268 | 4.10e-40 | 149 |
| MS.gene071314.t1 | AT2G31960 | 51.128 | 133 | 33 | 3 | 3 | 104 | 854 | 985 | 1.48e-31 | 124 |
| MS.gene071314.t1 | AT2G31960 | 73.000 | 100 | 26 | 1 | 167 | 265 | 1169 | 1268 | 4.10e-40 | 149 |
| MS.gene071314.t1 | AT2G31960 | 51.128 | 133 | 33 | 3 | 3 | 104 | 854 | 985 | 1.48e-31 | 124 |
| MS.gene071314.t1 | AT2G31960 | 73.000 | 100 | 26 | 1 | 167 | 265 | 1169 | 1268 | 4.10e-40 | 149 |
| MS.gene071314.t1 | AT2G31960 | 51.128 | 133 | 33 | 3 | 3 | 104 | 854 | 985 | 1.48e-31 | 124 |
| MS.gene071314.t1 | AT1G05570 | 68.932 | 103 | 31 | 1 | 167 | 268 | 1169 | 1271 | 5.19e-39 | 145 |
| MS.gene071314.t1 | AT1G05570 | 49.242 | 132 | 36 | 2 | 3 | 103 | 854 | 985 | 2.66e-30 | 120 |
| MS.gene071314.t1 | AT1G05570 | 68.932 | 103 | 31 | 1 | 167 | 268 | 1169 | 1271 | 5.19e-39 | 145 |
| MS.gene071314.t1 | AT1G05570 | 49.242 | 132 | 36 | 2 | 3 | 103 | 854 | 985 | 2.66e-30 | 120 |
| MS.gene071314.t1 | AT1G05570 | 68.932 | 103 | 31 | 1 | 167 | 268 | 1169 | 1271 | 5.19e-39 | 145 |
| MS.gene071314.t1 | AT1G05570 | 49.242 | 132 | 36 | 2 | 3 | 103 | 854 | 985 | 2.66e-30 | 120 |
| MS.gene071314.t1 | AT1G05570 | 68.932 | 103 | 31 | 1 | 167 | 268 | 1128 | 1230 | 5.92e-39 | 145 |
| MS.gene071314.t1 | AT1G05570 | 49.242 | 132 | 36 | 2 | 3 | 103 | 813 | 944 | 2.97e-30 | 120 |
| MS.gene071314.t1 | AT5G36870 | 58.772 | 114 | 40 | 2 | 157 | 270 | 1098 | 1204 | 2.75e-30 | 120 |
| MS.gene071314.t1 | AT5G36870 | 58.772 | 114 | 40 | 2 | 157 | 270 | 1097 | 1203 | 2.77e-30 | 120 |
| MS.gene071314.t1 | AT5G36870 | 58.772 | 114 | 40 | 2 | 157 | 270 | 1090 | 1196 | 2.96e-30 | 120 |
| MS.gene071314.t1 | AT5G36870 | 58.772 | 114 | 40 | 2 | 157 | 270 | 1090 | 1196 | 2.96e-30 | 120 |
| MS.gene071314.t1 | AT5G36870 | 60.550 | 109 | 37 | 2 | 162 | 270 | 1094 | 1196 | 3.17e-30 | 120 |
| MS.gene071314.t1 | AT2G13680 | 51.562 | 128 | 47 | 4 | 135 | 258 | 1137 | 1253 | 1.75e-29 | 118 |
| MS.gene071314.t1 | AT3G14570 | 58.000 | 100 | 36 | 1 | 167 | 266 | 1210 | 1303 | 1.62e-28 | 115 |
| MS.gene071314.t1 | AT3G14570 | 58.000 | 100 | 36 | 1 | 167 | 266 | 1226 | 1319 | 1.71e-28 | 115 |
| MS.gene071314.t1 | AT3G14570 | 58.000 | 100 | 36 | 1 | 167 | 266 | 1200 | 1293 | 1.72e-28 | 115 |
| MS.gene071314.t1 | AT3G59100 | 43.750 | 96 | 47 | 2 | 167 | 258 | 860 | 952 | 8.21e-17 | 80.9 |
| MS.gene071314.t1 | AT3G59100 | 43.750 | 96 | 47 | 2 | 167 | 258 | 1157 | 1249 | 8.62e-17 | 80.9 |
| MS.gene071314.t1 | AT1G06490 | 41.748 | 103 | 53 | 2 | 168 | 266 | 1170 | 1269 | 9.65e-16 | 77.8 |
| MS.gene071314.t1 | AT1G06490 | 41.748 | 103 | 53 | 2 | 168 | 266 | 1170 | 1269 | 9.94e-16 | 77.8 |
Find 0 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATACTACTATTTTTTAT+GGG | - | 50682:8070-8089 | MS.gene071314:intergenic | 10.0% |
| !!! | TTAATATTTTTTAGTTATTG+TGG | + | 50682:8144-8163 | MS.gene071314:intron | 10.0% |
| !! | ATTATTGCATTAATAACTAT+TGG | + | 50682:8704-8723 | MS.gene071314:intron | 15.0% |
| !!! | CAAAATACTACTATTTTTTA+TGG | - | 50682:8071-8090 | MS.gene071314:intergenic | 15.0% |
| !! | ACAAAGTTAAAACATGAATT+AGG | - | 50682:6848-6867 | MS.gene071314:intergenic | 20.0% |
| !! | ACTAAATGATTCAATAGAAA+CGG | - | 50682:6430-6449 | MS.gene071314:intergenic | 20.0% |
| !! | GTTATAGTCGATAAATTTAA+TGG | + | 50682:7862-7881 | MS.gene071314:intron | 20.0% |
| !! | GTTCTTGTCTATTATAATAA+TGG | + | 50682:9184-9203 | MS.gene071314:intron | 20.0% |
| !! | TGCAATAATAAGCTATATTA+TGG | - | 50682:8693-8712 | MS.gene071314:intergenic | 20.0% |
| !! | TGCATAAAATTCCAATAATT+GGG | - | 50682:7079-7098 | MS.gene071314:intergenic | 20.0% |
| !!! | AACAATTAGATATTTTCTTG+GGG | + | 50682:7951-7970 | MS.gene071314:intron | 20.0% |
| !!! | ACTTAGTTTCAATTTGTTTT+GGG | + | 50682:7485-7504 | MS.gene071314:intron | 20.0% |
| !!! | CAACAATTAGATATTTTCTT+GGG | + | 50682:7950-7969 | MS.gene071314:intron | 20.0% |
| !!! | TCAACAATTAGATATTTTCT+TGG | + | 50682:7949-7968 | MS.gene071314:intron | 20.0% |
| !!! | TTGATTTAGTTCTTTATAGA+AGG | + | 50682:6658-6677 | MS.gene071314:intron | 20.0% |
| ! | AAATAACAAATACCAACTCT+CGG | - | 50682:8099-8118 | MS.gene071314:intergenic | 25.0% |
| ! | CTGCATAAAATTCCAATAAT+TGG | - | 50682:7080-7099 | MS.gene071314:intergenic | 25.0% |
| ! | GCATAAAATTCCAATAATTG+GGG | - | 50682:7078-7097 | MS.gene071314:intergenic | 25.0% |
| ! | GCTTCACTAATTAAACTTAA+AGG | - | 50682:7455-7474 | MS.gene071314:intergenic | 25.0% |
| ! | GGATAATAATCAGAAAGATA+GGG | + | 50682:7102-7121 | MS.gene071314:CDS | 25.0% |
| ! | TAAATTAACATACAGCTTGA+AGG | + | 50682:8874-8893 | MS.gene071314:intron | 25.0% |
| ! | TAAATTTCAACAGGAAAACA+AGG | - | 50682:7696-7715 | MS.gene071314:intergenic | 25.0% |
| ! | TATATAGCTCCAAATGTTAA+CGG | + | 50682:6730-6749 | MS.gene071314:intron | 25.0% |
| ! | TATTTGCAAAAGATATTTCC+AGG | + | 50682:8269-8288 | MS.gene071314:intron | 25.0% |
| ! | TCCTGTTGAAATTTATGAAT+CGG | + | 50682:7701-7720 | MS.gene071314:intron | 25.0% |
| ! | TGATGTATTATAGAAAAGCT+TGG | + | 50682:8741-8760 | MS.gene071314:intron | 25.0% |
| ! | TGGATAATAATCAGAAAGAT+AGG | + | 50682:7101-7120 | MS.gene071314:CDS | 25.0% |
| ! | TGTTCAGCTAATCAAATATT+TGG | + | 50682:6986-7005 | MS.gene071314:CDS | 25.0% |
| !! | ACAATTAGATATTTTCTTGG+GGG | + | 50682:7952-7971 | MS.gene071314:intron | 25.0% |
| !! | AGCGTTTATTATTTCCATTT+TGG | + | 50682:8354-8373 | MS.gene071314:intron | 25.0% |
| !! | TTATTGGAATTTTATGCAGT+TGG | + | 50682:7081-7100 | MS.gene071314:intron | 25.0% |
| !! | TTTTTCGCATTCAATGATAT+AGG | + | 50682:6791-6810 | MS.gene071314:intron | 25.0% |
| !!! | CAATATTAGTTCTTCAGTTT+TGG | + | 50682:7810-7829 | MS.gene071314:intron | 25.0% |
| !!! | CTTTTCTTACTGTTTTTGAT+AGG | - | 50682:9276-9295 | MS.gene071314:intergenic | 25.0% |
| !!! | GACTTAGTTTCAATTTGTTT+TGG | + | 50682:7484-7503 | MS.gene071314:intron | 25.0% |
| !!! | TAATAGTACATTGATAACGA+AGG | - | 50682:8856-8875 | MS.gene071314:intergenic | 25.0% |
| !!! | TATTGTGGATTTTGTTTGTA+GGG | + | 50682:8159-8178 | MS.gene071314:intron | 25.0% |
| !!! | TTATTGTGGATTTTGTTTGT+AGG | + | 50682:8158-8177 | MS.gene071314:intron | 25.0% |
| AACAGTAAGAAAAGATCACA+AGG | + | 50682:9282-9301 | MS.gene071314:CDS | 30.0% | |
| AATAACTATTGGTGCAGTAA+GGG | + | 50682:8715-8734 | MS.gene071314:intron | 30.0% | |
| AATTGCATTAGATATGGCAA+AGG | + | 50682:6483-6502 | MS.gene071314:CDS | 30.0% | |
| AGTATGATAGATTCAAGTCA+TGG | + | 50682:7289-7308 | MS.gene071314:intron | 30.0% | |
| ATATAGCTCCAAATGTTAAC+GGG | + | 50682:6731-6750 | MS.gene071314:intron | 30.0% | |
| ATTCAATGATTCCTAAGAGA+AGG | - | 50682:8812-8831 | MS.gene071314:intergenic | 30.0% | |
| CTGCCAAATGAAAATATACA+AGG | - | 50682:9210-9229 | MS.gene071314:intergenic | 30.0% | |
| CTGTAATCACGAGAATATTA+GGG | - | 50682:7751-7770 | MS.gene071314:intergenic | 30.0% | |
| CTTCTCAAATTCACTGTTTA+TGG | + | 50682:7597-7616 | MS.gene071314:intron | 30.0% | |
| GAAAACAAGGCATATGATTA+GGG | - | 50682:7683-7702 | MS.gene071314:intergenic | 30.0% | |
| TAATAACTATTGGTGCAGTA+AGG | + | 50682:8714-8733 | MS.gene071314:intron | 30.0% | |
| TCATTTAGTAATTCTGTCTG+TGG | + | 50682:6441-6460 | MS.gene071314:intron | 30.0% | |
| TCTGTAATCACGAGAATATT+AGG | - | 50682:7752-7771 | MS.gene071314:intergenic | 30.0% | |
| TGTGACAAGAGATATAATGA+TGG | + | 50682:7162-7181 | MS.gene071314:CDS | 30.0% | |
| TTAAAGTCTTCCCCAATTAT+TGG | + | 50682:7065-7084 | MS.gene071314:intron | 30.0% | |
| TTCTCTTAGGAATCATTGAA+TGG | + | 50682:8811-8830 | MS.gene071314:intron | 30.0% | |
| TTGCCATATCTAATGCAATT+GGG | - | 50682:6483-6502 | MS.gene071314:intergenic | 30.0% | |
| TTTGCCATATCTAATGCAAT+TGG | - | 50682:6484-6503 | MS.gene071314:intergenic | 30.0% | |
| ! | ACCGATTCATAAATTTCAAC+AGG | - | 50682:7705-7724 | MS.gene071314:intergenic | 30.0% |
| ! | GTCTATTTTACCATTGTGAA+AGG | + | 50682:7884-7903 | MS.gene071314:intron | 30.0% |
| ! | GTTAACATTTGGAGCTATAT+AGG | - | 50682:6731-6750 | MS.gene071314:intergenic | 30.0% |
| ! | TTTTGCTTAACCGTTATGAA+TGG | + | 50682:8901-8920 | MS.gene071314:intron | 30.0% |
| !! | ATTGTGGATTTTGTTTGTAG+GGG | + | 50682:8160-8179 | MS.gene071314:intron | 30.0% |
| !! | TAAGAGCATTATTATGCACT+TGG | + | 50682:6595-6614 | MS.gene071314:intron | 30.0% |
| !!! | TGGCCTTGTATATTTTCATT+TGG | + | 50682:9204-9223 | MS.gene071314:intron | 30.0% |
| AAAACTCAGATGATAACTCG+CGG | + | 50682:8955-8974 | MS.gene071314:CDS | 35.0% | |
| AAGCTATATTATGGACTTCG+AGG | - | 50682:8684-8703 | MS.gene071314:intergenic | 35.0% | |
| ACATATTGAGGCTTATGACT+AGG | + | 50682:9093-9112 | MS.gene071314:CDS | 35.0% | |
| AGAATATTAGCTGTTACCCA+TGG | + | 50682:7985-8004 | MS.gene071314:intron | 35.0% | |
| AGAGCTGACAAAAAGAATTG+AGG | + | 50682:6525-6544 | MS.gene071314:CDS | 35.0% | |
| ATAACTATTGGTGCAGTAAG+GGG | + | 50682:8716-8735 | MS.gene071314:intron | 35.0% | |
| ATATAGGCAACTCTAAGTGA+AGG | - | 50682:9237-9256 | MS.gene071314:intergenic | 35.0% | |
| ATATGATTCAACCATGATCG+AGG | - | 50682:7257-7276 | MS.gene071314:intergenic | 35.0% | |
| ATCACGAGAATATTAGGGAA+AGG | - | 50682:7746-7765 | MS.gene071314:intergenic | 35.0% | |
| ATCGAAACACCATCTTCATT+TGG | - | 50682:8242-8261 | MS.gene071314:intergenic | 35.0% | |
| ATGATAGATTCAAGTCATGG+TGG | + | 50682:7292-7311 | MS.gene071314:CDS | 35.0% | |
| CAAACAGATTCAAGCAACTA+CGG | - | 50682:6641-6660 | MS.gene071314:intergenic | 35.0% | |
| CATTATGTTTCTCTTCAGAG+GGG | + | 50682:7041-7060 | MS.gene071314:intron | 35.0% | |
| CTATATGACTGTCTACTTCA+CGG | - | 50682:6906-6925 | MS.gene071314:intergenic | 35.0% | |
| CTGTGCATCAATAACCAAAA+TGG | - | 50682:8371-8390 | MS.gene071314:intergenic | 35.0% | |
| CTTCTAACTTAGAAGCAAGA+AGG | + | 50682:7563-7582 | MS.gene071314:intron | 35.0% | |
| CTTCTTGCTTCTAAGTTAGA+AGG | - | 50682:7565-7584 | MS.gene071314:intergenic | 35.0% | |
| GAATATGCAGTGGAAACATA+AGG | - | 50682:7223-7242 | MS.gene071314:intergenic | 35.0% | |
| GATCCCAATTGCATTAGATA+TGG | + | 50682:6477-6496 | MS.gene071314:intron | 35.0% | |
| GCATTATGTTTCTCTTCAGA+GGG | + | 50682:7040-7059 | MS.gene071314:intron | 35.0% | |
| GCTGCAATAATTTCATCAAG+AGG | - | 50682:6767-6786 | MS.gene071314:intergenic | 35.0% | |
| GGAAAACAAGGCATATGATT+AGG | - | 50682:7684-7703 | MS.gene071314:intergenic | 35.0% | |
| GTTGTATCATGCCAACAATA+TGG | + | 50682:9035-9054 | MS.gene071314:CDS | 35.0% | |
| TAAATGAAGCATAGCACTCA+CGG | - | 50682:6577-6596 | MS.gene071314:intergenic | 35.0% | |
| TAACACATACTACACAGAAG+AGG | + | 50682:8186-8205 | MS.gene071314:CDS | 35.0% | |
| TAATCAGAAAGATAGGGATC+AGG | + | 50682:7108-7127 | MS.gene071314:CDS | 35.0% | |
| TAGAGTTGCCTATATTGATG+AGG | + | 50682:9242-9261 | MS.gene071314:CDS | 35.0% | |
| TATAGGCAACTCTAAGTGAA+GGG | - | 50682:9236-9255 | MS.gene071314:intergenic | 35.0% | |
| TCAAATCTGGCCATTCATAA+CGG | - | 50682:8914-8933 | MS.gene071314:intergenic | 35.0% | |
| TGAAGTAGACAGTCATATAG+AGG | + | 50682:6906-6925 | MS.gene071314:intron | 35.0% | |
| TGCATTATGTTTCTCTTCAG+AGG | + | 50682:7039-7058 | MS.gene071314:intron | 35.0% | |
| TTACTACTCTTGCTTAGTGA+AGG | + | 50682:9306-9325 | MS.gene071314:CDS | 35.0% | |
| TTATGAATGGCCAGATTTGA+TGG | + | 50682:8914-8933 | MS.gene071314:intron | 35.0% | |
| ! | ATTATTATGCACTTGGTTCG+AGG | + | 50682:6602-6621 | MS.gene071314:intron | 35.0% |
| ! | GTTATCATCTGAGTTTTCCA+TGG | - | 50682:8952-8971 | MS.gene071314:intergenic | 35.0% |
| ! | GTTTTACATTTATGCAGCAG+AGG | - | 50682:8313-8332 | MS.gene071314:intergenic | 35.0% |
| ! | TAAGTTAGAAGGTACATCCA+TGG | - | 50682:7554-7573 | MS.gene071314:intergenic | 35.0% |
| ! | TCAGGTTGTTATTCTATTCC+AGG | + | 50682:7126-7145 | MS.gene071314:CDS | 35.0% |
| ! | TTTAAGTTAGACACGTCCAT+GGG | - | 50682:8004-8023 | MS.gene071314:intergenic | 35.0% |
| !! | AAGAGATATAATGATGGACG+AGG | + | 50682:7168-7187 | MS.gene071314:CDS | 35.0% |
| !! | TTTTAGTTGTCAGCTTGAGA+TGG | + | 50682:8038-8057 | MS.gene071314:intron | 35.0% |
| !!! | GAACTGAGTAGTTTTAGACT+TGG | + | 50682:9124-9143 | MS.gene071314:intron | 35.0% |
| !!! | TTTTAAGTTAGACACGTCCA+TGG | - | 50682:8005-8024 | MS.gene071314:intergenic | 35.0% |
| AAACCTTGCTAGCAGTAACA+AGG | - | 50682:6376-6395 | MS.gene071314:intergenic | 40.0% | |
| AAACTCAGATGATAACTCGC+GGG | + | 50682:8956-8975 | MS.gene071314:CDS | 40.0% | |
| AAATGAAGCATAGCACTCAC+GGG | - | 50682:6576-6595 | MS.gene071314:intergenic | 40.0% | |
| AAATGTTAACGGGACTTTCG+GGG | + | 50682:6741-6760 | MS.gene071314:intron | 40.0% | |
| AACCTTGCTAGCAGTAACAA+GGG | - | 50682:6375-6394 | MS.gene071314:intergenic | 40.0% | |
| ACAAACTGTCCATAGAGACT+AGG | - | 50682:6969-6988 | MS.gene071314:intergenic | 40.0% | |
| ACATTTATGCAGCAGAGGTT+TGG | - | 50682:8308-8327 | MS.gene071314:intergenic | 40.0% | |
| AGAAGAAGAGCTTCGTCTAT+GGG | + | 50682:8467-8486 | MS.gene071314:intron | 40.0% | |
| AGTTGCCTATATTGATGAGG+TGG | + | 50682:9245-9264 | MS.gene071314:CDS | 40.0% | |
| ATAGAAAAGCTTGGAGCTTC+AGG | + | 50682:8750-8769 | MS.gene071314:intron | 40.0% | |
| ATTGAGGCTTATGACTAGGT+AGG | + | 50682:9097-9116 | MS.gene071314:intron | 40.0% | |
| ATTTATGCAGCAGAGGTTTG+GGG | - | 50682:8306-8325 | MS.gene071314:intergenic | 40.0% | |
| ATTTCATATCAGCTACCGCT+TGG | - | 50682:9007-9026 | MS.gene071314:intergenic | 40.0% | |
| CAAATGTTAACGGGACTTTC+GGG | + | 50682:6740-6759 | MS.gene071314:intron | 40.0% | |
| CATTTATGCAGCAGAGGTTT+GGG | - | 50682:8307-8326 | MS.gene071314:intergenic | 40.0% | |
| CCAAATGTTAACGGGACTTT+CGG | + | 50682:6739-6758 | MS.gene071314:intron | 40.0% | |
| CTTCATCTTTGGCCATATCA+AGG | - | 50682:8780-8799 | MS.gene071314:intergenic | 40.0% | |
| CTTGATATGGCCAAAGATGA+AGG | + | 50682:8778-8797 | MS.gene071314:CDS | 40.0% | |
| GACAACAAAAGAATCTGCCA+TGG | + | 50682:7534-7553 | MS.gene071314:intron | 40.0% | |
| GATATGGCAAAGGACAGTAA+TGG | + | 50682:6493-6512 | MS.gene071314:CDS | 40.0% | |
| GCTTGTCAATGCCATATTGT+TGG | - | 50682:9049-9068 | MS.gene071314:intergenic | 40.0% | |
| GTCTATGGGCATCATATAGA+GGG | + | 50682:8481-8500 | MS.gene071314:intron | 40.0% | |
| GTTATTGATGCACAGATGAG+TGG | + | 50682:8376-8395 | MS.gene071314:intron | 40.0% | |
| TAGAAGAAGAGCTTCGTCTA+TGG | + | 50682:8466-8485 | MS.gene071314:intron | 40.0% | |
| TATTCTATTCCAGGACATGC+TGG | + | 50682:7135-7154 | MS.gene071314:CDS | 40.0% | |
| TGGACGAGGAACAAATATTC+AGG | + | 50682:7182-7201 | MS.gene071314:CDS | 40.0% | |
| TTCCTCCACCTCATCAATAT+AGG | - | 50682:9253-9272 | MS.gene071314:intergenic | 40.0% | |
| TTGTAGCCTTCCATCAAATC+TGG | - | 50682:8927-8946 | MS.gene071314:intergenic | 40.0% | |
| ! | TTTGGGGTTAATGATGAACC+TGG | - | 50682:8290-8309 | MS.gene071314:intergenic | 40.0% |
| !! | GAAAGCATGTTGCGAACTTT+TGG | - | 50682:7637-7656 | MS.gene071314:intergenic | 40.0% |
| !!! | TATTTTGATGCACCGAGAGT+TGG | + | 50682:8084-8103 | MS.gene071314:intron | 40.0% |
| AACTCAGATGATAACTCGCG+GGG | + | 50682:8957-8976 | MS.gene071314:CDS | 45.0% | |
| ACCAGCTATTGCATCTGAAG+GGG | + | 50682:7358-7377 | MS.gene071314:CDS | 45.0% | |
| ACCTTGCTAGCAGTAACAAG+GGG | - | 50682:6374-6393 | MS.gene071314:intergenic | 45.0% | |
| ACTGTCTACTTCACGGAACA+TGG | - | 50682:6899-6918 | MS.gene071314:intergenic | 45.0% | |
| ACTGTTTATGGACATGCCTG+TGG | + | 50682:7609-7628 | MS.gene071314:intron | 45.0% | |
| AGAGGCAGGCACACTAATAA+AGG | + | 50682:6924-6943 | MS.gene071314:CDS | 45.0% | |
| AGGTGACTGTTCCTTCTCTT+AGG | + | 50682:8798-8817 | MS.gene071314:intron | 45.0% | |
| AGTGCTCTTCCTAGTCTCTA+TGG | + | 50682:6957-6976 | MS.gene071314:CDS | 45.0% | |
| ATTATGGACACAGTGCCAAG+CGG | + | 50682:8989-9008 | MS.gene071314:CDS | 45.0% | |
| ATTCAACCATGATCGAGGAG+AGG | - | 50682:7252-7271 | MS.gene071314:intergenic | 45.0% | |
| CACCAGCTATTGCATCTGAA+GGG | + | 50682:7357-7376 | MS.gene071314:CDS | 45.0% | |
| CAGAAGAGGTTCTCTTCTCA+TGG | + | 50682:8200-8219 | MS.gene071314:intron | 45.0% | |
| CCGAAAGTCCCGTTAACATT+TGG | - | 50682:6742-6761 | MS.gene071314:intergenic | 45.0% | |
| CGTCTATGGGCATCATATAG+AGG | + | 50682:8480-8499 | MS.gene071314:intron | 45.0% | |
| CTCTTCTCATGGCATGAATC+TGG | + | 50682:8211-8230 | MS.gene071314:intron | 45.0% | |
| CTGGATTCGCCAAATGAAGA+TGG | + | 50682:8230-8249 | MS.gene071314:intron | 45.0% | |
| GAATGGCCAGATTTGATGGA+AGG | + | 50682:8918-8937 | MS.gene071314:intron | 45.0% | |
| GAGGAAGGAAGAATATGCAG+TGG | - | 50682:7233-7252 | MS.gene071314:intergenic | 45.0% | |
| GCTTCAGGCTTTCCTTGATA+TGG | + | 50682:8765-8784 | MS.gene071314:CDS | 45.0% | |
| GGAACAGTCACCTTCATCTT+TGG | - | 50682:8791-8810 | MS.gene071314:intergenic | 45.0% | |
| GTAGACAGTCATATAGAGGC+AGG | + | 50682:6910-6929 | MS.gene071314:intron | 45.0% | |
| GTGTAGCATGCCTTTCACAA+TGG | - | 50682:7897-7916 | MS.gene071314:intergenic | 45.0% | |
| TAGTTGTCAGCTTGAGATGG+TGG | + | 50682:8041-8060 | MS.gene071314:intron | 45.0% | |
| TCACCAGCTATTGCATCTGA+AGG | + | 50682:7356-7375 | MS.gene071314:CDS | 45.0% | |
| TCTAGCGAGGAGGAACTTAA+AGG | + | 50682:8426-8445 | MS.gene071314:intron | 45.0% | |
| TGCCTATATTGATGAGGTGG+AGG | + | 50682:9248-9267 | MS.gene071314:CDS | 45.0% | |
| ! | AGATGCAATAGCTGGTGATG+TGG | - | 50682:7354-7373 | MS.gene071314:intergenic | 45.0% |
| ! | GATTCAAGTCATGGTGGTGT+TGG | + | 50682:7298-7317 | MS.gene071314:CDS | 45.0% |
| ! | GGCAAAGGACAGTAATGGAA+AGG | + | 50682:6498-6517 | MS.gene071314:CDS | 45.0% |
| !! | TATGGCATTGACAAGCGATC+TGG | + | 50682:9053-9072 | MS.gene071314:CDS | 45.0% |
| AACCATGATCGAGGAGAGGA+AGG | - | 50682:7248-7267 | MS.gene071314:intergenic | 50.0% | |
| ACTCAGATGATAACTCGCGG+GGG | + | 50682:8958-8977 | MS.gene071314:CDS | 50.0% | |
| AGGGCAGACTTGACAAGAAC+TGG | + | 50682:8500-8519 | MS.gene071314:intron | 50.0% | |
| CCTTGCTAGCAGTAACAAGG+GGG | - | 50682:6373-6392 | MS.gene071314:intergenic | 50.0% | |
| CTTGCTAGCAGTAACAAGGG+GGG | - | 50682:6372-6391 | MS.gene071314:intergenic | 50.0% | |
| GATGGAAGGCTACAAAGCCA+TGG | + | 50682:8932-8951 | MS.gene071314:CDS | 50.0% | |
| TCACAACTTCCAGCATGTCC+TGG | - | 50682:7147-7166 | MS.gene071314:intergenic | 50.0% | |
| TGTGTCCGCAAGTGTGTAGT+GGG | - | 50682:8575-8594 | MS.gene071314:intergenic | 50.0% | |
| TTCCTTCCTCTCCTCGATCA+TGG | + | 50682:7243-7262 | MS.gene071314:intron | 50.0% | |
| TTGAACCAGTCACAGCAGCT+TGG | + | 50682:7396-7415 | MS.gene071314:CDS | 50.0% | |
| ! | AATAGCTGGTGATGTGGCTC+AGG | - | 50682:7348-7367 | MS.gene071314:intergenic | 50.0% |
| ! | AGTGAAGTGTTCTAGCGAGG+AGG | + | 50682:8416-8435 | MS.gene071314:intron | 50.0% |
| ! | GCTGCTGTGACTGGTTCAAT+TGG | - | 50682:7395-7414 | MS.gene071314:intergenic | 50.0% |
| ! | TGCACTTGGTTCGAGGAGAA+CGG | + | 50682:6609-6628 | MS.gene071314:intron | 50.0% |
| !!! | TTGCGAACTTTTGGTGCCAC+AGG | - | 50682:7628-7647 | MS.gene071314:intergenic | 50.0% |
| ATGATAACTCGCGGGGGGAA+AGG | + | 50682:8964-8983 | MS.gene071314:CDS | 55.0% | |
| CACAGCAGCTTGGACAGAGA+AGG | + | 50682:7406-7425 | MS.gene071314:CDS | 55.0% | |
| CCCCCTTGTTACTGCTAGCA+AGG | + | 50682:6370-6389 | MS.gene071314:CDS | 55.0% | |
| CCTCAATATGTCCTGTGCCC+GGG | - | 50682:9084-9103 | MS.gene071314:intergenic | 55.0% | |
| CTCAATATGTCCTGTGCCCG+GGG | - | 50682:9083-9102 | MS.gene071314:intergenic | 55.0% | |
| CTCAGATGATAACTCGCGGG+GGG | + | 50682:8959-8978 | MS.gene071314:CDS | 55.0% | |
| GCCCCTTCAGATGCAATAGC+TGG | - | 50682:7362-7381 | MS.gene071314:intergenic | 55.0% | |
| GCCTCAATATGTCCTGTGCC+CGG | - | 50682:9085-9104 | MS.gene071314:intergenic | 55.0% | |
| GTGATGTGGCTCAGGCTCAA+GGG | - | 50682:7340-7359 | MS.gene071314:intergenic | 55.0% | |
| GTGTCCGCAAGTGTGTAGTG+GGG | - | 50682:8574-8593 | MS.gene071314:intergenic | 55.0% | |
| GTGTGTCCGCAAGTGTGTAG+TGG | - | 50682:8576-8595 | MS.gene071314:intergenic | 55.0% | |
| TCTGTCCAAGCTGCTGTGAC+TGG | - | 50682:7404-7423 | MS.gene071314:intergenic | 55.0% | |
| TGATGTGGCTCAGGCTCAAG+GGG | - | 50682:7339-7358 | MS.gene071314:intergenic | 55.0% | |
| ! | AAGTGTGTAGTGGGGAGGGA+GGG | - | 50682:8566-8585 | MS.gene071314:intergenic | 55.0% |
| ! | CATGGTGGTGTTGGACACGA+GGG | + | 50682:7307-7326 | MS.gene071314:CDS | 55.0% |
| ! | GCACTTGGTTCGAGGAGAAC+GGG | + | 50682:6610-6629 | MS.gene071314:intron | 55.0% |
| ! | GCGAGTGAAGTGTTCTAGCG+AGG | + | 50682:8413-8432 | MS.gene071314:intron | 55.0% |
| ! | TCATGGTGGTGTTGGACACG+AGG | + | 50682:7306-7325 | MS.gene071314:CDS | 55.0% |
| !! | ACAAGCGATCTGGTTCTCCC+CGG | + | 50682:9063-9082 | MS.gene071314:CDS | 55.0% |
| CCCGGGCACAGGACATATTG+AGG | + | 50682:9081-9100 | MS.gene071314:CDS | 60.0% | |
| CCCTCCCCACTACACACTTG+CGG | + | 50682:8567-8586 | MS.gene071314:intron | 60.0% | |
| CGCGGGGGGAAAGGTCATTA+TGG | + | 50682:8973-8992 | MS.gene071314:CDS | 60.0% | |
| GGTGATGTGGCTCAGGCTCA+AGG | - | 50682:7341-7360 | MS.gene071314:intergenic | 60.0% | |
| ! | CAAGTGTGTAGTGGGGAGGG+AGG | - | 50682:8567-8586 | MS.gene071314:intergenic | 60.0% |
| ! | CCGCAAGTGTGTAGTGGGGA+GGG | - | 50682:8570-8589 | MS.gene071314:intergenic | 60.0% |
| ! | TCCGCAAGTGTGTAGTGGGG+AGG | - | 50682:8571-8590 | MS.gene071314:intergenic | 60.0% |
| !! | CAAGCGATCTGGTTCTCCCC+GGG | + | 50682:9064-9083 | MS.gene071314:CDS | 60.0% |
| ! | GTGTAGTGGGGAGGGAGGGA+GGG | - | 50682:8562-8581 | MS.gene071314:intergenic | 65.0% |
| ! | TGTGTAGTGGGGAGGGAGGG+AGG | - | 50682:8563-8582 | MS.gene071314:intergenic | 65.0% |
| !! | ATCTGGTTCTCCCCGGGCAC+AGG | + | 50682:9070-9089 | MS.gene071314:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50682 | gene | 6365 | 9347 | 6365 | ID=MS.gene071314 |
| 50682 | mRNA | 6365 | 9347 | 6365 | ID=MS.gene071314.t1;Parent=MS.gene071314 |
| 50682 | exon | 6365 | 6391 | 6365 | ID=MS.gene071314.t1.exon1;Parent=MS.gene071314.t1 |
| 50682 | CDS | 6365 | 6391 | 6365 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 6478 | 6575 | 6478 | ID=MS.gene071314.t1.exon2;Parent=MS.gene071314.t1 |
| 50682 | CDS | 6478 | 6575 | 6478 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 6914 | 7007 | 6914 | ID=MS.gene071314.t1.exon3;Parent=MS.gene071314.t1 |
| 50682 | CDS | 6914 | 7007 | 6914 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 7100 | 7213 | 7100 | ID=MS.gene071314.t1.exon4;Parent=MS.gene071314.t1 |
| 50682 | CDS | 7100 | 7213 | 7100 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 7291 | 7427 | 7291 | ID=MS.gene071314.t1.exon5;Parent=MS.gene071314.t1 |
| 50682 | CDS | 7291 | 7427 | 7291 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 8180 | 8207 | 8180 | ID=MS.gene071314.t1.exon6;Parent=MS.gene071314.t1 |
| 50682 | CDS | 8180 | 8207 | 8180 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 8754 | 8799 | 8754 | ID=MS.gene071314.t1.exon7;Parent=MS.gene071314.t1 |
| 50682 | CDS | 8754 | 8799 | 8754 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 8928 | 9114 | 8928 | ID=MS.gene071314.t1.exon8;Parent=MS.gene071314.t1 |
| 50682 | CDS | 8928 | 9114 | 8928 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| 50682 | exon | 9230 | 9347 | 9230 | ID=MS.gene071314.t1.exon9;Parent=MS.gene071314.t1 |
| 50682 | CDS | 9230 | 9347 | 9230 | ID=cds.MS.gene071314.t1;Parent=MS.gene071314.t1 |
| Gene Sequence |
| Protein sequence |
