Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071519.t1 | XP_003607905.1 | 97.3 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.00E+00 | 1213.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071519.t1 | Q88BD4 | 28.3 | 434 | 277 | 13 | 93 | 521 | 17 | 421 | 7.3e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071519.t1 | G7JJZ2 | 97.3 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.0e+00 | 1213.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050133 | MS.gene071519 | -0.82449 | 7.85E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene071519 | -0.827626 | 1.41E-54 | -1.69E-46 |
| MS.gene050811 | MS.gene071519 | -0.831614 | 1.51E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene071519 | 0.832238 | 1.06E-55 | -1.69E-46 |
| MS.gene051208 | MS.gene071519 | 0.812007 | 5.26E-51 | -1.69E-46 |
| MS.gene051244 | MS.gene071519 | 0.822025 | 2.95E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene071519 | 0.843535 | 1.32E-58 | -1.69E-46 |
| MS.gene051552 | MS.gene071519 | -0.854446 | 1.22E-61 | -1.69E-46 |
| MS.gene051838 | MS.gene071519 | 0.800986 | 1.11E-48 | -1.69E-46 |
| MS.gene052011 | MS.gene071519 | -0.815402 | 9.41E-52 | -1.69E-46 |
| MS.gene052134 | MS.gene071519 | 0.821854 | 3.24E-53 | -1.69E-46 |
| MS.gene052135 | MS.gene071519 | 0.801757 | 7.74E-49 | -1.69E-46 |
| MS.gene052501 | MS.gene071519 | 0.804432 | 2.17E-49 | -1.69E-46 |
| MS.gene052589 | MS.gene071519 | 0.846878 | 1.65E-59 | -1.69E-46 |
| MS.gene053330 | MS.gene071519 | 0.873518 | 1.38E-67 | -1.69E-46 |
| MS.gene054102 | MS.gene071519 | 0.811757 | 5.97E-51 | -1.69E-46 |
| MS.gene054103 | MS.gene071519 | 0.801184 | 1.01E-48 | -1.69E-46 |
| MS.gene054107 | MS.gene071519 | 0.832899 | 7.27E-56 | -1.69E-46 |
| MS.gene054110 | MS.gene071519 | 0.825604 | 4.28E-54 | -1.69E-46 |
| MS.gene054343 | MS.gene071519 | 0.851758 | 7.21E-61 | -1.69E-46 |
| MS.gene054344 | MS.gene071519 | 0.831425 | 1.68E-55 | -1.69E-46 |
| MS.gene054719 | MS.gene071519 | 0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene071519 | -0.823732 | 1.18E-53 | -1.69E-46 |
| MS.gene055370 | MS.gene071519 | 0.850968 | 1.20E-60 | -1.69E-46 |
| MS.gene055488 | MS.gene071519 | -0.801775 | 7.68E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene071519 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene05556 | MS.gene071519 | 0.808969 | 2.38E-50 | -1.69E-46 |
| MS.gene056351 | MS.gene071519 | 0.884469 | 1.87E-71 | -1.69E-46 |
| MS.gene056633 | MS.gene071519 | 0.885449 | 8.06E-72 | -1.69E-46 |
| MS.gene056664 | MS.gene071519 | 0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene071519 | 0.847352 | 1.22E-59 | -1.69E-46 |
| MS.gene057196 | MS.gene071519 | 0.856148 | 3.91E-62 | -1.69E-46 |
| MS.gene057332 | MS.gene071519 | 0.84925 | 3.65E-60 | -1.69E-46 |
| MS.gene058418 | MS.gene071519 | -0.839883 | 1.21E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene071519 | 0.837292 | 5.67E-57 | -1.69E-46 |
| MS.gene058746 | MS.gene071519 | 0.875294 | 3.45E-68 | -1.69E-46 |
| MS.gene059061 | MS.gene071519 | -0.812483 | 4.14E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene071519 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene059303 | MS.gene071519 | 0.820967 | 5.18E-53 | -1.69E-46 |
| MS.gene059512 | MS.gene071519 | 0.96326 | 7.22E-122 | -1.69E-46 |
| MS.gene061231 | MS.gene071519 | 0.825798 | 3.85E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071519 | MS.gene54796 | PPI |
| MS.gene071519 | MS.gene49437 | PPI |
| MS.gene34039 | MS.gene071519 | PPI |
| MS.gene071519 | MS.gene005970 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071519.t1 | MTR_4g084270 | 97.271 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.0 | 1255 |
| MS.gene071519.t1 | MTR_1g094980 | 42.908 | 557 | 273 | 12 | 73 | 617 | 18 | 541 | 1.81e-136 | 409 |
| MS.gene071519.t1 | MTR_1g094980 | 40.640 | 625 | 315 | 16 | 15 | 617 | 23 | 613 | 3.15e-135 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071519.t1 | AT1G70820 | 73.710 | 620 | 151 | 6 | 1 | 617 | 1 | 611 | 0.0 | 946 |
| MS.gene071519.t1 | AT1G70820 | 74.457 | 599 | 141 | 6 | 1 | 596 | 1 | 590 | 0.0 | 923 |
| MS.gene071519.t1 | AT5G17530 | 43.643 | 527 | 256 | 10 | 75 | 590 | 20 | 516 | 6.03e-134 | 403 |
| MS.gene071519.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071519.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071519.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071519.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene071519.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 85 | 588 | 6.18e-133 | 403 |
| MS.gene071519.t1 | AT5G17530 | 44.466 | 524 | 248 | 11 | 70 | 580 | 85 | 578 | 4.28e-132 | 402 |
Find 142 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGATAAGTTTGTTGAAAA+TGG | 0.159254 | 4.4:-28156915 | MS.gene071519:CDS |
| AACTCCACTTAAGGGATTTC+AGG | 0.200454 | 4.4:-28159380 | MS.gene071519:intron |
| TCTCCTTGATGATTTCTCTT+AGG | 0.241263 | 4.4:+28159428 | None:intergenic |
| GTACAGGAAGGGAGGCTTAA+AGG | 0.243975 | 4.4:-28157539 | MS.gene071519:intron |
| ATGAGTTTGTCACCGTTTAT+TGG | 0.279165 | 4.4:+28158355 | None:intergenic |
| GATATCCTCTTGAGAATGTT+AGG | 0.280295 | 4.4:-28159899 | MS.gene071519:CDS |
| GAGGCAATATCAGAGAGTTT+TGG | 0.300966 | 4.4:-28159957 | MS.gene071519:CDS |
| CTCCTTTGTCAATGACATTT+CGG | 0.316509 | 4.4:+28158200 | None:intergenic |
| TGCAAGTTCACAGCAATGTT+TGG | 0.318198 | 4.4:+28157136 | None:intergenic |
| TGGTTGTATGGTGTTTGATA+TGG | 0.318441 | 4.4:-28159802 | MS.gene071519:CDS |
| AATGGTTTAGAGAAGGAAAA+AGG | 0.330346 | 4.4:-28159921 | MS.gene071519:CDS |
| GCATTATGAAACTCCACTTA+AGG | 0.337071 | 4.4:-28159389 | MS.gene071519:CDS |
| TGCTTTAGCATTTCGAGGTT+CGG | 0.347623 | 4.4:+28157831 | None:intergenic |
| TTAGAAAATTCAGCTGATCT+TGG | 0.348367 | 4.4:-28158433 | MS.gene071519:CDS |
| CATTATGAAACTCCACTTAA+GGG | 0.365922 | 4.4:-28159388 | MS.gene071519:CDS |
| TGTCTATGATGCTTCAATAA+TGG | 0.374026 | 4.4:-28159730 | MS.gene071519:intron |
| CTTATTACAGATTTATTGAA+TGG | 0.379212 | 4.4:+28160131 | None:intergenic |
| TTCAAACCATTGCGTGTGTA+AGG | 0.384986 | 4.4:+28159604 | None:intergenic |
| GTGAATGCTGGAAACGGTTC+AGG | 0.385357 | 4.4:-28158598 | MS.gene071519:CDS |
| ATGAAGAATTGGACAAGATT+AGG | 0.394518 | 4.4:-28160064 | MS.gene071519:CDS |
| AGAAGATGAGAAACCAAGTT+TGG | 0.394739 | 4.4:+28160157 | None:intergenic |
| GTAATAAGTGTGAAATGTTA+TGG | 0.397911 | 4.4:-28160116 | MS.gene071519:CDS |
| GCAAGTTCACAGCAATGTTT+GGG | 0.402997 | 4.4:+28157137 | None:intergenic |
| GAAAACCATTTCCTTGATGA+TGG | 0.403160 | 4.4:-28158109 | MS.gene071519:intron |
| TGTACGAGCATCGGTTACTA+TGG | 0.406310 | 4.4:+28158288 | None:intergenic |
| TAGACTCATGTGGTGATTGT+TGG | 0.408525 | 4.4:-28157508 | MS.gene071519:CDS |
| TTTGGGGAGTGGGTTATCAA+TGG | 0.408829 | 4.4:-28159939 | MS.gene071519:CDS |
| GGTTGTATGGTGTTTGATAT+GGG | 0.413997 | 4.4:-28159801 | MS.gene071519:CDS |
| TACAGGAAGGGAGGCTTAAA+GGG | 0.417177 | 4.4:-28157538 | MS.gene071519:intron |
| CATGGCTGCCATTGTATTGA+AGG | 0.421469 | 4.4:-28158326 | MS.gene071519:CDS |
| TTGAGTGTTGCAGTGTTTGC+CGG | 0.424973 | 4.4:-28159837 | MS.gene071519:CDS |
| ATATCTTTGCAAACCAAACT+TGG | 0.425190 | 4.4:-28160170 | MS.gene071519:CDS |
| TCTTGCTCGTGCTGGTTGTA+TGG | 0.433556 | 4.4:-28159814 | MS.gene071519:CDS |
| TCGGGATTGGGAATGTGATT+AGG | 0.440559 | 4.4:+28158493 | None:intergenic |
| CAGAATGGTTCGGATGTTAG+AGG | 0.441225 | 4.4:-28160035 | MS.gene071519:CDS |
| AAGCTTGGTGCAGATACCTT+TGG | 0.445592 | 4.4:-28158547 | MS.gene071519:CDS |
| ACTAACCATCATCAAGGAAA+TGG | 0.455559 | 4.4:+28158104 | None:intergenic |
| CTAAGTTCTACTGATTCATA+AGG | 0.458468 | 4.4:+28157868 | None:intergenic |
| AGTAGTGGTGGATGAAGAAT+TGG | 0.460522 | 4.4:-28160075 | MS.gene071519:CDS |
| TCGGTTACTATGGTTGATCC+TGG | 0.462108 | 4.4:+28158298 | None:intergenic |
| TGTTACTATCATTCTTTGCT+AGG | 0.462385 | 4.4:-28160200 | MS.gene071519:CDS |
| CAAACCTGAAATCCCTTAAG+TGG | 0.467227 | 4.4:+28159376 | None:intergenic |
| TTTGCCGGTCTTGCTCGTGC+TGG | 0.468617 | 4.4:-28159822 | MS.gene071519:CDS |
| GGACGCGACCCTCGAGTCAC+AGG | 0.474920 | 4.4:-28159867 | MS.gene071519:CDS |
| GTTGCATTGGAAGGCGAGAA+AGG | 0.478585 | 4.4:-28160011 | MS.gene071519:CDS |
| AACAAAGGGAATCCAATAAA+CGG | 0.482733 | 4.4:-28158367 | MS.gene071519:CDS |
| TGATTAGGAAACATGCCATC+AGG | 0.483044 | 4.4:+28158508 | None:intergenic |
| AGACTCATGTGGTGATTGTT+GGG | 0.486205 | 4.4:-28157507 | MS.gene071519:CDS |
| CATCTTATGATTGAAACATC+TGG | 0.487363 | 4.4:-28158148 | MS.gene071519:CDS |
| CCTCGAAATGCTAAAGCAAA+AGG | 0.489207 | 4.4:-28157826 | MS.gene071519:CDS |
| CCTCCACGGCAGGAGGAGTA+AGG | 0.491033 | 4.4:+28159976 | None:intergenic |
| GGTGAAAATTATAATTGAAA+TGG | 0.492081 | 4.4:-28157953 | MS.gene071519:CDS |
| TCTGATATTGCCTCCACGGC+AGG | 0.494254 | 4.4:+28159966 | None:intergenic |
| ACTAAGTTTATAACTGATAG+AGG | 0.494389 | 4.4:-28158253 | MS.gene071519:CDS |
| CTTATGAATCAGTAGAACTT+AGG | 0.496088 | 4.4:-28157867 | MS.gene071519:CDS |
| TATCAATTTGAGCAATGTCT+AGG | 0.498567 | 4.4:+28156931 | None:intergenic |
| TAGGAGGCTTCAGAATGGTT+CGG | 0.500282 | 4.4:-28160045 | MS.gene071519:CDS |
| GTGATTGTTGGGTGAGTGAA+GGG | 0.507653 | 4.4:-28157496 | MS.gene071519:CDS |
| TCAAGGAGGTTGCTTGTCAA+TGG | 0.508461 | 4.4:-28157104 | MS.gene071519:CDS |
| TGAACATGGACAACATGGTT+GGG | 0.514106 | 4.4:-28157185 | MS.gene071519:CDS |
| ATGAACATGGACAACATGGT+TGG | 0.518204 | 4.4:-28157186 | MS.gene071519:CDS |
| GAGAATGTTAGGGTGTCTCT+TGG | 0.518716 | 4.4:-28159888 | MS.gene071519:CDS |
| AAGCTTGGTGGATCAGATGA+AGG | 0.519389 | 4.4:-28157922 | MS.gene071519:CDS |
| ATTGAAGCATCATAGACAAA+TGG | 0.520839 | 4.4:+28159735 | None:intergenic |
| CTACAGATAATAGTGAATGC+TGG | 0.522007 | 4.4:-28158610 | MS.gene071519:intron |
| TCGTAAATATGCAAATAGAT+TGG | 0.522642 | 4.4:-28159518 | MS.gene071519:CDS |
| ATATTGATGCTCAAATGTAC+AGG | 0.524473 | 4.4:-28157442 | MS.gene071519:intron |
| TGACAAACTCATTGCTCTCA+TGG | 0.524707 | 4.4:-28158344 | MS.gene071519:CDS |
| ATATAATGAAGGGGCCTACA+TGG | 0.525333 | 4.4:-28157977 | MS.gene071519:intron |
| TTTGAGCATCAATATGAGCC+GGG | 0.527926 | 4.4:+28157450 | None:intergenic |
| CATATTGTAAATCAGGCTGA+TGG | 0.528700 | 4.4:+28156891 | None:intergenic |
| GGTGATTGTTGGGTGAGTGA+AGG | 0.531696 | 4.4:-28157497 | MS.gene071519:CDS |
| ATTTGAGCATCAATATGAGC+CGG | 0.540769 | 4.4:+28157449 | None:intergenic |
| ATATCCTCTTGAGAATGTTA+GGG | 0.543188 | 4.4:-28159898 | MS.gene071519:CDS |
| ACAACCAGCACGAGCAAGAC+CGG | 0.545469 | 4.4:+28159818 | None:intergenic |
| ATAATAGTGAATGCTGGAAA+CGG | 0.546802 | 4.4:-28158604 | MS.gene071519:CDS |
| TTTGAGATGCAGAGAGCCAA+AGG | 0.548288 | 4.4:+28158531 | None:intergenic |
| ATTGTATTGAAGGAAAATCC+AGG | 0.558299 | 4.4:-28158316 | MS.gene071519:CDS |
| CACCATTGTTTATACCGCGT+TGG | 0.558868 | 4.4:-28158226 | MS.gene071519:CDS |
| AACAATGAACATGGACAACA+TGG | 0.562336 | 4.4:-28157190 | MS.gene071519:CDS |
| TAACTAACTAACCATCATCA+AGG | 0.564044 | 4.4:+28158098 | None:intergenic |
| GGTGGATCAGATGAAGGGAT+TGG | 0.566186 | 4.4:-28157916 | MS.gene071519:CDS |
| CGACCTTACTCCTCCTGCCG+TGG | 0.566388 | 4.4:-28159979 | MS.gene071519:CDS |
| GGTTATCAATGGTTTAGAGA+AGG | 0.568136 | 4.4:-28159928 | MS.gene071519:CDS |
| TACGATGTCTTAGACAAGCT+TGG | 0.568721 | 4.4:-28158562 | MS.gene071519:CDS |
| CATTTGCCTTACACACGCAA+TGG | 0.572460 | 4.4:-28159610 | MS.gene071519:CDS |
| GGATGTTAGAGGAGTTGCAT+TGG | 0.576031 | 4.4:-28160024 | MS.gene071519:CDS |
| GCGGCGTGGTTGATAACAAA+GGG | 0.576808 | 4.4:-28158381 | MS.gene071519:CDS |
| ATTTAGACCCTGTGACTCGA+GGG | 0.578792 | 4.4:+28159859 | None:intergenic |
| CAAAGGAGTTCAGCTTAACA+AGG | 0.582640 | 4.4:-28158185 | MS.gene071519:CDS |
| CCTTACTCCTCCTGCCGTGG+AGG | 0.582653 | 4.4:-28159976 | MS.gene071519:CDS |
| AACTTGCAATCATCTGCTCA+AGG | 0.583771 | 4.4:-28157121 | MS.gene071519:CDS |
| GTTAGAGGAGTTGCATTGGA+AGG | 0.585950 | 4.4:-28160020 | MS.gene071519:CDS |
| TCTCTGCATCTCAAACCTGA+TGG | 0.591260 | 4.4:-28158523 | MS.gene071519:CDS |
| AGTGGAGTTTCATAATGCAA+AGG | 0.592830 | 4.4:+28159394 | None:intergenic |
| ATATTGTAAATCAGGCTGAT+GGG | 0.593285 | 4.4:+28156892 | None:intergenic |
| ATGTTGCTGTACAGGAAGGG+AGG | 0.593434 | 4.4:-28157547 | MS.gene071519:intron |
| AAGAATTGGACAAGATTAGG+AGG | 0.597154 | 4.4:-28160061 | MS.gene071519:CDS |
| GATATTGCCTCCACGGCAGG+AGG | 0.597822 | 4.4:+28159969 | None:intergenic |
| AAGATTAGGAGGCTTCAGAA+TGG | 0.602089 | 4.4:-28160050 | MS.gene071519:CDS |
| ATGGTAAGAATGAAGCTTGG+TGG | 0.602153 | 4.4:-28157934 | MS.gene071519:CDS |
| GAAATGGTAAGAATGAAGCT+TGG | 0.602393 | 4.4:-28157937 | MS.gene071519:CDS |
| ACTCTCTGATATTGCCTCCA+CGG | 0.605057 | 4.4:+28159962 | None:intergenic |
| TCCCGAGGACAAAATTGCCA+TGG | 0.605099 | 4.4:-28158476 | MS.gene071519:CDS |
| GGAAGGGAGGCTTAAAGGGT+GGG | 0.606977 | 4.4:-28157534 | MS.gene071519:CDS |
| GACGCGACCCTCGAGTCACA+GGG | 0.611240 | 4.4:-28159866 | MS.gene071519:CDS |
| GATACCGATGTTGACAGAAG+CGG | 0.611913 | 4.4:-28158400 | MS.gene071519:CDS |
| AATTTAGACCCTGTGACTCG+AGG | 0.613432 | 4.4:+28159858 | None:intergenic |
| AATGTGCTCATGAAACAAGC+GGG | 0.613902 | 4.4:+28159765 | None:intergenic |
| AAATGCTAAAGCAAAAGGAT+CGG | 0.620165 | 4.4:-28157821 | MS.gene071519:CDS |
| GAAGCATCATAGACAAATGG+AGG | 0.622415 | 4.4:+28159738 | None:intergenic |
| TGCTAAAGCAAAAGGATCGG+AGG | 0.622933 | 4.4:-28157818 | MS.gene071519:CDS |
| GGAGTTCAGCTTAACAAGGA+GGG | 0.622995 | 4.4:-28158181 | MS.gene071519:CDS |
| CAATGTGCTCATGAAACAAG+CGG | 0.623267 | 4.4:+28159764 | None:intergenic |
| GACACCCTAACATTCTCAAG+AGG | 0.625174 | 4.4:+28159894 | None:intergenic |
| CGACATGCTTGTACGAGCAT+CGG | 0.627032 | 4.4:+28158279 | None:intergenic |
| AGGAAGGGAGGCTTAAAGGG+TGG | 0.627499 | 4.4:-28157535 | MS.gene071519:CDS |
| AGCGGCGTGGTTGATAACAA+AGG | 0.627508 | 4.4:-28158382 | MS.gene071519:CDS |
| AGCTTGGTGGATCAGATGAA+GGG | 0.629122 | 4.4:-28157921 | MS.gene071519:CDS |
| AATGCTGGAAACGGTTCAGG+AGG | 0.629528 | 4.4:-28158595 | MS.gene071519:CDS |
| TACCGAAATGTCATTGACAA+AGG | 0.633169 | 4.4:-28158202 | MS.gene071519:CDS |
| ATGATTGAAACATCTGGTCA+CGG | 0.638606 | 4.4:-28158142 | MS.gene071519:CDS |
| TGCAAAGTATGATGAAGTAG+TGG | 0.641435 | 4.4:-28160090 | MS.gene071519:CDS |
| AACATGGTTGGGTACACATG+AGG | 0.643450 | 4.4:-28157174 | MS.gene071519:CDS |
| AAAGTATCAAACAATGAACA+TGG | 0.643511 | 4.4:-28157199 | MS.gene071519:CDS |
| GCACCTAAGAGAAATCATCA+AGG | 0.645515 | 4.4:-28159431 | MS.gene071519:CDS |
| AACCAACGCGGTATAAACAA+TGG | 0.648208 | 4.4:+28158224 | None:intergenic |
| TTTAAGCAGAGTAGACACTC+TGG | 0.648407 | 4.4:+28159495 | None:intergenic |
| GGGTGGGAGTTAGACTCATG+TGG | 0.663424 | 4.4:-28157518 | MS.gene071519:CDS |
| GGGTGTCATTTGTATCAACA+AGG | 0.663565 | 4.4:+28157471 | None:intergenic |
| AGGAGTTCAGCTTAACAAGG+AGG | 0.668823 | 4.4:-28158182 | MS.gene071519:CDS |
| CGATGTTGACAGAAGCGGCG+TGG | 0.670101 | 4.4:-28158395 | MS.gene071519:CDS |
| TTGAGCATCAATATGAGCCG+GGG | 0.674597 | 4.4:+28157451 | None:intergenic |
| TAATGAAGGGGCCTACATGG+TGG | 0.680927 | 4.4:-28157974 | MS.gene071519:intron |
| TGTTGATACAAATGACACCC+CGG | 0.681662 | 4.4:-28157468 | MS.gene071519:CDS |
| AAAGTATGATGAAGTAGTGG+TGG | 0.692926 | 4.4:-28160087 | MS.gene071519:CDS |
| TAATCACATTCCCAATCCCG+AGG | 0.693986 | 4.4:-28158491 | MS.gene071519:CDS |
| AAGTTTATAACTGATAGAGG+AGG | 0.701127 | 4.4:-28158250 | MS.gene071519:CDS |
| TTGCAATCATCTGCTCAAGG+AGG | 0.704569 | 4.4:-28157118 | MS.gene071519:CDS |
| TGACATTTCGGTAACCAACG+CGG | 0.705467 | 4.4:+28158212 | None:intergenic |
| CACGCCGCTTCTGTCAACAT+CGG | 0.714678 | 4.4:+28158396 | None:intergenic |
| AACATTTCGAAACTACATCG+AGG | 0.755001 | 4.4:-28157788 | MS.gene071519:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTATTTTTTACAAAAA+AGG | - | chr4.4:28159850-28159869 | MS.gene071519:CDS | 10.0% |
| !! | AAGATCTTAATATATTGAAT+AGG | + | chr4.4:28157895-28157914 | None:intergenic | 15.0% |
| !! | AGATCTTAATATATTGAATA+GGG | + | chr4.4:28157894-28157913 | None:intergenic | 15.0% |
| !! | ATTCAATATATTAAGATCTT+AGG | - | chr4.4:28157895-28157914 | MS.gene071519:CDS | 15.0% |
| !! | TGAAAAAATCCTTATATTTA+AGG | + | chr4.4:28159819-28159838 | None:intergenic | 15.0% |
| !! | TGCAATAATAATTGAATAAA+AGG | + | chr4.4:28160183-28160202 | None:intergenic | 15.0% |
| !! | TTCTGTATATATATAATGAA+GGG | - | chr4.4:28159178-28159197 | MS.gene071519:intron | 15.0% |
| !! | TTTCTGTATATATATAATGA+AGG | - | chr4.4:28159177-28159196 | MS.gene071519:intron | 15.0% |
| !!! | AAATTTTCAAAGAAAATAGA+GGG | + | chr4.4:28158502-28158521 | None:intergenic | 15.0% |
| !!! | TAAATTTTCAAAGAAAATAG+AGG | + | chr4.4:28158503-28158522 | None:intergenic | 15.0% |
| !!! | TTATTTTTTACAAAAAAGGA+CGG | - | chr4.4:28159854-28159873 | MS.gene071519:CDS | 15.0% |
| !! | CTTATTACAGATTTATTGAA+TGG | + | chr4.4:28157037-28157056 | None:intergenic | 20.0% |
| !! | GAAATTTCTCCTTAAATATA+AGG | - | chr4.4:28159807-28159826 | MS.gene071519:CDS | 20.0% |
| !! | GGTGAAAATTATAATTGAAA+TGG | - | chr4.4:28159212-28159231 | MS.gene071519:intron | 20.0% |
| !! | TACACGTATATAAAAAATTG+TGG | + | chr4.4:28159489-28159508 | None:intergenic | 20.0% |
| !! | TCTGTATATATATAATGAAG+GGG | - | chr4.4:28159179-28159198 | MS.gene071519:intron | 20.0% |
| !!! | ATTATGTATAGTACTTTTGA+AGG | + | chr4.4:28157481-28157500 | None:intergenic | 20.0% |
| !!! | ATTGATAAGTTTGTTGAAAA+TGG | - | chr4.4:28160250-28160269 | MS.gene071519:CDS | 20.0% |
| !!! | TTTAGAATAATAAATCTGAG+TGG | + | chr4.4:28160122-28160141 | None:intergenic | 20.0% |
| ! | AATATATTGAATAGGGCATA+AGG | + | chr4.4:28157887-28157906 | None:intergenic | 25.0% |
| ! | AATTGCATTTAGACTTAGTT+TGG | + | chr4.4:28158423-28158442 | None:intergenic | 25.0% |
| ! | ACATTGTGGTTATTTAAAAG+TGG | - | chr4.4:28159586-28159605 | MS.gene071519:CDS | 25.0% |
| ! | ACTAAGTTTATAACTGATAG+AGG | - | chr4.4:28158912-28158931 | MS.gene071519:intron | 25.0% |
| ! | ACTAGTTAAACTGTTCAATT+CGG | + | chr4.4:28157953-28157972 | None:intergenic | 25.0% |
| ! | ATTTAGAAGATACCAAATAC+AGG | + | chr4.4:28157856-28157875 | None:intergenic | 25.0% |
| ! | CAAAATGTGCTTATAAATAG+AGG | + | chr4.4:28159782-28159801 | None:intergenic | 25.0% |
| ! | GTAATAAGTGTGAAATGTTA+TGG | - | chr4.4:28157049-28157068 | MS.gene071519:intron | 25.0% |
| ! | GTTATTTATTCAACAGATGA+CGG | - | chr4.4:28157527-28157546 | MS.gene071519:CDS | 25.0% |
| ! | TAAATCAGATAACCAAATCA+TGG | + | chr4.4:28160159-28160178 | None:intergenic | 25.0% |
| ! | TATTAAGATCTTAGGAACTA+CGG | - | chr4.4:28157903-28157922 | MS.gene071519:CDS | 25.0% |
| ! | TATTTATTAGAGCCATGATT+TGG | - | chr4.4:28160144-28160163 | MS.gene071519:CDS | 25.0% |
| ! | TCGTAAATATGCAAATAGAT+TGG | - | chr4.4:28157647-28157666 | MS.gene071519:intron | 25.0% |
| ! | TTAATTTAAACATGACCTAG+AGG | - | chr4.4:28158159-28158178 | MS.gene071519:CDS | 25.0% |
| ! | TTAGTTAAAACTCATGTTCA+TGG | - | chr4.4:28159091-28159110 | MS.gene071519:intron | 25.0% |
| !! | AAAGTATCAAACAATGAACA+TGG | - | chr4.4:28159966-28159985 | MS.gene071519:CDS | 25.0% |
| !! | ATTGATTTCATCGATATTTG+AGG | - | chr4.4:28159522-28159541 | MS.gene071519:CDS | 25.0% |
| !! | ATTTAGACTTAGTTTGGATT+AGG | + | chr4.4:28158417-28158436 | None:intergenic | 25.0% |
| !! | CATAAAAACTGACTTTATTG+AGG | - | chr4.4:28159930-28159949 | MS.gene071519:CDS | 25.0% |
| !! | CTCTATTTATAAGCACATTT+TGG | - | chr4.4:28159780-28159799 | MS.gene071519:CDS | 25.0% |
| !!! | TGAAATTTTTTACGAAGAGA+GGG | - | chr4.4:28157580-28157599 | MS.gene071519:intron | 25.0% |
| !!! | TTGAAATTTTTTACGAAGAG+AGG | - | chr4.4:28157579-28157598 | MS.gene071519:intron | 25.0% |
| AAAGCTAGTTGAAGTTTAGT+TGG | + | chr4.4:28159415-28159434 | None:intergenic | 30.0% | |
| AAATAACTGAACCGTAAACA+GGG | + | chr4.4:28158106-28158125 | None:intergenic | 30.0% | |
| AAATGCTAAAGCAAAAGGAT+CGG | - | chr4.4:28159344-28159363 | MS.gene071519:intron | 30.0% | |
| AACAAAGGGAATCCAATAAA+CGG | - | chr4.4:28158798-28158817 | MS.gene071519:intron | 30.0% | |
| AAGTTTATAACTGATAGAGG+AGG | - | chr4.4:28158915-28158934 | MS.gene071519:intron | 30.0% | |
| AATGGTTTAGAGAAGGAAAA+AGG | - | chr4.4:28157244-28157263 | MS.gene071519:intron | 30.0% | |
| AATGTGCTTATAAATAGAGG+CGG | + | chr4.4:28159779-28159798 | None:intergenic | 30.0% | |
| ACTTTATTGAGGCAAATCAA+GGG | - | chr4.4:28159941-28159960 | MS.gene071519:CDS | 30.0% | |
| ATAATAGTGAATGCTGGAAA+CGG | - | chr4.4:28158561-28158580 | MS.gene071519:CDS | 30.0% | |
| ATATCCTCTTGAGAATGTTA+GGG | - | chr4.4:28157267-28157286 | MS.gene071519:intron | 30.0% | |
| ATATCTTTGCAAACCAAACT+TGG | - | chr4.4:28156995-28157014 | MS.gene071519:intron | 30.0% | |
| ATATTGATGCTCAAATGTAC+AGG | - | chr4.4:28159723-28159742 | MS.gene071519:intron | 30.0% | |
| ATGAAGAATTGGACAAGATT+AGG | - | chr4.4:28157101-28157120 | MS.gene071519:CDS | 30.0% | |
| ATTGTATTGAAGGAAAATCC+AGG | - | chr4.4:28158849-28158868 | MS.gene071519:intron | 30.0% | |
| CACAATGTGTCAAAATATGT+AGG | + | chr4.4:28159574-28159593 | None:intergenic | 30.0% | |
| CATCTATAAAACATTCAACG+TGG | + | chr4.4:28159142-28159161 | None:intergenic | 30.0% | |
| CATCTTATGATTGAAACATC+TGG | - | chr4.4:28159017-28159036 | MS.gene071519:intron | 30.0% | |
| CATTATGAAACTCCACTTAA+GGG | - | chr4.4:28157777-28157796 | MS.gene071519:intron | 30.0% | |
| CTTATGAATCAGTAGAACTT+AGG | - | chr4.4:28159298-28159317 | MS.gene071519:intron | 30.0% | |
| TAACTAACTAACCATCATCA+AGG | + | chr4.4:28159070-28159089 | None:intergenic | 30.0% | |
| TATCAATTTGAGCAATGTCT+AGG | + | chr4.4:28160237-28160256 | None:intergenic | 30.0% | |
| TATGATGCTTCAATAATGGT+CGG | - | chr4.4:28157439-28157458 | MS.gene071519:intron | 30.0% | |
| TGTCTATGATGCTTCAATAA+TGG | - | chr4.4:28157435-28157454 | MS.gene071519:intron | 30.0% | |
| TGTTACTATCATTCTTTGCT+AGG | - | chr4.4:28156965-28156984 | MS.gene071519:intron | 30.0% | |
| TTAGAAAATTCAGCTGATCT+TGG | - | chr4.4:28158732-28158751 | MS.gene071519:intron | 30.0% | |
| TTGTTACATATGCCTGTATT+TGG | - | chr4.4:28157841-28157860 | MS.gene071519:CDS | 30.0% | |
| ! | AACTAAACTTCAACTAGCTT+TGG | - | chr4.4:28159414-28159433 | MS.gene071519:CDS | 30.0% |
| ! | ATTGAAGCATCATAGACAAA+TGG | + | chr4.4:28157433-28157452 | None:intergenic | 30.0% |
| ! | CAAAGATGTTGAGAATTTTG+CGG | + | chr4.4:28156921-28156940 | None:intergenic | 30.0% |
| ! | CTCATGAAATCAACTTTTGT+TGG | + | chr4.4:28157702-28157721 | None:intergenic | 30.0% |
| ! | TATAATTTTCACCACCATGT+AGG | + | chr4.4:28159205-28159224 | None:intergenic | 30.0% |
| ! | TGGATTTTCCTTCAATACAA+TGG | + | chr4.4:28158850-28158869 | None:intergenic | 30.0% |
| ! | TTTTTACAAAAAAGGACGGA+GGG | - | chr4.4:28159858-28159877 | MS.gene071519:CDS | 30.0% |
| !! | CTAAATGCAATTTTGAAGAG+AGG | - | chr4.4:28158431-28158450 | MS.gene071519:CDS | 30.0% |
| !! | CTAAGTTCTACTGATTCATA+AGG | + | chr4.4:28159300-28159319 | None:intergenic | 30.0% |
| !! | TTTATAAGCACATTTTGGAG+AGG | - | chr4.4:28159785-28159804 | MS.gene071519:CDS | 30.0% |
| !!! | AAATTTTTTACGAAGAGAGG+GGG | - | chr4.4:28157582-28157601 | MS.gene071519:intron | 30.0% |
| !!! | CTACATATTTTGACACATTG+TGG | - | chr4.4:28159572-28159591 | MS.gene071519:CDS | 30.0% |
| !!! | GAAATTTTTTACGAAGAGAG+GGG | - | chr4.4:28157581-28157600 | MS.gene071519:intron | 30.0% |
| !!! | TTTTTTACAAAAAAGGACGG+AGG | - | chr4.4:28159857-28159876 | MS.gene071519:CDS | 30.0% |
| AAAGTATGATGAAGTAGTGG+TGG | - | chr4.4:28157078-28157097 | MS.gene071519:intron | 35.0% | |
| AACAATGAACATGGACAACA+TGG | - | chr4.4:28159975-28159994 | MS.gene071519:CDS | 35.0% | |
| AACATTTCGAAACTACATCG+AGG | - | chr4.4:28159377-28159396 | MS.gene071519:intron | 35.0% | |
| AAGAATTGGACAAGATTAGG+AGG | - | chr4.4:28157104-28157123 | MS.gene071519:CDS | 35.0% | |
| ACTAACCATCATCAAGGAAA+TGG | + | chr4.4:28159064-28159083 | None:intergenic | 35.0% | |
| AGAAGATGAGAAACCAAGTT+TGG | + | chr4.4:28157011-28157030 | None:intergenic | 35.0% | |
| AGTGGAGTTTCATAATGCAA+AGG | + | chr4.4:28157774-28157793 | None:intergenic | 35.0% | |
| ATGAGTTTGTCACCGTTTAT+TGG | + | chr4.4:28158813-28158832 | None:intergenic | 35.0% | |
| ATGATTGAAACATCTGGTCA+CGG | - | chr4.4:28159023-28159042 | MS.gene071519:intron | 35.0% | |
| ATGCCAGCTTATGAGTTAAA+AGG | + | chr4.4:28158378-28158397 | None:intergenic | 35.0% | |
| ATGGTCGGTTACATAAAACT+TGG | - | chr4.4:28157454-28157473 | MS.gene071519:CDS | 35.0% | |
| ATTTGAATACAGCGCATTAC+AGG | + | chr4.4:28158468-28158487 | None:intergenic | 35.0% | |
| ATTTGAGCATCAATATGAGC+CGG | + | chr4.4:28159719-28159738 | None:intergenic | 35.0% | |
| CAAATAACTGAACCGTAAAC+AGG | + | chr4.4:28158107-28158126 | None:intergenic | 35.0% | |
| CTACAGATAATAGTGAATGC+TGG | - | chr4.4:28158555-28158574 | MS.gene071519:CDS | 35.0% | |
| CTATGGTTATTTGAGTGGTT+CGG | - | chr4.4:28157999-28158018 | MS.gene071519:intron | 35.0% | |
| CTCCTTTGTCAATGACATTT+CGG | + | chr4.4:28158968-28158987 | None:intergenic | 35.0% | |
| GAAAACCATTTCCTTGATGA+TGG | - | chr4.4:28159056-28159075 | MS.gene071519:intron | 35.0% | |
| GAAATGGTAAGAATGAAGCT+TGG | - | chr4.4:28159228-28159247 | MS.gene071519:intron | 35.0% | |
| GACTTTATTGAGGCAAATCA+AGG | - | chr4.4:28159940-28159959 | MS.gene071519:CDS | 35.0% | |
| GATATCCTCTTGAGAATGTT+AGG | - | chr4.4:28157266-28157285 | MS.gene071519:intron | 35.0% | |
| GCATTATGAAACTCCACTTA+AGG | - | chr4.4:28157776-28157795 | MS.gene071519:intron | 35.0% | |
| GGTTATCAATGGTTTAGAGA+AGG | - | chr4.4:28157237-28157256 | MS.gene071519:intron | 35.0% | |
| GGTTGTATGGTGTTTGATAT+GGG | - | chr4.4:28157364-28157383 | MS.gene071519:intron | 35.0% | |
| TAAATGAGAGAGCTTCTCAA+AGG | + | chr4.4:28158351-28158370 | None:intergenic | 35.0% | |
| TACCGAAATGTCATTGACAA+AGG | - | chr4.4:28158963-28158982 | MS.gene071519:intron | 35.0% | |
| TGCAAAGTATGATGAAGTAG+TGG | - | chr4.4:28157075-28157094 | MS.gene071519:intron | 35.0% | |
| TGGTTGTATGGTGTTTGATA+TGG | - | chr4.4:28157363-28157382 | MS.gene071519:intron | 35.0% | |
| TTTATGTTGCTGTACAGGAA+GGG | - | chr4.4:28159615-28159634 | MS.gene071519:CDS | 35.0% | |
| ! | AGGCAATATCAGAGAGTTTT+GGG | - | chr4.4:28157209-28157228 | MS.gene071519:intron | 35.0% |
| ! | TCTCCTTGATGATTTCTCTT+AGG | + | chr4.4:28157740-28157759 | None:intergenic | 35.0% |
| ! | TTTTATGTTGCTGTACAGGA+AGG | - | chr4.4:28159614-28159633 | MS.gene071519:CDS | 35.0% |
| !! | CTTCCTTTTAACTCATAAGC+TGG | - | chr4.4:28158372-28158391 | MS.gene071519:CDS | 35.0% |
| !! | GTGTTTTTATGTTGCTGTAC+AGG | - | chr4.4:28159610-28159629 | MS.gene071519:CDS | 35.0% |
| !!! | AATTTTTTACGAAGAGAGGG+GGG | - | chr4.4:28157583-28157602 | MS.gene071519:intron | 35.0% |
| AACCAACGCGGTATAAACAA+TGG | + | chr4.4:28158944-28158963 | None:intergenic | 40.0% | |
| AACTCCACTTAAGGGATTTC+AGG | - | chr4.4:28157785-28157804 | MS.gene071519:intron | 40.0% | |
| AACTTGCAATCATCTGCTCA+AGG | - | chr4.4:28160044-28160063 | MS.gene071519:CDS | 40.0% | |
| AAGATTAGGAGGCTTCAGAA+TGG | - | chr4.4:28157115-28157134 | MS.gene071519:CDS | 40.0% | |
| AATGTGCTCATGAAACAAGC+GGG | + | chr4.4:28157403-28157422 | None:intergenic | 40.0% | |
| AATTAGCAATGCCTGCACTA+TGG | - | chr4.4:28157982-28158001 | MS.gene071519:intron | 40.0% | |
| AGACTCATGTGGTGATTGTT+GGG | - | chr4.4:28159658-28159677 | MS.gene071519:intron | 40.0% | |
| ATATAATGAAGGGGCCTACA+TGG | - | chr4.4:28159188-28159207 | MS.gene071519:intron | 40.0% | |
| ATGAACATGGACAACATGGT+TGG | - | chr4.4:28159979-28159998 | MS.gene071519:CDS | 40.0% | |
| ATGGTAAGAATGAAGCTTGG+TGG | - | chr4.4:28159231-28159250 | MS.gene071519:intron | 40.0% | |
| ATTGAATAGGGCATAAGGCA+AGG | + | chr4.4:28157882-28157901 | None:intergenic | 40.0% | |
| CAAACCTGAAATCCCTTAAG+TGG | + | chr4.4:28157792-28157811 | None:intergenic | 40.0% | |
| CAAAGGAGTTCAGCTTAACA+AGG | - | chr4.4:28158980-28158999 | MS.gene071519:intron | 40.0% | |
| CAATGTGCTCATGAAACAAG+CGG | + | chr4.4:28157404-28157423 | None:intergenic | 40.0% | |
| CACTCAAATAACCATAGTGC+AGG | + | chr4.4:28157996-28158015 | None:intergenic | 40.0% | |
| CAGTTTAACCATGACTCAGA+CGG | - | chr4.4:28158055-28158074 | MS.gene071519:intron | 40.0% | |
| CATAAGCTGGCATAAAGCAT+AGG | - | chr4.4:28158385-28158404 | MS.gene071519:CDS | 40.0% | |
| CCATGAATTGACCCTGTTTA+CGG | - | chr4.4:28158092-28158111 | MS.gene071519:intron | 40.0% | |
| CCTCGAAATGCTAAAGCAAA+AGG | - | chr4.4:28159339-28159358 | MS.gene071519:intron | 40.0% | |
| CTGCACTATGGTTATTTGAG+TGG | - | chr4.4:28157994-28158013 | MS.gene071519:intron | 40.0% | |
| GCAAGTTCACAGCAATGTTT+GGG | + | chr4.4:28160031-28160050 | None:intergenic | 40.0% | |
| GCACCTAAGAGAAATCATCA+AGG | - | chr4.4:28157734-28157753 | MS.gene071519:intron | 40.0% | |
| GGAACTACGGCATTTATGAT+AGG | - | chr4.4:28157916-28157935 | MS.gene071519:CDS | 40.0% | |
| TACGATGTCTTAGACAAGCT+TGG | - | chr4.4:28158603-28158622 | MS.gene071519:CDS | 40.0% | |
| TAGACTCATGTGGTGATTGT+TGG | - | chr4.4:28159657-28159676 | MS.gene071519:intron | 40.0% | |
| TGAACATGGACAACATGGTT+GGG | - | chr4.4:28159980-28159999 | MS.gene071519:CDS | 40.0% | |
| TGACAAACTCATTGCTCTCA+TGG | - | chr4.4:28158821-28158840 | MS.gene071519:intron | 40.0% | |
| TGATTAGGAAACATGCCATC+AGG | + | chr4.4:28158660-28158679 | None:intergenic | 40.0% | |
| TGCAAGTTCACAGCAATGTT+TGG | + | chr4.4:28160032-28160051 | None:intergenic | 40.0% | |
| TGCTTATAAATAGAGGCGGA+GGG | + | chr4.4:28159775-28159794 | None:intergenic | 40.0% | |
| TGCTTTAGCATTTCGAGGTT+CGG | + | chr4.4:28159337-28159356 | None:intergenic | 40.0% | |
| TGTTGATACAAATGACACCC+CGG | - | chr4.4:28159697-28159716 | MS.gene071519:intron | 40.0% | |
| TTCAAACCATTGCGTGTGTA+AGG | + | chr4.4:28157564-28157583 | None:intergenic | 40.0% | |
| TTGAATAGGGCATAAGGCAA+GGG | + | chr4.4:28157881-28157900 | None:intergenic | 40.0% | |
| TTTAAGCAGAGTAGACACTC+TGG | + | chr4.4:28157673-28157692 | None:intergenic | 40.0% | |
| TTTCCTTCTCTATGAGTCAG+TGG | + | chr4.4:28158247-28158266 | None:intergenic | 40.0% | |
| TTTGAGCATCAATATGAGCC+GGG | + | chr4.4:28159718-28159737 | None:intergenic | 40.0% | |
| ! | CCTTTTGCTTTAGCATTTCG+AGG | + | chr4.4:28159342-28159361 | None:intergenic | 40.0% |
| ! | CTGCTTTAAACCACTAGAAC+CGG | + | chr4.4:28158038-28158057 | None:intergenic | 40.0% |
| ! | GAAGCATCATAGACAAATGG+AGG | + | chr4.4:28157430-28157449 | None:intergenic | 40.0% |
| ! | GAGGCAATATCAGAGAGTTT+TGG | - | chr4.4:28157208-28157227 | MS.gene071519:intron | 40.0% |
| ! | GGCAATATCAGAGAGTTTTG+GGG | - | chr4.4:28157210-28157229 | MS.gene071519:intron | 40.0% |
| ! | TGAGAATTTTGCGGAAGTAG+AGG | + | chr4.4:28156912-28156931 | None:intergenic | 40.0% |
| ! | TGCAGTTTTCTCAAAGCAAG+TGG | - | chr4.4:28160199-28160218 | MS.gene071519:CDS | 40.0% |
| ! | TGCTTTTCTTGTCATTGCCA+TGG | + | chr4.4:28158709-28158728 | None:intergenic | 40.0% |
| !! | AGTAGTGGTGGATGAAGAAT+TGG | - | chr4.4:28157090-28157109 | MS.gene071519:CDS | 40.0% |
| !! | GGGTGTCATTTGTATCAACA+AGG | + | chr4.4:28159697-28159716 | None:intergenic | 40.0% |
| AACATGGTTGGGTACACATG+AGG | - | chr4.4:28159991-28160010 | MS.gene071519:CDS | 45.0% | |
| AATTTAGACCCTGTGACTCG+AGG | + | chr4.4:28157310-28157329 | None:intergenic | 45.0% | |
| ACATGACCTAGAGGTCTCAT+TGG | - | chr4.4:28158168-28158187 | MS.gene071519:CDS | 45.0% | |
| ACTCTCTGATATTGCCTCCA+CGG | + | chr4.4:28157206-28157225 | None:intergenic | 45.0% | |
| AGGAGTTCAGCTTAACAAGG+AGG | - | chr4.4:28158983-28159002 | MS.gene071519:intron | 45.0% | |
| ATCCAACCAATGAGACCTCT+AGG | + | chr4.4:28158177-28158196 | None:intergenic | 45.0% | |
| ATTTAGACCCTGTGACTCGA+GGG | + | chr4.4:28157309-28157328 | None:intergenic | 45.0% | |
| CACCATTGTTTATACCGCGT+TGG | - | chr4.4:28158939-28158958 | MS.gene071519:intron | 45.0% | |
| CATGACTCAGACGGTTCAAT+CGG | - | chr4.4:28158064-28158083 | MS.gene071519:intron | 45.0% | |
| CATGGCTGCCATTGTATTGA+AGG | - | chr4.4:28158839-28158858 | MS.gene071519:intron | 45.0% | |
| CATTTGCCTTACACACGCAA+TGG | - | chr4.4:28157555-28157574 | MS.gene071519:intron | 45.0% | |
| CCGTAAACAGGGTCAATTCA+TGG | + | chr4.4:28158095-28158114 | None:intergenic | 45.0% | |
| GACACCCTAACATTCTCAAG+AGG | + | chr4.4:28157274-28157293 | None:intergenic | 45.0% | |
| GATACCGATGTTGACAGAAG+CGG | - | chr4.4:28158765-28158784 | MS.gene071519:intron | 45.0% | |
| GGAGTTCAGCTTAACAAGGA+GGG | - | chr4.4:28158984-28159003 | MS.gene071519:intron | 45.0% | |
| GGATGTTAGAGGAGTTGCAT+TGG | - | chr4.4:28157141-28157160 | MS.gene071519:CDS | 45.0% | |
| GTGATTGTTGGGTGAGTGAA+GGG | - | chr4.4:28159669-28159688 | MS.gene071519:intron | 45.0% | |
| GTGCTTATAAATAGAGGCGG+AGG | + | chr4.4:28159776-28159795 | None:intergenic | 45.0% | |
| GTTAGAGGAGTTGCATTGGA+AGG | - | chr4.4:28157145-28157164 | MS.gene071519:CDS | 45.0% | |
| TAATCACATTCCCAATCCCG+AGG | - | chr4.4:28158674-28158693 | MS.gene071519:intron | 45.0% | |
| TACAGGAAGGGAGGCTTAAA+GGG | - | chr4.4:28159627-28159646 | MS.gene071519:intron | 45.0% | |
| TAGGAGGCTTCAGAATGGTT+CGG | - | chr4.4:28157120-28157139 | MS.gene071519:CDS | 45.0% | |
| TCAAGGAGGTTGCTTGTCAA+TGG | - | chr4.4:28160061-28160080 | MS.gene071519:CDS | 45.0% | |
| TCGGGATTGGGAATGTGATT+AGG | + | chr4.4:28158675-28158694 | None:intergenic | 45.0% | |
| TCGGTTACTATGGTTGATCC+TGG | + | chr4.4:28158870-28158889 | None:intergenic | 45.0% | |
| TCTCTGCATCTCAAACCTGA+TGG | - | chr4.4:28158642-28158661 | MS.gene071519:intron | 45.0% | |
| TGACATTTCGGTAACCAACG+CGG | + | chr4.4:28158956-28158975 | None:intergenic | 45.0% | |
| TGCTAAAGCAAAAGGATCGG+AGG | - | chr4.4:28159347-28159366 | MS.gene071519:intron | 45.0% | |
| TTGAGCATCAATATGAGCCG+GGG | + | chr4.4:28159717-28159736 | None:intergenic | 45.0% | |
| TTGCAATCATCTGCTCAAGG+AGG | - | chr4.4:28160047-28160066 | MS.gene071519:CDS | 45.0% | |
| ! | AAGCTTGGTGGATCAGATGA+AGG | - | chr4.4:28159243-28159262 | MS.gene071519:intron | 45.0% |
| ! | AGCTTGGTGGATCAGATGAA+GGG | - | chr4.4:28159244-28159263 | MS.gene071519:intron | 45.0% |
| ! | CAGAATGGTTCGGATGTTAG+AGG | - | chr4.4:28157130-28157149 | MS.gene071519:CDS | 45.0% |
| ! | GAGAATGTTAGGGTGTCTCT+TGG | - | chr4.4:28157277-28157296 | MS.gene071519:intron | 45.0% |
| ! | GAGCGATCACAGTTTCGTTT+TGG | - | chr4.4:28158126-28158145 | MS.gene071519:CDS | 45.0% |
| ! | GCAATTTTGTCCTCGGGATT+GGG | + | chr4.4:28158687-28158706 | None:intergenic | 45.0% |
| ! | GGTCTCATTGGTTGGATGTT+CGG | - | chr4.4:28158180-28158199 | MS.gene071519:CDS | 45.0% |
| ! | GTGCAGGCATTGCTAATTCA+TGG | + | chr4.4:28157980-28157999 | None:intergenic | 45.0% |
| ! | TGCCATGGCAATTTTGTCCT+CGG | + | chr4.4:28158694-28158713 | None:intergenic | 45.0% |
| ! | TTGAGTGTTGCAGTGTTTGC+CGG | - | chr4.4:28157328-28157347 | MS.gene071519:intron | 45.0% |
| ! | TTTGAGATGCAGAGAGCCAA+AGG | + | chr4.4:28158637-28158656 | None:intergenic | 45.0% |
| !! | AAGCTTGGTGCAGATACCTT+TGG | - | chr4.4:28158618-28158637 | MS.gene071519:intron | 45.0% |
| !! | TCTCCACTGACTCATAGAGA+AGG | - | chr4.4:28158241-28158260 | MS.gene071519:CDS | 45.0% |
| !! | TGTACGAGCATCGGTTACTA+TGG | + | chr4.4:28158880-28158899 | None:intergenic | 45.0% |
| !! | TTTGGGGAGTGGGTTATCAA+TGG | - | chr4.4:28157226-28157245 | MS.gene071519:intron | 45.0% |
| !!! | ATCAGAGAGTTTTGGGGAGT+GGG | - | chr4.4:28157216-28157235 | MS.gene071519:intron | 45.0% |
| !!! | TATCAGAGAGTTTTGGGGAG+TGG | - | chr4.4:28157215-28157234 | MS.gene071519:intron | 45.0% |
| AATGCTGGAAACGGTTCAGG+AGG | - | chr4.4:28158570-28158589 | MS.gene071519:CDS | 50.0% | |
| ATGTTGCTGTACAGGAAGGG+AGG | - | chr4.4:28159618-28159637 | MS.gene071519:CDS | 50.0% | |
| CGACATGCTTGTACGAGCAT+CGG | + | chr4.4:28158889-28158908 | None:intergenic | 50.0% | |
| CGATTGAACCGTCTGAGTCA+TGG | + | chr4.4:28158066-28158085 | None:intergenic | 50.0% | |
| GACCTAGAGGTCTCATTGGT+TGG | - | chr4.4:28158172-28158191 | MS.gene071519:CDS | 50.0% | |
| GGTGATTGTTGGGTGAGTGA+AGG | - | chr4.4:28159668-28159687 | MS.gene071519:intron | 50.0% | |
| GGTGGATCAGATGAAGGGAT+TGG | - | chr4.4:28159249-28159268 | MS.gene071519:intron | 50.0% | |
| GTACAGGAAGGGAGGCTTAA+AGG | - | chr4.4:28159626-28159645 | MS.gene071519:intron | 50.0% | |
| GTGAATGCTGGAAACGGTTC+AGG | - | chr4.4:28158567-28158586 | MS.gene071519:CDS | 50.0% | |
| GTTGCATTGGAAGGCGAGAA+AGG | - | chr4.4:28157154-28157173 | MS.gene071519:CDS | 50.0% | |
| TAATGAAGGGGCCTACATGG+TGG | - | chr4.4:28159191-28159210 | MS.gene071519:intron | 50.0% | |
| TCCCGAGGACAAAATTGCCA+TGG | - | chr4.4:28158689-28158708 | MS.gene071519:intron | 50.0% | |
| ! | CACTTTCGTTCCGGTTCTAG+TGG | - | chr4.4:28158025-28158044 | MS.gene071519:intron | 50.0% |
| ! | GCCATGGCAATTTTGTCCTC+GGG | + | chr4.4:28158693-28158712 | None:intergenic | 50.0% |
| ! | GGCAATTTTGTCCTCGGGAT+TGG | + | chr4.4:28158688-28158707 | None:intergenic | 50.0% |
| !! | AGCGGCGTGGTTGATAACAA+AGG | - | chr4.4:28158783-28158802 | MS.gene071519:intron | 50.0% |
| !! | GCGGCGTGGTTGATAACAAA+GGG | - | chr4.4:28158784-28158803 | MS.gene071519:intron | 50.0% |
| !! | TCTTGCTCGTGCTGGTTGTA+TGG | - | chr4.4:28157351-28157370 | MS.gene071519:intron | 50.0% |
| ACAACCAGCACGAGCAAGAC+CGG | + | chr4.4:28157350-28157369 | None:intergenic | 55.0% | |
| AGGAAGGGAGGCTTAAAGGG+TGG | - | chr4.4:28159630-28159649 | MS.gene071519:intron | 55.0% | |
| CACGCCGCTTCTGTCAACAT+CGG | + | chr4.4:28158772-28158791 | None:intergenic | 55.0% | |
| GGAAGGGAGGCTTAAAGGGT+GGG | - | chr4.4:28159631-28159650 | MS.gene071519:intron | 55.0% | |
| GGGTGGGAGTTAGACTCATG+TGG | - | chr4.4:28159647-28159666 | MS.gene071519:intron | 55.0% | |
| GTTCGGTCGCACTTTCGTTC+CGG | - | chr4.4:28158016-28158035 | MS.gene071519:intron | 55.0% | |
| TCTGATATTGCCTCCACGGC+AGG | + | chr4.4:28157202-28157221 | None:intergenic | 55.0% | |
| CGATGTTGACAGAAGCGGCG+TGG | - | chr4.4:28158770-28158789 | MS.gene071519:intron | 60.0% | |
| GATATTGCCTCCACGGCAGG+AGG | + | chr4.4:28157199-28157218 | None:intergenic | 60.0% | |
| TTTGCCGGTCTTGCTCGTGC+TGG | - | chr4.4:28157343-28157362 | MS.gene071519:intron | 60.0% | |
| CCTCCACGGCAGGAGGAGTA+AGG | + | chr4.4:28157192-28157211 | None:intergenic | 65.0% | |
| CCTTACTCCTCCTGCCGTGG+AGG | - | chr4.4:28157189-28157208 | MS.gene071519:CDS | 65.0% | |
| CGACCTTACTCCTCCTGCCG+TGG | - | chr4.4:28157186-28157205 | MS.gene071519:CDS | 65.0% | |
| GACGCGACCCTCGAGTCACA+GGG | - | chr4.4:28157299-28157318 | MS.gene071519:intron | 65.0% | |
| ! | AGGGGGGCTGACTTCACTGG+AGG | - | chr4.4:28157599-28157618 | MS.gene071519:intron | 65.0% |
| ! | GAGAGGGGGGCTGACTTCAC+TGG | - | chr4.4:28157596-28157615 | MS.gene071519:intron | 65.0% |
| GGACGCGACCCTCGAGTCAC+AGG | - | chr4.4:28157298-28157317 | MS.gene071519:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28156902 | 28160285 | 28156902 | ID=MS.gene071519 |
| chr4.4 | mRNA | 28156902 | 28160285 | 28156902 | ID=MS.gene071519.t1;Parent=MS.gene071519 |
| chr4.4 | exon | 28159731 | 28160285 | 28159731 | ID=MS.gene071519.t1.exon1;Parent=MS.gene071519.t1 |
| chr4.4 | CDS | 28159731 | 28160285 | 28159731 | ID=cds.MS.gene071519.t1;Parent=MS.gene071519.t1 |
| chr4.4 | exon | 28159381 | 28159644 | 28159381 | ID=MS.gene071519.t1.exon2;Parent=MS.gene071519.t1 |
| chr4.4 | CDS | 28159381 | 28159644 | 28159381 | ID=cds.MS.gene071519.t1;Parent=MS.gene071519.t1 |
| chr4.4 | exon | 28158110 | 28158626 | 28158110 | ID=MS.gene071519.t1.exon3;Parent=MS.gene071519.t1 |
| chr4.4 | CDS | 28158110 | 28158626 | 28158110 | ID=cds.MS.gene071519.t1;Parent=MS.gene071519.t1 |
| chr4.4 | exon | 28157789 | 28157988 | 28157789 | ID=MS.gene071519.t1.exon4;Parent=MS.gene071519.t1 |
| chr4.4 | CDS | 28157789 | 28157988 | 28157789 | ID=cds.MS.gene071519.t1;Parent=MS.gene071519.t1 |
| chr4.4 | exon | 28157443 | 28157555 | 28157443 | ID=MS.gene071519.t1.exon5;Parent=MS.gene071519.t1 |
| chr4.4 | CDS | 28157443 | 28157555 | 28157443 | ID=cds.MS.gene071519.t1;Parent=MS.gene071519.t1 |
| chr4.4 | exon | 28157085 | 28157225 | 28157085 | ID=MS.gene071519.t1.exon6;Parent=MS.gene071519.t1 |
| chr4.4 | CDS | 28157085 | 28157225 | 28157085 | ID=cds.MS.gene071519.t1;Parent=MS.gene071519.t1 |
| chr4.4 | exon | 28156902 | 28156983 | 28156902 | ID=MS.gene071519.t1.exon7;Parent=MS.gene071519.t1 |
| chr4.4 | CDS | 28156902 | 28156983 | 28156902 | ID=cds.MS.gene071519.t1;Parent=MS.gene071519.t1 |
| Gene Sequence |
| Protein sequence |
