AlfalfaGEDB | MS.gene071669

M. sativa cultivar XinJiangDaYe / MS.gene071669

KEGG: -
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00861.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071669.t1	GAU29362.1	98.9	92	1	0	1	92	23	114	2.20E-38	167.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071669.t1	A8IAP8	45.6	90	48	1	1	90	31	119	1.8e-09	63.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071669.t1	A0A2Z6MWZ4	98.9	92	1	0	1	92	23	114	1.6e-38	167.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049419	MS.gene071669	0.859345	4.41E-63	-1.69E-46
MS.gene050105	MS.gene071669	-0.843662	1.22E-58	-1.69E-46
MS.gene050654	MS.gene071669	-0.808932	2.43E-50	-1.69E-46
MS.gene051122	MS.gene071669	-0.844424	7.62E-59	-1.69E-46
MS.gene051368	MS.gene071669	-0.805195	1.50E-49	-1.69E-46
MS.gene051793	MS.gene071669	0.838761	2.37E-57	-1.69E-46
MS.gene051828	MS.gene071669	0.83069	2.55E-55	-1.69E-46
MS.gene051924	MS.gene071669	0.8092	2.13E-50	-1.69E-46
MS.gene051926	MS.gene071669	0.825486	4.57E-54	-1.69E-46
MS.gene05216	MS.gene071669	-0.859295	4.57E-63	-1.69E-46
MS.gene052674	MS.gene071669	-0.888616	5.04E-73	-1.69E-46
MS.gene052675	MS.gene071669	-0.892125	2.12E-74	-1.69E-46
MS.gene052677	MS.gene071669	-0.895712	7.39E-76	-1.69E-46
MS.gene054479	MS.gene071669	-0.84463	6.71E-59	-1.69E-46
MS.gene054950	MS.gene071669	0.803463	3.44E-49	-1.69E-46
MS.gene055701	MS.gene071669	-0.835375	1.74E-56	-1.69E-46
MS.gene056045	MS.gene071669	-0.800937	1.14E-48	-1.69E-46
MS.gene056064	MS.gene071669	-0.82883	7.23E-55	-1.69E-46
MS.gene056480	MS.gene071669	-0.84058	7.98E-58	-1.69E-46
MS.gene056779	MS.gene071669	-0.819063	1.41E-52	-1.69E-46
MS.gene057155	MS.gene071669	-0.803564	3.28E-49	-1.69E-46
MS.gene057156	MS.gene071669	0.869733	2.48E-66	-1.69E-46
MS.gene058081	MS.gene071669	-0.841738	3.96E-58	-1.69E-46
MS.gene058223	MS.gene071669	0.891879	2.65E-74	-1.69E-46
MS.gene058429	MS.gene071669	-0.814128	1.80E-51	-1.69E-46
MS.gene059438	MS.gene071669	-0.814088	1.84E-51	-1.69E-46
MS.gene059440	MS.gene071669	-0.819641	1.04E-52	-1.69E-46
MS.gene059952	MS.gene071669	-0.82539	4.81E-54	-1.69E-46
MS.gene06052	MS.gene071669	-0.815046	1.13E-51	-1.69E-46
MS.gene060850	MS.gene071669	-0.861822	7.83E-64	-1.69E-46
MS.gene060851	MS.gene071669	-0.879548	1.14E-69	-1.69E-46
MS.gene060852	MS.gene071669	-0.874796	5.10E-68	-1.69E-46
MS.gene060932	MS.gene071669	-0.827631	1.41E-54	-1.69E-46
MS.gene06121	MS.gene071669	-0.818925	1.52E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071669.t1	MTR_1g114200	98.913	92	1	0	1	92	23	114	3.35e-61	182
MS.gene071669.t1	MTR_4g032660	33.708	89	59	0	1	89	108	196	1.27e-12	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071669.t1	AT5G27820	78.261	92	20	0	1	92	23	114	2.13e-50	154
MS.gene071669.t1	AT3G20230	35.955	89	57	0	1	89	95	183	1.50e-14	65.5

Find 23 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAACATCCCGAGTAGTTTCC+AGG	0.336475	1.3:+77276606	None:intergenic
AAGCGGTTATTGATTCTCTC+AGG	0.400454	1.3:-77276475	MS.gene071669:CDS
GAAAGCCTTGAGATCAAGCC+TGG	0.444737	1.3:-77276624	MS.gene071669:CDS
CTCCTGTGAGCTTGCAGAAG+AGG	0.447057	1.3:+77276646	None:intergenic
ATTGATTCTCTCAGGGAAGC+TGG	0.452667	1.3:-77276467	MS.gene071669:CDS
AAGAGAGAACAGAGGTATCA+TGG	0.461247	1.3:-77276506	MS.gene071669:CDS
GTTGCTGCAGCTGCAAAGAT+TGG	0.469361	1.3:-77276587	MS.gene071669:CDS
AGTTTCCAGGCTTGATCTCA+AGG	0.483054	1.3:+77276619	None:intergenic
TGCCTCTTCTGCAAGCTCAC+AGG	0.512391	1.3:-77276648	MS.gene071669:CDS
GAAGAGGCAACGGTAGCAGT+TGG	0.531232	1.3:+77276662	None:intergenic
GATCAAGCCTGGAAACTACT+CGG	0.540330	1.3:-77276613	MS.gene071669:CDS
AGCGGAACGCCTTTCGCTCA+AGG	0.547714	1.3:-77276555	MS.gene071669:CDS
CAGGAATGTCCTTGAGCGAA+AGG	0.550217	1.3:+77276546	None:intergenic
TTGCTGCAGCTGCAAAGATT+GGG	0.550997	1.3:-77276586	MS.gene071669:CDS
AGCGGTTATTGATTCTCTCA+GGG	0.559363	1.3:-77276474	MS.gene071669:CDS
TTCAAGTGAACAGAAACAGC+AGG	0.564698	1.3:+77276527	None:intergenic
AGAACAGAGGTATCATGGAA+AGG	0.588862	1.3:-77276501	MS.gene071669:CDS
ATCAAGCCTGGAAACTACTC+GGG	0.593151	1.3:-77276612	MS.gene071669:CDS
CAACGGTAGCAGTTGGAGTG+TGG	0.604975	1.3:+77276669	None:intergenic
TGAGCTTGCAGAAGAGGCAA+CGG	0.638179	1.3:+77276652	None:intergenic
GTATCATGGAAAGGTAAAAG+CGG	0.664247	1.3:-77276492	MS.gene071669:CDS
AAAGATTGGGAAGCTACTAG+CGG	0.716694	1.3:-77276573	MS.gene071669:CDS
TTCACTTGAAGAGAGAACAG+AGG	0.737493	1.3:-77276514	MS.gene071669:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	GTATCATGGAAAGGTAAAAG+CGG	-	chr1.3:77276666-77276685	MS.gene071669:CDS	35.0%
	AAAGATTGGGAAGCTACTAG+CGG	-	chr1.3:77276585-77276604	MS.gene071669:CDS	40.0%
	TTCAAGTGAACAGAAACAGC+AGG	+	chr1.3:77276634-77276653	None:intergenic	40.0%
	TTCACTTGAAGAGAGAACAG+AGG	-	chr1.3:77276644-77276663	MS.gene071669:CDS	40.0%
!!	AAGAGAGAACAGAGGTATCA+TGG	-	chr1.3:77276652-77276671	MS.gene071669:CDS	40.0%
!!	AAGCGGTTATTGATTCTCTC+AGG	-	chr1.3:77276683-77276702	MS.gene071669:CDS	40.0%
!!	AGAACAGAGGTATCATGGAA+AGG	-	chr1.3:77276657-77276676	MS.gene071669:CDS	40.0%
!!	AGCGGTTATTGATTCTCTCA+GGG	-	chr1.3:77276684-77276703	MS.gene071669:CDS	40.0%
	AGTTTCCAGGCTTGATCTCA+AGG	+	chr1.3:77276542-77276561	None:intergenic	45.0%
	ATCAAGCCTGGAAACTACTC+GGG	-	chr1.3:77276546-77276565	MS.gene071669:CDS	45.0%
	GATCAAGCCTGGAAACTACT+CGG	-	chr1.3:77276545-77276564	MS.gene071669:CDS	45.0%
	TTGCTGCAGCTGCAAAGATT+GGG	-	chr1.3:77276572-77276591	MS.gene071669:CDS	45.0%
!	ATTGATTCTCTCAGGGAAGC+TGG	-	chr1.3:77276691-77276710	MS.gene071669:CDS	45.0%
	CAACATCCCGAGTAGTTTCC+AGG	+	chr1.3:77276555-77276574	None:intergenic	50.0%
	CAGGAATGTCCTTGAGCGAA+AGG	+	chr1.3:77276615-77276634	None:intergenic	50.0%
	GAAAGCCTTGAGATCAAGCC+TGG	-	chr1.3:77276534-77276553	MS.gene071669:CDS	50.0%
	GTTGCTGCAGCTGCAAAGAT+TGG	-	chr1.3:77276571-77276590	MS.gene071669:CDS	50.0%
	TGAGCTTGCAGAAGAGGCAA+CGG	+	chr1.3:77276509-77276528	None:intergenic	50.0%
	CAACGGTAGCAGTTGGAGTG+TGG	+	chr1.3:77276492-77276511	None:intergenic	55.0%
	CTCCTGTGAGCTTGCAGAAG+AGG	+	chr1.3:77276515-77276534	None:intergenic	55.0%
	GAAGAGGCAACGGTAGCAGT+TGG	+	chr1.3:77276499-77276518	None:intergenic	55.0%
	TGCCTCTTCTGCAAGCTCAC+AGG	-	chr1.3:77276510-77276529	MS.gene071669:CDS	55.0%
	AGCGGAACGCCTTTCGCTCA+AGG	-	chr1.3:77276603-77276622	MS.gene071669:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	77276451	77276729	77276451	ID=MS.gene071669
chr1.3	mRNA	77276451	77276729	77276451	ID=MS.gene071669.t1;Parent=MS.gene071669
chr1.3	exon	77276451	77276729	77276451	ID=MS.gene071669.t1.exon1;Parent=MS.gene071669.t1
chr1.3	CDS	77276451	77276729	77276451	ID=cds.MS.gene071669.t1;Parent=MS.gene071669.t1

Gene Sequence	>MS.gene071669 ATGCATTTCACAAATAAGTATGTGAGTGCTCAAGTGATCCACACTCCAACTGCTACCGTTGCCTCTTCTGCAAGCTCACAGGAGAAAGCCTTGAGATCAAGCCTGGAAACTACTCGGGATGTTGCTGCAGCTGCAAAGATTGGGAAGCTACTAGCGGAACGCCTTTCGCTCAAGGACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAACAGAGGTATCATGGAAAGGTAAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGTTGCTTTGA
Protein sequence	>MS.gene071669.t1 MHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVKLL