Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072832.t1 | XP_003611165.1 | 91 | 580 | 50 | 1 | 1 | 578 | 1 | 580 | 1.4e-308 | 1068.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072832.t1 | Q9S746 | 54.3 | 530 | 233 | 3 | 48 | 572 | 63 | 588 | 1.8e-163 | 577.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072832.t1 | G7KER6 | 91.0 | 580 | 50 | 1 | 1 | 578 | 1 | 580 | 1.0e-308 | 1068.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070505 | MS.gene072832 | PPI |
| MS.gene072832 | MS.gene81617 | PPI |
| MS.gene057886 | MS.gene072832 | PPI |
| MS.gene070507 | MS.gene072832 | PPI |
| MS.gene072832 | MS.gene070503 | PPI |
| MS.gene070492 | MS.gene072832 | PPI |
| MS.gene072832 | MS.gene057884 | PPI |
| MS.gene81615 | MS.gene072832 | PPI |
| MS.gene81622 | MS.gene072832 | PPI |
| MS.gene072832 | MS.gene016758 | PPI |
| MS.gene016743 | MS.gene072832 | PPI |
| MS.gene072832 | MS.gene070511 | PPI |
| MS.gene057883 | MS.gene072832 | PPI |
| MS.gene016742 | MS.gene072832 | PPI |
| MS.gene070510 | MS.gene072832 | PPI |
| MS.gene072832 | MS.gene67840 | PPI |
| MS.gene37911 | MS.gene072832 | PPI |
| MS.gene070509 | MS.gene072832 | PPI |
| MS.gene81620 | MS.gene072832 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072832.t1 | MTR_5g011010 | 91.034 | 580 | 50 | 1 | 1 | 578 | 1 | 580 | 0.0 | 1073 |
| MS.gene072832.t1 | MTR_5g011020 | 86.213 | 544 | 73 | 1 | 36 | 577 | 1 | 544 | 0.0 | 978 |
| MS.gene072832.t1 | MTR_1g101770 | 57.168 | 579 | 234 | 6 | 1 | 572 | 1 | 572 | 0.0 | 650 |
| MS.gene072832.t1 | MTR_2g100070 | 52.712 | 590 | 256 | 6 | 1 | 572 | 4 | 588 | 0.0 | 618 |
| MS.gene072832.t1 | MTR_8g016320 | 53.206 | 577 | 248 | 6 | 9 | 572 | 13 | 580 | 0.0 | 596 |
| MS.gene072832.t1 | MTR_4g005860 | 45.438 | 548 | 257 | 8 | 36 | 571 | 42 | 559 | 4.19e-154 | 454 |
| MS.gene072832.t1 | MTR_1g101760 | 49.509 | 509 | 177 | 7 | 1 | 481 | 1 | 457 | 1.06e-148 | 436 |
| MS.gene072832.t1 | MTR_5g041340 | 42.123 | 584 | 262 | 14 | 8 | 578 | 18 | 538 | 7.35e-143 | 424 |
| MS.gene072832.t1 | MTR_5g024110 | 60.714 | 56 | 22 | 0 | 184 | 239 | 23 | 78 | 8.41e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072832.t1 | AT1G12570 | 60.900 | 578 | 199 | 9 | 6 | 572 | 8 | 569 | 0.0 | 705 |
| MS.gene072832.t1 | AT5G51950 | 56.775 | 583 | 238 | 5 | 4 | 578 | 5 | 581 | 0.0 | 663 |
| MS.gene072832.t1 | AT5G51950 | 56.559 | 587 | 235 | 6 | 4 | 578 | 5 | 583 | 0.0 | 662 |
| MS.gene072832.t1 | AT3G56060 | 58.707 | 557 | 216 | 5 | 22 | 572 | 20 | 568 | 0.0 | 661 |
| MS.gene072832.t1 | AT5G51950 | 58.439 | 551 | 218 | 4 | 36 | 578 | 1 | 548 | 0.0 | 650 |
| MS.gene072832.t1 | AT5G51930 | 55.154 | 553 | 234 | 3 | 29 | 576 | 7 | 550 | 0.0 | 604 |
| MS.gene072832.t1 | AT1G72970 | 54.323 | 532 | 234 | 3 | 46 | 572 | 61 | 588 | 0.0 | 593 |
| MS.gene072832.t1 | AT5G51930 | 53.654 | 561 | 238 | 4 | 6 | 561 | 39 | 582 | 0.0 | 588 |
| MS.gene072832.t1 | AT1G72970 | 53.107 | 531 | 215 | 3 | 46 | 572 | 61 | 561 | 0.0 | 564 |
| MS.gene072832.t1 | AT1G73050 | 48.168 | 546 | 240 | 8 | 35 | 572 | 41 | 551 | 1.20e-168 | 491 |
| MS.gene072832.t1 | AT1G14185 | 43.454 | 527 | 233 | 9 | 48 | 570 | 37 | 502 | 1.58e-135 | 404 |
| MS.gene072832.t1 | AT1G14190 | 42.135 | 534 | 245 | 9 | 48 | 577 | 16 | 489 | 5.13e-135 | 403 |
| MS.gene072832.t1 | AT1G14190 | 40.035 | 577 | 275 | 10 | 5 | 577 | 1 | 510 | 5.28e-135 | 404 |
Find 149 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGAGAGTGGTGGCTTTC+TGG | 0.074226 | 5.3:+4640591 | MS.gene072832:CDS |
| GCACCAAAACCCTATGATTT+TGG | 0.129479 | 5.3:-4637177 | None:intergenic |
| GATATGTTATTGTATTTAAA+TGG | 0.164664 | 5.3:-4643265 | None:intergenic |
| TAATTTGGTGTGCAGGTATA+TGG | 0.184392 | 5.3:+4643671 | MS.gene072832:intron |
| CACAAATACTTCAATGTCTT+TGG | 0.202029 | 5.3:+4643345 | MS.gene072832:CDS |
| TTTATCTATACAATATTAAT+TGG | 0.215754 | 5.3:-4643733 | None:intergenic |
| GGTAACATTTAACTACTTTC+AGG | 0.239795 | 5.3:+4643168 | MS.gene072832:CDS |
| ATCCACCTCTTAAAGCTTCT+TGG | 0.248345 | 5.3:-4643066 | None:intergenic |
| TAGTGAATGAATCATATAAA+TGG | 0.250727 | 5.3:+4640567 | MS.gene072832:CDS |
| GGCAATGGCAATCAGCATTT+AGG | 0.252686 | 5.3:+4640624 | MS.gene072832:CDS |
| ACACACTGCAGCTGATCTTT+TGG | 0.267372 | 5.3:+4640751 | MS.gene072832:CDS |
| TACTATGATTACATCATAAT+TGG | 0.268871 | 5.3:+4637115 | MS.gene072832:CDS |
| AACACCAAAGGCACTTAAAT+TGG | 0.269145 | 5.3:-4637239 | None:intergenic |
| TCCAATTTCAACAGGTCATT+TGG | 0.276460 | 5.3:+4643111 | MS.gene072832:CDS |
| TCCAAATGACCTGTTGAAAT+TGG | 0.285948 | 5.3:-4643112 | None:intergenic |
| GCACTTAAATTGGTTATGTT+TGG | 0.292211 | 5.3:-4637229 | None:intergenic |
| CAGTGTGTCTTTGACCATTT+TGG | 0.294524 | 5.3:-4640736 | None:intergenic |
| GAGCGTGGTGGATCACCTTA+TGG | 0.299780 | 5.3:+4637202 | MS.gene072832:CDS |
| GTTACCAAAGGGTTCTCATT+TGG | 0.324244 | 5.3:-4643151 | None:intergenic |
| GGTACAATCTTTGACCAAAA+TGG | 0.327169 | 5.3:+4640722 | MS.gene072832:CDS |
| GGTTGTTGATAATGATTATA+AGG | 0.328782 | 5.3:+4643432 | MS.gene072832:CDS |
| CAACACTGTCCCAAAATCAT+AGG | 0.334235 | 5.3:+4637167 | MS.gene072832:CDS |
| AACTCAAGAGCTCGTGTTCT+TGG | 0.335722 | 5.3:+4637325 | MS.gene072832:CDS |
| ATGCATCTTTCTAAGTCTCT+TGG | 0.342163 | 5.3:-4643193 | None:intergenic |
| GTCCCAAAATCATAGGGTTT+TGG | 0.342876 | 5.3:+4637174 | MS.gene072832:CDS |
| CTCTTAAAGCTTCTTGGTCT+AGG | 0.345612 | 5.3:-4643060 | None:intergenic |
| CTTCTGATGTTGAGTGGAAT+TGG | 0.347818 | 5.3:+4641924 | MS.gene072832:CDS |
| CTATGAGATGCACAATGTTT+AGG | 0.347912 | 5.3:-4625921 | None:intergenic |
| TTTACTTATGATCATATTCA+TGG | 0.365015 | 5.3:+4640686 | MS.gene072832:CDS |
| ATAACCAATTTAAGTGCCTT+TGG | 0.375662 | 5.3:+4637235 | MS.gene072832:CDS |
| ATTGAAGTATTTGTGTGTTT+AGG | 0.379914 | 5.3:-4643337 | None:intergenic |
| GATAATGATTATAAGGTTCT+TGG | 0.380549 | 5.3:+4643439 | MS.gene072832:CDS |
| GTTTCCCTCGTTTCGGTTGT+TGG | 0.384265 | 5.3:+4642068 | MS.gene072832:CDS |
| ATCTTGTTTACAACACATAA+AGG | 0.387469 | 5.3:+4640827 | MS.gene072832:CDS |
| TTGGAGCAGCACATCACCTT+AGG | 0.392870 | 5.3:+4641943 | MS.gene072832:CDS |
| TCTTCTACGGTCCTTTGCTT+TGG | 0.394930 | 5.3:-4643007 | None:intergenic |
| TGCATCTTTCTAAGTCTCTT+GGG | 0.395588 | 5.3:-4643192 | None:intergenic |
| TCTACGGTCCTTTGCTTTGG+TGG | 0.403160 | 5.3:-4643004 | None:intergenic |
| CAACGATTCATTTCTGAAGA+TGG | 0.409151 | 5.3:+4637295 | MS.gene072832:CDS |
| GGTAGAAGTTTCCCTCGTTT+CGG | 0.410531 | 5.3:+4642061 | MS.gene072832:CDS |
| GCAATGGCAATCAGCATTTA+GGG | 0.411044 | 5.3:+4640625 | MS.gene072832:CDS |
| GGGACATAAACACCGTTCAT+TGG | 0.415396 | 5.3:-4642026 | None:intergenic |
| AATTTGGTGTGCAGGTATAT+GGG | 0.420538 | 5.3:+4643672 | MS.gene072832:intron |
| AGGGATGGATTGTTGGAAGT+AGG | 0.420611 | 5.3:+4640644 | MS.gene072832:CDS |
| AATTCAAGGCCTGTTGCATA+TGG | 0.423302 | 5.3:+4641798 | MS.gene072832:CDS |
| AGTGAATGAATCATATAAAT+GGG | 0.434979 | 5.3:+4640568 | MS.gene072832:CDS |
| ATGGTGGTTGTCAAGTTGGT+AGG | 0.436196 | 5.3:+4643410 | MS.gene072832:CDS |
| TCTACCTTCAACTATTCTCC+TGG | 0.441618 | 5.3:+4643490 | MS.gene072832:CDS |
| GGACATAAACACCGTTCATT+GGG | 0.442992 | 5.3:-4642025 | None:intergenic |
| CTCGAGCCTTGTAGCGAGAT+CGG | 0.445785 | 5.3:+4642121 | MS.gene072832:CDS |
| TGATCATATTCATGGTACTA+AGG | 0.445964 | 5.3:+4640694 | MS.gene072832:CDS |
| ATAATTGGTGGTGGCACCGC+AGG | 0.447088 | 5.3:+4637130 | MS.gene072832:CDS |
| GTTATGTTTGGATTCCCATA+AGG | 0.448821 | 5.3:-4637217 | None:intergenic |
| CTTTACAATGTTTACTTCAA+AGG | 0.450532 | 5.3:+4642151 | MS.gene072832:CDS |
| AGCATTTAGGGATGGATTGT+TGG | 0.451769 | 5.3:+4640637 | MS.gene072832:CDS |
| GAGACACTGTGATGACTATA+TGG | 0.455474 | 5.3:+4643380 | MS.gene072832:CDS |
| CATATTCATGGTACTAAGGT+TGG | 0.459009 | 5.3:+4640698 | MS.gene072832:CDS |
| GTAATAGGTCCAATTTCAAC+AGG | 0.460226 | 5.3:+4643103 | MS.gene072832:CDS |
| AATTATGATGTAATCATAGT+AGG | 0.465553 | 5.3:-4637113 | None:intergenic |
| GGTGGAAGTTGTTTGAATGC+TGG | 0.469750 | 5.3:+4637349 | MS.gene072832:CDS |
| AAACAGAAAGATCAAATTCA+AGG | 0.470806 | 5.3:+4641784 | MS.gene072832:intron |
| CATAGGGCATACTTGAATCA+TGG | 0.471458 | 5.3:+4641852 | MS.gene072832:CDS |
| CAAGCCACTCTTATGATGCT+TGG | 0.471885 | 5.3:+4643523 | MS.gene072832:CDS |
| AGCGTGGTGGATCACCTTAT+GGG | 0.475507 | 5.3:+4637203 | MS.gene072832:CDS |
| AGAGCTCGTGTTCTTGGTGG+TGG | 0.475766 | 5.3:+4637331 | MS.gene072832:CDS |
| TACCATGGTGGTTGTCAAGT+TGG | 0.476390 | 5.3:+4643406 | MS.gene072832:CDS |
| TCGAGCCTTGTAGCGAGATC+GGG | 0.481634 | 5.3:+4642122 | MS.gene072832:CDS |
| AATACAACTCCATATGCAAC+AGG | 0.483363 | 5.3:-4641807 | None:intergenic |
| TTATGTCCCGTCTCCTTCCT+CGG | 0.485577 | 5.3:+4642040 | MS.gene072832:CDS |
| TGGCACCGCAGGGTGTCCTT+TGG | 0.491456 | 5.3:+4637141 | MS.gene072832:CDS |
| CTGTGTTACCTTACGTAGTG+AGG | 0.494800 | 5.3:-4637391 | None:intergenic |
| CTCTTCCCGATCTCGCTACA+AGG | 0.506746 | 5.3:-4642127 | None:intergenic |
| TCTGGCCTCCTATGCGGCAA+TGG | 0.506897 | 5.3:+4640609 | MS.gene072832:CDS |
| CATACTTGAATCATGGGACT+AGG | 0.514513 | 5.3:+4641859 | MS.gene072832:CDS |
| ATATAAATGGGTGGAGAGAG+TGG | 0.516063 | 5.3:+4640580 | MS.gene072832:CDS |
| AGTAGTTAAATGTTACCAAA+GGG | 0.518064 | 5.3:-4643162 | None:intergenic |
| CTAGACCAAGAAGCTTTAAG+AGG | 0.519070 | 5.3:+4643061 | MS.gene072832:CDS |
| TCATAAGTAAAGCCATTGTA+AGG | 0.519648 | 5.3:-4640674 | None:intergenic |
| TCAAGAGCTCGTGTTCTTGG+TGG | 0.520567 | 5.3:+4637328 | MS.gene072832:CDS |
| TGATCCAAATGAGAACCCTT+TGG | 0.520987 | 5.3:+4643147 | MS.gene072832:CDS |
| GACCAAGAAGCTTTAAGAGG+TGG | 0.521868 | 5.3:+4643064 | MS.gene072832:CDS |
| TCAGAAATGAATCGTTGAGC+AGG | 0.522804 | 5.3:-4637289 | None:intergenic |
| CCACTCAACATCAGAAGTTG+TGG | 0.523098 | 5.3:-4641918 | None:intergenic |
| GCTGATTGCCATTGCCGCAT+AGG | 0.525618 | 5.3:-4640617 | None:intergenic |
| CTAAAATGGGTGCTTTGTTG+TGG | 0.527843 | 5.3:+4625859 | None:intergenic |
| TTCAATGTAGCTGCCGAAGT+TGG | 0.528678 | 5.3:-4642096 | None:intergenic |
| CAAAGTTGCCACCAAAGCAA+AGG | 0.531704 | 5.3:+4642996 | MS.gene072832:CDS |
| CACTCAACATCAGAAGTTGT+GGG | 0.533196 | 5.3:-4641917 | None:intergenic |
| TTCAGAGAAGTCGGATGGGA+GGG | 0.534832 | 5.3:+4640539 | MS.gene072832:intron |
| GATTGCCATTGCCGCATAGG+AGG | 0.536258 | 5.3:-4640614 | None:intergenic |
| GTGGCTTGAGGATTAGCTCC+AGG | 0.536386 | 5.3:-4643508 | None:intergenic |
| AATCGTTGAGCAGGAGAGGA+AGG | 0.537483 | 5.3:-4637280 | None:intergenic |
| TGCACGAGGGACAGAACATA+GGG | 0.539350 | 5.3:+4641836 | MS.gene072832:CDS |
| TATGATTACATCATAATTGG+TGG | 0.541797 | 5.3:+4637118 | MS.gene072832:CDS |
| ATAGGGCATACTTGAATCAT+GGG | 0.543396 | 5.3:+4641853 | MS.gene072832:CDS |
| ATAGTATCCGCTGGTGCACT+AGG | 0.543415 | 5.3:+4641891 | MS.gene072832:CDS |
| TGGAGCAGCACATCACCTTA+GGG | 0.545444 | 5.3:+4641944 | MS.gene072832:CDS |
| GACTTAGAAAGATGCATACA+AGG | 0.549132 | 5.3:+4643199 | MS.gene072832:CDS |
| TGGGACAGTGTTGCAGCCAA+AGG | 0.549940 | 5.3:-4637157 | None:intergenic |
| AATGAATCGTTGAGCAGGAG+AGG | 0.550548 | 5.3:-4637284 | None:intergenic |
| CCTTCCAAGCATCATAAGAG+TGG | 0.552813 | 5.3:-4643527 | None:intergenic |
| CCACTCTTATGATGCTTGGA+AGG | 0.553215 | 5.3:+4643527 | MS.gene072832:CDS |
| TGTGTTACCTTACGTAGTGA+GGG | 0.555268 | 5.3:-4637390 | None:intergenic |
| TGGTGGTTGTCAAGTTGGTA+GGG | 0.555852 | 5.3:+4643411 | MS.gene072832:CDS |
| ATGCACGAGGGACAGAACAT+AGG | 0.556360 | 5.3:+4641835 | MS.gene072832:CDS |
| CTTCTACCGAGGAAGGAGAC+GGG | 0.556620 | 5.3:-4642046 | None:intergenic |
| AAGTAGTTAAATGTTACCAA+AGG | 0.558085 | 5.3:-4643163 | None:intergenic |
| AACGAGGGAAACTTCTACCG+AGG | 0.563059 | 5.3:-4642057 | None:intergenic |
| TGTAGTGTTAGATCAACCTC+TGG | 0.567055 | 5.3:+4641980 | MS.gene072832:CDS |
| TGCATATGGAGTTGTATTCA+AGG | 0.567127 | 5.3:+4641812 | MS.gene072832:CDS |
| AGCTCCAGGAGAATAGTTGA+AGG | 0.573988 | 5.3:-4643494 | None:intergenic |
| TAATCATAGTAGGATATGCT+TGG | 0.578437 | 5.3:-4637103 | None:intergenic |
| GATTACATCATAATTGGTGG+TGG | 0.578599 | 5.3:+4637121 | MS.gene072832:CDS |
| GATGCATTGCGCGTAATCGA+TGG | 0.579766 | 5.3:+4643466 | MS.gene072832:CDS |
| GTTGTTGGCATTACCAACTT+CGG | 0.581811 | 5.3:+4642083 | MS.gene072832:CDS |
| AACACTGTCCCAAAATCATA+GGG | 0.588880 | 5.3:+4637168 | MS.gene072832:CDS |
| ACTTCTACCGAGGAAGGAGA+CGG | 0.591971 | 5.3:-4642047 | None:intergenic |
| CACTGATGTTGTGTTCCCTA+AGG | 0.592785 | 5.3:-4641959 | None:intergenic |
| ATTCATGGTACTAAGGTTGG+AGG | 0.594217 | 5.3:+4640701 | MS.gene072832:CDS |
| TGGCAATCAGCATTTAGGGA+TGG | 0.595466 | 5.3:+4640629 | MS.gene072832:CDS |
| AATGAGATCATAGTATCCGC+TGG | 0.596422 | 5.3:+4641882 | MS.gene072832:CDS |
| GTGCAAGCCCTCACTACGTA+AGG | 0.598260 | 5.3:+4637383 | MS.gene072832:CDS |
| GTGTTAGATCAACCTCTGGT+AGG | 0.603080 | 5.3:+4641984 | MS.gene072832:CDS |
| AAACATTGTGCATCTCATAG+AGG | 0.610416 | 5.3:+4625924 | MS.gene072832:CDS |
| AGGGAAACTTCTACCGAGGA+AGG | 0.610577 | 5.3:-4642053 | None:intergenic |
| GTAGGAGTATTGCCTTACAA+TGG | 0.614325 | 5.3:+4640662 | MS.gene072832:CDS |
| TTTCAGAGAAGTCGGATGGG+AGG | 0.615969 | 5.3:+4640538 | MS.gene072832:intron |
| GACATTCCTTGTCCTACCAG+AGG | 0.617420 | 5.3:-4641996 | None:intergenic |
| CGATCTCGCTACAAGGCTCG+AGG | 0.630488 | 5.3:-4642120 | None:intergenic |
| TAATTGGTGGTGGCACCGCA+GGG | 0.631311 | 5.3:+4637131 | MS.gene072832:CDS |
| ATCAGAGAGTGCAACACCAA+AGG | 0.635333 | 5.3:-4637251 | None:intergenic |
| GAATGAATCATATAAATGGG+TGG | 0.647578 | 5.3:+4640571 | MS.gene072832:CDS |
| TGTAAACAAGATCTTATGAA+CGG | 0.649716 | 5.3:-4640816 | None:intergenic |
| ATGTCAGATAACCCAATGAA+CGG | 0.650288 | 5.3:+4642014 | MS.gene072832:CDS |
| TGGGCTACCTAGTGCACCAG+CGG | 0.650652 | 5.3:-4641898 | None:intergenic |
| CCACAACTTCTGATGTTGAG+TGG | 0.651050 | 5.3:+4641918 | MS.gene072832:CDS |
| GATCAACCTCTGGTAGGACA+AGG | 0.659119 | 5.3:+4641990 | MS.gene072832:CDS |
| TGGCTTTCTGGCCTCCTATG+CGG | 0.662618 | 5.3:+4640603 | MS.gene072832:CDS |
| TAATGCCAACAACCGAAACG+AGG | 0.664426 | 5.3:-4642073 | None:intergenic |
| TACCAACTTGACAACCACCA+TGG | 0.670597 | 5.3:-4643408 | None:intergenic |
| AATGCCAACAACCGAAACGA+GGG | 0.675853 | 5.3:-4642072 | None:intergenic |
| GTTGTATTCAAGGATGCACG+AGG | 0.682935 | 5.3:+4641822 | MS.gene072832:CDS |
| TGCAGCCAAAGGACACCCTG+CGG | 0.688010 | 5.3:-4637146 | None:intergenic |
| AGCATCATAAGAGTGGCTTG+AGG | 0.692872 | 5.3:-4643520 | None:intergenic |
| AAACAAGATCTTATGAACGG+TGG | 0.704729 | 5.3:-4640813 | None:intergenic |
| TAAATGGGTGGAGAGAGTGG+TGG | 0.740595 | 5.3:+4640583 | MS.gene072832:CDS |
| ATGACTATATGGCATTACCA+TGG | 0.746721 | 5.3:+4643391 | MS.gene072832:CDS |
| TTGTATTCAAGGATGCACGA+GGG | 0.759277 | 5.3:+4641823 | MS.gene072832:CDS |
| ACTATATGGCATTACCATGG+TGG | 0.762595 | 5.3:+4643394 | MS.gene072832:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 4625864 | 4643740 | 4625864 | ID=MS.gene072832 |
| chr5.3 | mRNA | 4625864 | 4643740 | 4625864 | ID=MS.gene072832.t1;Parent=MS.gene072832 |
| chr5.3 | exon | 4625864 | 4625945 | 4625864 | ID=MS.gene072832.t1.exon1;Parent=MS.gene072832.t1 |
| chr5.3 | CDS | 4625864 | 4625945 | 4625864 | ID=cds.MS.gene072832.t1;Parent=MS.gene072832.t1 |
| chr5.3 | exon | 4637059 | 4637404 | 4637059 | ID=MS.gene072832.t1.exon2;Parent=MS.gene072832.t1 |
| chr5.3 | CDS | 4637059 | 4637404 | 4637059 | ID=cds.MS.gene072832.t1;Parent=MS.gene072832.t1 |
| chr5.3 | exon | 4640544 | 4640848 | 4640544 | ID=MS.gene072832.t1.exon3;Parent=MS.gene072832.t1 |
| chr5.3 | CDS | 4640544 | 4640848 | 4640544 | ID=cds.MS.gene072832.t1;Parent=MS.gene072832.t1 |
| chr5.3 | exon | 4641790 | 4642172 | 4641790 | ID=MS.gene072832.t1.exon4;Parent=MS.gene072832.t1 |
| chr5.3 | CDS | 4641790 | 4642172 | 4641790 | ID=cds.MS.gene072832.t1;Parent=MS.gene072832.t1 |
| chr5.3 | exon | 4642983 | 4643548 | 4642983 | ID=MS.gene072832.t1.exon5;Parent=MS.gene072832.t1 |
| chr5.3 | CDS | 4642983 | 4643548 | 4642983 | ID=cds.MS.gene072832.t1;Parent=MS.gene072832.t1 |
| chr5.3 | exon | 4643686 | 4643740 | 4643686 | ID=MS.gene072832.t1.exon6;Parent=MS.gene072832.t1 |
| chr5.3 | CDS | 4643686 | 4643740 | 4643686 | ID=cds.MS.gene072832.t1;Parent=MS.gene072832.t1 |
| Gene Sequence |
| Protein sequence |
