Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073032.t1 | XP_003603563.1 | 97.7 | 393 | 8 | 1 | 1 | 393 | 1 | 392 | 5.50E-232 | 813.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073032.t1 | Q8VZQ0 | 60.4 | 376 | 149 | 0 | 11 | 386 | 11 | 386 | 1.1e-140 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073032.t1 | G7J2U5 | 97.7 | 393 | 8 | 1 | 1 | 393 | 1 | 392 | 3.9e-232 | 813.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene073032 | 0.802917 | 4.47E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene073032 | 0.805234 | 1.47E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene073032 | -0.806391 | 8.41E-50 | -1.69E-46 |
| MS.gene049424 | MS.gene073032 | 0.822827 | 1.92E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene073032 | 0.818575 | 1.82E-52 | -1.69E-46 |
| MS.gene050508 | MS.gene073032 | 0.804906 | 1.72E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene073032 | 0.802954 | 4.39E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene073032 | 0.842283 | 2.84E-58 | -1.69E-46 |
| MS.gene051368 | MS.gene073032 | 0.836815 | 7.50E-57 | -1.69E-46 |
| MS.gene052108 | MS.gene073032 | 0.806121 | 9.59E-50 | -1.69E-46 |
| MS.gene052500 | MS.gene073032 | 0.833442 | 5.32E-56 | -1.69E-46 |
| MS.gene052502 | MS.gene073032 | 0.84351 | 1.34E-58 | -1.69E-46 |
| MS.gene052674 | MS.gene073032 | 0.821813 | 3.31E-53 | -1.69E-46 |
| MS.gene052675 | MS.gene073032 | 0.821087 | 4.87E-53 | -1.69E-46 |
| MS.gene052677 | MS.gene073032 | 0.824032 | 1.01E-53 | -1.69E-46 |
| MS.gene052824 | MS.gene073032 | 0.814589 | 1.43E-51 | -1.69E-46 |
| MS.gene052826 | MS.gene073032 | 0.836427 | 9.42E-57 | -1.69E-46 |
| MS.gene052954 | MS.gene073032 | 0.844046 | 9.63E-59 | -1.69E-46 |
| MS.gene053963 | MS.gene073032 | 0.818171 | 2.25E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene073032 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene073032 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene055225 | MS.gene073032 | 0.820563 | 6.42E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene073032 | 0.828009 | 1.14E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene073032 | 0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene056064 | MS.gene073032 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene073032 | 0.808676 | 2.76E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene073032 | 0.812898 | 3.36E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene073032 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene073032 | 0.816078 | 6.66E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene073032 | 0.824565 | 7.53E-54 | -1.69E-46 |
| MS.gene060850 | MS.gene073032 | 0.8233 | 1.49E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene073032 | 0.834998 | 2.17E-56 | -1.69E-46 |
| MS.gene060852 | MS.gene073032 | 0.835417 | 1.70E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073032.t1 | MTR_3g109120 | 97.710 | 393 | 8 | 1 | 1 | 393 | 1 | 392 | 0.0 | 792 |
| MS.gene073032.t1 | MTR_8g064810 | 39.452 | 365 | 220 | 1 | 20 | 383 | 175 | 539 | 1.87e-98 | 304 |
| MS.gene073032.t1 | MTR_8g064810 | 36.474 | 329 | 204 | 5 | 14 | 339 | 9 | 335 | 3.66e-66 | 220 |
| MS.gene073032.t1 | MTR_3g114530 | 36.935 | 398 | 232 | 6 | 12 | 390 | 32 | 429 | 1.56e-82 | 259 |
| MS.gene073032.t1 | MTR_8g064840 | 37.500 | 312 | 194 | 1 | 27 | 337 | 182 | 493 | 1.72e-75 | 243 |
| MS.gene073032.t1 | MTR_8g064840 | 32.979 | 376 | 240 | 7 | 14 | 385 | 9 | 376 | 4.46e-65 | 216 |
| MS.gene073032.t1 | MTR_8g064840 | 36.538 | 156 | 97 | 2 | 20 | 173 | 335 | 490 | 1.50e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073032.t1 | AT4G31240 | 60.372 | 376 | 149 | 0 | 11 | 386 | 11 | 386 | 6.22e-174 | 491 |
| MS.gene073032.t1 | AT4G31240 | 60.372 | 376 | 149 | 0 | 11 | 386 | 11 | 386 | 6.22e-174 | 491 |
| MS.gene073032.t1 | AT1G60420 | 37.432 | 366 | 226 | 3 | 20 | 383 | 179 | 543 | 5.43e-94 | 293 |
| MS.gene073032.t1 | AT1G60420 | 36.975 | 357 | 215 | 6 | 13 | 363 | 12 | 364 | 2.50e-68 | 226 |
Find 75 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGACATTGAATTCTTTA+AGG | 0.137026 | 3.4:+94436650 | None:intergenic |
| GGACGCAACTTTCTCATTTC+AGG | 0.197560 | 3.4:-94437049 | MS.gene073032:CDS |
| CTTATCCTCGATTCAGTAAA+TGG | 0.202499 | 3.4:+94436457 | None:intergenic |
| GCATGAACATGTACTTAAAT+TGG | 0.232241 | 3.4:-94436371 | MS.gene073032:CDS |
| TGCCTTGTTCTGTCTTCATA+TGG | 0.269042 | 3.4:+94436601 | None:intergenic |
| AAAACGCGAAGAAGTAAATT+TGG | 0.274011 | 3.4:-94437092 | MS.gene073032:CDS |
| CCTTCCCTTCACAAGATAAA+AGG | 0.287538 | 3.4:+94437736 | None:intergenic |
| AAGCCTCTCCTTCCTTTCTC+AGG | 0.320765 | 3.4:+94436419 | None:intergenic |
| GAAGACTGATTGATAGATAT+CGG | 0.330938 | 3.4:-94437261 | MS.gene073032:CDS |
| ATTGAGTGGATTGAGGATTA+TGG | 0.350211 | 3.4:-94437175 | MS.gene073032:CDS |
| GTAAGAAACAAGGCAAGTTC+TGG | 0.355815 | 3.4:-94436318 | MS.gene073032:CDS |
| ACATGTACTTAAATTGGATA+TGG | 0.376466 | 3.4:-94436365 | MS.gene073032:CDS |
| GGAAAAGTCATTAGTTTGAA+TGG | 0.389791 | 3.4:-94436517 | MS.gene073032:CDS |
| AGGAGAGGCTTTGCCTCAAC+AGG | 0.399694 | 3.4:-94436407 | MS.gene073032:CDS |
| GTTAAGGCATCAGAACATAA+TGG | 0.434095 | 3.4:+94437214 | None:intergenic |
| AACTAGCCGGGAAAACTGTT+GGG | 0.444358 | 3.4:-94436801 | MS.gene073032:CDS |
| GCCTTGTTCTGTCTTCATAT+GGG | 0.446620 | 3.4:+94436602 | None:intergenic |
| AGAATCACATACATATGCTT+TGG | 0.462446 | 3.4:+94436342 | None:intergenic |
| GGCTTTGCCTCAACAGGTTG+AGG | 0.481541 | 3.4:-94436401 | MS.gene073032:CDS |
| GAACTAGCCGGGAAAACTGT+TGG | 0.484272 | 3.4:-94436802 | MS.gene073032:CDS |
| TACCCTTGTCTGATTGCAAT+GGG | 0.484415 | 3.4:-94437492 | MS.gene073032:CDS |
| GAACATAATGGAATGAATGA+TGG | 0.484930 | 3.4:+94437226 | None:intergenic |
| CCTTTGACCATGACGAGGAT+GGG | 0.489378 | 3.4:-94437345 | MS.gene073032:CDS |
| TTTAGAAGCGGCCCTGAGAA+AGG | 0.496110 | 3.4:-94436431 | MS.gene073032:CDS |
| TCATGTCTCTTCCTTGTGAA+AGG | 0.497231 | 3.4:+94437139 | None:intergenic |
| AAAAGCTTCTGCTCCGTATG+AGG | 0.498346 | 3.4:+94436480 | None:intergenic |
| AAACATGATTGAGTGGATTG+AGG | 0.505573 | 3.4:-94437182 | MS.gene073032:CDS |
| TCCTTTGACCATGACGAGGA+TGG | 0.507388 | 3.4:-94437346 | MS.gene073032:CDS |
| TTGACCTTCTCAAGACAACT+AGG | 0.509346 | 3.4:+94436259 | None:intergenic |
| GGTCCAATGAAAACCAAAGC+TGG | 0.509568 | 3.4:+94436544 | None:intergenic |
| AGCCTCTCCTTCCTTTCTCA+GGG | 0.514000 | 3.4:+94436420 | None:intergenic |
| AACAATCTGAAGGATACAAA+AGG | 0.521437 | 3.4:-94436712 | MS.gene073032:CDS |
| AACATAATGGAATGAATGAT+GGG | 0.522116 | 3.4:+94437227 | None:intergenic |
| CATTTCAGGAGATGATAGAA+AGG | 0.533685 | 3.4:-94437035 | MS.gene073032:intron |
| AAGACTGATTGATAGATATC+GGG | 0.537244 | 3.4:-94437260 | MS.gene073032:CDS |
| GTGCTTGTATCTGAACTAGC+CGG | 0.540763 | 3.4:-94436814 | MS.gene073032:CDS |
| TGACAGCTTTGATGTTCTGA+AGG | 0.544346 | 3.4:-94437784 | MS.gene073032:CDS |
| ATTCTATTCTCTACCAACAT+TGG | 0.544674 | 3.4:+94436230 | None:intergenic |
| CCCATCCTCGTCATGGTCAA+AGG | 0.545313 | 3.4:+94437345 | None:intergenic |
| TCATCCTAGTTGTCTTGAGA+AGG | 0.553361 | 3.4:-94436263 | MS.gene073032:CDS |
| CTGATGCGTTTCCTTTCACA+AGG | 0.553820 | 3.4:-94437150 | MS.gene073032:CDS |
| TGCTTGTATCTGAACTAGCC+GGG | 0.560596 | 3.4:-94436813 | MS.gene073032:CDS |
| CTTTAAACCCATCCTCGTCA+TGG | 0.563938 | 3.4:+94437338 | None:intergenic |
| TCAACAGAACTAGCATGCCT+TGG | 0.565333 | 3.4:-94436633 | MS.gene073032:CDS |
| TTTCTGAGGCTCTTATGGCA+GGG | 0.573123 | 3.4:-94437833 | None:intergenic |
| TTTCCCATTGCAATCAGACA+AGG | 0.573755 | 3.4:+94437489 | None:intergenic |
| GTACCCTTGTCTGATTGCAA+TGG | 0.575133 | 3.4:-94437493 | MS.gene073032:CDS |
| CAGTTCATGATCTCCTCATA+CGG | 0.577540 | 3.4:-94436493 | MS.gene073032:CDS |
| GAAGCGGCCCTGAGAAAGGA+AGG | 0.578716 | 3.4:-94436427 | MS.gene073032:CDS |
| TATGAAACACTGAGAAAGAG+AGG | 0.589929 | 3.4:-94437394 | MS.gene073032:CDS |
| AGGTCAACAATGACCAATGT+TGG | 0.598627 | 3.4:-94436243 | MS.gene073032:CDS |
| TTGATATCCTCAACCTGTTG+AGG | 0.598633 | 3.4:+94436394 | None:intergenic |
| GTATGCATCTGCAAGTTGAA+TGG | 0.602371 | 3.4:+94436735 | None:intergenic |
| TCATAAAGATCAACAAGATG+AGG | 0.609670 | 3.4:+94437412 | None:intergenic |
| CATCTCCTTTGACCATGACG+AGG | 0.615057 | 3.4:-94437350 | MS.gene073032:CDS |
| TCCCATATGAAGACAGAACA+AGG | 0.616146 | 3.4:-94436603 | MS.gene073032:CDS |
| TTGGATGAATTATTGACACA+TGG | 0.617894 | 3.4:-94437073 | MS.gene073032:CDS |
| TGAGGAATGAAAAGTCTGCA+AGG | 0.618484 | 3.4:+94437430 | None:intergenic |
| ATCTGCAAGTTGAATGGTGA+AGG | 0.619741 | 3.4:+94436741 | None:intergenic |
| ATGAAACACTGAGAAAGAGA+GGG | 0.621375 | 3.4:-94437393 | MS.gene073032:CDS |
| GGCCCTGAGAAAGGAAGGAG+AGG | 0.626905 | 3.4:-94436422 | MS.gene073032:CDS |
| TCTGCAAGGTCTACACCAGT+TGG | 0.627906 | 3.4:+94437444 | None:intergenic |
| CTAAAACAATCTCAAAGCAG+TGG | 0.631342 | 3.4:+94436689 | None:intergenic |
| TGAATGGTGAAGGCATGACA+AGG | 0.638241 | 3.4:+94436751 | None:intergenic |
| GATGAATTATTGACACATGG+AGG | 0.644306 | 3.4:-94437070 | MS.gene073032:CDS |
| TTCCCATTGCAATCAGACAA+GGG | 0.647330 | 3.4:+94437490 | None:intergenic |
| TGTGATTCTTGTAAGAAACA+AGG | 0.649097 | 3.4:-94436328 | MS.gene073032:CDS |
| AGATGCATACAACAATCTGA+AGG | 0.652915 | 3.4:-94436722 | MS.gene073032:CDS |
| TTTCACAAGGAAGAGACATG+AGG | 0.657371 | 3.4:-94437137 | MS.gene073032:CDS |
| TCATATGGGATAGCAAGCCA+AGG | 0.668435 | 3.4:+94436616 | None:intergenic |
| TCAAATGGGACAGCTAGCCA+CGG | 0.675819 | 3.4:+94437298 | None:intergenic |
| TTATATCAAAGATTCTACAG+AGG | 0.694670 | 3.4:+94436575 | None:intergenic |
| AACACATCAAGAGTATGCCG+TGG | 0.699138 | 3.4:-94437315 | MS.gene073032:CDS |
| ATGGTGAAGGCATGACAAGG+AGG | 0.703664 | 3.4:+94436754 | None:intergenic |
| GAGGATAAGAGATTTAGAAG+CGG | 0.713748 | 3.4:-94436443 | MS.gene073032:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAAAATTCCAGCTT+TGG | - | chr3.4:94437502-94437521 | MS.gene073032:intron | 20.0% |
| !!! | TATTCAATTTTGCATCAAAT+GGG | + | chr3.4:94436778-94436797 | None:intergenic | 20.0% |
| ! | ACATGTACTTAAATTGGATA+TGG | - | chr3.4:94437694-94437713 | MS.gene073032:intron | 25.0% |
| ! | AGTAAACAAAAACTTCAAGT+AGG | + | chr3.4:94437061-94437080 | None:intergenic | 25.0% |
| ! | GTAAACAAAAACTTCAAGTA+GGG | + | chr3.4:94437060-94437079 | None:intergenic | 25.0% |
| ! | TCACAAAACTAAGCAAATTA+TGG | + | chr3.4:94436498-94436517 | None:intergenic | 25.0% |
| ! | TGTTGACATTGAATTCTTTA+AGG | + | chr3.4:94437412-94437431 | None:intergenic | 25.0% |
| ! | TTATATCAAAGATTCTACAG+AGG | + | chr3.4:94437487-94437506 | None:intergenic | 25.0% |
| !! | AACATAATGGAATGAATGAT+GGG | + | chr3.4:94436835-94436854 | None:intergenic | 25.0% |
| !! | CTATTCAATTTTGCATCAAA+TGG | + | chr3.4:94436779-94436798 | None:intergenic | 25.0% |
| !! | GTAATCACGATTTTAAATTG+TGG | - | chr3.4:94437089-94437108 | MS.gene073032:CDS | 25.0% |
| !!! | TGTTTTAGTTTCAACAGATA+GGG | - | chr3.4:94437385-94437404 | MS.gene073032:CDS | 25.0% |
| !!! | TTGTTTTAGTTTCAACAGAT+AGG | - | chr3.4:94437384-94437403 | MS.gene073032:CDS | 25.0% |
| AAAACGCGAAGAAGTAAATT+TGG | - | chr3.4:94436967-94436986 | MS.gene073032:intron | 30.0% | |
| AACAATCTGAAGGATACAAA+AGG | - | chr3.4:94437347-94437366 | MS.gene073032:CDS | 30.0% | |
| AAGACTGATTGATAGATATC+GGG | - | chr3.4:94436799-94436818 | MS.gene073032:CDS | 30.0% | |
| AGAATCACATACATATGCTT+TGG | + | chr3.4:94437720-94437739 | None:intergenic | 30.0% | |
| CATCTTTGAATCATGAGATT+AGG | - | chr3.4:94436544-94436563 | MS.gene073032:CDS | 30.0% | |
| CTAATCTCATGATTCAAAGA+TGG | + | chr3.4:94436546-94436565 | None:intergenic | 30.0% | |
| GAAGACTGATTGATAGATAT+CGG | - | chr3.4:94436798-94436817 | MS.gene073032:CDS | 30.0% | |
| GCATGAACATGTACTTAAAT+TGG | - | chr3.4:94437688-94437707 | MS.gene073032:intron | 30.0% | |
| TCATAAAGATCAACAAGATG+AGG | + | chr3.4:94436650-94436669 | None:intergenic | 30.0% | |
| TGTGATTCTTGTAAGAAACA+AGG | - | chr3.4:94437731-94437750 | MS.gene073032:intron | 30.0% | |
| TTGACAAAAACATGATTGAG+TGG | - | chr3.4:94436870-94436889 | MS.gene073032:intron | 30.0% | |
| TTGGATGAATTATTGACACA+TGG | - | chr3.4:94436986-94437005 | MS.gene073032:intron | 30.0% | |
| ! | AAACTAATGACTTTTCCATC+TGG | + | chr3.4:94437539-94437558 | None:intergenic | 30.0% |
| ! | ACGATTTTAAATTGTGGTTG+CGG | - | chr3.4:94437095-94437114 | MS.gene073032:CDS | 30.0% |
| ! | AGTTCCTTTTATCTTGTGAA+GGG | - | chr3.4:94436319-94436338 | MS.gene073032:CDS | 30.0% |
| ! | GAACATAATGGAATGAATGA+TGG | + | chr3.4:94436836-94436855 | None:intergenic | 30.0% |
| ! | GGAAAAGTCATTAGTTTGAA+TGG | - | chr3.4:94437542-94437561 | MS.gene073032:intron | 30.0% |
| ! | TTCGCGTTTTCTTTTATCTA+TGG | + | chr3.4:94436957-94436976 | None:intergenic | 30.0% |
| !! | CATGTTTTTGTCAACAGTTA+AGG | + | chr3.4:94436864-94436883 | None:intergenic | 30.0% |
| !!! | AAAACTGTTGGGCTATTTTT+CGG | - | chr3.4:94437269-94437288 | MS.gene073032:CDS | 30.0% |
| !!! | TTTGCTTAGTTTTGTGATCT+TGG | - | chr3.4:94436501-94436520 | MS.gene073032:CDS | 30.0% |
| AGATGCATACAACAATCTGA+AGG | - | chr3.4:94437337-94437356 | MS.gene073032:CDS | 35.0% | |
| ATGAAACACTGAGAAAGAGA+GGG | - | chr3.4:94436666-94436685 | MS.gene073032:CDS | 35.0% | |
| CATTTCAGGAGATGATAGAA+AGG | - | chr3.4:94437024-94437043 | MS.gene073032:intron | 35.0% | |
| CTAAAACAATCTCAAAGCAG+TGG | + | chr3.4:94437373-94437392 | None:intergenic | 35.0% | |
| CTTATCCTCGATTCAGTAAA+TGG | + | chr3.4:94437605-94437624 | None:intergenic | 35.0% | |
| GAATTCCATAAATGCACTCT+AGG | + | chr3.4:94437181-94437200 | None:intergenic | 35.0% | |
| GAGGATAAGAGATTTAGAAG+CGG | - | chr3.4:94437616-94437635 | MS.gene073032:intron | 35.0% | |
| GATGAATTATTGACACATGG+AGG | - | chr3.4:94436989-94437008 | MS.gene073032:intron | 35.0% | |
| TATGAAACACTGAGAAAGAG+AGG | - | chr3.4:94436665-94436684 | MS.gene073032:CDS | 35.0% | |
| ! | CTTTTCCATTTACTGAATCG+AGG | - | chr3.4:94437597-94437616 | MS.gene073032:intron | 35.0% |
| ! | GAGTTCCTTTTATCTTGTGA+AGG | - | chr3.4:94436318-94436337 | MS.gene073032:CDS | 35.0% |
| ! | GTTAAGGCATCAGAACATAA+TGG | + | chr3.4:94436848-94436867 | None:intergenic | 35.0% |
| !! | AAACATGATTGAGTGGATTG+AGG | - | chr3.4:94436877-94436896 | MS.gene073032:intron | 35.0% |
| !! | ATTGAGTGGATTGAGGATTA+TGG | - | chr3.4:94436884-94436903 | MS.gene073032:intron | 35.0% |
| !!! | ATTCCAGCTTTGGTTTTCAT+TGG | - | chr3.4:94437512-94437531 | MS.gene073032:intron | 35.0% |
| AGGTCAACAATGACCAATGT+TGG | - | chr3.4:94437816-94437835 | MS.gene073032:CDS | 40.0% | |
| ATGTTTCATCGTTGCATTGC+AGG | - | chr3.4:94437223-94437242 | MS.gene073032:CDS | 40.0% | |
| ATTGTGGTTGCGGTCAAATA+TGG | - | chr3.4:94437105-94437124 | MS.gene073032:CDS | 40.0% | |
| CAAGTCCTAGAGTGCATTTA+TGG | - | chr3.4:94437173-94437192 | MS.gene073032:CDS | 40.0% | |
| CAGTTCATGATCTCCTCATA+CGG | - | chr3.4:94437566-94437585 | MS.gene073032:intron | 40.0% | |
| CCTTCCCTTCACAAGATAAA+AGG | + | chr3.4:94436326-94436345 | None:intergenic | 40.0% | |
| GTAAGAAACAAGGCAAGTTC+TGG | - | chr3.4:94437741-94437760 | MS.gene073032:CDS | 40.0% | |
| TACCCTTGTCTGATTGCAAT+GGG | - | chr3.4:94436567-94436586 | MS.gene073032:CDS | 40.0% | |
| TCATCCTAGTTGTCTTGAGA+AGG | - | chr3.4:94437796-94437815 | MS.gene073032:CDS | 40.0% | |
| TCATGTCTCTTCCTTGTGAA+AGG | + | chr3.4:94436923-94436942 | None:intergenic | 40.0% | |
| TCCCATATGAAGACAGAACA+AGG | - | chr3.4:94437456-94437475 | MS.gene073032:CDS | 40.0% | |
| TGAGGAATGAAAAGTCTGCA+AGG | + | chr3.4:94436632-94436651 | None:intergenic | 40.0% | |
| TTCCCATTGCAATCAGACAA+GGG | + | chr3.4:94436572-94436591 | None:intergenic | 40.0% | |
| TTGACCTTCTCAAGACAACT+AGG | + | chr3.4:94437803-94437822 | None:intergenic | 40.0% | |
| TTGATATCCTCAACCTGTTG+AGG | + | chr3.4:94437668-94437687 | None:intergenic | 40.0% | |
| TTTCACAAGGAAGAGACATG+AGG | - | chr3.4:94436922-94436941 | MS.gene073032:intron | 40.0% | |
| TTTCCCATTGCAATCAGACA+AGG | + | chr3.4:94436573-94436592 | None:intergenic | 40.0% | |
| ! | AAATAGCCCAACAGTTTTCC+CGG | + | chr3.4:94437267-94437286 | None:intergenic | 40.0% |
| ! | ATCTGCAAGTTGAATGGTGA+AGG | + | chr3.4:94437321-94437340 | None:intergenic | 40.0% |
| ! | CCTTTTATCTTGTGAAGGGA+AGG | - | chr3.4:94436323-94436342 | MS.gene073032:CDS | 40.0% |
| ! | GCCTTGTTCTGTCTTCATAT+GGG | + | chr3.4:94437460-94437479 | None:intergenic | 40.0% |
| ! | GTATGCATCTGCAAGTTGAA+TGG | + | chr3.4:94437327-94437346 | None:intergenic | 40.0% |
| ! | TGACAGCTTTGATGTTCTGA+AGG | - | chr3.4:94436275-94436294 | MS.gene073032:CDS | 40.0% |
| ! | TGCCTTGTTCTGTCTTCATA+TGG | + | chr3.4:94437461-94437480 | None:intergenic | 40.0% |
| !! | CAGATTTTAGTGTCGCAACA+GGG | + | chr3.4:94436458-94436477 | None:intergenic | 40.0% |
| !! | GTCTATTTTTCTCTGCCAAC+TGG | - | chr3.4:94436600-94436619 | MS.gene073032:CDS | 40.0% |
| !! | TTGGTTTTCATTGGACCAGA+TGG | - | chr3.4:94437521-94437540 | MS.gene073032:intron | 40.0% |
| AAAAGCTTCTGCTCCGTATG+AGG | + | chr3.4:94437582-94437601 | None:intergenic | 45.0% | |
| AACTAGCCGGGAAAACTGTT+GGG | - | chr3.4:94437258-94437277 | MS.gene073032:CDS | 45.0% | |
| CCTGTTGCGACACTAAAATC+TGG | - | chr3.4:94436456-94436475 | MS.gene073032:CDS | 45.0% | |
| CTGATGCGTTTCCTTTCACA+AGG | - | chr3.4:94436909-94436928 | MS.gene073032:intron | 45.0% | |
| CTTTAAACCCATCCTCGTCA+TGG | + | chr3.4:94436724-94436743 | None:intergenic | 45.0% | |
| GGACGCAACTTTCTCATTTC+AGG | - | chr3.4:94437010-94437029 | MS.gene073032:intron | 45.0% | |
| GGTCCAATGAAAACCAAAGC+TGG | + | chr3.4:94437518-94437537 | None:intergenic | 45.0% | |
| GTACCCTTGTCTGATTGCAA+TGG | - | chr3.4:94436566-94436585 | MS.gene073032:CDS | 45.0% | |
| GTGCTTGTATCTGAACTAGC+CGG | - | chr3.4:94437245-94437264 | MS.gene073032:CDS | 45.0% | |
| TCAACAGAACTAGCATGCCT+TGG | - | chr3.4:94437426-94437445 | MS.gene073032:CDS | 45.0% | |
| TCATATGGGATAGCAAGCCA+AGG | + | chr3.4:94437446-94437465 | None:intergenic | 45.0% | |
| TGCTTGTATCTGAACTAGCC+GGG | - | chr3.4:94437246-94437265 | MS.gene073032:CDS | 45.0% | |
| ! | AACACATCAAGAGTATGCCG+TGG | - | chr3.4:94436744-94436763 | MS.gene073032:CDS | 45.0% |
| ! | CTGAAGGTTTTTGCAGCTGA+AGG | - | chr3.4:94436291-94436310 | MS.gene073032:CDS | 45.0% |
| ! | TGAATGGTGAAGGCATGACA+AGG | + | chr3.4:94437311-94437330 | None:intergenic | 45.0% |
| !! | CACTCTAGGACTTGACATCA+AGG | + | chr3.4:94437167-94437186 | None:intergenic | 45.0% |
| !! | CCAGATTTTAGTGTCGCAAC+AGG | + | chr3.4:94436459-94436478 | None:intergenic | 45.0% |
| !!! | GGCTATTTTTCGGTGCTTAC+TGG | - | chr3.4:94437279-94437298 | MS.gene073032:CDS | 45.0% |
| AAGCCTCTCCTTCCTTTCTC+AGG | + | chr3.4:94437643-94437662 | None:intergenic | 50.0% | |
| AGCCTCTCCTTCCTTTCTCA+GGG | + | chr3.4:94437642-94437661 | None:intergenic | 50.0% | |
| CATCTCCTTTGACCATGACG+AGG | - | chr3.4:94436709-94436728 | MS.gene073032:CDS | 50.0% | |
| CCTTTGACCATGACGAGGAT+GGG | - | chr3.4:94436714-94436733 | MS.gene073032:CDS | 50.0% | |
| CGGTCAAATATGGCTGATGC+AGG | - | chr3.4:94437115-94437134 | MS.gene073032:CDS | 50.0% | |
| GAACTAGCCGGGAAAACTGT+TGG | - | chr3.4:94437257-94437276 | MS.gene073032:CDS | 50.0% | |
| TCAAATGGGACAGCTAGCCA+CGG | + | chr3.4:94436764-94436783 | None:intergenic | 50.0% | |
| TCCTTTGACCATGACGAGGA+TGG | - | chr3.4:94436713-94436732 | MS.gene073032:CDS | 50.0% | |
| TCTGCAAGGTCTACACCAGT+TGG | + | chr3.4:94436618-94436637 | None:intergenic | 50.0% | |
| TTTAGAAGCGGCCCTGAGAA+AGG | - | chr3.4:94437628-94437647 | MS.gene073032:intron | 50.0% | |
| ! | ATGGTGAAGGCATGACAAGG+AGG | + | chr3.4:94437308-94437327 | None:intergenic | 50.0% |
| AGGAGAGGCTTTGCCTCAAC+AGG | - | chr3.4:94437652-94437671 | MS.gene073032:intron | 55.0% | |
| CCCATCCTCGTCATGGTCAA+AGG | + | chr3.4:94436717-94436736 | None:intergenic | 55.0% | |
| GGCTTTGCCTCAACAGGTTG+AGG | - | chr3.4:94437658-94437677 | MS.gene073032:intron | 55.0% | |
| ! | ATGCAGGCGTTGCTATTGCG+TGG | - | chr3.4:94437131-94437150 | MS.gene073032:CDS | 55.0% |
| GAAGCGGCCCTGAGAAAGGA+AGG | - | chr3.4:94437632-94437651 | MS.gene073032:intron | 60.0% | |
| GGCCCTGAGAAAGGAAGGAG+AGG | - | chr3.4:94437637-94437656 | MS.gene073032:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94436240 | 94437841 | 94436240 | ID=MS.gene073032 |
| chr3.4 | mRNA | 94436240 | 94437841 | 94436240 | ID=MS.gene073032.t1;Parent=MS.gene073032 |
| chr3.4 | exon | 94437737 | 94437841 | 94437737 | ID=MS.gene073032.t1.exon1;Parent=MS.gene073032.t1 |
| chr3.4 | CDS | 94437737 | 94437841 | 94437737 | ID=cds.MS.gene073032.t1;Parent=MS.gene073032.t1 |
| chr3.4 | exon | 94437036 | 94437515 | 94437036 | ID=MS.gene073032.t1.exon2;Parent=MS.gene073032.t1 |
| chr3.4 | CDS | 94437036 | 94437515 | 94437036 | ID=cds.MS.gene073032.t1;Parent=MS.gene073032.t1 |
| chr3.4 | exon | 94436240 | 94436836 | 94436240 | ID=MS.gene073032.t1.exon3;Parent=MS.gene073032.t1 |
| chr3.4 | CDS | 94436240 | 94436836 | 94436240 | ID=cds.MS.gene073032.t1;Parent=MS.gene073032.t1 |
| Gene Sequence |
| Protein sequence |
