Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07420.t1 | RHN45016.1 | 92.6 | 310 | 23 | 0 | 387 | 696 | 420 | 729 | 2.40E-174 | 622.5 |
| MS.gene07420.t1 | RHN45016.1 | 89.2 | 37 | 4 | 0 | 1 | 37 | 1 | 37 | 1.80E-07 | 68.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07420.t1 | Q9Y222 | 25.8 | 256 | 173 | 7 | 417 | 667 | 156 | 399 | 5.5e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07420.t1 | A0A396GV57 | 92.6 | 310 | 23 | 0 | 387 | 696 | 420 | 729 | 1.7e-174 | 622.5 |
| MS.gene07420.t1 | A0A396GV57 | 89.2 | 37 | 4 | 0 | 1 | 37 | 1 | 37 | 1.3e-07 | 68.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene07420.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene07420 | 0.8269 | 2.10E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene07420 | 0.829144 | 6.07E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene07420 | 0.800877 | 1.17E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene07420 | 0.824584 | 7.46E-54 | -1.69E-46 |
| MS.gene050737 | MS.gene07420 | 0.820618 | 6.24E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene07420 | 0.832728 | 8.01E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene07420 | 0.809248 | 2.08E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene07420 | 0.818546 | 1.85E-52 | -1.69E-46 |
| MS.gene051363 | MS.gene07420 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene07420 | 0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene07420 | 0.816609 | 5.06E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene07420 | 0.815471 | 9.09E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene07420 | 0.820639 | 6.17E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene07420 | 0.860091 | 2.63E-63 | -1.69E-46 |
| MS.gene052896 | MS.gene07420 | 0.812461 | 4.19E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene07420 | 0.864037 | 1.62E-64 | -1.69E-46 |
| MS.gene054582 | MS.gene07420 | 0.802289 | 6.02E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene07420 | 0.821495 | 3.92E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene07420 | 0.812508 | 4.09E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene07420 | 0.824064 | 9.88E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene07420 | 0.812206 | 4.76E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene07420 | 0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene07420 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene07420 | 0.800668 | 1.29E-48 | -1.69E-46 |
| MS.gene058783 | MS.gene07420 | 0.838203 | 3.31E-57 | -1.69E-46 |
| MS.gene059151 | MS.gene07420 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene059283 | MS.gene07420 | 0.813477 | 2.51E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene07420 | 0.873215 | 1.75E-67 | -1.69E-46 |
| MS.gene060322 | MS.gene07420 | 0.80834 | 3.25E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene07420 | 0.819974 | 8.76E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene07420 | 0.80136 | 9.34E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene07420 | 0.805224 | 1.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07420.t1 | MTR_8g077990 | 80.650 | 739 | 54 | 8 | 1 | 696 | 1 | 693 | 0.0 | 1012 |
| MS.gene07420.t1 | MTR_1g076600 | 96.040 | 101 | 4 | 0 | 596 | 696 | 55 | 155 | 3.18e-67 | 218 |
| MS.gene07420.t1 | MTR_7g029435 | 94.565 | 92 | 5 | 0 | 605 | 696 | 1 | 92 | 1.20e-57 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07420.t1 | AT5G41020 | 55.124 | 283 | 126 | 1 | 411 | 693 | 302 | 583 | 1.44e-112 | 352 |
Find 134 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAAATTCCAGCTCTTC+AGG | 0.282279 | 1.2:+63868495 | None:intergenic |
| AACAAATGATCCACCATATT+GGG | 0.286872 | 1.2:-63868011 | MS.gene07420:CDS |
| GAAGATCAAAGCAGCTGTTT+TGG | 0.293853 | 1.2:-63868700 | MS.gene07420:CDS |
| ACATTGCTTTCGGACATATA+TGG | 0.300898 | 1.2:+63869902 | None:intergenic |
| CATTGAGCAGGTGGAAGTTC+TGG | 0.301208 | 1.2:-63867968 | MS.gene07420:CDS |
| GTCACTATACTCCTTAAGTT+TGG | 0.317240 | 1.2:+63869112 | None:intergenic |
| TTGATCTTCTCATCTTCTTC+GGG | 0.322099 | 1.2:+63868714 | None:intergenic |
| TTTGATCTTCTCATCTTCTT+CGG | 0.324153 | 1.2:+63868713 | None:intergenic |
| GAACAAATGATCCACCATAT+TGG | 0.329038 | 1.2:-63868012 | MS.gene07420:CDS |
| GATAAACGCTTTATATGCTT+TGG | 0.342448 | 1.2:-63868112 | MS.gene07420:CDS |
| TATATAGATTCTCATGGTTT+GGG | 0.357329 | 1.2:-63868675 | MS.gene07420:CDS |
| GTATATAGATTCTCATGGTT+TGG | 0.365976 | 1.2:-63868676 | MS.gene07420:CDS |
| TTATGTGTGCCTTCTTCACT+TGG | 0.367399 | 1.2:+63869422 | None:intergenic |
| TCATCATCTTCACATTCATT+TGG | 0.373205 | 1.2:+63869188 | None:intergenic |
| GGAGGCAATTGGTCACAAAT+TGG | 0.375244 | 1.2:-63868235 | MS.gene07420:CDS |
| TCTCTATCTTTCAACAGGTT+AGG | 0.380269 | 1.2:+63867931 | None:intergenic |
| ACTCCTAACTCTGCACATAA+TGG | 0.384709 | 1.2:-63868825 | MS.gene07420:CDS |
| GTTCCATTATGTGCAGAGTT+AGG | 0.391649 | 1.2:+63868822 | None:intergenic |
| GAGGGCAGTAGCCGACGCTT+TGG | 0.393084 | 1.2:-63868442 | MS.gene07420:CDS |
| TGGCTGCATGCTCCCCAATA+TGG | 0.395764 | 1.2:+63867998 | None:intergenic |
| CAGATCAGCTACATTGCTTT+CGG | 0.400572 | 1.2:+63869892 | None:intergenic |
| CTCTATCTTTCAACAGGTTA+GGG | 0.404823 | 1.2:+63867932 | None:intergenic |
| CATTGGTTGCTAGTGGTGAT+TGG | 0.407410 | 1.2:-63868158 | MS.gene07420:CDS |
| GGGAGACGAAGGTCTTGATA+TGG | 0.410993 | 1.2:-63868655 | MS.gene07420:CDS |
| AGGCCTCTCTATCTTTCAAC+AGG | 0.417278 | 1.2:+63867926 | None:intergenic |
| AGAAGCAATGAAGGTGATAA+TGG | 0.417384 | 1.2:-63869665 | MS.gene07420:CDS |
| TTCCAACAGCCTCTAACCTC+GGG | 0.421209 | 1.2:+63868612 | None:intergenic |
| GTTTCATTATGTGCACAGTT+AGG | 0.421260 | 1.2:+63868846 | None:intergenic |
| TAGCCCTCTCGAGCAGATCT+AGG | 0.424550 | 1.2:+63868310 | None:intergenic |
| AAAGGGAGGGGAGGTGTAAG+TGG | 0.424706 | 1.2:-63868521 | MS.gene07420:CDS |
| GTTGCGAGATAATATTTGTT+GGG | 0.434220 | 1.2:-63868256 | MS.gene07420:CDS |
| AAATTACACCCCGAGGTTAG+AGG | 0.442409 | 1.2:-63868621 | MS.gene07420:CDS |
| GTTTCATTACGTGCACAGTT+AGG | 0.446203 | 1.2:+63868978 | None:intergenic |
| AGGGCAGTAGCCGACGCTTT+GGG | 0.446431 | 1.2:-63868441 | MS.gene07420:CDS |
| GCTGCATGGAGGAGGTAGAC+TGG | 0.446516 | 1.2:-63868083 | MS.gene07420:CDS |
| CTAAACGCAAACAAGTAACT+TGG | 0.447239 | 1.2:-63868797 | MS.gene07420:CDS |
| TGCTCATGCTTTGTTAGAAA+GGG | 0.448940 | 1.2:-63868538 | MS.gene07420:CDS |
| GTGCTCATGCTTTGTTAGAA+AGG | 0.460254 | 1.2:-63868539 | MS.gene07420:CDS |
| AATATTTGTTGGGAGGCAAT+TGG | 0.463198 | 1.2:-63868246 | MS.gene07420:CDS |
| TTTCCAACAGCCTCTAACCT+CGG | 0.465967 | 1.2:+63868611 | None:intergenic |
| ACACTGTAATGAGGCCTCTC+AGG | 0.470045 | 1.2:+63868570 | None:intergenic |
| GTCACTGAAGTTAATGATGA+AGG | 0.477306 | 1.2:-63869050 | MS.gene07420:CDS |
| TGCTTTGGATGCTTGCTGCA+TGG | 0.479442 | 1.2:-63868097 | MS.gene07420:CDS |
| TAGAAGCAATGGAGGTGAAG+AGG | 0.481860 | 1.2:-63869291 | MS.gene07420:CDS |
| ACGGCTTATTGCGTGGGAAA+AGG | 0.484774 | 1.2:-63868743 | MS.gene07420:CDS |
| AAGAAGCAGAAATTAATTGA+AGG | 0.487991 | 1.2:-63869341 | MS.gene07420:CDS |
| TGTTGCGAGATAATATTTGT+TGG | 0.489321 | 1.2:-63868257 | MS.gene07420:CDS |
| GTCAGTGAAGTTAATGATCA+AGG | 0.490585 | 1.2:-63868918 | MS.gene07420:CDS |
| GGATGCTTGCTGCATGGAGG+AGG | 0.492182 | 1.2:-63868091 | MS.gene07420:CDS |
| AAGAAGAAACCAAGTGAAGA+AGG | 0.493411 | 1.2:-63869431 | MS.gene07420:CDS |
| AAGTGAAGAAAGTAAACATA+AGG | 0.498172 | 1.2:-63869228 | MS.gene07420:CDS |
| TGAAGGTGATAATGGCGAGC+AGG | 0.499793 | 1.2:-63869657 | MS.gene07420:CDS |
| GAGTGAGAAAAGCAAACATA+AGG | 0.503511 | 1.2:-63869606 | MS.gene07420:CDS |
| TCAGCATCACCTTCATTGCC+AGG | 0.508437 | 1.2:+63868954 | None:intergenic |
| ATAGGTCTGGTGATGTATGC+AGG | 0.510035 | 1.2:-63868044 | MS.gene07420:CDS |
| TGTAATGACTTTAGAAGCAA+TGG | 0.511180 | 1.2:-63869302 | MS.gene07420:CDS |
| AACAACTTTAGAAGCAATGA+AGG | 0.512264 | 1.2:-63869674 | MS.gene07420:CDS |
| TAAGTGGACACCTGAAGAGC+TGG | 0.512398 | 1.2:-63868505 | MS.gene07420:CDS |
| AATTGAGGAAGCCAAACTTA+AGG | 0.514474 | 1.2:-63869123 | MS.gene07420:CDS |
| AGTGACATTATAAGCAATGA+AGG | 0.517478 | 1.2:-63869095 | MS.gene07420:CDS |
| TTTGGGTAAAAGTCGAGATC+AGG | 0.519802 | 1.2:-63868424 | MS.gene07420:CDS |
| GAAGAAGAAGAAACTAATTG+AGG | 0.520193 | 1.2:-63869138 | MS.gene07420:CDS |
| AGCCAAGTCATTCATTGAGC+AGG | 0.521908 | 1.2:-63867980 | MS.gene07420:CDS |
| AATCTACTTGAGCATAGGTC+TGG | 0.523977 | 1.2:-63868057 | MS.gene07420:CDS |
| CTGCATGGAGGAGGTAGACT+GGG | 0.526890 | 1.2:-63868082 | MS.gene07420:CDS |
| AAAAGCAATAAAAGTGAAGA+TGG | 0.528970 | 1.2:-63869860 | MS.gene07420:CDS |
| CGAGCAATTAACATCAGCAT+TGG | 0.533412 | 1.2:-63868175 | MS.gene07420:CDS |
| AAGAAGCGGAAGCTAGTTGA+AGG | 0.534153 | 1.2:-63869716 | MS.gene07420:CDS |
| TTGGAGTATATAGATTCTCA+TGG | 0.535104 | 1.2:-63868681 | MS.gene07420:CDS |
| AAGTGAAGAAGGCACACATA+AGG | 0.535379 | 1.2:-63869420 | MS.gene07420:CDS |
| ACCCCGAGGTTAGAGGCTGT+TGG | 0.535419 | 1.2:-63868614 | MS.gene07420:CDS |
| AAAAGTGAAGATGGCGAGCA+AGG | 0.538269 | 1.2:-63869851 | MS.gene07420:CDS |
| CATATATGGATCACCTCCAT+TGG | 0.545409 | 1.2:+63869916 | None:intergenic |
| CATATAAAGCGTTTATCAAG+CGG | 0.546556 | 1.2:+63868118 | None:intergenic |
| AATCACAGGTTTGTTGTCAA+AGG | 0.550299 | 1.2:+63867906 | None:intergenic |
| ACGAGCAACATGGATCTAGT+TGG | 0.551620 | 1.2:-63868464 | MS.gene07420:CDS |
| AACTTGGGCTGATGAGGTGG+AGG | 0.553676 | 1.2:-63868781 | MS.gene07420:CDS |
| GTTTATCAAGCGGAAGTCAT+CGG | 0.557461 | 1.2:+63868128 | None:intergenic |
| ACAAGTAACTTGGGCTGATG+AGG | 0.559174 | 1.2:-63868787 | MS.gene07420:CDS |
| TGTTGTGACGGCTTATTGCG+TGG | 0.561335 | 1.2:-63868750 | MS.gene07420:CDS |
| AATGAAACTCCTGGCAATGA+AGG | 0.566619 | 1.2:-63868963 | MS.gene07420:CDS |
| TGTGCACGTAATGAAACTCC+TGG | 0.570515 | 1.2:-63868972 | MS.gene07420:CDS |
| CGGTTATACACACTGTAATG+AGG | 0.572231 | 1.2:+63868561 | None:intergenic |
| AGAAGCAATGGAGGTGAAGA+GGG | 0.572295 | 1.2:-63869290 | MS.gene07420:CDS |
| CATGCTTTGTTAGAAAGGGA+GGG | 0.573971 | 1.2:-63868534 | MS.gene07420:CDS |
| AGTAACTTGGGCTGATGAGG+TGG | 0.573985 | 1.2:-63868784 | MS.gene07420:CDS |
| TCATGCTTTGTTAGAAAGGG+AGG | 0.576855 | 1.2:-63868535 | MS.gene07420:CDS |
| TAGAAACCTCAACAAATCAC+AGG | 0.579568 | 1.2:+63867892 | None:intergenic |
| GAAGGTGATAATGGCGAGCA+GGG | 0.580967 | 1.2:-63869656 | MS.gene07420:CDS |
| ATGCTTTGTTAGAAAGGGAG+GGG | 0.581640 | 1.2:-63868533 | MS.gene07420:CDS |
| CACCTGCTCAATGAATGACT+TGG | 0.584077 | 1.2:+63867978 | None:intergenic |
| AACAAACCTGTGATTTGTTG+AGG | 0.586181 | 1.2:-63867898 | None:intergenic |
| AGCAACATGGATCTAGTTGG+AGG | 0.586815 | 1.2:-63868461 | MS.gene07420:CDS |
| GCGAGATAATATTTGTTGGG+AGG | 0.587211 | 1.2:-63868253 | MS.gene07420:CDS |
| GAGGAGAAGTTATGTTGTGA+CGG | 0.589001 | 1.2:-63868762 | MS.gene07420:CDS |
| ACATCAGCATTGGTTGCTAG+TGG | 0.590714 | 1.2:-63868165 | MS.gene07420:CDS |
| AGAAGCAATGATGATGAAGA+TGG | 0.598793 | 1.2:-63869479 | MS.gene07420:CDS |
| GACGACGAGGGTGAAACCAA+TGG | 0.599409 | 1.2:-63869932 | MS.gene07420:CDS |
| CTGCATGCTCCCCAATATGG+TGG | 0.600862 | 1.2:+63868001 | None:intergenic |
| TAAACGCAAACAAGTAACTT+GGG | 0.603412 | 1.2:-63868796 | MS.gene07420:CDS |
| TGAAGGAAACACACTTGAGG+AGG | 0.607482 | 1.2:-63869699 | MS.gene07420:CDS |
| AAACCTAGATCTGCTCGAGA+GGG | 0.608007 | 1.2:-63868313 | MS.gene07420:CDS |
| TAAACCTAGATCTGCTCGAG+AGG | 0.609475 | 1.2:-63868314 | MS.gene07420:CDS |
| TTGATCATTAACTTCACTGA+CGG | 0.613157 | 1.2:+63868920 | None:intergenic |
| AATTGAAGGAAGCACACTGA+AGG | 0.616212 | 1.2:-63869516 | MS.gene07420:CDS |
| GGGACAATCTACTTGAGCAT+AGG | 0.618965 | 1.2:-63868062 | MS.gene07420:CDS |
| TAACCTGTTGAAAGATAGAG+AGG | 0.620502 | 1.2:-63867929 | MS.gene07420:CDS |
| ACAAATGATCCACCATATTG+GGG | 0.622830 | 1.2:-63868010 | MS.gene07420:CDS |
| TCTCATGGTTTGGGAGACGA+AGG | 0.623440 | 1.2:-63868666 | MS.gene07420:CDS |
| CAAGTCATTCATTGAGCAGG+TGG | 0.627450 | 1.2:-63867977 | MS.gene07420:CDS |
| GAAAAGACCTACGAGCAACA+TGG | 0.630731 | 1.2:-63868474 | MS.gene07420:CDS |
| TTTCTAACAAAGCATGAGCA+CGG | 0.633278 | 1.2:+63868541 | None:intergenic |
| GTGATGTATGCAGGAAACGA+TGG | 0.636494 | 1.2:-63868035 | MS.gene07420:CDS |
| GAGATCAGGTAAAAGATGCA+TGG | 0.640257 | 1.2:-63868410 | MS.gene07420:CDS |
| GTTGTGACGGCTTATTGCGT+GGG | 0.642851 | 1.2:-63868749 | MS.gene07420:CDS |
| GCAACATGGATCTAGTTGGA+GGG | 0.643237 | 1.2:-63868460 | MS.gene07420:CDS |
| TTTGGATGCTTGCTGCATGG+AGG | 0.643384 | 1.2:-63868094 | MS.gene07420:CDS |
| AATGAATGTGAAGATGATGA+TGG | 0.645642 | 1.2:-63869185 | MS.gene07420:CDS |
| ACTAGATCCATGTTGCTCGT+AGG | 0.645688 | 1.2:+63868467 | None:intergenic |
| TGATGTATGCAGGAAACGAT+GGG | 0.648956 | 1.2:-63868034 | MS.gene07420:CDS |
| AATGACTTTAGAAGCAATGG+AGG | 0.658645 | 1.2:-63869299 | MS.gene07420:CDS |
| CTTTGTTAGAAAGGGAGGGG+AGG | 0.659450 | 1.2:-63868530 | MS.gene07420:CDS |
| GAAGGAAACACACTTGAGGA+GGG | 0.660891 | 1.2:-63869698 | MS.gene07420:CDS |
| AAAAGGACATTGGTCCCAAG+AGG | 0.666914 | 1.2:-63868361 | MS.gene07420:CDS |
| AAATGTCAAATTACACCCCG+AGG | 0.668903 | 1.2:-63868628 | MS.gene07420:CDS |
| CAAAAGAACTGAAGACGACG+AGG | 0.676138 | 1.2:-63869945 | MS.gene07420:CDS |
| AAATGTGAAGCTGACAACCA+AGG | 0.682713 | 1.2:-63869560 | MS.gene07420:CDS |
| TGTGAAGATGATGATGGCCA+AGG | 0.683186 | 1.2:-63869179 | MS.gene07420:CDS |
| TCCAACAGCCTCTAACCTCG+GGG | 0.692890 | 1.2:+63868613 | None:intergenic |
| AATGATTGTGAAGATGACCA+AGG | 0.698674 | 1.2:-63869377 | MS.gene07420:CDS |
| AGTTGAAGGAAACACACTTG+AGG | 0.699110 | 1.2:-63869702 | MS.gene07420:CDS |
| AAAAGAACTGAAGACGACGA+GGG | 0.720222 | 1.2:-63869944 | MS.gene07420:CDS |
| GAATGTGAAGATGATGACCA+CGG | 0.736913 | 1.2:-63869752 | MS.gene07420:CDS |
| GACGAGGGTGAAACCAATGG+AGG | 0.742823 | 1.2:-63869929 | MS.gene07420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACCAAAACAAAAAA+AGG | - | chr1.2:63869490-63869509 | MS.gene07420:CDS | 15.0% |
| !!! | TTGTTTTGGTATATTTTAAT+CGG | + | chr1.2:63869486-63869505 | None:intergenic | 15.0% |
| ! | AAAAGCAATAAAAGTGAAGA+TGG | - | chr1.2:63868008-63868027 | MS.gene07420:CDS | 25.0% |
| ! | AAGAAGCAGAAATTAATTGA+AGG | - | chr1.2:63868527-63868546 | MS.gene07420:CDS | 25.0% |
| ! | AAGTGAAGAAAGTAAACATA+AGG | - | chr1.2:63868640-63868659 | MS.gene07420:CDS | 25.0% |
| ! | ATGAAAAAGAAGCTAATTGA+AGG | - | chr1.2:63868338-63868357 | MS.gene07420:CDS | 25.0% |
| ! | CCTTATAAAAAATCACAACA+TGG | - | chr1.2:63869586-63869605 | MS.gene07420:CDS | 25.0% |
| ! | TATATAGATTCTCATGGTTT+GGG | - | chr1.2:63869193-63869212 | MS.gene07420:CDS | 25.0% |
| !!! | ATCTTCACTTTTATTGCTTT+TGG | + | chr1.2:63868009-63868028 | None:intergenic | 25.0% |
| !!! | CCATGTTGTGATTTTTTATA+AGG | + | chr1.2:63869589-63869608 | None:intergenic | 25.0% |
| AACAAATGATCCACCATATT+GGG | - | chr1.2:63869857-63869876 | MS.gene07420:CDS | 30.0% | |
| AATGAATGTGAAGATGATGA+TGG | - | chr1.2:63868113-63868132 | MS.gene07420:CDS | 30.0% | |
| AGTGACATTATAAGCAATGA+AGG | - | chr1.2:63868773-63868792 | MS.gene07420:CDS | 30.0% | |
| CCAAAACAAAAAAAGGACAT+TGG | - | chr1.2:63869497-63869516 | MS.gene07420:CDS | 30.0% | |
| GAAAGAAGATGAAAAAGAAG+CGG | - | chr1.2:63868138-63868157 | MS.gene07420:CDS | 30.0% | |
| GAAGAAGAAGAAACTAATTG+AGG | - | chr1.2:63868730-63868749 | MS.gene07420:CDS | 30.0% | |
| GATAAACGCTTTATATGCTT+TGG | - | chr1.2:63869756-63869775 | MS.gene07420:CDS | 30.0% | |
| GGGAAAGAAGAAAAAGAAAA+AGG | - | chr1.2:63868232-63868251 | MS.gene07420:CDS | 30.0% | |
| GTATATAGATTCTCATGGTT+TGG | - | chr1.2:63869192-63869211 | MS.gene07420:CDS | 30.0% | |
| GTTGCGAGATAATATTTGTT+GGG | - | chr1.2:63869612-63869631 | MS.gene07420:CDS | 30.0% | |
| TAAACGCAAACAAGTAACTT+GGG | - | chr1.2:63869072-63869091 | MS.gene07420:CDS | 30.0% | |
| TCATCATCTTCACATTCATT+TGG | + | chr1.2:63868113-63868132 | None:intergenic | 30.0% | |
| TGTTGCGAGATAATATTTGT+TGG | - | chr1.2:63869611-63869630 | MS.gene07420:CDS | 30.0% | |
| TTGATCATTAACTTCACTGA+CGG | + | chr1.2:63868951-63868970 | None:intergenic | 30.0% | |
| TTGGAGTATATAGATTCTCA+TGG | - | chr1.2:63869187-63869206 | MS.gene07420:CDS | 30.0% | |
| TTTGATCTTCTCATCTTCTT+CGG | + | chr1.2:63869158-63869177 | None:intergenic | 30.0% | |
| ! | AACAACTTTAGAAGCAATGA+AGG | - | chr1.2:63868194-63868213 | MS.gene07420:CDS | 30.0% |
| ! | CATATAAAGCGTTTATCAAG+CGG | + | chr1.2:63869753-63869772 | None:intergenic | 30.0% |
| ! | TCTTCTTCATTTTCTTTCCT+TGG | + | chr1.2:63868709-63868728 | None:intergenic | 30.0% |
| ! | TGTAATGACTTTAGAAGCAA+TGG | - | chr1.2:63868566-63868585 | MS.gene07420:CDS | 30.0% |
| !! | ACAAATTTTGATACTCCTCT+TGG | + | chr1.2:63869525-63869544 | None:intergenic | 30.0% |
| !! | CAAATTTTGATACTCCTCTT+GGG | + | chr1.2:63869524-63869543 | None:intergenic | 30.0% |
| !! | CTTTTATTGCTTTTGGTCAA+AGG | + | chr1.2:63868002-63868021 | None:intergenic | 30.0% |
| !! | TCTTTTTCATCTTCTTTCCT+TGG | + | chr1.2:63868328-63868347 | None:intergenic | 30.0% |
| !! | TCTTTTTCGTCTTTTTTCCT+TGG | + | chr1.2:63868511-63868530 | None:intergenic | 30.0% |
| !!! | CCAATGTCCTTTTTTTGTTT+TGG | + | chr1.2:63869500-63869519 | None:intergenic | 30.0% |
| !!! | GTTCTTTTGTTTTTCTTGCT+CGG | + | chr1.2:63867912-63867931 | None:intergenic | 30.0% |
| AAGAAGAAACCAAGTGAAGA+AGG | - | chr1.2:63868437-63868456 | MS.gene07420:CDS | 35.0% | |
| AATGATTGTGAAGATGACCA+AGG | - | chr1.2:63868491-63868510 | MS.gene07420:CDS | 35.0% | |
| AATTGAGGAAGCCAAACTTA+AGG | - | chr1.2:63868745-63868764 | MS.gene07420:CDS | 35.0% | |
| ACAAATGATCCACCATATTG+GGG | - | chr1.2:63869858-63869877 | MS.gene07420:CDS | 35.0% | |
| ACATTGCTTTCGGACATATA+TGG | + | chr1.2:63867969-63867988 | None:intergenic | 35.0% | |
| AGAAGCAATGAAGGTGATAA+TGG | - | chr1.2:63868203-63868222 | MS.gene07420:CDS | 35.0% | |
| CTAAACGCAAACAAGTAACT+TGG | - | chr1.2:63869071-63869090 | MS.gene07420:CDS | 35.0% | |
| CTCTATCTTTCAACAGGTTA+GGG | + | chr1.2:63869939-63869958 | None:intergenic | 35.0% | |
| GAACAAATGATCCACCATAT+TGG | - | chr1.2:63869856-63869875 | MS.gene07420:CDS | 35.0% | |
| GAGTGAGAAAAGCAAACATA+AGG | - | chr1.2:63868262-63868281 | MS.gene07420:CDS | 35.0% | |
| GTCACTATACTCCTTAAGTT+TGG | + | chr1.2:63868759-63868778 | None:intergenic | 35.0% | |
| GTCACTGAAGTTAATGATGA+AGG | - | chr1.2:63868818-63868837 | MS.gene07420:CDS | 35.0% | |
| GTCAGTGAAGTTAATGATCA+AGG | - | chr1.2:63868950-63868969 | MS.gene07420:CDS | 35.0% | |
| GTTTCATTATGTGCACAGTT+AGG | + | chr1.2:63869025-63869044 | None:intergenic | 35.0% | |
| TAACCTGTTGAAAGATAGAG+AGG | - | chr1.2:63869939-63869958 | MS.gene07420:CDS | 35.0% | |
| TCAATAAATTCCAGCTCTTC+AGG | + | chr1.2:63869376-63869395 | None:intergenic | 35.0% | |
| TCTCTATCTTTCAACAGGTT+AGG | + | chr1.2:63869940-63869959 | None:intergenic | 35.0% | |
| TTGATCTTCTCATCTTCTTC+GGG | + | chr1.2:63869157-63869176 | None:intergenic | 35.0% | |
| TTTCTAACAAAGCATGAGCA+CGG | + | chr1.2:63869330-63869349 | None:intergenic | 35.0% | |
| ! | AATATTTGTTGGGAGGCAAT+TGG | - | chr1.2:63869622-63869641 | MS.gene07420:CDS | 35.0% |
| ! | AATGACTTTAGAAGCAATGG+AGG | - | chr1.2:63868569-63868588 | MS.gene07420:CDS | 35.0% |
| ! | AGAAGCAATGATGATGAAGA+TGG | - | chr1.2:63868389-63868408 | MS.gene07420:CDS | 35.0% |
| ! | TGCTCATGCTTTGTTAGAAA+GGG | - | chr1.2:63869330-63869349 | MS.gene07420:CDS | 35.0% |
| !! | AATCACAGGTTTGTTGTCAA+AGG | + | chr1.2:63869965-63869984 | None:intergenic | 35.0% |
| !! | TCTTTTTCATCTTCTTTCCG+TGG | + | chr1.2:63868136-63868155 | None:intergenic | 35.0% |
| AAAAGAACTGAAGACGACGA+GGG | - | chr1.2:63867924-63867943 | MS.gene07420:CDS | 40.0% | |
| AAATGTCAAATTACACCCCG+AGG | - | chr1.2:63869240-63869259 | MS.gene07420:CDS | 40.0% | |
| AAATGTGAAGCTGACAACCA+AGG | - | chr1.2:63868308-63868327 | MS.gene07420:CDS | 40.0% | |
| AATCTACTTGAGCATAGGTC+TGG | - | chr1.2:63869811-63869830 | MS.gene07420:CDS | 40.0% | |
| AATGAAACTCCTGGCAATGA+AGG | - | chr1.2:63868905-63868924 | MS.gene07420:CDS | 40.0% | |
| ACTCCTAACTCTGCACATAA+TGG | - | chr1.2:63869043-63869062 | MS.gene07420:CDS | 40.0% | |
| AGTTGAAGGAAACACACTTG+AGG | - | chr1.2:63868166-63868185 | MS.gene07420:CDS | 40.0% | |
| CAGATCAGCTACATTGCTTT+CGG | + | chr1.2:63867979-63867998 | None:intergenic | 40.0% | |
| CATATATGGATCACCTCCAT+TGG | + | chr1.2:63867955-63867974 | None:intergenic | 40.0% | |
| CGAGCAATTAACATCAGCAT+TGG | - | chr1.2:63869693-63869712 | MS.gene07420:CDS | 40.0% | |
| CGGTTATACACACTGTAATG+AGG | + | chr1.2:63869310-63869329 | None:intergenic | 40.0% | |
| GAATGTGAAGATGATGACCA+CGG | - | chr1.2:63868116-63868135 | MS.gene07420:CDS | 40.0% | |
| GAGATCAGGTAAAAGATGCA+TGG | - | chr1.2:63869458-63869477 | MS.gene07420:CDS | 40.0% | |
| GAGGAGAAGTTATGTTGTGA+CGG | - | chr1.2:63869106-63869125 | MS.gene07420:CDS | 40.0% | |
| GTTCCATTATGTGCAGAGTT+AGG | + | chr1.2:63869049-63869068 | None:intergenic | 40.0% | |
| GTTTATCAAGCGGAAGTCAT+CGG | + | chr1.2:63869743-63869762 | None:intergenic | 40.0% | |
| GTTTCATTACGTGCACAGTT+AGG | + | chr1.2:63868893-63868912 | None:intergenic | 40.0% | |
| TGATGTATGCAGGAAACGAT+GGG | - | chr1.2:63869834-63869853 | MS.gene07420:CDS | 40.0% | |
| TTATGTGTGCCTTCTTCACT+TGG | + | chr1.2:63868449-63868468 | None:intergenic | 40.0% | |
| TTTGGGTAAAAGTCGAGATC+AGG | - | chr1.2:63869444-63869463 | MS.gene07420:CDS | 40.0% | |
| ! | AAGTGAAGAAGGCACACATA+AGG | - | chr1.2:63868448-63868467 | MS.gene07420:CDS | 40.0% |
| ! | AATTGAAGGAAGCACACTGA+AGG | - | chr1.2:63868352-63868371 | MS.gene07420:CDS | 40.0% |
| ! | ATGCTTTGTTAGAAAGGGAG+GGG | - | chr1.2:63869335-63869354 | MS.gene07420:CDS | 40.0% |
| ! | CATGCTTTGTTAGAAAGGGA+GGG | - | chr1.2:63869334-63869353 | MS.gene07420:CDS | 40.0% |
| ! | GAAGATCAAAGCAGCTGTTT+TGG | - | chr1.2:63869168-63869187 | MS.gene07420:CDS | 40.0% |
| ! | GCGAGATAATATTTGTTGGG+AGG | - | chr1.2:63869615-63869634 | MS.gene07420:CDS | 40.0% |
| ! | GTGCTCATGCTTTGTTAGAA+AGG | - | chr1.2:63869329-63869348 | MS.gene07420:CDS | 40.0% |
| ! | TCATGCTTTGTTAGAAAGGG+AGG | - | chr1.2:63869333-63869352 | MS.gene07420:CDS | 40.0% |
| AAAAGGACATTGGTCCCAAG+AGG | - | chr1.2:63869507-63869526 | MS.gene07420:CDS | 45.0% | |
| AAAAGTGAAGATGGCGAGCA+AGG | - | chr1.2:63868017-63868036 | MS.gene07420:CDS | 45.0% | |
| AAACCTAGATCTGCTCGAGA+GGG | - | chr1.2:63869555-63869574 | MS.gene07420:CDS | 45.0% | |
| AAATTACACCCCGAGGTTAG+AGG | - | chr1.2:63869247-63869266 | MS.gene07420:CDS | 45.0% | |
| AAGAAGCGGAAGCTAGTTGA+AGG | - | chr1.2:63868152-63868171 | MS.gene07420:CDS | 45.0% | |
| ACAAGTAACTTGGGCTGATG+AGG | - | chr1.2:63869081-63869100 | MS.gene07420:CDS | 45.0% | |
| ACGAGCAACATGGATCTAGT+TGG | - | chr1.2:63869404-63869423 | MS.gene07420:CDS | 45.0% | |
| ACTAGATCCATGTTGCTCGT+AGG | + | chr1.2:63869404-63869423 | None:intergenic | 45.0% | |
| AGAAGCAATGGAGGTGAAGA+GGG | - | chr1.2:63868578-63868597 | MS.gene07420:CDS | 45.0% | |
| AGCAACATGGATCTAGTTGG+AGG | - | chr1.2:63869407-63869426 | MS.gene07420:CDS | 45.0% | |
| AGCCAAGTCATTCATTGAGC+AGG | - | chr1.2:63869888-63869907 | MS.gene07420:CDS | 45.0% | |
| AGGCCTCTCTATCTTTCAAC+AGG | + | chr1.2:63869945-63869964 | None:intergenic | 45.0% | |
| CAAAAGAACTGAAGACGACG+AGG | - | chr1.2:63867923-63867942 | MS.gene07420:CDS | 45.0% | |
| CAAGTCATTCATTGAGCAGG+TGG | - | chr1.2:63869891-63869910 | MS.gene07420:CDS | 45.0% | |
| CACCTGCTCAATGAATGACT+TGG | + | chr1.2:63869893-63869912 | None:intergenic | 45.0% | |
| GAAAAGACCTACGAGCAACA+TGG | - | chr1.2:63869394-63869413 | MS.gene07420:CDS | 45.0% | |
| GAAGGAAACACACTTGAGGA+GGG | - | chr1.2:63868170-63868189 | MS.gene07420:CDS | 45.0% | |
| GCAACATGGATCTAGTTGGA+GGG | - | chr1.2:63869408-63869427 | MS.gene07420:CDS | 45.0% | |
| GGAGGCAATTGGTCACAAAT+TGG | - | chr1.2:63869633-63869652 | MS.gene07420:CDS | 45.0% | |
| GGGACAATCTACTTGAGCAT+AGG | - | chr1.2:63869806-63869825 | MS.gene07420:CDS | 45.0% | |
| GTGATGTATGCAGGAAACGA+TGG | - | chr1.2:63869833-63869852 | MS.gene07420:CDS | 45.0% | |
| TAAACCTAGATCTGCTCGAG+AGG | - | chr1.2:63869554-63869573 | MS.gene07420:CDS | 45.0% | |
| TAGAAGCAATGGAGGTGAAG+AGG | - | chr1.2:63868577-63868596 | MS.gene07420:CDS | 45.0% | |
| TGAAGGAAACACACTTGAGG+AGG | - | chr1.2:63868169-63868188 | MS.gene07420:CDS | 45.0% | |
| TGTGCACGTAATGAAACTCC+TGG | - | chr1.2:63868896-63868915 | MS.gene07420:CDS | 45.0% | |
| TTTCCAACAGCCTCTAACCT+CGG | + | chr1.2:63869260-63869279 | None:intergenic | 45.0% | |
| ! | ATAGGTCTGGTGATGTATGC+AGG | - | chr1.2:63869824-63869843 | MS.gene07420:CDS | 45.0% |
| ! | CATTGGTTGCTAGTGGTGAT+TGG | - | chr1.2:63869710-63869729 | MS.gene07420:CDS | 45.0% |
| ! | GTGCATTTTGCTGCAAGAAG+TGG | - | chr1.2:63869668-63869687 | MS.gene07420:CDS | 45.0% |
| ! | TCGACTTTTACCCAAAGCGT+CGG | + | chr1.2:63869440-63869459 | None:intergenic | 45.0% |
| ! | TCGCAAAAAGCATACCTGAG+AGG | - | chr1.2:63869284-63869303 | MS.gene07420:CDS | 45.0% |
| !! | ACATCAGCATTGGTTGCTAG+TGG | - | chr1.2:63869703-63869722 | MS.gene07420:CDS | 45.0% |
| !! | TGTGAAGATGATGATGGCCA+AGG | - | chr1.2:63868689-63868708 | MS.gene07420:CDS | 45.0% |
| ACACTGTAATGAGGCCTCTC+AGG | + | chr1.2:63869301-63869320 | None:intergenic | 50.0% | |
| ACGGCTTATTGCGTGGGAAA+AGG | - | chr1.2:63869125-63869144 | MS.gene07420:CDS | 50.0% | |
| AGTAACTTGGGCTGATGAGG+TGG | - | chr1.2:63869084-63869103 | MS.gene07420:CDS | 50.0% | |
| CATTGAGCAGGTGGAAGTTC+TGG | - | chr1.2:63869900-63869919 | MS.gene07420:CDS | 50.0% | |
| CTTTGTTAGAAAGGGAGGGG+AGG | - | chr1.2:63869338-63869357 | MS.gene07420:CDS | 50.0% | |
| GGGAGACGAAGGTCTTGATA+TGG | - | chr1.2:63869213-63869232 | MS.gene07420:CDS | 50.0% | |
| GTTGTGACGGCTTATTGCGT+GGG | - | chr1.2:63869119-63869138 | MS.gene07420:CDS | 50.0% | |
| TAAGTGGACACCTGAAGAGC+TGG | - | chr1.2:63869363-63869382 | MS.gene07420:CDS | 50.0% | |
| TCAGCATCACCTTCATTGCC+AGG | + | chr1.2:63868917-63868936 | None:intergenic | 50.0% | |
| TGTTGTGACGGCTTATTGCG+TGG | - | chr1.2:63869118-63869137 | MS.gene07420:CDS | 50.0% | |
| TTCCAACAGCCTCTAACCTC+GGG | + | chr1.2:63869259-63869278 | None:intergenic | 50.0% | |
| ! | TCTCATGGTTTGGGAGACGA+AGG | - | chr1.2:63869202-63869221 | MS.gene07420:CDS | 50.0% |
| ! | TGCTTTGGATGCTTGCTGCA+TGG | - | chr1.2:63869771-63869790 | MS.gene07420:CDS | 50.0% |
| ! | TTTGGATGCTTGCTGCATGG+AGG | - | chr1.2:63869774-63869793 | MS.gene07420:CDS | 50.0% |
| !! | GAAGGTGATAATGGCGAGCA+GGG | - | chr1.2:63868212-63868231 | MS.gene07420:CDS | 50.0% |
| !! | TGAAGGTGATAATGGCGAGC+AGG | - | chr1.2:63868211-63868230 | MS.gene07420:CDS | 50.0% |
| AACTTGGGCTGATGAGGTGG+AGG | - | chr1.2:63869087-63869106 | MS.gene07420:CDS | 55.0% | |
| CTGCATGCTCCCCAATATGG+TGG | + | chr1.2:63869870-63869889 | None:intergenic | 55.0% | |
| CTGCATGGAGGAGGTAGACT+GGG | - | chr1.2:63869786-63869805 | MS.gene07420:CDS | 55.0% | |
| GACGACGAGGGTGAAACCAA+TGG | - | chr1.2:63867936-63867955 | MS.gene07420:CDS | 55.0% | |
| GACGAGGGTGAAACCAATGG+AGG | - | chr1.2:63867939-63867958 | MS.gene07420:CDS | 55.0% | |
| TAGCCCTCTCGAGCAGATCT+AGG | + | chr1.2:63869561-63869580 | None:intergenic | 55.0% | |
| TCCAACAGCCTCTAACCTCG+GGG | + | chr1.2:63869258-63869277 | None:intergenic | 55.0% | |
| TGGCTGCATGCTCCCCAATA+TGG | + | chr1.2:63869873-63869892 | None:intergenic | 55.0% | |
| ! | AAAGGGAGGGGAGGTGTAAG+TGG | - | chr1.2:63869347-63869366 | MS.gene07420:CDS | 55.0% |
| ACCCCGAGGTTAGAGGCTGT+TGG | - | chr1.2:63869254-63869273 | MS.gene07420:CDS | 60.0% | |
| AGGGCAGTAGCCGACGCTTT+GGG | - | chr1.2:63869427-63869446 | MS.gene07420:CDS | 60.0% | |
| GCTGCATGGAGGAGGTAGAC+TGG | - | chr1.2:63869785-63869804 | MS.gene07420:CDS | 60.0% | |
| ! | GGATGCTTGCTGCATGGAGG+AGG | - | chr1.2:63869777-63869796 | MS.gene07420:CDS | 60.0% |
| GAGGGCAGTAGCCGACGCTT+TGG | - | chr1.2:63869426-63869445 | MS.gene07420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 63867900 | 63869990 | 63867900 | ID=MS.gene07420 |
| chr1.2 | mRNA | 63867900 | 63869990 | 63867900 | ID=MS.gene07420.t1;Parent=MS.gene07420 |
| chr1.2 | exon | 63867900 | 63869990 | 63867900 | ID=MS.gene07420.t1.exon1;Parent=MS.gene07420.t1 |
| chr1.2 | CDS | 63867900 | 63869990 | 63867900 | ID=cds.MS.gene07420.t1;Parent=MS.gene07420.t1 |
| Gene Sequence |
| Protein sequence |
