Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074317.t1 | XP_013451269.1 | 97.4 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 5.50E-123 | 450.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074317.t1 | Q9SWS1 | 69.2 | 224 | 69 | 0 | 1 | 224 | 1 | 224 | 3.0e-85 | 316.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074317.t1 | G7ZY50 | 97.4 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 4.0e-123 | 450.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene074317 | 0.800526 | 1.38E-48 | -1.69E-46 |
| MS.gene049807 | MS.gene074317 | 0.842977 | 1.86E-58 | -1.69E-46 |
| MS.gene050945 | MS.gene074317 | 0.829351 | 5.40E-55 | -1.69E-46 |
| MS.gene051234 | MS.gene074317 | 0.837604 | 4.71E-57 | -1.69E-46 |
| MS.gene051648 | MS.gene074317 | 0.831685 | 1.45E-55 | -1.69E-46 |
| MS.gene051699 | MS.gene074317 | 0.816934 | 4.28E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene074317 | 0.820397 | 7.01E-53 | -1.69E-46 |
| MS.gene052628 | MS.gene074317 | 0.826509 | 2.61E-54 | -1.69E-46 |
| MS.gene052630 | MS.gene074317 | 0.817076 | 3.98E-52 | -1.69E-46 |
| MS.gene052793 | MS.gene074317 | 0.845021 | 5.26E-59 | -1.69E-46 |
| MS.gene053272 | MS.gene074317 | -0.800928 | 1.15E-48 | -1.69E-46 |
| MS.gene054142 | MS.gene074317 | 0.839228 | 1.80E-57 | -1.69E-46 |
| MS.gene055339 | MS.gene074317 | 0.863239 | 2.87E-64 | -1.69E-46 |
| MS.gene055765 | MS.gene074317 | 0.812428 | 4.26E-51 | -1.69E-46 |
| MS.gene056082 | MS.gene074317 | 0.850156 | 2.04E-60 | -1.69E-46 |
| MS.gene057102 | MS.gene074317 | 0.834506 | 2.88E-56 | -1.69E-46 |
| MS.gene057684 | MS.gene074317 | -0.810117 | 1.35E-50 | -1.69E-46 |
| MS.gene058149 | MS.gene074317 | 0.803667 | 3.12E-49 | -1.69E-46 |
| MS.gene058210 | MS.gene074317 | 0.818101 | 2.34E-52 | -1.69E-46 |
| MS.gene058431 | MS.gene074317 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene074317 | 0.803096 | 4.10E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene074317 | 0.827119 | 1.87E-54 | -1.69E-46 |
| MS.gene059778 | MS.gene074317 | 0.836278 | 1.03E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene074317 | -0.820099 | 8.20E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene074317 | 0.830112 | 3.53E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074317.t1 | MTR_6g017105 | 97.414 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 6.74e-165 | 454 |
| MS.gene074317.t1 | MTR_1g100643 | 47.085 | 223 | 115 | 2 | 5 | 227 | 6 | 225 | 2.41e-64 | 199 |
| MS.gene074317.t1 | MTR_5g053250 | 46.226 | 212 | 109 | 3 | 16 | 223 | 18 | 228 | 1.90e-55 | 177 |
| MS.gene074317.t1 | MTR_5g053250 | 41.423 | 239 | 108 | 4 | 16 | 223 | 18 | 255 | 2.98e-50 | 165 |
| MS.gene074317.t1 | MTR_5g053250 | 49.112 | 169 | 85 | 1 | 55 | 223 | 1 | 168 | 6.85e-49 | 159 |
| MS.gene074317.t1 | MTR_1g100643 | 45.665 | 173 | 93 | 1 | 55 | 227 | 1 | 172 | 2.20e-48 | 157 |
| MS.gene074317.t1 | MTR_1g033360 | 37.313 | 201 | 121 | 1 | 20 | 220 | 21 | 216 | 2.94e-46 | 153 |
| MS.gene074317.t1 | MTR_1g033390 | 34.673 | 199 | 126 | 1 | 19 | 217 | 14 | 208 | 3.85e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074317.t1 | AT5G38630 | 69.196 | 224 | 69 | 0 | 1 | 224 | 1 | 224 | 2.25e-111 | 319 |
| MS.gene074317.t1 | AT4G25570 | 41.500 | 200 | 116 | 1 | 16 | 215 | 15 | 213 | 1.13e-54 | 175 |
| MS.gene074317.t1 | AT4G25570 | 41.709 | 199 | 115 | 1 | 17 | 215 | 57 | 254 | 3.97e-54 | 175 |
| MS.gene074317.t1 | AT1G26100 | 42.534 | 221 | 115 | 5 | 4 | 223 | 6 | 215 | 3.15e-47 | 156 |
| MS.gene074317.t1 | AT1G14730 | 34.466 | 206 | 128 | 2 | 19 | 223 | 25 | 224 | 1.88e-36 | 128 |
Find 50 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGGATTTGCAACATTT+TGG | 0.259463 | 6.2:-12755975 | MS.gene074317:CDS |
| TTCTGAGCTTAATTGGTCTC+TGG | 0.270642 | 6.2:-12756622 | MS.gene074317:CDS |
| GCTCTCATTCTGAGCTTAAT+TGG | 0.281510 | 6.2:-12756629 | MS.gene074317:CDS |
| ATTTCTACAGCCTGCATTCA+TGG | 0.301912 | 6.2:-12756562 | MS.gene074317:CDS |
| ATATTCCAATGAAGCACTTT+TGG | 0.310108 | 6.2:-12755803 | MS.gene074317:CDS |
| ATGCCATGGCATGTGTTCTT+TGG | 0.349931 | 6.2:-12755916 | MS.gene074317:CDS |
| GTTGACCAAAAGTGCTTCAT+TGG | 0.353751 | 6.2:+12755798 | None:intergenic |
| TTAGGTGGCTTTGTTATTCT+CGG | 0.365202 | 6.2:-12755751 | MS.gene074317:CDS |
| TACAGCCTGCATTCATGGTT+AGG | 0.404505 | 6.2:-12756557 | MS.gene074317:CDS |
| CTCTCACTGTTGCGAAGATC+GGG | 0.412864 | 6.2:+12758692 | None:intergenic |
| AATAAAGCTGATGATATAAG+AGG | 0.418425 | 6.2:-12755709 | MS.gene074317:CDS |
| CTACTATTTCTTGAGCCTCC+TGG | 0.421659 | 6.2:+12755949 | None:intergenic |
| AAAATACCTGAATGAAGAAT+AGG | 0.424840 | 6.2:+12756519 | None:intergenic |
| CATCCAGTGCTGATGGTGAT+TGG | 0.432858 | 6.2:-12757538 | MS.gene074317:CDS |
| TTCGCAACAGTGAGAGGTAT+TGG | 0.436891 | 6.2:-12758685 | MS.gene074317:CDS |
| ATATGACGTTGCCGGTTTGA+AGG | 0.453380 | 6.2:+12755830 | None:intergenic |
| ATTGGCCTTGTTCTGATCAA+TGG | 0.456315 | 6.2:-12757520 | MS.gene074317:CDS |
| CCTCTCACTGTTGCGAAGAT+CGG | 0.456843 | 6.2:+12758691 | None:intergenic |
| ATATCGCGATATGACGTTGC+CGG | 0.458503 | 6.2:+12755822 | None:intergenic |
| TCTGAGCTTAATTGGTCTCT+GGG | 0.459830 | 6.2:-12756621 | MS.gene074317:CDS |
| CTTGCGTACAGGACGGTATC+CGG | 0.466981 | 6.2:-12756698 | MS.gene074317:CDS |
| TAATTGGTCTCTGGGCTGCT+TGG | 0.489448 | 6.2:-12756613 | MS.gene074317:CDS |
| TCGCTACTCTTCTGTTAACA+TGG | 0.495998 | 6.2:-12758654 | MS.gene074317:CDS |
| GCTATAGCCACAACTGCTAC+TGG | 0.500884 | 6.2:-12755874 | MS.gene074317:CDS |
| CCTGAATGAAGAATAGGAAA+AGG | 0.505159 | 6.2:+12756525 | None:intergenic |
| AAGGCTACATTCCTTCAAAC+CGG | 0.515114 | 6.2:-12755841 | MS.gene074317:CDS |
| GTGCAGGGATGCTTGCGTAC+AGG | 0.523806 | 6.2:-12756709 | MS.gene074317:intron |
| AGGCCAATCACCATCAGCAC+TGG | 0.529993 | 6.2:+12757535 | None:intergenic |
| ACATGGGTTGTTCATTTCAG+AGG | 0.537822 | 6.2:-12758637 | MS.gene074317:CDS |
| TAAAAGACCAGTAGCAGTTG+TGG | 0.540299 | 6.2:+12755867 | None:intergenic |
| ATCGGGAATTTGACTACTGG+TGG | 0.544162 | 6.2:+12758709 | None:intergenic |
| CGCTACTCTTCTGTTAACAT+GGG | 0.547073 | 6.2:-12758653 | MS.gene074317:CDS |
| CAAGGCCTAACCATGAATGC+AGG | 0.550817 | 6.2:+12756552 | None:intergenic |
| TGGTATCTATATCTATGCAT+TGG | 0.564702 | 6.2:-12755896 | MS.gene074317:CDS |
| TCATCAGCTTTATTATAAGT+CGG | 0.565682 | 6.2:+12755718 | None:intergenic |
| GATATAAGAGGAAATGAGTG+AGG | 0.565852 | 6.2:-12755697 | None:intergenic |
| AAGATCGGGAATTTGACTAC+TGG | 0.568641 | 6.2:+12758706 | None:intergenic |
| CCGATCTTCGCAACAGTGAG+AGG | 0.584109 | 6.2:-12758691 | MS.gene074317:CDS |
| TGGGTTGTTCATTTCAGAGG+AGG | 0.588663 | 6.2:-12758634 | MS.gene074317:CDS |
| AATGAAGAATAGGAAAAGGC+AGG | 0.590163 | 6.2:+12756529 | None:intergenic |
| AGAATAGGAAAAGGCAGGCA+AGG | 0.599473 | 6.2:+12756534 | None:intergenic |
| TGGAAATTTCACAATGACAA+GGG | 0.615433 | 6.2:-12756593 | MS.gene074317:CDS |
| GTAGAGTTGCGCTAATGCCA+TGG | 0.616539 | 6.2:-12755930 | MS.gene074317:CDS |
| GTAGGTTCATCCAGTGCTGA+TGG | 0.623339 | 6.2:-12757545 | MS.gene074317:intron |
| CTTCACCATTGATCAGAACA+AGG | 0.635114 | 6.2:+12757515 | None:intergenic |
| TTGGAAATTTCACAATGACA+AGG | 0.644036 | 6.2:-12756594 | MS.gene074317:CDS |
| ATACCAAAGAACACATGCCA+TGG | 0.644899 | 6.2:+12755913 | None:intergenic |
| CTTGTTCTGATCAATGGTGA+AGG | 0.651060 | 6.2:-12757514 | MS.gene074317:intron |
| ATATAAGAGGAAATGAGTGA+GGG | 0.651249 | 6.2:-12755696 | None:intergenic |
| AGGGATGCTTGCGTACAGGA+CGG | 0.686714 | 6.2:-12756705 | MS.gene074317:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTAATGTTTTTAATTTTT+TGG | - | chr6.2:12755959-12755978 | MS.gene074317:CDS | 10.0% |
| !!! | TTTTTTGTTTAAATTTAGTT+TGG | - | chr6.2:12756458-12756477 | MS.gene074317:intron | 10.0% |
| !! | AAAGAGTGAAAAAAAAAAAT+TGG | - | chr6.2:12757509-12757528 | MS.gene074317:intron | 15.0% |
| !!! | AAAAATAGAAAGTACTAATT+TGG | + | chr6.2:12758291-12758310 | None:intergenic | 15.0% |
| !!! | ATTAGTACTTTCTATTTTTA+AGG | - | chr6.2:12758292-12758311 | MS.gene074317:intron | 15.0% |
| !!! | CATTTTTCAGATAATTTATT+CGG | - | chr6.2:12758055-12758074 | MS.gene074317:intron | 15.0% |
| !!! | TGTTATTATTCTTTGTTTTA+GGG | - | chr6.2:12755907-12755926 | MS.gene074317:CDS | 15.0% |
| !!! | TTGTTATTATTCTTTGTTTT+AGG | - | chr6.2:12755906-12755925 | MS.gene074317:CDS | 15.0% |
| !!! | TTTTTTTTTTTCACTCTTTT+CGG | + | chr6.2:12757508-12757527 | None:intergenic | 15.0% |
| !! | ACAAATAAATACTTGAAAAG+AGG | + | chr6.2:12757484-12757503 | None:intergenic | 20.0% |
| !! | GAAATATAGCGAAAATATAT+GGG | + | chr6.2:12757199-12757218 | None:intergenic | 20.0% |
| !! | TGAAATATAGCGAAAATATA+TGG | + | chr6.2:12757200-12757219 | None:intergenic | 20.0% |
| !! | TTTATTAATCTTTGTAGCAT+TGG | - | chr6.2:12756118-12756137 | MS.gene074317:intron | 20.0% |
| !!! | ATATTTTCGCTATATTTCAT+TGG | - | chr6.2:12757201-12757220 | MS.gene074317:intron | 20.0% |
| !!! | GAAACAAATGTTTTAAAAAC+TGG | + | chr6.2:12758243-12758262 | None:intergenic | 20.0% |
| !!! | GAGTGTAAATTTTGATTTTT+AGG | - | chr6.2:12756360-12756379 | MS.gene074317:intron | 20.0% |
| !!! | TGTTAATTTTGTTTCAGTTT+TGG | - | chr6.2:12756032-12756051 | MS.gene074317:intron | 20.0% |
| !!! | TGTTTTTAATTTTTTGGTGT+TGG | - | chr6.2:12755965-12755984 | MS.gene074317:CDS | 20.0% |
| !!! | TTTAACTCTTTTTTTCATCT+GGG | - | chr6.2:12755863-12755882 | MS.gene074317:CDS | 20.0% |
| !!! | TTTTAACTCTTTTTTTCATC+TGG | - | chr6.2:12755862-12755881 | MS.gene074317:CDS | 20.0% |
| ! | AAAATACCTGAATGAAGAAT+AGG | + | chr6.2:12757901-12757920 | None:intergenic | 25.0% |
| ! | AATAAAGCTGATGATATAAG+AGG | - | chr6.2:12758708-12758727 | MS.gene074317:CDS | 25.0% |
| ! | AATAACAGTGATCAACAAAT+CGG | - | chr6.2:12757024-12757043 | MS.gene074317:intron | 25.0% |
| ! | AATATATGGGAATTGACTAT+AGG | + | chr6.2:12757186-12757205 | None:intergenic | 25.0% |
| ! | ACCAATTAAGAGATAGTAAA+AGG | + | chr6.2:12757629-12757648 | None:intergenic | 25.0% |
| ! | ATACTATGAGAAATCTGAAT+AGG | - | chr6.2:12757118-12757137 | MS.gene074317:intron | 25.0% |
| ! | CATATTGAGACTAGAAATTA+TGG | + | chr6.2:12756410-12756429 | None:intergenic | 25.0% |
| ! | TGCTAAACTTATCGTAATTA+AGG | - | chr6.2:12756493-12756512 | MS.gene074317:intron | 25.0% |
| ! | TTCAGATTTCTCATAGTATT+TGG | + | chr6.2:12757117-12757136 | None:intergenic | 25.0% |
| ! | TTGAATATGTGAGAATTTGA+AGG | - | chr6.2:12755990-12756009 | MS.gene074317:intron | 25.0% |
| ! | TTGAATGTAAACACATGTAT+CGG | + | chr6.2:12756179-12756198 | None:intergenic | 25.0% |
| ! | TTGCATTACATACAGATAAA+GGG | + | chr6.2:12757094-12757113 | None:intergenic | 25.0% |
| !! | ACAACAATTTTCACTCTTTT+CGG | + | chr6.2:12757587-12757606 | None:intergenic | 25.0% |
| !! | TCCTTTTACTATCTCTTAAT+TGG | - | chr6.2:12757625-12757644 | MS.gene074317:intron | 25.0% |
| !!! | ACAAAACTAAAGAAAGTATC+TGG | - | chr6.2:12757391-12757410 | MS.gene074317:intron | 25.0% |
| !!! | ACTTTCTATTTTTAAGGATC+TGG | - | chr6.2:12758298-12758317 | MS.gene074317:intron | 25.0% |
| !!! | ATTCTTTGTTTTAGGGTAAT+GGG | - | chr6.2:12755914-12755933 | MS.gene074317:CDS | 25.0% |
| !!! | ATTTTAATTGTTGCTTTAGG+TGG | - | chr6.2:12758651-12758670 | MS.gene074317:CDS | 25.0% |
| !!! | CAATGTTTTAAAAACTGGAT+TGG | - | chr6.2:12758110-12758129 | MS.gene074317:intron | 25.0% |
| !!! | GTTTTTTTTATCAATGTGCA+GGG | - | chr6.2:12757693-12757712 | MS.gene074317:intron | 25.0% |
| !!! | TATTCTTTGTTTTAGGGTAA+TGG | - | chr6.2:12755913-12755932 | MS.gene074317:CDS | 25.0% |
| !!! | TCATCAGCTTTATTATAAGT+CGG | + | chr6.2:12758702-12758721 | None:intergenic | 25.0% |
| !!! | TCGATCAATGTTTTAAAAAC+TGG | - | chr6.2:12758105-12758124 | MS.gene074317:intron | 25.0% |
| !!! | TGTTTTTTTTATCAATGTGC+AGG | - | chr6.2:12757692-12757711 | MS.gene074317:intron | 25.0% |
| !!! | TTTTGTTTAGCAATAAGAAG+TGG | - | chr6.2:12756623-12756642 | MS.gene074317:CDS | 25.0% |
| !!! | TTTTTTCTCAAAGACTAGTT+TGG | - | chr6.2:12758333-12758352 | MS.gene074317:intron | 25.0% |
| ACTTTCAACTCTTGCATTTA+AGG | + | chr6.2:12757274-12757293 | None:intergenic | 30.0% | |
| ATAAAGACGAGACTCATAAA+TGG | + | chr6.2:12757364-12757383 | None:intergenic | 30.0% | |
| ATTTGAAGGCTTAGGATTAA+AGG | - | chr6.2:12756004-12756023 | MS.gene074317:intron | 30.0% | |
| CACATGTTGTAGTATGTATT+TGG | - | chr6.2:12756333-12756352 | MS.gene074317:intron | 30.0% | |
| CACCATAAAAAGTTTCAAAC+AGG | + | chr6.2:12756975-12756994 | None:intergenic | 30.0% | |
| CCATAAAAAAAATCTCTACG+AGG | + | chr6.2:12756752-12756771 | None:intergenic | 30.0% | |
| CTGAAAAATGACTAATGTTC+AGG | + | chr6.2:12758045-12758064 | None:intergenic | 30.0% | |
| GAGACTAGAAATTATGGTAA+AGG | + | chr6.2:12756404-12756423 | None:intergenic | 30.0% | |
| GATTTGAATTTCATCTCTTG+AGG | - | chr6.2:12756293-12756312 | MS.gene074317:intron | 30.0% | |
| GTTGCATTACATACAGATAA+AGG | + | chr6.2:12757095-12757114 | None:intergenic | 30.0% | |
| TAAACTCTTGTATTCCATGT+AGG | - | chr6.2:12756854-12756873 | MS.gene074317:intron | 30.0% | |
| TATGGTGATATTGCTATGAA+GGG | - | chr6.2:12756988-12757007 | MS.gene074317:intron | 30.0% | |
| TGGAAATTTCACAATGACAA+GGG | - | chr6.2:12757824-12757843 | MS.gene074317:intron | 30.0% | |
| TGGTATCTATATCTATGCAT+TGG | - | chr6.2:12758521-12758540 | MS.gene074317:intron | 30.0% | |
| TGTTCAGGCATTTGAAAATT+TGG | + | chr6.2:12758030-12758049 | None:intergenic | 30.0% | |
| TTATGGTGATATTGCTATGA+AGG | - | chr6.2:12756987-12757006 | MS.gene074317:intron | 30.0% | |
| TTGGAAATTTCACAATGACA+AGG | - | chr6.2:12757823-12757842 | MS.gene074317:intron | 30.0% | |
| TTGTAGTGTTAGTACTAACT+CGG | - | chr6.2:12757664-12757683 | MS.gene074317:intron | 30.0% | |
| TTTGAAGGCTTAGGATTAAA+GGG | - | chr6.2:12756005-12756024 | MS.gene074317:intron | 30.0% | |
| !! | ATATTCCAATGAAGCACTTT+TGG | - | chr6.2:12758614-12758633 | MS.gene074317:CDS | 30.0% |
| !! | TGCCTGTTTGAAACTTTTTA+TGG | - | chr6.2:12756970-12756989 | MS.gene074317:intron | 30.0% |
| !!! | CCTCGTAGAGATTTTTTTTA+TGG | - | chr6.2:12756749-12756768 | MS.gene074317:intron | 30.0% |
| !!! | GCTTTAAAGTGTGAATTTTG+AGG | - | chr6.2:12756591-12756610 | MS.gene074317:CDS | 30.0% |
| !!! | GGCATTTTAATTGTTGCTTT+AGG | - | chr6.2:12758648-12758667 | MS.gene074317:CDS | 30.0% |
| !!! | TTTTCTGAAGCTTTTAGTTC+CGG | + | chr6.2:12757741-12757760 | None:intergenic | 30.0% |
| AATGAAGAATAGGAAAAGGC+AGG | + | chr6.2:12757891-12757910 | None:intergenic | 35.0% | |
| ACTCTTGCATTTAAGGAGAA+AGG | + | chr6.2:12757267-12757286 | None:intergenic | 35.0% | |
| ATGTGAGAATTTGAAGGCTT+AGG | - | chr6.2:12755996-12756015 | MS.gene074317:intron | 35.0% | |
| ATTAAGGTCTTTGACCTTTG+AGG | - | chr6.2:12756509-12756528 | MS.gene074317:intron | 35.0% | |
| CATTTCTCAGAGACCAAATA+AGG | + | chr6.2:12757988-12758007 | None:intergenic | 35.0% | |
| CCTGAATGAAGAATAGGAAA+AGG | + | chr6.2:12757895-12757914 | None:intergenic | 35.0% | |
| GAGAAATGCAAAACGTCAAT+CGG | - | chr6.2:12758000-12758019 | MS.gene074317:intron | 35.0% | |
| TTAAGGTCTTTGACCTTTGA+GGG | - | chr6.2:12756510-12756529 | MS.gene074317:intron | 35.0% | |
| ! | AGACTCTAAAGAACCATGAA+AGG | + | chr6.2:12757232-12757251 | None:intergenic | 35.0% |
| ! | CCTTTTCCTATTCTTCATTC+AGG | - | chr6.2:12757892-12757911 | MS.gene074317:intron | 35.0% |
| ! | TAGAAAGCGGCGATAATTTT+AGG | - | chr6.2:12757063-12757082 | MS.gene074317:intron | 35.0% |
| ! | TGTTTGCTGATGATAGAAAG+CGG | - | chr6.2:12757050-12757069 | MS.gene074317:intron | 35.0% |
| !! | CTTTAAAGCATGTGAGACTA+CGG | + | chr6.2:12756580-12756599 | None:intergenic | 35.0% |
| !! | GAAAATACACAGGCCTTATT+TGG | - | chr6.2:12757972-12757991 | MS.gene074317:intron | 35.0% |
| !! | TATTATCAGTGTCGACATGT+TGG | - | chr6.2:12756218-12756237 | MS.gene074317:intron | 35.0% |
| !! | TATTTTCTCGACGACTAGTT+TGG | + | chr6.2:12757959-12757978 | None:intergenic | 35.0% |
| !! | TTAGGTGGCTTTGTTATTCT+CGG | - | chr6.2:12758666-12758685 | MS.gene074317:CDS | 35.0% |
| !! | TTTGCAACATTTTGGTATCC+AGG | - | chr6.2:12758450-12758469 | MS.gene074317:intron | 35.0% |
| !!! | CTTTTCGGAATTTGTTAGCA+TGG | + | chr6.2:12757572-12757591 | None:intergenic | 35.0% |
| !!! | TGCTACTGGTCTTTTAGAAA+AGG | - | chr6.2:12758557-12758576 | MS.gene074317:intron | 35.0% |
| AAAAACTGGACCAGATCAAC+AGG | + | chr6.2:12758229-12758248 | None:intergenic | 40.0% | |
| AAAACTGGACCAGATCAACA+GGG | + | chr6.2:12758228-12758247 | None:intergenic | 40.0% | |
| AAGATCGGGAATTTGACTAC+TGG | + | chr6.2:12755714-12755733 | None:intergenic | 40.0% | |
| AAGGCTACATTCCTTCAAAC+CGG | - | chr6.2:12758576-12758595 | MS.gene074317:intron | 40.0% | |
| ATACCAAAGAACACATGCCA+TGG | + | chr6.2:12758507-12758526 | None:intergenic | 40.0% | |
| ATTTCTACAGCCTGCATTCA+TGG | - | chr6.2:12757855-12757874 | MS.gene074317:intron | 40.0% | |
| CGCTACTCTTCTGTTAACAT+GGG | - | chr6.2:12755764-12755783 | MS.gene074317:CDS | 40.0% | |
| CTTCACCATTGATCAGAACA+AGG | + | chr6.2:12756905-12756924 | None:intergenic | 40.0% | |
| CTTGTTCTGATCAATGGTGA+AGG | - | chr6.2:12756903-12756922 | MS.gene074317:intron | 40.0% | |
| GAAAGAGATCGAAAACAAGG+CGG | + | chr6.2:12757462-12757481 | None:intergenic | 40.0% | |
| GAACTAGATTGAACCACAGT+TGG | + | chr6.2:12758181-12758200 | None:intergenic | 40.0% | |
| GAGGAAAGAGATCGAAAACA+AGG | + | chr6.2:12757465-12757484 | None:intergenic | 40.0% | |
| GCTCTCATTCTGAGCTTAAT+TGG | - | chr6.2:12757788-12757807 | MS.gene074317:intron | 40.0% | |
| TAAAAGACCAGTAGCAGTTG+TGG | + | chr6.2:12758553-12758572 | None:intergenic | 40.0% | |
| TAAGGTCTTTGACCTTTGAG+GGG | - | chr6.2:12756511-12756530 | MS.gene074317:intron | 40.0% | |
| TAGTCGTCGAGAAAATACAC+AGG | - | chr6.2:12757962-12757981 | MS.gene074317:intron | 40.0% | |
| TCGCTACTCTTCTGTTAACA+TGG | - | chr6.2:12755763-12755782 | MS.gene074317:CDS | 40.0% | |
| TGATCGAAATAGTACACCTC+AGG | + | chr6.2:12758092-12758111 | None:intergenic | 40.0% | |
| TTCATTGGTGAAGCCTTTCA+TGG | - | chr6.2:12757216-12757235 | MS.gene074317:intron | 40.0% | |
| ! | ACATGGGTTGTTCATTTCAG+AGG | - | chr6.2:12755780-12755799 | MS.gene074317:CDS | 40.0% |
| ! | ATTTGTTAGCATGGCGTAGT+TGG | + | chr6.2:12757563-12757582 | None:intergenic | 40.0% |
| ! | CTAATTGGTTCAACCAACTG+TGG | - | chr6.2:12758165-12758184 | MS.gene074317:intron | 40.0% |
| ! | CTGCTGGATTTGCAACATTT+TGG | - | chr6.2:12758442-12758461 | MS.gene074317:intron | 40.0% |
| ! | TAAGAAGTGGTTTGCGCATT+AGG | - | chr6.2:12756636-12756655 | MS.gene074317:CDS | 40.0% |
| ! | TCTGAGCTTAATTGGTCTCT+GGG | - | chr6.2:12757796-12757815 | MS.gene074317:intron | 40.0% |
| ! | TTCTGAGCTTAATTGGTCTC+TGG | - | chr6.2:12757795-12757814 | MS.gene074317:intron | 40.0% |
| !! | AAGCGGCGATAATTTTAGGA+TGG | - | chr6.2:12757067-12757086 | MS.gene074317:intron | 40.0% |
| !! | ATTGGCCTTGTTCTGATCAA+TGG | - | chr6.2:12756897-12756916 | MS.gene074317:intron | 40.0% |
| !! | GCAGAGAGCATTTAGATACA+TGG | + | chr6.2:12758407-12758426 | None:intergenic | 40.0% |
| !! | GGTTCTTTAGAGTCTATGCT+TGG | - | chr6.2:12757237-12757256 | MS.gene074317:intron | 40.0% |
| !! | GTTGACCAAAAGTGCTTCAT+TGG | + | chr6.2:12758622-12758641 | None:intergenic | 40.0% |
| !!! | TTCGGACATTTTAGTTCCTG+AGG | - | chr6.2:12758073-12758092 | MS.gene074317:intron | 40.0% |
| AGAATAGGAAAAGGCAGGCA+AGG | + | chr6.2:12757886-12757905 | None:intergenic | 45.0% | |
| AGATCGAACCAGTAAGACCT+CGG | - | chr6.2:12758133-12758152 | MS.gene074317:intron | 45.0% | |
| AGTTCACACGAACACGAAGT+TGG | - | chr6.2:12756726-12756745 | MS.gene074317:intron | 45.0% | |
| ATATCGCGATATGACGTTGC+CGG | + | chr6.2:12758598-12758617 | None:intergenic | 45.0% | |
| ATCGGGAATTTGACTACTGG+TGG | + | chr6.2:12755711-12755730 | None:intergenic | 45.0% | |
| ATGCCATGGCATGTGTTCTT+TGG | - | chr6.2:12758501-12758520 | MS.gene074317:intron | 45.0% | |
| CCAATTAGATCATGATCCCG+AGG | + | chr6.2:12758153-12758172 | None:intergenic | 45.0% | |
| CCTCGGGATCATGATCTAAT+TGG | - | chr6.2:12758150-12758169 | MS.gene074317:intron | 45.0% | |
| TAACCGACACTAACACGTGT+GGG | + | chr6.2:12756156-12756175 | None:intergenic | 45.0% | |
| TACAGCCTGCATTCATGGTT+AGG | - | chr6.2:12757860-12757879 | MS.gene074317:intron | 45.0% | |
| TATCCCACACGTGTTAGTGT+CGG | - | chr6.2:12756150-12756169 | MS.gene074317:intron | 45.0% | |
| TGGGTTGTTCATTTCAGAGG+AGG | - | chr6.2:12755783-12755802 | MS.gene074317:CDS | 45.0% | |
| ! | CTACTATTTCTTGAGCCTCC+TGG | + | chr6.2:12758471-12758490 | None:intergenic | 45.0% |
| ! | CTCTCTGCACTTTTGTCAGT+TGG | - | chr6.2:12758419-12758438 | MS.gene074317:intron | 45.0% |
| ! | GAACTGGTCTGTTCATCTGT+TGG | + | chr6.2:12758206-12758225 | None:intergenic | 45.0% |
| ! | GCACTTTTGGTCAACTGCTT+AGG | - | chr6.2:12758627-12758646 | MS.gene074317:CDS | 45.0% |
| ! | TTCGCAACAGTGAGAGGTAT+TGG | - | chr6.2:12755732-12755751 | MS.gene074317:CDS | 45.0% |
| !! | ATATGACGTTGCCGGTTTGA+AGG | + | chr6.2:12758590-12758609 | None:intergenic | 45.0% |
| !! | GCAACATTTTGGTATCCAGG+AGG | - | chr6.2:12758453-12758472 | MS.gene074317:intron | 45.0% |
| AGACCAGTTCCCTGTTGATC+TGG | - | chr6.2:12758216-12758235 | MS.gene074317:intron | 50.0% | |
| CAAGGCCTAACCATGAATGC+AGG | + | chr6.2:12757868-12757887 | None:intergenic | 50.0% | |
| CCTAAGCCATGGAGATACCT+TGG | + | chr6.2:12756541-12756560 | None:intergenic | 50.0% | |
| CCTCTCACTGTTGCGAAGAT+CGG | + | chr6.2:12755729-12755748 | None:intergenic | 50.0% | |
| CTCCATGGCTTAGGCCTATT+GGG | - | chr6.2:12756547-12756566 | MS.gene074317:CDS | 50.0% | |
| CTCTCACTGTTGCGAAGATC+GGG | + | chr6.2:12755728-12755747 | None:intergenic | 50.0% | |
| GATCGAACCAGTAAGACCTC+GGG | - | chr6.2:12758134-12758153 | MS.gene074317:intron | 50.0% | |
| GCTATAGCCACAACTGCTAC+TGG | - | chr6.2:12758543-12758562 | MS.gene074317:intron | 50.0% | |
| GTAACCGACACTAACACGTG+TGG | + | chr6.2:12756157-12756176 | None:intergenic | 50.0% | |
| GTAGAGTTGCGCTAATGCCA+TGG | - | chr6.2:12758487-12758506 | MS.gene074317:intron | 50.0% | |
| TCATGATCCCGAGGTCTTAC+TGG | + | chr6.2:12758144-12758163 | None:intergenic | 50.0% | |
| TCTCCATGGCTTAGGCCTAT+TGG | - | chr6.2:12756546-12756565 | MS.gene074317:CDS | 50.0% | |
| ! | CACTTTTGTCAGTTGGCTGC+TGG | - | chr6.2:12758426-12758445 | MS.gene074317:intron | 50.0% |
| ! | CAGCACTGGATGAACCTACA+TGG | + | chr6.2:12756871-12756890 | None:intergenic | 50.0% |
| ! | CCAAGGTATCTCCATGGCTT+AGG | - | chr6.2:12756538-12756557 | MS.gene074317:CDS | 50.0% |
| ! | GTAGGTTCATCCAGTGCTGA+TGG | - | chr6.2:12756872-12756891 | MS.gene074317:intron | 50.0% |
| ! | TAATTGGTCTCTGGGCTGCT+TGG | - | chr6.2:12757804-12757823 | MS.gene074317:intron | 50.0% |
| ! | TAGCATGGCGTAGTTGGTCT+TGG | + | chr6.2:12757557-12757576 | None:intergenic | 50.0% |
| ! | TATGACGTGCTCAGCTCTGA+AGG | - | chr6.2:12756248-12756267 | MS.gene074317:intron | 50.0% |
| !! | ATGACGTGCTCAGCTCTGAA+GGG | - | chr6.2:12756249-12756268 | MS.gene074317:intron | 50.0% |
| !! | CATCCAGTGCTGATGGTGAT+TGG | - | chr6.2:12756879-12756898 | MS.gene074317:intron | 50.0% |
| ACTACGGCAACGTGCCCAAT+AGG | + | chr6.2:12756564-12756583 | None:intergenic | 55.0% | |
| AGGCCAATCACCATCAGCAC+TGG | + | chr6.2:12756885-12756904 | None:intergenic | 55.0% | |
| AGGGATGCTTGCGTACAGGA+CGG | - | chr6.2:12757712-12757731 | MS.gene074317:intron | 55.0% | |
| CCGATCTTCGCAACAGTGAG+AGG | - | chr6.2:12755726-12755745 | MS.gene074317:CDS | 55.0% | |
| CTTGCGTACAGGACGGTATC+CGG | - | chr6.2:12757719-12757738 | MS.gene074317:intron | 55.0% | |
| GGACCAGATCAACAGGGAAC+TGG | + | chr6.2:12758222-12758241 | None:intergenic | 55.0% | |
| TGCCCAATAGGCCTAAGCCA+TGG | + | chr6.2:12756552-12756571 | None:intergenic | 55.0% | |
| ! | GGTGCTCCAAGGTATCTCCA+TGG | - | chr6.2:12756532-12756551 | MS.gene074317:CDS | 55.0% |
| ! | TACCTTGGAGCACCCCTCAA+AGG | + | chr6.2:12756526-12756545 | None:intergenic | 55.0% |
| GTGCAGGGATGCTTGCGTAC+AGG | - | chr6.2:12757708-12757727 | MS.gene074317:intron | 60.0% | |
| !! | GACCTTTGAGGGGTGCTCCA+AGG | - | chr6.2:12756521-12756540 | MS.gene074317:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 12755699 | 12758740 | 12755699 | ID=MS.gene074317 |
| chr6.2 | mRNA | 12755699 | 12758740 | 12755699 | ID=MS.gene074317.t1;Parent=MS.gene074317 |
| chr6.2 | exon | 12758594 | 12758740 | 12758594 | ID=MS.gene074317.t1.exon1;Parent=MS.gene074317.t1 |
| chr6.2 | CDS | 12758594 | 12758740 | 12758594 | ID=cds.MS.gene074317.t1;Parent=MS.gene074317.t1 |
| chr6.2 | exon | 12757515 | 12757563 | 12757515 | ID=MS.gene074317.t1.exon2;Parent=MS.gene074317.t1 |
| chr6.2 | CDS | 12757515 | 12757563 | 12757515 | ID=cds.MS.gene074317.t1;Parent=MS.gene074317.t1 |
| chr6.2 | exon | 12756526 | 12756725 | 12756526 | ID=MS.gene074317.t1.exon3;Parent=MS.gene074317.t1 |
| chr6.2 | CDS | 12756526 | 12756725 | 12756526 | ID=cds.MS.gene074317.t1;Parent=MS.gene074317.t1 |
| chr6.2 | exon | 12755699 | 12756001 | 12755699 | ID=MS.gene074317.t1.exon4;Parent=MS.gene074317.t1 |
| chr6.2 | CDS | 12755699 | 12756001 | 12755699 | ID=cds.MS.gene074317.t1;Parent=MS.gene074317.t1 |
| Gene Sequence |
| Protein sequence |
