Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059944.t1 | XP_013457732.1 | 95.6 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 2.50E-106 | 394.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059944.t1 | Q9FGS5 | 51.2 | 213 | 93 | 5 | 1 | 206 | 1 | 209 | 2.6e-48 | 193.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059944.t1 | I3SMV0 | 95.6 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 1.8e-106 | 394.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene059944 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene059944 | 0.82487 | 6.39E-54 | -1.69E-46 |
| MS.gene05104 | MS.gene059944 | 0.806062 | 9.87E-50 | -1.69E-46 |
| MS.gene053031 | MS.gene059944 | 0.807623 | 4.62E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene059944 | 0.809093 | 2.24E-50 | -1.69E-46 |
| MS.gene054708 | MS.gene059944 | 0.804237 | 2.38E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene059944 | 0.804437 | 2.16E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene059944 | 0.828053 | 1.11E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene059944 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene059944 | 0.803372 | 3.60E-49 | -1.69E-46 |
| MS.gene058174 | MS.gene059944 | 0.820616 | 6.24E-53 | -1.69E-46 |
| MS.gene058175 | MS.gene059944 | 0.807213 | 5.64E-50 | -1.69E-46 |
| MS.gene058179 | MS.gene059944 | 0.800927 | 1.15E-48 | -1.69E-46 |
| MS.gene058180 | MS.gene059944 | 0.810215 | 1.29E-50 | -1.69E-46 |
| MS.gene058840 | MS.gene059944 | 0.811411 | 7.09E-51 | -1.69E-46 |
| MS.gene059037 | MS.gene059944 | 0.815612 | 8.46E-52 | -1.69E-46 |
| MS.gene059367 | MS.gene059944 | -0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene059943 | MS.gene059944 | 0.820108 | 8.16E-53 | -1.69E-46 |
| MS.gene059944 | MS.gene060482 | -0.804677 | 1.93E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene061402 | -0.810056 | 1.39E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene065540 | -0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene067332 | -0.811242 | 7.72E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene068297 | 0.811326 | 7.40E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene069431 | 0.822492 | 2.30E-53 | -1.69E-46 |
| MS.gene059944 | MS.gene071843 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene071844 | 0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene071931 | -0.802452 | 5.57E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene071942 | 0.82638 | 2.80E-54 | -1.69E-46 |
| MS.gene059944 | MS.gene072806 | 0.813987 | 1.94E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene073118 | -0.8045 | 2.10E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene08520 | -0.812731 | 3.66E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene08732 | 0.809895 | 1.51E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene21856 | 0.815135 | 1.08E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene24974 | 0.809056 | 2.28E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene26517 | 0.8039 | 2.80E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene26886 | 0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene27827 | 0.813573 | 2.39E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene31869 | -0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene34171 | -0.80378 | 2.96E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene34194 | -0.809621 | 1.73E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene35338 | -0.80249 | 5.47E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene36927 | 0.807505 | 4.89E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene38094 | 0.818607 | 1.79E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene38095 | 0.827928 | 1.19E-54 | -1.69E-46 |
| MS.gene059944 | MS.gene38097 | 0.843596 | 1.27E-58 | -1.69E-46 |
| MS.gene059944 | MS.gene38172 | 0.817593 | 3.04E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene38173 | 0.827323 | 1.67E-54 | -1.69E-46 |
| MS.gene059944 | MS.gene38174 | 0.819432 | 1.16E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene41014 | 0.804072 | 2.57E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene42080 | 0.804698 | 1.91E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene44712 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene44722 | 0.804168 | 2.46E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene45737 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene46024 | 0.838602 | 2.61E-57 | -1.69E-46 |
| MS.gene059944 | MS.gene46025 | 0.832614 | 8.55E-56 | -1.69E-46 |
| MS.gene059944 | MS.gene46027 | 0.816403 | 5.63E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene46433 | 0.827831 | 1.26E-54 | -1.69E-46 |
| MS.gene059944 | MS.gene48314 | 0.844599 | 6.84E-59 | -1.69E-46 |
| MS.gene059944 | MS.gene48315 | 0.807729 | 4.38E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene48806 | 0.80721 | 5.65E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene48807 | 0.823119 | 1.64E-53 | -1.69E-46 |
| MS.gene059944 | MS.gene49181 | 0.825842 | 3.76E-54 | -1.69E-46 |
| MS.gene059944 | MS.gene50091 | -0.810218 | 1.29E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene51118 | 0.806178 | 9.33E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene54277 | 0.800147 | 1.65E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene54347 | 0.807642 | 4.57E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene56009 | 0.813709 | 2.23E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene58464 | 0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene59006 | 0.808402 | 3.15E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene59273 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene59395 | 0.821612 | 3.68E-53 | -1.69E-46 |
| MS.gene059944 | MS.gene59396 | 0.810423 | 1.16E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene60649 | 0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene059944 | MS.gene62114 | 0.809472 | 1.86E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene64070 | 0.809856 | 1.54E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene64372 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene65951 | 0.803627 | 3.18E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene68948 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene70061 | 0.825452 | 4.65E-54 | -1.69E-46 |
| MS.gene059944 | MS.gene70062 | 0.805563 | 1.26E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene70420 | 0.837061 | 6.49E-57 | -1.69E-46 |
| MS.gene059944 | MS.gene71326 | -0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene71525 | 0.833764 | 4.42E-56 | -1.69E-46 |
| MS.gene059944 | MS.gene73493 | -0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene75396 | 0.806524 | 7.89E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene76737 | 0.807647 | 4.56E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene76738 | 0.805689 | 1.18E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene77033 | 0.822962 | 1.79E-53 | -1.69E-46 |
| MS.gene059944 | MS.gene77471 | 0.842459 | 2.55E-58 | -1.69E-46 |
| MS.gene059944 | MS.gene80044 | 0.812063 | 5.12E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene82008 | -0.811772 | 5.92E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene82245 | 0.817585 | 3.06E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene84568 | 0.821627 | 3.65E-53 | -1.69E-46 |
| MS.gene059944 | MS.gene85601 | -0.800004 | 1.77E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene85638 | 0.800803 | 1.21E-48 | -1.69E-46 |
| MS.gene059944 | MS.gene91973 | 0.845229 | 4.63E-59 | -1.69E-46 |
| MS.gene059944 | MS.gene91976 | 0.817936 | 2.55E-52 | -1.69E-46 |
| MS.gene059944 | MS.gene91977 | 0.830151 | 3.45E-55 | -1.69E-46 |
| MS.gene059944 | MS.gene92939 | 0.805746 | 1.15E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene94628 | -0.803854 | 2.86E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene94790 | 0.835561 | 1.56E-56 | -1.69E-46 |
| MS.gene059944 | MS.gene97182 | 0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene059944 | MS.gene97500 | 0.804962 | 1.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059944.t1 | MTR_4g104730 | 95.122 | 205 | 10 | 0 | 1 | 205 | 1 | 205 | 1.24e-148 | 411 |
| MS.gene059944.t1 | MTR_4g104700 | 95.610 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 3.84e-140 | 390 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059944.t1 | AT5G50200 | 51.174 | 213 | 93 | 5 | 1 | 206 | 1 | 209 | 5.38e-67 | 205 |
| MS.gene059944.t1 | AT5G50200 | 51.174 | 213 | 93 | 5 | 1 | 206 | 1 | 209 | 5.38e-67 | 205 |
| MS.gene059944.t1 | AT5G50200 | 51.174 | 213 | 93 | 5 | 1 | 206 | 1 | 209 | 5.38e-67 | 205 |
| MS.gene059944.t1 | AT4G24715 | 49.524 | 210 | 98 | 5 | 1 | 205 | 23 | 229 | 1.85e-64 | 199 |
Find 54 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGCATAACTTCAGCTTTA+TGG | 0.105787 | 8.1:-19811561 | None:intergenic |
| CATTGTCTTCAGTGCTTTCT+CGG | 0.283646 | 8.1:+19811883 | MS.gene059944:CDS |
| ATCTATGCAGTTATGTTATC+TGG | 0.287035 | 8.1:+19811467 | MS.gene059944:intron |
| CTCAAATTCAATCACTGCTT+TGG | 0.355774 | 8.1:-19811957 | None:intergenic |
| TACTTACCTTGTCCATGCTT+AGG | 0.361592 | 8.1:-19811345 | None:intergenic |
| ACTTACCTTGTCCATGCTTA+GGG | 0.362581 | 8.1:-19811344 | None:intergenic |
| TTTGAGATCAATGCAATTAG+TGG | 0.365486 | 8.1:+19811833 | MS.gene059944:CDS |
| TCTTACCCGCGTTCGTGCTT+TGG | 0.366181 | 8.1:-19811799 | None:intergenic |
| TGCGTTTGATTCTAATGATA+AGG | 0.378193 | 8.1:+19811763 | MS.gene059944:CDS |
| TGTTTAGCTGAAATTTGTTA+TGG | 0.421382 | 8.1:+19811273 | MS.gene059944:CDS |
| AATGATAAGGAAGTGGCTTA+TGG | 0.427412 | 8.1:+19811776 | MS.gene059944:CDS |
| GCTTTCTCGGTTGTGTCCCT+AGG | 0.448319 | 8.1:+19811896 | MS.gene059944:CDS |
| GATTCAGCGCGATGTGCCTC+AGG | 0.452907 | 8.1:+19811718 | MS.gene059944:CDS |
| TAGGATGAGTCTGTTCCAGC+TGG | 0.461830 | 8.1:-19811533 | None:intergenic |
| GTCCCGGGAGAGTTCATCCT+CGG | 0.470868 | 8.1:-19811621 | None:intergenic |
| AGCTGAAATTTGTTATGGAA+AGG | 0.496497 | 8.1:+19811278 | MS.gene059944:CDS |
| CTTCTATATTGAAAAGAGGA+AGG | 0.500127 | 8.1:+19811925 | MS.gene059944:CDS |
| TGCATTGATCTCAAACAAGT+TGG | 0.505667 | 8.1:-19811825 | None:intergenic |
| TGTTCTTCTATATTGAAAAG+AGG | 0.523926 | 8.1:+19811921 | MS.gene059944:CDS |
| TAGGGGAAGCTGTGACCTCA+AGG | 0.526901 | 8.1:-19811326 | None:intergenic |
| TGATTCTAATGATAAGGAAG+TGG | 0.527081 | 8.1:+19811769 | MS.gene059944:CDS |
| GTACAATGCTTCCAACAAAA+CGG | 0.527554 | 8.1:+19811676 | MS.gene059944:CDS |
| AGACCGAGGATGAACTCTCC+CGG | 0.533219 | 8.1:+19811618 | MS.gene059944:CDS |
| CTAAACAAAACTTTCCCAGC+TGG | 0.548684 | 8.1:+19811518 | MS.gene059944:CDS |
| TAGACAAAATCAGTGGGACA+TGG | 0.555670 | 8.1:+19811492 | MS.gene059944:CDS |
| TTCTATATTGAAAAGAGGAA+GGG | 0.562873 | 8.1:+19811926 | MS.gene059944:CDS |
| GTTGGAAGCATTGTACGGCA+TGG | 0.569636 | 8.1:-19811669 | None:intergenic |
| AACTTGCCAACACAAAATGT+TGG | 0.571501 | 8.1:+19811646 | MS.gene059944:CDS |
| GACCGAGGATGAACTCTCCC+GGG | 0.572562 | 8.1:+19811619 | MS.gene059944:CDS |
| CGAGAAAGCACTGAAGACAA+TGG | 0.583492 | 8.1:-19811882 | None:intergenic |
| GTCACAGCTTCCCCTAAGCA+TGG | 0.584742 | 8.1:+19811333 | MS.gene059944:CDS |
| CAATATAGAAGAACACACCT+AGG | 0.601286 | 8.1:-19811913 | None:intergenic |
| CTTACCTTGTCCATGCTTAG+GGG | 0.615805 | 8.1:-19811343 | None:intergenic |
| AGACAAAATCAGTGGGACAT+GGG | 0.616176 | 8.1:+19811493 | MS.gene059944:CDS |
| TATGGCAGCACACAAGCTTG+TGG | 0.620979 | 8.1:+19811230 | None:intergenic |
| TTCTTTGAAAAGAACCCTTG+AGG | 0.622622 | 8.1:+19811311 | MS.gene059944:CDS |
| ATCATTAGAATCAAACGCAT+AGG | 0.624906 | 8.1:-19811759 | None:intergenic |
| AGGGGAAGCTGTGACCTCAA+GGG | 0.635053 | 8.1:-19811325 | None:intergenic |
| TTATGGCCAAAGCACGAACG+CGG | 0.635304 | 8.1:+19811793 | MS.gene059944:CDS |
| CTGGAGTAGACAAAATCAGT+GGG | 0.640296 | 8.1:+19811486 | MS.gene059944:CDS |
| AGGATGAGTCTGTTCCAGCT+GGG | 0.643710 | 8.1:-19811532 | None:intergenic |
| TCTGGAGTAGACAAAATCAG+TGG | 0.645792 | 8.1:+19811485 | MS.gene059944:CDS |
| GCGCTGAATCAACCACTCGA+AGG | 0.649799 | 8.1:-19811705 | None:intergenic |
| CCTCGGTCTTTCTCCAAGCG+CGG | 0.651070 | 8.1:-19811604 | None:intergenic |
| AATATAGAAGAACACACCTA+GGG | 0.653049 | 8.1:-19811912 | None:intergenic |
| TATGGCCAAAGCACGAACGC+GGG | 0.662298 | 8.1:+19811794 | MS.gene059944:CDS |
| GCTTCCCCTAAGCATGGACA+AGG | 0.668529 | 8.1:+19811339 | MS.gene059944:CDS |
| AGATATCAAGTGTCGCGTGG+CGG | 0.669328 | 8.1:-19811856 | None:intergenic |
| AGCAGATATCAAGTGTCGCG+TGG | 0.669511 | 8.1:-19811859 | None:intergenic |
| CGTACAAAGTACGTGGCCTG+AGG | 0.676173 | 8.1:-19811734 | None:intergenic |
| AAACGGTGCAAACCTTCGAG+TGG | 0.691223 | 8.1:+19811693 | MS.gene059944:CDS |
| CCGCGCTTGGAGAAAGACCG+AGG | 0.703551 | 8.1:+19811604 | MS.gene059944:CDS |
| ATAGGCACGTACAAAGTACG+TGG | 0.771630 | 8.1:-19811741 | None:intergenic |
| AAAGCTGAAGTTATGCTACG+CGG | 0.775950 | 8.1:+19811565 | MS.gene059944:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATTGAGTTTATATTGA+AGG | - | chr8.1:19811438-19811457 | None:intergenic | 20.0% |
| ! | TAATTAAATACGCCAATACA+AGG | - | chr8.1:19811387-19811406 | None:intergenic | 25.0% |
| ! | TGTTCTTCTATATTGAAAAG+AGG | + | chr8.1:19811921-19811940 | MS.gene059944:CDS | 25.0% |
| ! | TTCTATATTGAAAAGAGGAA+GGG | + | chr8.1:19811926-19811945 | MS.gene059944:CDS | 25.0% |
| !!! | TGTTTAGCTGAAATTTGTTA+TGG | + | chr8.1:19811273-19811292 | MS.gene059944:CDS | 25.0% |
| AATATAGAAGAACACACCTA+GGG | - | chr8.1:19811915-19811934 | None:intergenic | 30.0% | |
| ATCATTAGAATCAAACGCAT+AGG | - | chr8.1:19811762-19811781 | None:intergenic | 30.0% | |
| ATCTATGCAGTTATGTTATC+TGG | + | chr8.1:19811467-19811486 | MS.gene059944:intron | 30.0% | |
| CTTCTATATTGAAAAGAGGA+AGG | + | chr8.1:19811925-19811944 | MS.gene059944:CDS | 30.0% | |
| TGATTCTAATGATAAGGAAG+TGG | + | chr8.1:19811769-19811788 | MS.gene059944:CDS | 30.0% | |
| TGCGTTTGATTCTAATGATA+AGG | + | chr8.1:19811763-19811782 | MS.gene059944:CDS | 30.0% | |
| ! | TAAGATTTTGCACCTTGTAT+TGG | + | chr8.1:19811372-19811391 | MS.gene059944:intron | 30.0% |
| ! | TTTGAGATCAATGCAATTAG+TGG | + | chr8.1:19811833-19811852 | MS.gene059944:CDS | 30.0% |
| !! | AGCTGAAATTTGTTATGGAA+AGG | + | chr8.1:19811278-19811297 | MS.gene059944:CDS | 30.0% |
| AACTTGCCAACACAAAATGT+TGG | + | chr8.1:19811646-19811665 | MS.gene059944:CDS | 35.0% | |
| AATGATAAGGAAGTGGCTTA+TGG | + | chr8.1:19811776-19811795 | MS.gene059944:CDS | 35.0% | |
| CAATATAGAAGAACACACCT+AGG | - | chr8.1:19811916-19811935 | None:intergenic | 35.0% | |
| CTCAAATTCAATCACTGCTT+TGG | - | chr8.1:19811960-19811979 | None:intergenic | 35.0% | |
| GTACAATGCTTCCAACAAAA+CGG | + | chr8.1:19811676-19811695 | MS.gene059944:CDS | 35.0% | |
| GTAGCATAACTTCAGCTTTA+TGG | - | chr8.1:19811564-19811583 | None:intergenic | 35.0% | |
| ! | TGCATTGATCTCAAACAAGT+TGG | - | chr8.1:19811828-19811847 | None:intergenic | 35.0% |
| ! | TTCTTTGAAAAGAACCCTTG+AGG | + | chr8.1:19811311-19811330 | MS.gene059944:CDS | 35.0% |
| !!! | CTTCAGCTTTATGGTTTTGT+AGG | - | chr8.1:19811555-19811574 | None:intergenic | 35.0% |
| !!! | GTTTTGTTGGAAGCATTGTA+CGG | - | chr8.1:19811677-19811696 | None:intergenic | 35.0% |
| AAAGCTGAAGTTATGCTACG+CGG | + | chr8.1:19811565-19811584 | MS.gene059944:CDS | 40.0% | |
| ACTTACCTTGTCCATGCTTA+GGG | - | chr8.1:19811347-19811366 | None:intergenic | 40.0% | |
| AGACAAAATCAGTGGGACAT+GGG | + | chr8.1:19811493-19811512 | MS.gene059944:CDS | 40.0% | |
| CATTGTCTTCAGTGCTTTCT+CGG | + | chr8.1:19811883-19811902 | MS.gene059944:CDS | 40.0% | |
| CTAAACAAAACTTTCCCAGC+TGG | + | chr8.1:19811518-19811537 | MS.gene059944:CDS | 40.0% | |
| CTGGAGTAGACAAAATCAGT+GGG | + | chr8.1:19811486-19811505 | MS.gene059944:CDS | 40.0% | |
| TACTTACCTTGTCCATGCTT+AGG | - | chr8.1:19811348-19811367 | None:intergenic | 40.0% | |
| TAGACAAAATCAGTGGGACA+TGG | + | chr8.1:19811492-19811511 | MS.gene059944:CDS | 40.0% | |
| ! | TCTGGAGTAGACAAAATCAG+TGG | + | chr8.1:19811485-19811504 | MS.gene059944:CDS | 40.0% |
| ATAGGCACGTACAAAGTACG+TGG | - | chr8.1:19811744-19811763 | None:intergenic | 45.0% | |
| CTTACCTTGTCCATGCTTAG+GGG | - | chr8.1:19811346-19811365 | None:intergenic | 45.0% | |
| ! | GAAGGTTTGCACCGTTTTGT+TGG | - | chr8.1:19811690-19811709 | None:intergenic | 45.0% |
| ! | GCATGGCCAACATTTTGTGT+TGG | - | chr8.1:19811655-19811674 | None:intergenic | 45.0% |
| !! | CGAGAAAGCACTGAAGACAA+TGG | - | chr8.1:19811885-19811904 | None:intergenic | 45.0% |
| !! | TGTGTTGGCAAGTTTTGTCC+CGG | - | chr8.1:19811640-19811659 | None:intergenic | 45.0% |
| AAACGGTGCAAACCTTCGAG+TGG | + | chr8.1:19811693-19811712 | MS.gene059944:CDS | 50.0% | |
| AGGATGAGTCTGTTCCAGCT+GGG | - | chr8.1:19811535-19811554 | None:intergenic | 50.0% | |
| TAAGCCAAAAAGACCGCGCT+TGG | + | chr8.1:19811591-19811610 | MS.gene059944:CDS | 50.0% | |
| TAGGATGAGTCTGTTCCAGC+TGG | - | chr8.1:19811536-19811555 | None:intergenic | 50.0% | |
| TTATGGCCAAAGCACGAACG+CGG | + | chr8.1:19811793-19811812 | MS.gene059944:CDS | 50.0% | |
| ! | AGATATCAAGTGTCGCGTGG+CGG | - | chr8.1:19811859-19811878 | None:intergenic | 50.0% |
| ! | AGCAGATATCAAGTGTCGCG+TGG | - | chr8.1:19811862-19811881 | None:intergenic | 50.0% |
| ! | TTCTCCAAGCGCGGTCTTTT+TGG | - | chr8.1:19811598-19811617 | None:intergenic | 50.0% |
| !! | GTGTTGGCAAGTTTTGTCCC+GGG | - | chr8.1:19811639-19811658 | None:intergenic | 50.0% |
| !! | GTTGGAAGCATTGTACGGCA+TGG | - | chr8.1:19811672-19811691 | None:intergenic | 50.0% |
| !!! | AGCGCGGTCTTTTTGGCTTA+TGG | - | chr8.1:19811591-19811610 | None:intergenic | 50.0% |
| AGACCGAGGATGAACTCTCC+CGG | + | chr8.1:19811618-19811637 | MS.gene059944:CDS | 55.0% | |
| AGGGGAAGCTGTGACCTCAA+GGG | - | chr8.1:19811328-19811347 | None:intergenic | 55.0% | |
| CGTACAAAGTACGTGGCCTG+AGG | - | chr8.1:19811737-19811756 | None:intergenic | 55.0% | |
| GCGCTGAATCAACCACTCGA+AGG | - | chr8.1:19811708-19811727 | None:intergenic | 55.0% | |
| GCTTCCCCTAAGCATGGACA+AGG | + | chr8.1:19811339-19811358 | MS.gene059944:CDS | 55.0% | |
| GCTTTCTCGGTTGTGTCCCT+AGG | + | chr8.1:19811896-19811915 | MS.gene059944:CDS | 55.0% | |
| GTCACAGCTTCCCCTAAGCA+TGG | + | chr8.1:19811333-19811352 | MS.gene059944:CDS | 55.0% | |
| TAGGGGAAGCTGTGACCTCA+AGG | - | chr8.1:19811329-19811348 | None:intergenic | 55.0% | |
| TATGGCCAAAGCACGAACGC+GGG | + | chr8.1:19811794-19811813 | MS.gene059944:CDS | 55.0% | |
| TCTTACCCGCGTTCGTGCTT+TGG | - | chr8.1:19811802-19811821 | None:intergenic | 55.0% | |
| CCTCGGTCTTTCTCCAAGCG+CGG | - | chr8.1:19811607-19811626 | None:intergenic | 60.0% | |
| GACCGAGGATGAACTCTCCC+GGG | + | chr8.1:19811619-19811638 | MS.gene059944:CDS | 60.0% | |
| GATTCAGCGCGATGTGCCTC+AGG | + | chr8.1:19811718-19811737 | MS.gene059944:CDS | 60.0% | |
| GTCCCGGGAGAGTTCATCCT+CGG | - | chr8.1:19811624-19811643 | None:intergenic | 60.0% | |
| CCGCGCTTGGAGAAAGACCG+AGG | + | chr8.1:19811604-19811623 | MS.gene059944:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 19811231 | 19811982 | 19811231 | ID=MS.gene059944 |
| chr8.1 | mRNA | 19811231 | 19811982 | 19811231 | ID=MS.gene059944.t1;Parent=MS.gene059944 |
| chr8.1 | exon | 19811231 | 19811360 | 19811231 | ID=MS.gene059944.t1.exon1;Parent=MS.gene059944.t1 |
| chr8.1 | CDS | 19811231 | 19811360 | 19811231 | ID=cds.MS.gene059944.t1;Parent=MS.gene059944.t1 |
| chr8.1 | exon | 19811477 | 19811982 | 19811477 | ID=MS.gene059944.t1.exon2;Parent=MS.gene059944.t1 |
| chr8.1 | CDS | 19811477 | 19811982 | 19811477 | ID=cds.MS.gene059944.t1;Parent=MS.gene059944.t1 |
| Gene Sequence |
| Protein sequence |
