Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09765.t1 | XP_003611333.2 | 92.8 | 389 | 19 | 2 | 1 | 381 | 1 | 388 | 1.00E-190 | 676 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09765.t1 | Q8W4K5 | 38.9 | 252 | 120 | 5 | 157 | 383 | 248 | 490 | 8.2e-35 | 149.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09765.t1 | G7JXD4 | 92.8 | 389 | 19 | 2 | 1 | 381 | 1 | 388 | 7.5e-191 | 676.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene09765 | 0.817784 | 2.76E-52 | -1.69E-46 |
| MS.gene049757 | MS.gene09765 | 0.856547 | 2.99E-62 | -1.69E-46 |
| MS.gene050060 | MS.gene09765 | 0.822839 | 1.91E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene09765 | -0.807837 | 4.16E-50 | -1.69E-46 |
| MS.gene050553 | MS.gene09765 | 0.874843 | 4.92E-68 | -1.69E-46 |
| MS.gene050670 | MS.gene09765 | 0.805532 | 1.28E-49 | -1.69E-46 |
| MS.gene051521 | MS.gene09765 | 0.882228 | 1.24E-70 | -1.69E-46 |
| MS.gene052136 | MS.gene09765 | 0.801053 | 1.08E-48 | -1.69E-46 |
| MS.gene052414 | MS.gene09765 | 0.829154 | 6.03E-55 | -1.69E-46 |
| MS.gene052469 | MS.gene09765 | 0.857779 | 1.29E-62 | -1.69E-46 |
| MS.gene053169 | MS.gene09765 | 0.818136 | 2.29E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene09765 | 0.80139 | 9.21E-49 | -1.69E-46 |
| MS.gene053889 | MS.gene09765 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene09765 | 0.808171 | 3.53E-50 | -1.69E-46 |
| MS.gene054556 | MS.gene09765 | 0.816595 | 5.10E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene09765 | 0.809172 | 2.16E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene09765 | 0.829007 | 6.55E-55 | -1.69E-46 |
| MS.gene05556 | MS.gene09765 | 0.82041 | 6.96E-53 | -1.69E-46 |
| MS.gene055741 | MS.gene09765 | 0.844889 | 5.71E-59 | -1.69E-46 |
| MS.gene055744 | MS.gene09765 | 0.854045 | 1.60E-61 | -1.69E-46 |
| MS.gene056233 | MS.gene09765 | 0.822631 | 2.14E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene09765 | 0.81476 | 1.31E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene09765 | 0.819518 | 1.11E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene09765 | 0.820595 | 6.31E-53 | -1.69E-46 |
| MS.gene057537 | MS.gene09765 | 0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene09765 | 0.827251 | 1.73E-54 | -1.69E-46 |
| MS.gene058448 | MS.gene09765 | 0.856294 | 3.55E-62 | -1.69E-46 |
| MS.gene058700 | MS.gene09765 | 0.809369 | 1.96E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene09765 | 0.809416 | 1.91E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene09765 | 0.826385 | 2.79E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene09765 | 0.808417 | 3.13E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene09765 | 0.841942 | 3.50E-58 | -1.69E-46 |
| MS.gene059807 | MS.gene09765 | 0.802729 | 4.89E-49 | -1.69E-46 |
| MS.gene059946 | MS.gene09765 | 0.849914 | 2.38E-60 | -1.69E-46 |
| MS.gene060372 | MS.gene09765 | 0.824939 | 6.15E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene09765 | 0.818231 | 2.18E-52 | -1.69E-46 |
| MS.gene061159 | MS.gene09765 | 0.800022 | 1.75E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09765.t1 | MTR_5g012870 | 94.602 | 389 | 12 | 2 | 1 | 381 | 1 | 388 | 0.0 | 758 |
| MS.gene09765.t1 | MTR_3g110182 | 42.929 | 198 | 102 | 4 | 177 | 371 | 216 | 405 | 1.18e-40 | 149 |
| MS.gene09765.t1 | MTR_7g095500 | 36.860 | 293 | 145 | 6 | 105 | 366 | 175 | 458 | 1.82e-32 | 129 |
| MS.gene09765.t1 | MTR_4g039910 | 33.628 | 339 | 178 | 10 | 25 | 338 | 13 | 329 | 4.02e-32 | 124 |
| MS.gene09765.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 96 | 327 | 1.56e-31 | 122 |
| MS.gene09765.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 226 | 457 | 4.59e-31 | 124 |
| MS.gene09765.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 227 | 458 | 4.60e-31 | 124 |
| MS.gene09765.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 233 | 464 | 5.58e-31 | 123 |
| MS.gene09765.t1 | MTR_1g102980 | 41.410 | 227 | 112 | 4 | 164 | 371 | 95 | 319 | 5.45e-30 | 118 |
| MS.gene09765.t1 | MTR_1g071450 | 39.831 | 236 | 120 | 5 | 161 | 374 | 241 | 476 | 7.61e-30 | 120 |
| MS.gene09765.t1 | MTR_1g102980 | 41.410 | 227 | 112 | 4 | 164 | 371 | 220 | 444 | 2.88e-29 | 118 |
| MS.gene09765.t1 | MTR_3g110182 | 43.262 | 141 | 70 | 3 | 177 | 315 | 214 | 346 | 7.95e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09765.t1 | AT4G17350 | 55.911 | 406 | 152 | 9 | 7 | 390 | 2 | 402 | 4.00e-132 | 385 |
| MS.gene09765.t1 | AT5G47440 | 51.724 | 406 | 171 | 8 | 7 | 391 | 2 | 403 | 7.00e-118 | 348 |
| MS.gene09765.t1 | AT4G16670 | 50.678 | 369 | 152 | 8 | 53 | 393 | 63 | 429 | 3.01e-100 | 304 |
| MS.gene09765.t1 | AT4G16670 | 52.941 | 289 | 108 | 6 | 53 | 314 | 63 | 350 | 1.48e-78 | 246 |
| MS.gene09765.t1 | AT4G16670 | 48.428 | 318 | 107 | 7 | 53 | 314 | 63 | 379 | 3.21e-73 | 233 |
| MS.gene09765.t1 | AT3G22810 | 40.952 | 315 | 143 | 7 | 88 | 371 | 20 | 322 | 8.30e-57 | 189 |
| MS.gene09765.t1 | AT3G22810 | 39.755 | 327 | 156 | 7 | 76 | 371 | 144 | 460 | 3.01e-55 | 189 |
| MS.gene09765.t1 | AT4G14740 | 38.801 | 317 | 149 | 8 | 88 | 371 | 22 | 326 | 3.27e-48 | 167 |
| MS.gene09765.t1 | AT4G14740 | 38.801 | 317 | 149 | 8 | 88 | 371 | 161 | 465 | 7.54e-47 | 167 |
| MS.gene09765.t1 | AT4G14740 | 38.801 | 317 | 149 | 8 | 88 | 371 | 161 | 465 | 7.54e-47 | 167 |
| MS.gene09765.t1 | AT5G43870 | 36.415 | 357 | 194 | 8 | 35 | 371 | 100 | 443 | 2.89e-39 | 146 |
| MS.gene09765.t1 | AT3G22810 | 37.809 | 283 | 130 | 6 | 76 | 329 | 144 | 409 | 5.16e-39 | 144 |
| MS.gene09765.t1 | AT4G32780 | 33.333 | 402 | 209 | 13 | 15 | 371 | 7 | 394 | 1.29e-38 | 143 |
| MS.gene09765.t1 | AT4G32780 | 33.333 | 402 | 209 | 13 | 15 | 371 | 26 | 413 | 1.44e-38 | 143 |
| MS.gene09765.t1 | AT4G14740 | 38.760 | 258 | 115 | 6 | 88 | 314 | 161 | 406 | 1.75e-33 | 129 |
| MS.gene09765.t1 | AT3G63300 | 36.875 | 320 | 151 | 7 | 97 | 383 | 31 | 332 | 8.94e-28 | 112 |
| MS.gene09765.t1 | AT3G63300 | 37.013 | 308 | 145 | 6 | 97 | 371 | 189 | 480 | 1.49e-27 | 114 |
| MS.gene09765.t1 | AT5G43870 | 39.407 | 236 | 117 | 4 | 96 | 314 | 158 | 384 | 2.03e-24 | 103 |
Find 68 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTGAAGATCTCTATTT+TGG | 0.173414 | 5.1:-5992412 | MS.gene09765:CDS |
| ATTATTGTAGGTGTGGTTTA+TGG | 0.231356 | 5.1:-5992481 | MS.gene09765:intron |
| GTTGGTGGCTCAGGAATTTC+TGG | 0.231758 | 5.1:+5994748 | None:intergenic |
| TTGTTGCAGGTTACGGAAAA+AGG | 0.263078 | 5.1:-5992922 | MS.gene09765:intron |
| CCCATTCGACAATTAGTAAA+TGG | 0.310053 | 5.1:+5993700 | None:intergenic |
| TTTGAAGATATGAAAGAAAA+TGG | 0.310378 | 5.1:-5994799 | MS.gene09765:CDS |
| GTAAATGGTATGAGCTTTCC+AGG | 0.322981 | 5.1:+5993715 | None:intergenic |
| TAGTGACAATCACTCTAAAT+TGG | 0.333729 | 5.1:-5993521 | MS.gene09765:CDS |
| AATTGTCGAATGGGTACTAT+TGG | 0.349296 | 5.1:-5993691 | MS.gene09765:CDS |
| GAATGGGTACTATTGGAAAA+TGG | 0.359539 | 5.1:-5993684 | MS.gene09765:CDS |
| GGGAGATTTGTTGCAGGTTA+CGG | 0.396348 | 5.1:-5992929 | MS.gene09765:CDS |
| AGCATCTTATTGTGTTGAAA+TGG | 0.401646 | 5.1:-5993467 | MS.gene09765:CDS |
| CTTACTGCTGCAGCTGCAAC+AGG | 0.415178 | 5.1:-5993358 | MS.gene09765:intron |
| CCATTTACTAATTGTCGAAT+GGG | 0.421708 | 5.1:-5993700 | MS.gene09765:CDS |
| AGCCAACGCGGAGGCTAGTC+CGG | 0.424655 | 5.1:+5993558 | None:intergenic |
| CTCTAAATTGGATGTTGCTA+TGG | 0.425258 | 5.1:-5993509 | MS.gene09765:CDS |
| TCAAGAGGTGTTGGTGGCTC+AGG | 0.432946 | 5.1:+5994739 | None:intergenic |
| ATGCGAGGGAGATTTGTTGC+AGG | 0.435484 | 5.1:-5992935 | MS.gene09765:CDS |
| TTACATCAACAAGAAATATC+AGG | 0.443700 | 5.1:-5992786 | MS.gene09765:intron |
| CATTCTGCACTATCAATTGC+CGG | 0.444928 | 5.1:-5993577 | MS.gene09765:CDS |
| TGGAGTTCTTGTCTAGATCC+TGG | 0.446623 | 5.1:-5994711 | MS.gene09765:CDS |
| TAAGACTCATGAAACATTGC+CGG | 0.447113 | 5.1:-5994626 | MS.gene09765:CDS |
| AACATTGGAGAAAAGGATCA+TGG | 0.456120 | 5.1:-5994840 | MS.gene09765:CDS |
| ATGTTTCAACATTGGAGAAA+AGG | 0.460245 | 5.1:-5994847 | MS.gene09765:CDS |
| ACCAACACCTCTTGAGCCTA+TGG | 0.465547 | 5.1:-5994731 | MS.gene09765:CDS |
| ACCATTTACTAATTGTCGAA+TGG | 0.480098 | 5.1:-5993701 | MS.gene09765:CDS |
| CACTTACATCAGAAGCATCA+TGG | 0.482041 | 5.1:-5993658 | MS.gene09765:CDS |
| TTCTGCTTCTGAGATTTCAA+AGG | 0.483264 | 5.1:-5994683 | MS.gene09765:CDS |
| AATCTCCCTCGCATGGAGAA+TGG | 0.495676 | 5.1:+5992944 | None:intergenic |
| AGCCTCCGCGTTGGCTTCTG+TGG | 0.496691 | 5.1:-5993551 | MS.gene09765:CDS |
| TCAATAAGTCCCTACGATAG+AGG | 0.499479 | 5.1:-5993024 | MS.gene09765:CDS |
| ATGCAAACACTTCTGTTAAG+AGG | 0.499925 | 5.1:-5993633 | MS.gene09765:CDS |
| ATAGGCTCAAGAGGTGTTGG+TGG | 0.501332 | 5.1:+5994733 | None:intergenic |
| TCCATAGGCTCAAGAGGTGT+TGG | 0.507446 | 5.1:+5994730 | None:intergenic |
| AACATCTGACACTCAGAAGC+AGG | 0.508571 | 5.1:+5992976 | None:intergenic |
| TTCTGCAATTCCTCTATCGT+AGG | 0.525943 | 5.1:+5993014 | None:intergenic |
| CATGGCCATACAGAAAAGAA+AGG | 0.529161 | 5.1:-5992438 | MS.gene09765:CDS |
| TCTGCAATTCCTCTATCGTA+GGG | 0.537594 | 5.1:+5993015 | None:intergenic |
| GATGGAATAGAATTTCTACT+TGG | 0.537636 | 5.1:-5992322 | MS.gene09765:CDS |
| ATCAAAAGCAAGCACATTGG+AGG | 0.543010 | 5.1:-5992672 | MS.gene09765:CDS |
| CTCAGAAGCAGAAAGACTCC+AGG | 0.544523 | 5.1:+5994693 | None:intergenic |
| AAAGTGGTATGTTTCAACAT+TGG | 0.544666 | 5.1:-5994855 | MS.gene09765:CDS |
| TGCCGGACTAGCCTCCGCGT+TGG | 0.550070 | 5.1:-5993560 | MS.gene09765:CDS |
| GTTGAAATGGCAGAGTTAGC+AGG | 0.552664 | 5.1:-5993454 | MS.gene09765:CDS |
| TGCAACAAATCTCCCTCGCA+TGG | 0.556607 | 5.1:+5992937 | None:intergenic |
| ACTTACATCAGAAGCATCAT+GGG | 0.561480 | 5.1:-5993657 | MS.gene09765:CDS |
| GCGGTCGATATTCAAATGCC+AGG | 0.565118 | 5.1:-5993394 | MS.gene09765:CDS |
| AAGGATCATGGCAATGGCAA+GGG | 0.568181 | 5.1:-5994828 | MS.gene09765:CDS |
| GTAAGAGTCATTAGATCACC+TGG | 0.575371 | 5.1:+5993376 | None:intergenic |
| TGTTTCATGTAAGCTTTGAG+AGG | 0.587129 | 5.1:-5993096 | MS.gene09765:intron |
| ATGGCCATACAGAAAAGAAA+GGG | 0.589553 | 5.1:-5992437 | MS.gene09765:CDS |
| GATCTAGACAAGAACTCCAT+AGG | 0.595247 | 5.1:+5994715 | None:intergenic |
| AAGAACTCCATAGGCTCAAG+AGG | 0.596767 | 5.1:+5994724 | None:intergenic |
| AAAGGATCATGGCAATGGCA+AGG | 0.597294 | 5.1:-5994829 | MS.gene09765:CDS |
| TCATTTCAGGTGCATTACGA+TGG | 0.604353 | 5.1:-5992823 | MS.gene09765:intron |
| GGAGAAAAGGATCATGGCAA+TGG | 0.608247 | 5.1:-5994834 | MS.gene09765:CDS |
| CGCTTCTACTGTTAAGTCTG+CGG | 0.608778 | 5.1:-5993413 | MS.gene09765:CDS |
| AAGATCAAAAGCAAGCACAT+TGG | 0.613502 | 5.1:-5992675 | MS.gene09765:CDS |
| GAGAACCATTCTCCATGCGA+GGG | 0.616237 | 5.1:-5992949 | MS.gene09765:CDS |
| TTTGGCCTCAAAACTGCACA+AGG | 0.625130 | 5.1:-5992394 | MS.gene09765:CDS |
| TGAGAACCATTCTCCATGCG+AGG | 0.636940 | 5.1:-5992950 | MS.gene09765:CDS |
| TGTGTAACGAAGACTCTGCA+TGG | 0.643429 | 5.1:-5992456 | MS.gene09765:CDS |
| ATCTGACACTCAGAAGCAGG+AGG | 0.692727 | 5.1:+5992979 | None:intergenic |
| ACTTAACAGTAGAAGCGACA+CGG | 0.702641 | 5.1:+5993419 | None:intergenic |
| AACCACAGAAGCCAACGCGG+AGG | 0.719869 | 5.1:+5993549 | None:intergenic |
| AGCAACCACAGAAGCCAACG+CGG | 0.728782 | 5.1:+5993546 | None:intergenic |
| TGCATTACGATGGAAACATG+TGG | 0.750334 | 5.1:-5992813 | MS.gene09765:CDS |
| ATAAGATGCTAAGAGCTGTG+TGG | 0.765894 | 5.1:+5993480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAATTCATAGATTTTT+CGG | + | chr5.1:5994856-5994875 | None:intergenic | 10.0% |
| !!! | AGAAAACAATGTTTTAAAAA+CGG | + | chr5.1:5993955-5993974 | None:intergenic | 15.0% |
| !!! | TGATTTTTACAATTACATAA+TGG | + | chr5.1:5994581-5994600 | None:intergenic | 15.0% |
| !!! | TTGTATTTATCTTAATTTTC+AGG | - | chr5.1:5994423-5994442 | MS.gene09765:intron | 15.0% |
| !! | AAGTATTTGTGAGATTATTT+AGG | + | chr5.1:5992991-5993010 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTTATCCAAAC+AGG | - | chr5.1:5993231-5993250 | MS.gene09765:intron | 20.0% |
| !! | CCTAAAAACAAAAATTTAAG+AGG | - | chr5.1:5994380-5994399 | MS.gene09765:intron | 20.0% |
| !! | TCAAATAAATCAATCCAAAT+AGG | + | chr5.1:5992601-5992620 | None:intergenic | 20.0% |
| !! | TTAAGTTATTTATCCAAACA+GGG | - | chr5.1:5993232-5993251 | MS.gene09765:intron | 20.0% |
| !! | TTTGAAGATATGAAAGAAAA+TGG | - | chr5.1:5992330-5992349 | MS.gene09765:CDS | 20.0% |
| !!! | AAAATTTAAGAGGTGAATTT+TGG | - | chr5.1:5994390-5994409 | MS.gene09765:intron | 20.0% |
| !!! | ATGCTTACATTTATTCTTTT+TGG | + | chr5.1:5994491-5994510 | None:intergenic | 20.0% |
| !!! | CCTCTTAAATTTTTGTTTTT+AGG | + | chr5.1:5994383-5994402 | None:intergenic | 20.0% |
| !!! | TAGTCTTTTGCTTAATTTTT+AGG | + | chr5.1:5993289-5993308 | None:intergenic | 20.0% |
| ! | AAGAACCATAAAGAAATTTC+TGG | + | chr5.1:5994610-5994629 | None:intergenic | 25.0% |
| ! | ATAAAGAGTAACAACATGTT+TGG | - | chr5.1:5993336-5993355 | MS.gene09765:intron | 25.0% |
| ! | ATGGATCAAAAAAATGAAAG+TGG | - | chr5.1:5992258-5992277 | MS.gene09765:CDS | 25.0% |
| ! | GTAAGTTGTAAGATTTGATA+TGG | - | chr5.1:5993981-5994000 | MS.gene09765:intron | 25.0% |
| ! | TTACATCAACAAGAAATATC+AGG | - | chr5.1:5994343-5994362 | MS.gene09765:intron | 25.0% |
| ! | TTTCTCCAGAAATTTCTTTA+TGG | - | chr5.1:5994602-5994621 | MS.gene09765:intron | 25.0% |
| !! | ACTATTTTCATAAGCTATTC+TGG | - | chr5.1:5992913-5992932 | MS.gene09765:intron | 25.0% |
| !! | TACTTAATGCATTTTAGATC+AGG | - | chr5.1:5993006-5993025 | MS.gene09765:CDS | 25.0% |
| !! | TAGTTGATGTATTTCATTTC+AGG | - | chr5.1:5994293-5994312 | MS.gene09765:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr5.1:5992811-5992830 | None:intergenic | 25.0% |
| AAACAAATTGTGACCATGTT+TGG | - | chr5.1:5992795-5992814 | MS.gene09765:CDS | 30.0% | |
| AAAGTGGTATGTTTCAACAT+TGG | - | chr5.1:5992274-5992293 | MS.gene09765:CDS | 30.0% | |
| AACTGACATTATCTATGGTT+TGG | - | chr5.1:5993882-5993901 | MS.gene09765:intron | 30.0% | |
| AATAAGCTTACCGTTAATTG+AGG | + | chr5.1:5992543-5992562 | None:intergenic | 30.0% | |
| ACCATTTACTAATTGTCGAA+TGG | - | chr5.1:5993428-5993447 | MS.gene09765:CDS | 30.0% | |
| AGCATCTTATTGTGTTGAAA+TGG | - | chr5.1:5993662-5993681 | MS.gene09765:CDS | 30.0% | |
| ATAAAGTTGAAACCCAGATA+TGG | - | chr5.1:5993309-5993328 | MS.gene09765:intron | 30.0% | |
| ATGTTTCAACATTGGAGAAA+AGG | - | chr5.1:5992282-5992301 | MS.gene09765:CDS | 30.0% | |
| ATTATTGTAGGTGTGGTTTA+TGG | - | chr5.1:5994648-5994667 | MS.gene09765:CDS | 30.0% | |
| CCATTTACTAATTGTCGAAT+GGG | - | chr5.1:5993429-5993448 | MS.gene09765:CDS | 30.0% | |
| GAGTCTAGATTGATTATTGT+AGG | - | chr5.1:5994636-5994655 | MS.gene09765:CDS | 30.0% | |
| GATGGAATAGAATTTCTACT+TGG | - | chr5.1:5994807-5994826 | MS.gene09765:CDS | 30.0% | |
| GCTTATGGACGTTTAATAAA+CGG | + | chr5.1:5992678-5992697 | None:intergenic | 30.0% | |
| TAGATTGATTATTGTAGGTG+TGG | - | chr5.1:5994641-5994660 | MS.gene09765:CDS | 30.0% | |
| TAGTGACAATCACTCTAAAT+TGG | - | chr5.1:5993608-5993627 | MS.gene09765:CDS | 30.0% | |
| TTGATATGGAACGATATTGA+TGG | - | chr5.1:5993995-5994014 | MS.gene09765:intron | 30.0% | |
| ! | AAACATGGTCACAATTTGTT+TGG | + | chr5.1:5992796-5992815 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAACAGCTTG+TGG | - | chr5.1:5992949-5992968 | MS.gene09765:CDS | 30.0% |
| ! | AATAAGTTGAAGACAGCTTA+AGG | + | chr5.1:5993074-5993093 | None:intergenic | 30.0% |
| ! | ACTCTTTATTTGTCCATATC+TGG | + | chr5.1:5993325-5993344 | None:intergenic | 30.0% |
| ! | ATAAGTTGAAGACAGCTTAA+GGG | + | chr5.1:5993073-5993092 | None:intergenic | 30.0% |
| ! | CTCTTTATTTGTCCATATCT+GGG | + | chr5.1:5993324-5993343 | None:intergenic | 30.0% |
| ! | GCATTTTTCTTTGCTTCTTT+TGG | + | chr5.1:5994084-5994103 | None:intergenic | 30.0% |
| !!! | GTTCAATTACGATTTTTTCG+TGG | - | chr5.1:5993916-5993935 | MS.gene09765:intron | 30.0% |
| AACATTGGAGAAAAGGATCA+TGG | - | chr5.1:5992289-5992308 | MS.gene09765:CDS | 35.0% | |
| AAGATCAAAAGCAAGCACAT+TGG | - | chr5.1:5994454-5994473 | MS.gene09765:intron | 35.0% | |
| AATTGTCGAATGGGTACTAT+TGG | - | chr5.1:5993438-5993457 | MS.gene09765:CDS | 35.0% | |
| AGAGTAACAACATGTTTGGT+TGG | - | chr5.1:5993340-5993359 | MS.gene09765:intron | 35.0% | |
| ATGCAAACACTTCTGTTAAG+AGG | - | chr5.1:5993496-5993515 | MS.gene09765:CDS | 35.0% | |
| ATGGCCATACAGAAAAGAAA+GGG | - | chr5.1:5994692-5994711 | MS.gene09765:CDS | 35.0% | |
| CAAACTCCACAAGCAAAAAT+GGG | - | chr5.1:5994782-5994801 | MS.gene09765:CDS | 35.0% | |
| CAATACATTTCAGGCCTATT+TGG | - | chr5.1:5992584-5992603 | MS.gene09765:intron | 35.0% | |
| CCCATTCGACAATTAGTAAA+TGG | + | chr5.1:5993432-5993451 | None:intergenic | 35.0% | |
| CTCTAAATTGGATGTTGCTA+TGG | - | chr5.1:5993620-5993639 | MS.gene09765:CDS | 35.0% | |
| CTGTGAACTGACATTATCTA+TGG | - | chr5.1:5993877-5993896 | MS.gene09765:intron | 35.0% | |
| GAATGGGTACTATTGGAAAA+TGG | - | chr5.1:5993445-5993464 | MS.gene09765:CDS | 35.0% | |
| GCTGTTCTTATAAACTATCC+TGG | + | chr5.1:5993109-5993128 | None:intergenic | 35.0% | |
| GTTGACTAGCAATACATTTC+AGG | - | chr5.1:5992575-5992594 | MS.gene09765:intron | 35.0% | |
| TAAGACTCATGAAACATTGC+CGG | - | chr5.1:5992503-5992522 | MS.gene09765:intron | 35.0% | |
| TACTCGCATAAGTATTTGTG+AGG | - | chr5.1:5992628-5992647 | MS.gene09765:intron | 35.0% | |
| ! | ATGGAACGATATTGATGGTT+TGG | - | chr5.1:5994000-5994019 | MS.gene09765:intron | 35.0% |
| !! | ACTTACATCAGAAGCATCAT+GGG | - | chr5.1:5993472-5993491 | MS.gene09765:CDS | 35.0% |
| !! | CTTATTTTCATAAGCTCTCC+AGG | - | chr5.1:5993088-5993107 | MS.gene09765:intron | 35.0% |
| !! | GCTTCTGAAGATCTCTATTT+TGG | - | chr5.1:5994717-5994736 | MS.gene09765:CDS | 35.0% |
| !! | TGTTTCATGTAAGCTTTGAG+AGG | - | chr5.1:5994033-5994052 | MS.gene09765:intron | 35.0% |
| !! | TTCTGCTTCTGAGATTTCAA+AGG | - | chr5.1:5992446-5992465 | MS.gene09765:CDS | 35.0% |
| !!! | TTTTTTCGTGGTTCAATGTC+TGG | - | chr5.1:5993928-5993947 | MS.gene09765:intron | 35.0% |
| AACTGAACCAGACAGTTCAA+CGG | - | chr5.1:5993842-5993861 | MS.gene09765:intron | 40.0% | |
| ACTTAACAGTAGAAGCGACA+CGG | + | chr5.1:5993713-5993732 | None:intergenic | 40.0% | |
| ATAAGATGCTAAGAGCTGTG+TGG | + | chr5.1:5993652-5993671 | None:intergenic | 40.0% | |
| ATCAAAAGCAAGCACATTGG+AGG | - | chr5.1:5994457-5994476 | MS.gene09765:intron | 40.0% | |
| CATGGCCATACAGAAAAGAA+AGG | - | chr5.1:5994691-5994710 | MS.gene09765:CDS | 40.0% | |
| CATTCTGCACTATCAATTGC+CGG | - | chr5.1:5993552-5993571 | MS.gene09765:CDS | 40.0% | |
| GATCTAGACAAGAACTCCAT+AGG | + | chr5.1:5992417-5992436 | None:intergenic | 40.0% | |
| GATTTCTGCGCCTCAATTAA+CGG | - | chr5.1:5992530-5992549 | MS.gene09765:intron | 40.0% | |
| GCAAACTCCACAAGCAAAAA+TGG | - | chr5.1:5994781-5994800 | MS.gene09765:CDS | 40.0% | |
| GTAAATGGTATGAGCTTTCC+AGG | + | chr5.1:5993417-5993436 | None:intergenic | 40.0% | |
| GTAAGAGTCATTAGATCACC+TGG | + | chr5.1:5993756-5993775 | None:intergenic | 40.0% | |
| TAAACGTCCATAAGCTCTCA+GGG | - | chr5.1:5992683-5992702 | MS.gene09765:CDS | 40.0% | |
| TCAATAAGTCCCTACGATAG+AGG | - | chr5.1:5994105-5994124 | MS.gene09765:intron | 40.0% | |
| TCTGCAATTCCTCTATCGTA+GGG | + | chr5.1:5994117-5994136 | None:intergenic | 40.0% | |
| TGCATTACGATGGAAACATG+TGG | - | chr5.1:5994316-5994335 | MS.gene09765:intron | 40.0% | |
| TTAAACGTCCATAAGCTCTC+AGG | - | chr5.1:5992682-5992701 | MS.gene09765:CDS | 40.0% | |
| TTCCCATATACTCTTCCAGA+CGG | + | chr5.1:5992655-5992674 | None:intergenic | 40.0% | |
| TTCTGCAATTCCTCTATCGT+AGG | + | chr5.1:5994118-5994137 | None:intergenic | 40.0% | |
| TTGTTGCAGGTTACGGAAAA+AGG | - | chr5.1:5994207-5994226 | MS.gene09765:intron | 40.0% | |
| ! | CTAATGCTATTTGCCCTGTT+TGG | + | chr5.1:5993248-5993267 | None:intergenic | 40.0% |
| ! | CTATGGTTTGGCTATTTGAG+TGG | - | chr5.1:5993894-5993913 | MS.gene09765:intron | 40.0% |
| ! | GCTTCCCTTTCTTTTCTGTA+TGG | + | chr5.1:5994699-5994718 | None:intergenic | 40.0% |
| ! | TCATTTCAGGTGCATTACGA+TGG | - | chr5.1:5994306-5994325 | MS.gene09765:intron | 40.0% |
| !! | CACAAGCAAAAATGGGTTGA+TGG | - | chr5.1:5994789-5994808 | MS.gene09765:CDS | 40.0% |
| !! | CACTTACATCAGAAGCATCA+TGG | - | chr5.1:5993471-5993490 | MS.gene09765:CDS | 40.0% |
| !! | CATCAACCCATTTTTGCTTG+TGG | + | chr5.1:5994791-5994810 | None:intergenic | 40.0% |
| AAAGGATCATGGCAATGGCA+AGG | - | chr5.1:5992300-5992319 | MS.gene09765:CDS | 45.0% | |
| AACATCTGACACTCAGAAGC+AGG | + | chr5.1:5994156-5994175 | None:intergenic | 45.0% | |
| AAGAACTCCATAGGCTCAAG+AGG | + | chr5.1:5992408-5992427 | None:intergenic | 45.0% | |
| AAGGATCATGGCAATGGCAA+GGG | - | chr5.1:5992301-5992320 | MS.gene09765:CDS | 45.0% | |
| AAGTATTTGTGAGGTCCGTC+TGG | - | chr5.1:5992637-5992656 | MS.gene09765:intron | 45.0% | |
| AAGTTGTCCCTGAGAGCTTA+TGG | + | chr5.1:5992693-5992712 | None:intergenic | 45.0% | |
| CGCTTCTACTGTTAAGTCTG+CGG | - | chr5.1:5993716-5993735 | MS.gene09765:CDS | 45.0% | |
| GGAGAAAAGGATCATGGCAA+TGG | - | chr5.1:5992295-5992314 | MS.gene09765:CDS | 45.0% | |
| GTTGAAATGGCAGAGTTAGC+AGG | - | chr5.1:5993675-5993694 | MS.gene09765:CDS | 45.0% | |
| TGGAGTTCTTGTCTAGATCC+TGG | - | chr5.1:5992418-5992437 | MS.gene09765:CDS | 45.0% | |
| TGTGTAACGAAGACTCTGCA+TGG | - | chr5.1:5994673-5994692 | MS.gene09765:CDS | 45.0% | |
| TTTGGCCTCAAAACTGCACA+AGG | - | chr5.1:5994735-5994754 | MS.gene09765:CDS | 45.0% | |
| ! | GAAGACCTTGTGCAGTTTTG+AGG | + | chr5.1:5994743-5994762 | None:intergenic | 45.0% |
| ! | GTCCGTCTGGAAGAGTATAT+GGG | - | chr5.1:5992650-5992669 | MS.gene09765:CDS | 45.0% |
| ! | TGTGTTCATCTTTTGCAGCC+TGG | - | chr5.1:5993396-5993415 | MS.gene09765:CDS | 45.0% |
| !! | GGGAGATTTGTTGCAGGTTA+CGG | - | chr5.1:5994200-5994219 | MS.gene09765:intron | 45.0% |
| AATCTCCCTCGCATGGAGAA+TGG | + | chr5.1:5994188-5994207 | None:intergenic | 50.0% | |
| ACCAACACCTCTTGAGCCTA+TGG | - | chr5.1:5992398-5992417 | MS.gene09765:CDS | 50.0% | |
| ATCTGACACTCAGAAGCAGG+AGG | + | chr5.1:5994153-5994172 | None:intergenic | 50.0% | |
| CGTTCAACCGTTGAACTGTC+TGG | + | chr5.1:5993852-5993871 | None:intergenic | 50.0% | |
| CTCAGAAGCAGAAAGACTCC+AGG | + | chr5.1:5992439-5992458 | None:intergenic | 50.0% | |
| GAGAACCATTCTCCATGCGA+GGG | - | chr5.1:5994180-5994199 | MS.gene09765:intron | 50.0% | |
| GCGGTCGATATTCAAATGCC+AGG | - | chr5.1:5993735-5993754 | MS.gene09765:intron | 50.0% | |
| TGAGAACCATTCTCCATGCG+AGG | - | chr5.1:5994179-5994198 | MS.gene09765:intron | 50.0% | |
| TGAGGCGCAGAAATCACTTC+CGG | + | chr5.1:5992525-5992544 | None:intergenic | 50.0% | |
| TGCAACAAATCTCCCTCGCA+TGG | + | chr5.1:5994195-5994214 | None:intergenic | 50.0% | |
| ! | GGTCCGTCTGGAAGAGTATA+TGG | - | chr5.1:5992649-5992668 | MS.gene09765:CDS | 50.0% |
| ! | TCCATAGGCTCAAGAGGTGT+TGG | + | chr5.1:5992402-5992421 | None:intergenic | 50.0% |
| !! | ATAGGCTCAAGAGGTGTTGG+TGG | + | chr5.1:5992399-5992418 | None:intergenic | 50.0% |
| !! | ATGCGAGGGAGATTTGTTGC+AGG | - | chr5.1:5994194-5994213 | MS.gene09765:intron | 50.0% |
| !! | GTTGGTGGCTCAGGAATTTC+TGG | + | chr5.1:5992384-5992403 | None:intergenic | 50.0% |
| AGCAACCACAGAAGCCAACG+CGG | + | chr5.1:5993586-5993605 | None:intergenic | 55.0% | |
| CTTACTGCTGCAGCTGCAAC+AGG | - | chr5.1:5993771-5993790 | MS.gene09765:intron | 55.0% | |
| !! | TCAAGAGGTGTTGGTGGCTC+AGG | + | chr5.1:5992393-5992412 | None:intergenic | 55.0% |
| AACCACAGAAGCCAACGCGG+AGG | + | chr5.1:5993583-5993602 | None:intergenic | 60.0% | |
| ! | AGCCAACGCGGAGGCTAGTC+CGG | + | chr5.1:5993574-5993593 | None:intergenic | 65.0% |
| !! | AGCCTCCGCGTTGGCTTCTG+TGG | - | chr5.1:5993578-5993597 | MS.gene09765:CDS | 65.0% |
| !! | TGCCGGACTAGCCTCCGCGT+TGG | - | chr5.1:5993569-5993588 | MS.gene09765:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5992255 | 5994896 | 5992255 | ID=MS.gene09765 |
| chr5.1 | mRNA | 5992255 | 5994896 | 5992255 | ID=MS.gene09765.t1;Parent=MS.gene09765 |
| chr5.1 | exon | 5994624 | 5994896 | 5994624 | ID=MS.gene09765.t1.exon1;Parent=MS.gene09765.t1 |
| chr5.1 | CDS | 5994624 | 5994896 | 5994624 | ID=cds.MS.gene09765.t1;Parent=MS.gene09765.t1 |
| chr5.1 | exon | 5993359 | 5993737 | 5993359 | ID=MS.gene09765.t1.exon2;Parent=MS.gene09765.t1 |
| chr5.1 | CDS | 5993359 | 5993737 | 5993359 | ID=cds.MS.gene09765.t1;Parent=MS.gene09765.t1 |
| chr5.1 | exon | 5992923 | 5993105 | 5992923 | ID=MS.gene09765.t1.exon3;Parent=MS.gene09765.t1 |
| chr5.1 | CDS | 5992923 | 5993105 | 5992923 | ID=cds.MS.gene09765.t1;Parent=MS.gene09765.t1 |
| chr5.1 | exon | 5992787 | 5992836 | 5992787 | ID=MS.gene09765.t1.exon4;Parent=MS.gene09765.t1 |
| chr5.1 | CDS | 5992787 | 5992836 | 5992787 | ID=cds.MS.gene09765.t1;Parent=MS.gene09765.t1 |
| chr5.1 | exon | 5992649 | 5992706 | 5992649 | ID=MS.gene09765.t1.exon5;Parent=MS.gene09765.t1 |
| chr5.1 | CDS | 5992649 | 5992706 | 5992649 | ID=cds.MS.gene09765.t1;Parent=MS.gene09765.t1 |
| chr5.1 | exon | 5992255 | 5992493 | 5992255 | ID=MS.gene09765.t1.exon6;Parent=MS.gene09765.t1 |
| chr5.1 | CDS | 5992255 | 5992493 | 5992255 | ID=cds.MS.gene09765.t1;Parent=MS.gene09765.t1 |
| Gene Sequence |
| Protein sequence |
