Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20146.t1 | XP_003630669.1 | 97.6 | 548 | 13 | 0 | 14 | 561 | 4 | 551 | 1.40E-294 | 1021.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20146.t1 | Q9SW96 | 71.2 | 549 | 156 | 1 | 15 | 561 | 24 | 572 | 1.6e-233 | 810.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20146.t1 | G7LJN2 | 97.6 | 548 | 13 | 0 | 14 | 561 | 4 | 551 | 1.0e-294 | 1021.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20146 | MS.gene67840 | PPI |
| MS.gene070509 | MS.gene20146 | PPI |
| MS.gene81620 | MS.gene20146 | PPI |
| MS.gene070505 | MS.gene20146 | PPI |
| MS.gene057886 | MS.gene20146 | PPI |
| MS.gene20146 | MS.gene81617 | PPI |
| MS.gene81615 | MS.gene20146 | PPI |
| MS.gene20146 | MS.gene070503 | PPI |
| MS.gene20146 | MS.gene070507 | PPI |
| MS.gene016743 | MS.gene20146 | PPI |
| MS.gene20146 | MS.gene057883 | PPI |
| MS.gene20146 | MS.gene016758 | PPI |
| MS.gene20146 | MS.gene070492 | PPI |
| MS.gene016742 | MS.gene20146 | PPI |
| MS.gene20146 | MS.gene070511 | PPI |
| MS.gene070510 | MS.gene20146 | PPI |
| MS.gene81622 | MS.gene20146 | PPI |
| MS.gene20146 | MS.gene057884 | PPI |
| MS.gene37911 | MS.gene20146 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20146.t1 | MTR_8g102050 | 97.993 | 548 | 11 | 0 | 14 | 561 | 4 | 551 | 0.0 | 1114 |
| MS.gene20146.t1 | MTR_7g101050 | 88.774 | 579 | 44 | 7 | 1 | 561 | 1 | 576 | 0.0 | 1028 |
| MS.gene20146.t1 | MTR_8g011530 | 46.369 | 537 | 280 | 5 | 25 | 560 | 103 | 632 | 1.72e-169 | 495 |
| MS.gene20146.t1 | MTR_4g100920 | 48.502 | 534 | 202 | 9 | 33 | 561 | 81 | 546 | 3.52e-167 | 486 |
| MS.gene20146.t1 | MTR_4g100920 | 61.453 | 179 | 65 | 2 | 279 | 456 | 266 | 441 | 6.41e-69 | 229 |
| MS.gene20146.t1 | MTR_4g100920 | 47.159 | 176 | 85 | 4 | 33 | 204 | 81 | 252 | 5.28e-43 | 160 |
| MS.gene20146.t1 | MTR_1g014140 | 30.605 | 281 | 175 | 8 | 285 | 558 | 271 | 538 | 1.20e-27 | 117 |
| MS.gene20146.t1 | MTR_5g028360 | 30.605 | 281 | 175 | 9 | 285 | 558 | 319 | 586 | 1.87e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20146.t1 | AT5G56680 | 73.866 | 551 | 142 | 1 | 13 | 561 | 22 | 572 | 0.0 | 879 |
| MS.gene20146.t1 | AT1G70980 | 72.152 | 553 | 147 | 4 | 13 | 561 | 22 | 571 | 0.0 | 842 |
| MS.gene20146.t1 | AT4G17300 | 46.995 | 549 | 219 | 9 | 18 | 561 | 86 | 567 | 7.05e-167 | 486 |
| MS.gene20146.t1 | AT4G17300 | 46.995 | 549 | 219 | 9 | 18 | 561 | 106 | 587 | 8.68e-167 | 486 |
| MS.gene20146.t1 | AT3G07420 | 47.628 | 506 | 251 | 7 | 61 | 560 | 140 | 637 | 1.12e-165 | 485 |
| MS.gene20146.t1 | AT3G07420 | 44.935 | 385 | 198 | 7 | 61 | 439 | 140 | 516 | 5.41e-109 | 337 |
| MS.gene20146.t1 | AT4G31180 | 31.317 | 281 | 173 | 8 | 285 | 558 | 288 | 555 | 2.37e-28 | 119 |
| MS.gene20146.t1 | AT4G31180 | 31.317 | 281 | 173 | 8 | 285 | 558 | 288 | 555 | 2.37e-28 | 119 |
| MS.gene20146.t1 | AT1G68420 | 63.636 | 77 | 28 | 0 | 315 | 391 | 1 | 77 | 5.22e-28 | 107 |
| MS.gene20146.t1 | AT4G26870 | 29.242 | 277 | 176 | 9 | 285 | 554 | 262 | 525 | 3.38e-26 | 112 |
| MS.gene20146.t1 | AT5G38750 | 35.570 | 149 | 51 | 5 | 26 | 169 | 19 | 127 | 2.27e-15 | 73.6 |
Find 140 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAGGATATGGAATTTA+TGG | 0.136941 | 4.4:-3741293 | MS.gene20146:CDS |
| CCAGGCATTTGGCTGAATTT+TGG | 0.190908 | 4.4:-3741668 | MS.gene20146:CDS |
| TAGAATGCTTTGATTTCTTT+TGG | 0.211540 | 4.4:+3740848 | None:intergenic |
| TTTCAGGTTGGAGAGTTAAT+TGG | 0.238466 | 4.4:-3740499 | MS.gene20146:intron |
| AATTTGAGAAAGAAGTAAAA+TGG | 0.264571 | 4.4:-3741150 | MS.gene20146:CDS |
| CCTCGGTTACGGTGGATAAT+TGG | 0.276758 | 4.4:+3743068 | None:intergenic |
| AGCTGCTAAGCTTGTTGTTC+AGG | 0.277489 | 4.4:-3741985 | MS.gene20146:CDS |
| TGACAACTGCCTTGAGGATA+TGG | 0.287783 | 4.4:-3741302 | MS.gene20146:CDS |
| GAAGCTTACCGTGTTGGTTC+TGG | 0.296078 | 4.4:+3742637 | None:intergenic |
| TTCAGGTTGGAGAGTTAATT+GGG | 0.300812 | 4.4:-3740498 | MS.gene20146:intron |
| CATCTCAAACTTCCTCCTTC+TGG | 0.307642 | 4.4:-3742788 | MS.gene20146:CDS |
| TTGCATTGATCGTTTGAAAA+TGG | 0.308329 | 4.4:-3741251 | MS.gene20146:CDS |
| TTCTCACACTTCCAGGCATT+TGG | 0.323004 | 4.4:-3741679 | MS.gene20146:CDS |
| GACGCTTCGCTTGCTGATCT+TGG | 0.338136 | 4.4:-3742851 | MS.gene20146:CDS |
| AAGTCTGCAAACGCAATTTC+AGG | 0.340094 | 4.4:+3741636 | None:intergenic |
| GATCGAGCTTCGCGCTGAAC+AGG | 0.346443 | 4.4:-3742753 | MS.gene20146:CDS |
| CCATAGCAGCCACTGTCTTT+AGG | 0.350322 | 4.4:+3740807 | None:intergenic |
| ATGTTACAGACTAGAGGATA+TGG | 0.353962 | 4.4:-3740303 | MS.gene20146:intron |
| CAGAGAATTCTCACACTTCC+AGG | 0.362661 | 4.4:-3741686 | MS.gene20146:CDS |
| TGAAATTGCGTTTGCAGACT+TGG | 0.364314 | 4.4:-3741634 | MS.gene20146:CDS |
| ATGGCCGACAAGTTTGATAA+AGG | 0.367425 | 4.4:-3741274 | MS.gene20146:CDS |
| TACAGAAGCTGTGGAAATAC+TGG | 0.367791 | 4.4:-3741197 | MS.gene20146:CDS |
| TCTGATACTTTACCTCTGTT+AGG | 0.368663 | 4.4:+3740894 | None:intergenic |
| ATTTGAGAAAGAAGTAAAAT+GGG | 0.373720 | 4.4:-3741149 | MS.gene20146:CDS |
| AAAGGCGAAAGCGTCCTTAT+CGG | 0.375770 | 4.4:+3742922 | None:intergenic |
| GACGATAACTTGAAGGTTAC+CGG | 0.386145 | 4.4:+3742874 | None:intergenic |
| TACCATTCATATGGCTCAAC+AGG | 0.392016 | 4.4:+3740275 | None:intergenic |
| CTTAGTCGCGTGTATACATT+TGG | 0.394717 | 4.4:-3741723 | MS.gene20146:CDS |
| GGATATTTAGCAGGATCAAC+AGG | 0.402646 | 4.4:+3742716 | None:intergenic |
| CGCCGTGAAGACGGTGGATC+AGG | 0.410765 | 4.4:-3742998 | MS.gene20146:CDS |
| TCCGTCCTTTCGAGGAATAC+CGG | 0.412212 | 4.4:+3741833 | None:intergenic |
| TTCAAAGCCAAGACCGAATC+CGG | 0.420519 | 4.4:+3740217 | None:intergenic |
| CAAGGATTCAAGAGTGAGTC+TGG | 0.425712 | 4.4:+3742682 | None:intergenic |
| TCCGTCGTTCAATTCCAAAA+AGG | 0.425770 | 4.4:+3742904 | None:intergenic |
| GCTGTCGGAGAATTCAGCTT+TGG | 0.429447 | 4.4:+3743042 | None:intergenic |
| TATCTGCTGTTGCTCGGATT+CGG | 0.429555 | 4.4:-3742199 | MS.gene20146:CDS |
| CATCATAACGCTCCTCCCTT+TGG | 0.431653 | 4.4:+3740470 | None:intergenic |
| AAACATGCCGGATTCGGTCT+TGG | 0.433671 | 4.4:-3740224 | MS.gene20146:CDS |
| TCCACCTTTCCGTCCTTTCG+AGG | 0.434861 | 4.4:+3741825 | None:intergenic |
| CTGTCGGAGAATTCAGCTTT+GGG | 0.435015 | 4.4:+3743043 | None:intergenic |
| ACAGTGAAACATGCCGGATT+CGG | 0.441656 | 4.4:-3740230 | MS.gene20146:CDS |
| CAATCACTAGTGGTGACAAT+TGG | 0.443292 | 4.4:+3742113 | None:intergenic |
| AGCTTTGGGAACCTCGGTTA+CGG | 0.446521 | 4.4:+3743057 | None:intergenic |
| CCAAAATTCAGCCAAATGCC+TGG | 0.449352 | 4.4:+3741668 | None:intergenic |
| CCTAAAGACAGTGGCTGCTA+TGG | 0.464078 | 4.4:-3740807 | MS.gene20146:CDS |
| GCAACCTTTATCAAACTTGT+CGG | 0.464855 | 4.4:+3741270 | None:intergenic |
| TCACTGTTCCATACCGCCTC+AGG | 0.466762 | 4.4:+3740246 | None:intergenic |
| GATTCGGTCTTGGCTTTGAA+AGG | 0.469967 | 4.4:-3740214 | MS.gene20146:CDS |
| CCGTCCTTTCGAGGAATACC+GGG | 0.472290 | 4.4:+3741834 | None:intergenic |
| CAGGCAAGAAAGCAAGAATC+GGG | 0.476509 | 4.4:-3742970 | MS.gene20146:CDS |
| GACGGTGGATCAGGTTTAGC+AGG | 0.479001 | 4.4:-3742989 | MS.gene20146:CDS |
| TGTAGATCTTTCCACCAGCT+TGG | 0.481572 | 4.4:+3741863 | None:intergenic |
| ATTCCCTTCCCACGATATCC+TGG | 0.485303 | 4.4:-3740149 | MS.gene20146:CDS |
| AGGTCAATGTACCATTCATA+TGG | 0.485564 | 4.4:+3740266 | None:intergenic |
| AACCGGAAGAAAAGCCGATA+AGG | 0.487481 | 4.4:-3742936 | MS.gene20146:CDS |
| TGTATATGTAAGTCGAATGA+AGG | 0.488290 | 4.4:+3741216 | None:intergenic |
| GTTCAGTGAAGCAGAGAGGT+TGG | 0.488710 | 4.4:-3742054 | MS.gene20146:CDS |
| TTAGGCAAAGGATATTTAGC+AGG | 0.489337 | 4.4:+3742707 | None:intergenic |
| TCAACATCAGCTTCAGTTGG+AGG | 0.491857 | 4.4:+3742008 | None:intergenic |
| ACCGTCTTCACGGCGGATGA+TGG | 0.493513 | 4.4:+3743006 | None:intergenic |
| AAGCTTGTTGTTCAGGAGAA+GGG | 0.495167 | 4.4:-3741978 | MS.gene20146:CDS |
| GCTGAACAGGTTCTTCATGT+TGG | 0.497814 | 4.4:-3742740 | MS.gene20146:CDS |
| GGAACTTGTGTTGTTGTTGA+GGG | 0.498325 | 4.4:-3742812 | MS.gene20146:CDS |
| GGCGGATGATGGATTTGATC+AGG | 0.500013 | 4.4:+3743017 | None:intergenic |
| TGCAGATATCTGCTGTTGCT+CGG | 0.500801 | 4.4:-3742205 | MS.gene20146:intron |
| AACCTGATCCACCGTCTTCA+CGG | 0.501577 | 4.4:+3742996 | None:intergenic |
| TACATTGACCTGAGGCGGTA+TGG | 0.502024 | 4.4:-3740254 | MS.gene20146:CDS |
| AATTCTCTGCACGAAATGTC+GGG | 0.502631 | 4.4:+3741700 | None:intergenic |
| AATCATAAATCTGCTCTGCC+AGG | 0.503281 | 4.4:+3740131 | None:intergenic |
| GGATAATTATAGACTATGAC+AGG | 0.507099 | 4.4:+3740869 | None:intergenic |
| ATCTGCAAAAGCAGATAAGA+AGG | 0.510339 | 4.4:-3741934 | MS.gene20146:CDS |
| CTTGGACAACTTGTTCAGAC+TGG | 0.510383 | 4.4:-3742833 | MS.gene20146:CDS |
| GCAGGCAAGAAAGCAAGAAT+CGG | 0.515281 | 4.4:-3742971 | MS.gene20146:CDS |
| ATCTTCTGTTTCGCTCCAGA+AGG | 0.521124 | 4.4:+3742773 | None:intergenic |
| GCTTCAACATCAGCTTCAGT+TGG | 0.525178 | 4.4:+3742005 | None:intergenic |
| AAGCGTCGACGATAACTTGA+AGG | 0.525722 | 4.4:+3742867 | None:intergenic |
| AATTGCGTTTGCAGACTTGG+AGG | 0.525936 | 4.4:-3741631 | MS.gene20146:intron |
| TAAGCTTGTTGTTCAGGAGA+AGG | 0.533592 | 4.4:-3741979 | MS.gene20146:CDS |
| TTGAACGACGGAAGCTGCGC+CGG | 0.541271 | 4.4:-3742893 | MS.gene20146:CDS |
| GAATTCTCTGCACGAAATGT+CGG | 0.541676 | 4.4:+3741699 | None:intergenic |
| TCCATCATCCGCCGTGAAGA+CGG | 0.541877 | 4.4:-3743007 | MS.gene20146:CDS |
| CCGTGTTGGTTCTGGAACGA+AGG | 0.558261 | 4.4:+3742645 | None:intergenic |
| AGCTTGTTGTTCAGGAGAAG+GGG | 0.558894 | 4.4:-3741977 | MS.gene20146:CDS |
| TCTGCTCTGCCAGGATATCG+TGG | 0.559764 | 4.4:+3740140 | None:intergenic |
| TGGATAATTGGCCGGATGAG+AGG | 0.561575 | 4.4:+3743080 | None:intergenic |
| ACAATGTCAGACCTCTCATC+CGG | 0.561641 | 4.4:-3743091 | MS.gene20146:CDS |
| AAAAGAAAATGTATCCAAGC+TGG | 0.561643 | 4.4:-3741877 | MS.gene20146:CDS |
| TTCTGTTTCGCTCCAGAAGG+AGG | 0.561830 | 4.4:+3742776 | None:intergenic |
| TGAAGCAGAGAGGTTGGAGA+AGG | 0.562538 | 4.4:-3742048 | MS.gene20146:CDS |
| GAATTCAGCTTTGGGAACCT+CGG | 0.563789 | 4.4:+3743051 | None:intergenic |
| CCCGGTATTCCTCGAAAGGA+CGG | 0.564925 | 4.4:-3741834 | MS.gene20146:CDS |
| TCAGGTTGGAGAGTTAATTG+GGG | 0.567841 | 4.4:-3740497 | MS.gene20146:intron |
| TGGAACTTGTGTTGTTGTTG+AGG | 0.575683 | 4.4:-3742813 | MS.gene20146:CDS |
| ATTTAGCTTCTGAGCATGAA+AGG | 0.578456 | 4.4:-3741120 | MS.gene20146:intron |
| ACTAGTGATTGTGAGGGTGC+TGG | 0.579234 | 4.4:-3742101 | MS.gene20146:CDS |
| GTATATGTAAGTCGAATGAA+GGG | 0.579832 | 4.4:+3741217 | None:intergenic |
| ACATCAGCTTCAGTTGGAGG+CGG | 0.581956 | 4.4:+3742011 | None:intergenic |
| GGATTTGATCAGGACGCTGT+CGG | 0.584016 | 4.4:+3743027 | None:intergenic |
| CTGCCAGGATATCGTGGGAA+GGG | 0.584465 | 4.4:+3740146 | None:intergenic |
| AGAAAATGTATCCAAGCTGG+TGG | 0.588613 | 4.4:-3741874 | MS.gene20146:CDS |
| CTGGAAGAATCTGTGACGAA+TGG | 0.592469 | 4.4:-3741178 | MS.gene20146:CDS |
| TCCTCGAAAGGACGGAAAGG+TGG | 0.597542 | 4.4:-3741826 | MS.gene20146:CDS |
| GGTTACGGTGGATAATTGGC+CGG | 0.603196 | 4.4:+3743072 | None:intergenic |
| TATGGATGTTCTTGTGCCAA+AGG | 0.605646 | 4.4:-3740789 | MS.gene20146:intron |
| GAAGGAGATTAGTGCTGCTG+TGG | 0.610064 | 4.4:-3741916 | MS.gene20146:CDS |
| TCAGCCCGGTATTCCTCGAA+AGG | 0.611373 | 4.4:-3741838 | MS.gene20146:CDS |
| TATGGAACAGTGAAACATGC+CGG | 0.617944 | 4.4:-3740236 | MS.gene20146:CDS |
| GAAAGATCTACACTTCAGCC+CGG | 0.620865 | 4.4:-3741852 | MS.gene20146:CDS |
| CCATAAATTCCATATCCTCA+AGG | 0.622708 | 4.4:+3741293 | None:intergenic |
| TTTGAGAAAGAAGTAAAATG+GGG | 0.624348 | 4.4:-3741148 | MS.gene20146:CDS |
| CTGCTCTGCCAGGATATCGT+GGG | 0.624533 | 4.4:+3740141 | None:intergenic |
| CTTTGTTCAGTGAAGCAGAG+AGG | 0.632800 | 4.4:-3742058 | MS.gene20146:CDS |
| GTTATAATGTTACAGACTAG+AGG | 0.632976 | 4.4:-3740309 | MS.gene20146:intron |
| GGCAAGAAAGCAAGAATCGG+GGG | 0.633348 | 4.4:-3742968 | MS.gene20146:CDS |
| CAGGTTGGAGAGTTAATTGG+GGG | 0.635147 | 4.4:-3740496 | MS.gene20146:CDS |
| CCTTCGTTCCAGAACCAACA+CGG | 0.635811 | 4.4:-3742645 | MS.gene20146:intron |
| GCTTGTTGTTCAGGAGAAGG+GGG | 0.639836 | 4.4:-3741976 | MS.gene20146:CDS |
| TCTGCCAGGATATCGTGGGA+AGG | 0.640927 | 4.4:+3740145 | None:intergenic |
| GTTACTTGACAACTGCCTTG+AGG | 0.641332 | 4.4:-3741308 | MS.gene20146:CDS |
| CTGTCTTTAGGTCATCATTG+AGG | 0.642743 | 4.4:+3740819 | None:intergenic |
| CCAATTATCCACCGTAACCG+AGG | 0.644381 | 4.4:-3743068 | MS.gene20146:CDS |
| AATGGTACATTGACCTGAGG+CGG | 0.645218 | 4.4:-3740259 | MS.gene20146:CDS |
| ATCATCCGCCGTGAAGACGG+TGG | 0.650336 | 4.4:-3743004 | MS.gene20146:CDS |
| ACTTACATATACAGAAGCTG+TGG | 0.652239 | 4.4:-3741206 | MS.gene20146:CDS |
| TATTCCTCGAAAGGACGGAA+AGG | 0.658806 | 4.4:-3741829 | MS.gene20146:CDS |
| TGCCTGTTGAGCCATATGAA+TGG | 0.659840 | 4.4:-3740277 | MS.gene20146:CDS |
| TTTGGGAACCTCGGTTACGG+TGG | 0.663451 | 4.4:+3743060 | None:intergenic |
| GTTATGATGTCATTCAACAA+AGG | 0.665614 | 4.4:-3740456 | MS.gene20146:intron |
| AGCACCCTCACAATCACTAG+TGG | 0.672495 | 4.4:+3742103 | None:intergenic |
| AAGGTGAACGAAATCACGCA+AGG | 0.674910 | 4.4:+3742664 | None:intergenic |
| TGTCACCACTAGTGATTGTG+AGG | 0.675390 | 4.4:-3742108 | MS.gene20146:CDS |
| ATGAATGGTACATTGACCTG+AGG | 0.689555 | 4.4:-3740262 | MS.gene20146:CDS |
| AGGCAAGAAAGCAAGAATCG+GGG | 0.689745 | 4.4:-3742969 | MS.gene20146:CDS |
| CAATGATGACCTAAAGACAG+TGG | 0.699761 | 4.4:-3740816 | MS.gene20146:CDS |
| ATATGTAAGTCGAATGAAGG+GGG | 0.701471 | 4.4:+3741219 | None:intergenic |
| TATATGTAAGTCGAATGAAG+GGG | 0.702544 | 4.4:+3741218 | None:intergenic |
| GGATGATATGAAGTGCGCCG+AGG | 0.712177 | 4.4:-3741356 | MS.gene20146:CDS |
| TGCATGCAGATACCTAACAG+AGG | 0.748820 | 4.4:-3740906 | MS.gene20146:intron |
| GTCACCACTAGTGATTGTGA+GGG | 0.751157 | 4.4:-3742107 | MS.gene20146:CDS |
| CTGATCCACCGTCTTCACGG+CGG | 0.757372 | 4.4:+3742999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATATAAAAAGTTAAATT+CGG | - | chr4.4:3740853-3740872 | MS.gene20146:CDS | 10.0% |
| !! | TAATTACAATAATTCTTATT+CGG | - | chr4.4:3740889-3740908 | MS.gene20146:CDS | 10.0% |
| !!! | TTATAATTTCGTTAATTTTA+GGG | - | chr4.4:3740764-3740783 | MS.gene20146:intron | 10.0% |
| !!! | TTTATAATTTCGTTAATTTT+AGG | - | chr4.4:3740763-3740782 | MS.gene20146:intron | 10.0% |
| !! | CATATTAAAACAAAATATAC+AGG | + | chr4.4:3742465-3742484 | None:intergenic | 15.0% |
| !! | TTATAAAATAATCCCTAAAT+TGG | + | chr4.4:3740750-3740769 | None:intergenic | 15.0% |
| !!! | AATTCAAATACTGTTTTTTA+GGG | - | chr4.4:3741730-3741749 | MS.gene20146:CDS | 15.0% |
| !!! | ATTTTGTTTTAATATGTCTA+TGG | - | chr4.4:3742469-3742488 | MS.gene20146:intron | 15.0% |
| !!! | TTTTTATGCATGTTATTATT+GGG | - | chr4.4:3740991-3741010 | MS.gene20146:intron | 15.0% |
| !!! | TTTTTTATGCATGTTATTAT+TGG | - | chr4.4:3740990-3741009 | MS.gene20146:intron | 15.0% |
| !! | AAATATTTGCATTATTGTGT+AGG | - | chr4.4:3741844-3741863 | MS.gene20146:CDS | 20.0% |
| !! | AACTACATATCAAACTATTA+AGG | - | chr4.4:3742572-3742591 | MS.gene20146:intron | 20.0% |
| !! | AATAATTCTTATTCGGAATT+GGG | - | chr4.4:3740896-3740915 | MS.gene20146:CDS | 20.0% |
| !! | AATTTGAGAAAGAAGTAAAA+TGG | - | chr4.4:3742071-3742090 | MS.gene20146:CDS | 20.0% |
| !! | AGAATTATTGTAATTACCAA+AGG | + | chr4.4:3740885-3740904 | None:intergenic | 20.0% |
| !! | ATTTGAGAAAGAAGTAAAAT+GGG | - | chr4.4:3742072-3742091 | MS.gene20146:CDS | 20.0% |
| !! | TATTTATGAATTAGTGTAAG+CGG | + | chr4.4:3742804-3742823 | None:intergenic | 20.0% |
| !!! | CAATTCAAATACTGTTTTTT+AGG | - | chr4.4:3741729-3741748 | MS.gene20146:CDS | 20.0% |
| !!! | GTGTTTTTTACGATTAATAT+TGG | - | chr4.4:3742167-3742186 | MS.gene20146:CDS | 20.0% |
| !!! | TACAATTTTAAGGATTGAAT+AGG | - | chr4.4:3740805-3740824 | MS.gene20146:CDS | 20.0% |
| !!! | TTTGTTATAAACCACATTAT+CGG | - | chr4.4:3741698-3741717 | MS.gene20146:CDS | 20.0% |
| ! | AAACAACACAGTTTAATAAG+AGG | + | chr4.4:3742275-3742294 | None:intergenic | 25.0% |
| ! | ACAGAAAAATCCTTTACAAA+AGG | + | chr4.4:3742852-3742871 | None:intergenic | 25.0% |
| ! | ACATTATAACAGTAGAAACA+AGG | + | chr4.4:3742902-3742921 | None:intergenic | 25.0% |
| ! | CAATAATTCTTATTCGGAAT+TGG | - | chr4.4:3740895-3740914 | MS.gene20146:CDS | 25.0% |
| ! | GTTTAATAAGAGGAATGATA+AGG | + | chr4.4:3742265-3742284 | None:intergenic | 25.0% |
| ! | TCATCATTACTATACACAAT+TGG | + | chr4.4:3740650-3740669 | None:intergenic | 25.0% |
| ! | TTTGAGAAAGAAGTAAAATG+GGG | - | chr4.4:3742073-3742092 | MS.gene20146:CDS | 25.0% |
| !! | TTGGAACACATTAGTTTATT+TGG | + | chr4.4:3740722-3740741 | None:intergenic | 25.0% |
| !!! | AGTTTTTGAAATTGTCTTGA+AGG | + | chr4.4:3740687-3740706 | None:intergenic | 25.0% |
| !!! | ATACATTTTTCAACAAGCAT+GGG | - | chr4.4:3741067-3741086 | MS.gene20146:intron | 25.0% |
| !!! | ATTTCCTGTTGTTGTTTTAT+TGG | + | chr4.4:3740838-3740857 | None:intergenic | 25.0% |
| !!! | GTTTTTGAAATTGTCTTGAA+GGG | + | chr4.4:3740686-3740705 | None:intergenic | 25.0% |
| !!! | TAGAATGCTTTGATTTCTTT+TGG | + | chr4.4:3742376-3742395 | None:intergenic | 25.0% |
| AAAAGAAAATGTATCCAAGC+TGG | - | chr4.4:3741344-3741363 | MS.gene20146:CDS | 30.0% | |
| AATCCCTAAATTGGAAATCT+TGG | + | chr4.4:3740741-3740760 | None:intergenic | 30.0% | |
| ATATACAGGATACATACCTT+TGG | + | chr4.4:3742451-3742470 | None:intergenic | 30.0% | |
| CAAAAATTTCACATATGCCT+CGG | + | chr4.4:3741885-3741904 | None:intergenic | 30.0% | |
| GGATAATTATAGACTATGAC+AGG | + | chr4.4:3742355-3742374 | None:intergenic | 30.0% | |
| GTATATGTAAGTCGAATGAA+GGG | + | chr4.4:3742007-3742026 | None:intergenic | 30.0% | |
| GTTATAATGTTACAGACTAG+AGG | - | chr4.4:3742912-3742931 | MS.gene20146:CDS | 30.0% | |
| GTTATGATGTCATTCAACAA+AGG | - | chr4.4:3742765-3742784 | MS.gene20146:CDS | 30.0% | |
| GTTCCAAGATTTCCAATTTA+GGG | - | chr4.4:3740735-3740754 | MS.gene20146:intron | 30.0% | |
| TAATAAGAGGAATGATAAGG+TGG | + | chr4.4:3742262-3742281 | None:intergenic | 30.0% | |
| TATATGTAAGTCGAATGAAG+GGG | + | chr4.4:3742006-3742025 | None:intergenic | 30.0% | |
| TGTATATGTAAGTCGAATGA+AGG | + | chr4.4:3742008-3742027 | None:intergenic | 30.0% | |
| TGTTCCAAGATTTCCAATTT+AGG | - | chr4.4:3740734-3740753 | MS.gene20146:intron | 30.0% | |
| TTAAATTCGGAATGAACCTT+TGG | - | chr4.4:3740866-3740885 | MS.gene20146:CDS | 30.0% | |
| TTAATATGTCTATGGTGCTT+GGG | - | chr4.4:3742477-3742496 | MS.gene20146:intron | 30.0% | |
| TTACTTATATGACACTGAGT+GGG | - | chr4.4:3742629-3742648 | MS.gene20146:intron | 30.0% | |
| TTTAATATGTCTATGGTGCT+TGG | - | chr4.4:3742476-3742495 | MS.gene20146:intron | 30.0% | |
| TTTACTTATATGACACTGAG+TGG | - | chr4.4:3742628-3742647 | MS.gene20146:intron | 30.0% | |
| ! | ATGTGAAATTTTTGTGTCAG+TGG | - | chr4.4:3741891-3741910 | MS.gene20146:CDS | 30.0% |
| ! | GTAAAGGATTTTTCTGTTCA+TGG | - | chr4.4:3742855-3742874 | MS.gene20146:CDS | 30.0% |
| ! | TACTGTGTTTCCTTTTGTAA+AGG | - | chr4.4:3742839-3742858 | MS.gene20146:CDS | 30.0% |
| ! | TCACATCTCTAATATTTTCC+AGG | + | chr4.4:3743053-3743072 | None:intergenic | 30.0% |
| ! | TTGCATTGATCGTTTGAAAA+TGG | - | chr4.4:3741970-3741989 | MS.gene20146:CDS | 30.0% |
| !! | CATACATTTTTCAACAAGCA+TGG | - | chr4.4:3741066-3741085 | MS.gene20146:intron | 30.0% |
| AAAAAAGAAGCTTACCGTGT+TGG | + | chr4.4:3740593-3740612 | None:intergenic | 35.0% | |
| AAACAGTCAAAAACGCTTGA+CGG | + | chr4.4:3741443-3741462 | None:intergenic | 35.0% | |
| AATTGTAGAGACCAGACAAT+TGG | + | chr4.4:3740792-3740811 | None:intergenic | 35.0% | |
| ACTTACATATACAGAAGCTG+TGG | - | chr4.4:3742015-3742034 | MS.gene20146:CDS | 35.0% | |
| AGGTCAATGTACCATTCATA+TGG | + | chr4.4:3742958-3742977 | None:intergenic | 35.0% | |
| ATATGTAAGTCGAATGAAGG+GGG | + | chr4.4:3742005-3742024 | None:intergenic | 35.0% | |
| ATCTGCAAAAGCAGATAAGA+AGG | - | chr4.4:3741287-3741306 | MS.gene20146:CDS | 35.0% | |
| ATGTTACAGACTAGAGGATA+TGG | - | chr4.4:3742918-3742937 | MS.gene20146:CDS | 35.0% | |
| ATTGTAGAGACCAGACAATT+GGG | + | chr4.4:3740791-3740810 | None:intergenic | 35.0% | |
| CCATAAATTCCATATCCTCA+AGG | + | chr4.4:3741931-3741950 | None:intergenic | 35.0% | |
| CCTTGAGGATATGGAATTTA+TGG | - | chr4.4:3741928-3741947 | MS.gene20146:CDS | 35.0% | |
| CTCACCAATAAAACAACAAC+AGG | - | chr4.4:3740831-3740850 | MS.gene20146:CDS | 35.0% | |
| CTTGGGAAAAGAACTATAGA+AGG | - | chr4.4:3742494-3742513 | MS.gene20146:intron | 35.0% | |
| GAACGTGTAACTGTAATTTC+AGG | - | chr4.4:3742706-3742725 | MS.gene20146:CDS | 35.0% | |
| GCAACCTTTATCAAACTTGT+CGG | + | chr4.4:3741954-3741973 | None:intergenic | 35.0% | |
| TACTTATATGACACTGAGTG+GGG | - | chr4.4:3742630-3742649 | MS.gene20146:intron | 35.0% | |
| TCTGATACTTTACCTCTGTT+AGG | + | chr4.4:3742330-3742349 | None:intergenic | 35.0% | |
| TTAGGCAAAGGATATTTAGC+AGG | + | chr4.4:3740517-3740536 | None:intergenic | 35.0% | |
| ! | AGGATGATTCTTTTTGCAAC+CGG | - | chr4.4:3743027-3743046 | MS.gene20146:CDS | 35.0% |
| ! | ATCTCTAATATTTTCCAGGC+CGG | + | chr4.4:3743049-3743068 | None:intergenic | 35.0% |
| ! | ATTTAGCTTCTGAGCATGAA+AGG | - | chr4.4:3742101-3742120 | MS.gene20146:CDS | 35.0% |
| ! | GTCTGGTCTCTACAATTTTA+AGG | - | chr4.4:3740795-3740814 | MS.gene20146:CDS | 35.0% |
| ! | GTGTAACTGTAATTTCAGGT+TGG | - | chr4.4:3742710-3742729 | MS.gene20146:CDS | 35.0% |
| !! | TTCAGGTTGGAGAGTTAATT+GGG | - | chr4.4:3742723-3742742 | MS.gene20146:CDS | 35.0% |
| !! | TTTCAGGTTGGAGAGTTAAT+TGG | - | chr4.4:3742722-3742741 | MS.gene20146:CDS | 35.0% |
| AACAGTCAAAAACGCTTGAC+GGG | + | chr4.4:3741442-3741461 | None:intergenic | 40.0% | |
| AAGTCTGCAAACGCAATTTC+AGG | + | chr4.4:3741588-3741607 | None:intergenic | 40.0% | |
| AATTCTCTGCACGAAATGTC+GGG | + | chr4.4:3741524-3741543 | None:intergenic | 40.0% | |
| ACACTGCTTACTATGATGGT+AGG | + | chr4.4:3742520-3742539 | None:intergenic | 40.0% | |
| AGAAAATGTATCCAAGCTGG+TGG | - | chr4.4:3741347-3741366 | MS.gene20146:CDS | 40.0% | |
| ATGAATGGTACATTGACCTG+AGG | - | chr4.4:3742959-3742978 | MS.gene20146:CDS | 40.0% | |
| ATGGCCGACAAGTTTGATAA+AGG | - | chr4.4:3741947-3741966 | MS.gene20146:CDS | 40.0% | |
| CAATCACTAGTGGTGACAAT+TGG | + | chr4.4:3741111-3741130 | None:intergenic | 40.0% | |
| CAATGATGACCTAAAGACAG+TGG | - | chr4.4:3742405-3742424 | MS.gene20146:intron | 40.0% | |
| CTGTCTTTAGGTCATCATTG+AGG | + | chr4.4:3742405-3742424 | None:intergenic | 40.0% | |
| CTTAGTCGCGTGTATACATT+TGG | - | chr4.4:3741498-3741517 | MS.gene20146:intron | 40.0% | |
| GAATTCTCTGCACGAAATGT+CGG | + | chr4.4:3741525-3741544 | None:intergenic | 40.0% | |
| GACGATAACTTGAAGGTTAC+CGG | + | chr4.4:3740350-3740369 | None:intergenic | 40.0% | |
| GGATATTTAGCAGGATCAAC+AGG | + | chr4.4:3740508-3740527 | None:intergenic | 40.0% | |
| GTCTACACTGCTTACTATGA+TGG | + | chr4.4:3742524-3742543 | None:intergenic | 40.0% | |
| TACAGAAGCTGTGGAAATAC+TGG | - | chr4.4:3742024-3742043 | MS.gene20146:CDS | 40.0% | |
| TACCATTCATATGGCTCAAC+AGG | + | chr4.4:3742949-3742968 | None:intergenic | 40.0% | |
| TATGGAACAGTGAAACATGC+CGG | - | chr4.4:3742985-3743004 | MS.gene20146:CDS | 40.0% | |
| TATGGATGTTCTTGTGCCAA+AGG | - | chr4.4:3742432-3742451 | MS.gene20146:intron | 40.0% | |
| TCCGTCGTTCAATTCCAAAA+AGG | + | chr4.4:3740320-3740339 | None:intergenic | 40.0% | |
| TGAAATTGCGTTTGCAGACT+TGG | - | chr4.4:3741587-3741606 | MS.gene20146:intron | 40.0% | |
| ! | GCATTTGGCTGAATTTTGGA+TGG | - | chr4.4:3741557-3741576 | MS.gene20146:intron | 40.0% |
| ! | GGAACTTGTGTTGTTGTTGA+GGG | - | chr4.4:3740409-3740428 | MS.gene20146:intron | 40.0% |
| ! | TGGAACTTGTGTTGTTGTTG+AGG | - | chr4.4:3740408-3740427 | MS.gene20146:intron | 40.0% |
| ! | TGTTTGATGCCTTTGGGTTA+TGG | - | chr4.4:3742290-3742309 | MS.gene20146:intron | 40.0% |
| !! | AAGCTTGTTGTTCAGGAGAA+GGG | - | chr4.4:3741243-3741262 | MS.gene20146:CDS | 40.0% |
| !! | ACTGTGTTGTTTGATGCCTT+TGG | - | chr4.4:3742283-3742302 | MS.gene20146:intron | 40.0% |
| !! | ATTTTAGGGACCCAATTGTC+TGG | - | chr4.4:3740778-3740797 | MS.gene20146:intron | 40.0% |
| !! | CAAGCGTTTTTGACTGTTTC+TGG | - | chr4.4:3741444-3741463 | MS.gene20146:intron | 40.0% |
| !! | CTGTGTTGTTTGATGCCTTT+GGG | - | chr4.4:3742284-3742303 | MS.gene20146:intron | 40.0% |
| !! | CTGTTACTTTCGTGAATGTG+TGG | - | chr4.4:3742190-3742209 | MS.gene20146:CDS | 40.0% |
| !! | GCTTTTGTGGTTGGTGTAAT+AGG | - | chr4.4:3742684-3742703 | MS.gene20146:CDS | 40.0% |
| !! | TAAGCTTGTTGTTCAGGAGA+AGG | - | chr4.4:3741242-3741261 | MS.gene20146:CDS | 40.0% |
| !! | TCAGGTTGGAGAGTTAATTG+GGG | - | chr4.4:3742724-3742743 | MS.gene20146:CDS | 40.0% |
| !!! | GCCTTTTTGGAATTGAACGA+CGG | - | chr4.4:3740316-3740335 | MS.gene20146:intron | 40.0% |
| !!! | GTTATACCCAGTTGCTTTTG+TGG | - | chr4.4:3742671-3742690 | MS.gene20146:CDS | 40.0% |
| !!! | TCAAGAGTGAGTCTGGTTTT+AGG | + | chr4.4:3740535-3740554 | None:intergenic | 40.0% |
| AACCGGAAGAAAAGCCGATA+AGG | - | chr4.4:3740285-3740304 | MS.gene20146:CDS | 45.0% | |
| AAGCACCAACCATAGGAGTA+GGG | + | chr4.4:3741801-3741820 | None:intergenic | 45.0% | |
| AAGGTGAACGAAATCACGCA+AGG | + | chr4.4:3740560-3740579 | None:intergenic | 45.0% | |
| AATGGTACATTGACCTGAGG+CGG | - | chr4.4:3742962-3742981 | MS.gene20146:CDS | 45.0% | |
| AATTGCGTTTGCAGACTTGG+AGG | - | chr4.4:3741590-3741609 | MS.gene20146:intron | 45.0% | |
| ACACCAACCACAAAAGCAAC+TGG | + | chr4.4:3742681-3742700 | None:intergenic | 45.0% | |
| ACAGTGAAACATGCCGGATT+CGG | - | chr4.4:3742991-3743010 | MS.gene20146:CDS | 45.0% | |
| AGAGGAATGATAAGGTGGCT+TGG | + | chr4.4:3742257-3742276 | None:intergenic | 45.0% | |
| AGGCAAGAAAGCAAGAATCG+GGG | - | chr4.4:3740252-3740271 | MS.gene20146:CDS | 45.0% | |
| AGTTAATTGGGGGAAGCCAA+AGG | - | chr4.4:3742735-3742754 | MS.gene20146:CDS | 45.0% | |
| ATCTTCTGTTTCGCTCCAGA+AGG | + | chr4.4:3740451-3740470 | None:intergenic | 45.0% | |
| CAAGGATTCAAGAGTGAGTC+TGG | + | chr4.4:3740542-3740561 | None:intergenic | 45.0% | |
| CACCAACCACAAAAGCAACT+GGG | + | chr4.4:3742680-3742699 | None:intergenic | 45.0% | |
| CAGAGAATTCTCACACTTCC+AGG | - | chr4.4:3741535-3741554 | MS.gene20146:intron | 45.0% | |
| CAGGCAAGAAAGCAAGAATC+GGG | - | chr4.4:3740251-3740270 | MS.gene20146:CDS | 45.0% | |
| CATCTCAAACTTCCTCCTTC+TGG | - | chr4.4:3740433-3740452 | MS.gene20146:intron | 45.0% | |
| CCAAAATTCAGCCAAATGCC+TGG | + | chr4.4:3741556-3741575 | None:intergenic | 45.0% | |
| CTGGAAGAATCTGTGACGAA+TGG | - | chr4.4:3742043-3742062 | MS.gene20146:CDS | 45.0% | |
| CTGTCGGAGAATTCAGCTTT+GGG | + | chr4.4:3740181-3740200 | None:intergenic | 45.0% | |
| CTTTGTTCAGTGAAGCAGAG+AGG | - | chr4.4:3741163-3741182 | MS.gene20146:CDS | 45.0% | |
| GAAAGATCTACACTTCAGCC+CGG | - | chr4.4:3741369-3741388 | MS.gene20146:intron | 45.0% | |
| GCAGGCAAGAAAGCAAGAAT+CGG | - | chr4.4:3740250-3740269 | MS.gene20146:CDS | 45.0% | |
| GCATGCATACCATAACCCAA+AGG | + | chr4.4:3742302-3742321 | None:intergenic | 45.0% | |
| GCTGAACAGGTTCTTCATGT+TGG | - | chr4.4:3740481-3740500 | MS.gene20146:CDS | 45.0% | |
| GCTTCAACATCAGCTTCAGT+TGG | + | chr4.4:3741219-3741238 | None:intergenic | 45.0% | |
| GTCACCACTAGTGATTGTGA+GGG | - | chr4.4:3741114-3741133 | MS.gene20146:intron | 45.0% | |
| GTTAATTGGGGGAAGCCAAA+GGG | - | chr4.4:3742736-3742755 | MS.gene20146:CDS | 45.0% | |
| GTTACTTGACAACTGCCTTG+AGG | - | chr4.4:3741913-3741932 | MS.gene20146:CDS | 45.0% | |
| TATCTGCTGTTGCTCGGATT+CGG | - | chr4.4:3741022-3741041 | MS.gene20146:intron | 45.0% | |
| TATTCCTCGAAAGGACGGAA+AGG | - | chr4.4:3741392-3741411 | MS.gene20146:intron | 45.0% | |
| TCAACATCAGCTTCAGTTGG+AGG | + | chr4.4:3741216-3741235 | None:intergenic | 45.0% | |
| TGACAACTGCCTTGAGGATA+TGG | - | chr4.4:3741919-3741938 | MS.gene20146:CDS | 45.0% | |
| TGCAGATATCTGCTGTTGCT+CGG | - | chr4.4:3741016-3741035 | MS.gene20146:intron | 45.0% | |
| TGCATGCAGATACCTAACAG+AGG | - | chr4.4:3742315-3742334 | MS.gene20146:intron | 45.0% | |
| TGCCTGTTGAGCCATATGAA+TGG | - | chr4.4:3742944-3742963 | MS.gene20146:CDS | 45.0% | |
| TGTAGATCTTTCCACCAGCT+TGG | + | chr4.4:3741361-3741380 | None:intergenic | 45.0% | |
| TGTCACCACTAGTGATTGTG+AGG | - | chr4.4:3741113-3741132 | MS.gene20146:intron | 45.0% | |
| TTCAAAGCCAAGACCGAATC+CGG | + | chr4.4:3743007-3743026 | None:intergenic | 45.0% | |
| TTCTCACACTTCCAGGCATT+TGG | - | chr4.4:3741542-3741561 | MS.gene20146:intron | 45.0% | |
| TTGACACTCAGCCGATAATG+TGG | + | chr4.4:3741712-3741731 | None:intergenic | 45.0% | |
| ! | AAAGCACCAACCATAGGAGT+AGG | + | chr4.4:3741802-3741821 | None:intergenic | 45.0% |
| ! | CAGGTTGGAGAGTTAATTGG+GGG | - | chr4.4:3742725-3742744 | MS.gene20146:CDS | 45.0% |
| ! | CCAGGCATTTGGCTGAATTT+TGG | - | chr4.4:3741553-3741572 | MS.gene20146:intron | 45.0% |
| ! | CTTGGACAACTTGTTCAGAC+TGG | - | chr4.4:3740388-3740407 | MS.gene20146:intron | 45.0% |
| ! | TAAGGACGCTTTCGCCTTTT+TGG | - | chr4.4:3740303-3740322 | MS.gene20146:intron | 45.0% |
| !! | AAAGGCGAAAGCGTCCTTAT+CGG | + | chr4.4:3740302-3740321 | None:intergenic | 45.0% |
| !! | AAGCGTCGACGATAACTTGA+AGG | + | chr4.4:3740357-3740376 | None:intergenic | 45.0% |
| !! | ACAGCAAAAGCACCAACCAT+AGG | + | chr4.4:3741808-3741827 | None:intergenic | 45.0% |
| !! | AGCTGCTAAGCTTGTTGTTC+AGG | - | chr4.4:3741236-3741255 | MS.gene20146:CDS | 45.0% |
| !! | AGCTTGTTGTTCAGGAGAAG+GGG | - | chr4.4:3741244-3741263 | MS.gene20146:CDS | 45.0% |
| !! | GAATTCAGCTTTGGGAACCT+CGG | + | chr4.4:3740173-3740192 | None:intergenic | 45.0% |
| !! | GATTCGGTCTTGGCTTTGAA+AGG | - | chr4.4:3743007-3743026 | MS.gene20146:CDS | 45.0% |
| !! | TATGGTTGGTGCTTTTGCTG+TGG | - | chr4.4:3741807-3741826 | MS.gene20146:CDS | 45.0% |
| !!! | GTCCTTATCGGCTTTTCTTC+CGG | + | chr4.4:3740290-3740309 | None:intergenic | 45.0% |
| !!! | GTGAGTCTGGTTTTAGGCAA+AGG | + | chr4.4:3740529-3740548 | None:intergenic | 45.0% |
| !!! | TACCCAGTTGCTTTTGTGGT+TGG | - | chr4.4:3742675-3742694 | MS.gene20146:CDS | 45.0% |
| AACCTGATCCACCGTCTTCA+CGG | + | chr4.4:3740228-3740247 | None:intergenic | 50.0% | |
| AAGTCGAATGAAGGGGGTTG+AGG | + | chr4.4:3741999-3742018 | None:intergenic | 50.0% | |
| ACATCAGCTTCAGTTGGAGG+CGG | + | chr4.4:3741213-3741232 | None:intergenic | 50.0% | |
| AGAAAGCAAGAATCGGGGGA+TGG | - | chr4.4:3740257-3740276 | MS.gene20146:CDS | 50.0% | |
| AGCACCAACCATAGGAGTAG+GGG | + | chr4.4:3741800-3741819 | None:intergenic | 50.0% | |
| AGCACCCTCACAATCACTAG+TGG | + | chr4.4:3741121-3741140 | None:intergenic | 50.0% | |
| ATTCCCTTCCCACGATATCC+TGG | - | chr4.4:3743072-3743091 | MS.gene20146:CDS | 50.0% | |
| CAACTTCACCCCTACTCCTA+TGG | - | chr4.4:3741789-3741808 | MS.gene20146:CDS | 50.0% | |
| CATAGGAGTAGGGGTGAAGT+TGG | + | chr4.4:3741791-3741810 | None:intergenic | 50.0% | |
| CATCATAACGCTCCTCCCTT+TGG | + | chr4.4:3742754-3742773 | None:intergenic | 50.0% | |
| CCAATTATCCACCGTAACCG+AGG | - | chr4.4:3740153-3740172 | MS.gene20146:CDS | 50.0% | |
| CCATAGCAGCCACTGTCTTT+AGG | + | chr4.4:3742417-3742436 | None:intergenic | 50.0% | |
| CCTAAAGACAGTGGCTGCTA+TGG | - | chr4.4:3742414-3742433 | MS.gene20146:intron | 50.0% | |
| CCTCGGTTACGGTGGATAAT+TGG | + | chr4.4:3740156-3740175 | None:intergenic | 50.0% | |
| CCTTCGTTCCAGAACCAACA+CGG | - | chr4.4:3740576-3740595 | MS.gene20146:intron | 50.0% | |
| GAAAGCAAGAATCGGGGGAT+GGG | - | chr4.4:3740258-3740277 | MS.gene20146:CDS | 50.0% | |
| GCTGTCGGAGAATTCAGCTT+TGG | + | chr4.4:3740182-3740201 | None:intergenic | 50.0% | |
| GGATTTGATCAGGACGCTGT+CGG | + | chr4.4:3740197-3740216 | None:intergenic | 50.0% | |
| GGCAAGAAAGCAAGAATCGG+GGG | - | chr4.4:3740253-3740272 | MS.gene20146:CDS | 50.0% | |
| GGTTACGGTGGATAATTGGC+CGG | + | chr4.4:3740152-3740171 | None:intergenic | 50.0% | |
| GTTCAGTGAAGCAGAGAGGT+TGG | - | chr4.4:3741167-3741186 | MS.gene20146:CDS | 50.0% | |
| TACATTGACCTGAGGCGGTA+TGG | - | chr4.4:3742967-3742986 | MS.gene20146:CDS | 50.0% | |
| TCCGTCCTTTCGAGGAATAC+CGG | + | chr4.4:3741391-3741410 | None:intergenic | 50.0% | |
| TGAAGCAGAGAGGTTGGAGA+AGG | - | chr4.4:3741173-3741192 | MS.gene20146:CDS | 50.0% | |
| TGGATAATTGGCCGGATGAG+AGG | + | chr4.4:3740144-3740163 | None:intergenic | 50.0% | |
| TTCACCCCTACTCCTATGGT+TGG | - | chr4.4:3741793-3741812 | MS.gene20146:CDS | 50.0% | |
| TTCTGTTTCGCTCCAGAAGG+AGG | + | chr4.4:3740448-3740467 | None:intergenic | 50.0% | |
| ! | AAACATGCCGGATTCGGTCT+TGG | - | chr4.4:3742997-3743016 | MS.gene20146:CDS | 50.0% |
| ! | ACTAGTGATTGTGAGGGTGC+TGG | - | chr4.4:3741120-3741139 | MS.gene20146:intron | 50.0% |
| ! | CTTTGCATCGACACTCAGTC+TGG | + | chr4.4:3740939-3740958 | None:intergenic | 50.0% |
| ! | GAAGGAGATTAGTGCTGCTG+TGG | - | chr4.4:3741305-3741324 | MS.gene20146:CDS | 50.0% |
| ! | GATTCTTTTTGCAACCGGCC+TGG | - | chr4.4:3743032-3743051 | MS.gene20146:CDS | 50.0% |
| ! | GGAATGATAAGGTGGCTTGG+TGG | + | chr4.4:3742254-3742273 | None:intergenic | 50.0% |
| !! | AGCTTTGGGAACCTCGGTTA+CGG | + | chr4.4:3740167-3740186 | None:intergenic | 50.0% |
| !! | AGGTGGCTTGGTGGTTGAAT+AGG | + | chr4.4:3742245-3742264 | None:intergenic | 50.0% |
| !! | CAGACTGAGTGTCGATGCAA+AGG | - | chr4.4:3740937-3740956 | MS.gene20146:intron | 50.0% |
| !! | GAAGCTTACCGTGTTGGTTC+TGG | + | chr4.4:3740587-3740606 | None:intergenic | 50.0% |
| !! | GCTTGTTGTTCAGGAGAAGG+GGG | - | chr4.4:3741245-3741264 | MS.gene20146:CDS | 50.0% |
| !! | GGCGGATGATGGATTTGATC+AGG | + | chr4.4:3740207-3740226 | None:intergenic | 50.0% |
| !! | GGTGGCTTGGTGGTTGAATA+GGG | + | chr4.4:3742244-3742263 | None:intergenic | 50.0% |
| AATTGGGGGAAGCCAAAGGG+AGG | - | chr4.4:3742739-3742758 | MS.gene20146:CDS | 55.0% | |
| ATCGGGGGATGGGTGAAAAC+CGG | - | chr4.4:3740268-3740287 | MS.gene20146:CDS | 55.0% | |
| CCCGGTATTCCTCGAAAGGA+CGG | - | chr4.4:3741387-3741406 | MS.gene20146:intron | 55.0% | |
| CCGTCCTTTCGAGGAATACC+GGG | + | chr4.4:3741390-3741409 | None:intergenic | 55.0% | |
| CTGCCAGGATATCGTGGGAA+GGG | + | chr4.4:3743078-3743097 | None:intergenic | 55.0% | |
| CTGCTCTGCCAGGATATCGT+GGG | + | chr4.4:3743083-3743102 | None:intergenic | 55.0% | |
| GACGGTGGATCAGGTTTAGC+AGG | - | chr4.4:3740232-3740251 | MS.gene20146:CDS | 55.0% | |
| GGATGATATGAAGTGCGCCG+AGG | - | chr4.4:3741865-3741884 | MS.gene20146:CDS | 55.0% | |
| TCACTGTTCCATACCGCCTC+AGG | + | chr4.4:3742978-3742997 | None:intergenic | 55.0% | |
| TCAGCCCGGTATTCCTCGAA+AGG | - | chr4.4:3741383-3741402 | MS.gene20146:intron | 55.0% | |
| TCCACCTTTCCGTCCTTTCG+AGG | + | chr4.4:3741399-3741418 | None:intergenic | 55.0% | |
| TCCATCATCCGCCGTGAAGA+CGG | - | chr4.4:3740214-3740233 | MS.gene20146:CDS | 55.0% | |
| TCCTCGAAAGGACGGAAAGG+TGG | - | chr4.4:3741395-3741414 | MS.gene20146:intron | 55.0% | |
| TCTGCCAGGATATCGTGGGA+AGG | + | chr4.4:3743079-3743098 | None:intergenic | 55.0% | |
| TCTGCTCTGCCAGGATATCG+TGG | + | chr4.4:3743084-3743103 | None:intergenic | 55.0% | |
| TGAATAGGGCGGAGCAGCAA+AGG | + | chr4.4:3742230-3742249 | None:intergenic | 55.0% | |
| TGTTGTTCAGGAGAAGGGGG+AGG | - | chr4.4:3741248-3741267 | MS.gene20146:CDS | 55.0% | |
| TTTGGGAACCTCGGTTACGG+TGG | + | chr4.4:3740164-3740183 | None:intergenic | 55.0% | |
| ! | GACGCTTCGCTTGCTGATCT+TGG | - | chr4.4:3740370-3740389 | MS.gene20146:intron | 55.0% |
| !! | CCGTGTTGGTTCTGGAACGA+AGG | + | chr4.4:3740579-3740598 | None:intergenic | 55.0% |
| !! | GGCTTGGTGGTTGAATAGGG+CGG | + | chr4.4:3742241-3742260 | None:intergenic | 55.0% |
| ACCGTCTTCACGGCGGATGA+TGG | + | chr4.4:3740218-3740237 | None:intergenic | 60.0% | |
| ATCATCCGCCGTGAAGACGG+TGG | - | chr4.4:3740217-3740236 | MS.gene20146:CDS | 60.0% | |
| CTGATCCACCGTCTTCACGG+CGG | + | chr4.4:3740225-3740244 | None:intergenic | 60.0% | |
| GATCGAGCTTCGCGCTGAAC+AGG | - | chr4.4:3740468-3740487 | MS.gene20146:CDS | 60.0% | |
| GGCGGAGCAGCAAAGGACAT+GGG | + | chr4.4:3742223-3742242 | None:intergenic | 60.0% | |
| TTGAACGACGGAAGCTGCGC+CGG | - | chr4.4:3740328-3740347 | MS.gene20146:intron | 60.0% | |
| CGCCGTGAAGACGGTGGATC+AGG | - | chr4.4:3740223-3740242 | MS.gene20146:CDS | 65.0% | |
| GGGCGGAGCAGCAAAGGACA+TGG | + | chr4.4:3742224-3742243 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3740133 | 3743110 | 3740133 | ID=MS.gene20146 |
| chr4.4 | mRNA | 3740133 | 3743110 | 3740133 | ID=MS.gene20146.t1;Parent=MS.gene20146 |
| chr4.4 | exon | 3742646 | 3743110 | 3742646 | ID=MS.gene20146.t1.exon1;Parent=MS.gene20146.t1 |
| chr4.4 | CDS | 3742646 | 3743110 | 3742646 | ID=cds.MS.gene20146.t1;Parent=MS.gene20146.t1 |
| chr4.4 | exon | 3741632 | 3742222 | 3741632 | ID=MS.gene20146.t1.exon2;Parent=MS.gene20146.t1 |
| chr4.4 | CDS | 3741632 | 3742222 | 3741632 | ID=cds.MS.gene20146.t1;Parent=MS.gene20146.t1 |
| chr4.4 | exon | 3741121 | 3741377 | 3741121 | ID=MS.gene20146.t1.exon3;Parent=MS.gene20146.t1 |
| chr4.4 | CDS | 3741121 | 3741377 | 3741121 | ID=cds.MS.gene20146.t1;Parent=MS.gene20146.t1 |
| chr4.4 | exon | 3740790 | 3740919 | 3740790 | ID=MS.gene20146.t1.exon4;Parent=MS.gene20146.t1 |
| chr4.4 | CDS | 3740790 | 3740919 | 3740790 | ID=cds.MS.gene20146.t1;Parent=MS.gene20146.t1 |
| chr4.4 | exon | 3740457 | 3740515 | 3740457 | ID=MS.gene20146.t1.exon5;Parent=MS.gene20146.t1 |
| chr4.4 | CDS | 3740457 | 3740515 | 3740457 | ID=cds.MS.gene20146.t1;Parent=MS.gene20146.t1 |
| chr4.4 | exon | 3740133 | 3740316 | 3740133 | ID=MS.gene20146.t1.exon6;Parent=MS.gene20146.t1 |
| chr4.4 | CDS | 3740133 | 3740316 | 3740133 | ID=cds.MS.gene20146.t1;Parent=MS.gene20146.t1 |
| Gene Sequence |
| Protein sequence |
