Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20348.t1 | XP_003611166.2 | 95.4 | 545 | 25 | 0 | 1 | 545 | 1 | 545 | 1.50E-304 | 1054.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20348.t1 | Q9S746 | 56.0 | 529 | 226 | 3 | 13 | 538 | 63 | 587 | 8.6e-168 | 591.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20348.t1 | G7KER7 | 95.4 | 545 | 25 | 0 | 1 | 545 | 1 | 545 | 1.1e-304 | 1054.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016758 | MS.gene20348 | PPI |
| MS.gene81620 | MS.gene20348 | PPI |
| MS.gene070505 | MS.gene20348 | PPI |
| MS.gene057886 | MS.gene20348 | PPI |
| MS.gene070509 | MS.gene20348 | PPI |
| MS.gene070503 | MS.gene20348 | PPI |
| MS.gene070507 | MS.gene20348 | PPI |
| MS.gene81615 | MS.gene20348 | PPI |
| MS.gene057884 | MS.gene20348 | PPI |
| MS.gene070492 | MS.gene20348 | PPI |
| MS.gene057883 | MS.gene20348 | PPI |
| MS.gene016742 | MS.gene20348 | PPI |
| MS.gene20348 | MS.gene070511 | PPI |
| MS.gene070510 | MS.gene20348 | PPI |
| MS.gene81622 | MS.gene20348 | PPI |
| MS.gene67840 | MS.gene20348 | PPI |
| MS.gene016743 | MS.gene20348 | PPI |
| MS.gene81617 | MS.gene20348 | PPI |
| MS.gene37911 | MS.gene20348 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20348.t1 | MTR_5g011020 | 95.413 | 545 | 25 | 0 | 1 | 545 | 1 | 545 | 0.0 | 1080 |
| MS.gene20348.t1 | MTR_5g011010 | 88.235 | 544 | 64 | 0 | 1 | 544 | 36 | 579 | 0.0 | 1001 |
| MS.gene20348.t1 | MTR_1g101770 | 59.781 | 547 | 206 | 5 | 1 | 540 | 34 | 573 | 0.0 | 657 |
| MS.gene20348.t1 | MTR_2g100070 | 56.121 | 531 | 226 | 3 | 13 | 540 | 63 | 589 | 0.0 | 615 |
| MS.gene20348.t1 | MTR_8g016320 | 57.250 | 531 | 220 | 3 | 13 | 540 | 55 | 581 | 0.0 | 610 |
| MS.gene20348.t1 | MTR_4g005860 | 45.818 | 550 | 254 | 8 | 1 | 538 | 42 | 559 | 2.01e-157 | 461 |
| MS.gene20348.t1 | MTR_1g101760 | 51.899 | 474 | 152 | 8 | 1 | 448 | 34 | 457 | 5.97e-147 | 431 |
| MS.gene20348.t1 | MTR_5g041340 | 42.701 | 548 | 232 | 11 | 13 | 543 | 54 | 536 | 2.84e-138 | 411 |
| MS.gene20348.t1 | MTR_5g024110 | 58.929 | 56 | 23 | 0 | 149 | 204 | 23 | 78 | 6.43e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20348.t1 | AT1G12570 | 63.291 | 553 | 172 | 7 | 1 | 539 | 34 | 569 | 0.0 | 707 |
| MS.gene20348.t1 | AT5G51950 | 59.375 | 544 | 212 | 5 | 1 | 538 | 34 | 574 | 0.0 | 646 |
| MS.gene20348.t1 | AT5G51950 | 59.375 | 544 | 212 | 5 | 1 | 538 | 1 | 541 | 0.0 | 646 |
| MS.gene20348.t1 | AT5G51950 | 59.124 | 548 | 209 | 6 | 1 | 538 | 34 | 576 | 0.0 | 646 |
| MS.gene20348.t1 | AT3G56060 | 58.456 | 544 | 214 | 6 | 1 | 540 | 34 | 569 | 0.0 | 641 |
| MS.gene20348.t1 | AT1G72970 | 55.827 | 532 | 228 | 3 | 11 | 539 | 61 | 588 | 0.0 | 607 |
| MS.gene20348.t1 | AT5G51930 | 55.311 | 546 | 232 | 3 | 1 | 543 | 14 | 550 | 0.0 | 601 |
| MS.gene20348.t1 | AT5G51930 | 55.367 | 531 | 225 | 3 | 1 | 528 | 61 | 582 | 0.0 | 585 |
| MS.gene20348.t1 | AT1G72970 | 54.614 | 531 | 209 | 3 | 11 | 539 | 61 | 561 | 0.0 | 578 |
| MS.gene20348.t1 | AT1G73050 | 48.624 | 545 | 237 | 8 | 1 | 538 | 42 | 550 | 1.31e-167 | 487 |
| MS.gene20348.t1 | AT1G14190 | 43.173 | 542 | 230 | 10 | 13 | 544 | 16 | 489 | 6.36e-137 | 406 |
| MS.gene20348.t1 | AT1G14190 | 43.173 | 542 | 230 | 10 | 13 | 544 | 37 | 510 | 9.58e-137 | 407 |
| MS.gene20348.t1 | AT1G14185 | 44.340 | 530 | 226 | 10 | 13 | 537 | 37 | 502 | 7.50e-136 | 404 |
Find 154 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCAAAACCCTATGATTT+TGG | 0.120797 | 5.1:-4630056 | None:intergenic |
| GCTTGGACCAAGAAGCTTTC+AGG | 0.175664 | 5.1:+4633201 | MS.gene20348:CDS |
| TAATTTGGTGTGCAGGTATA+TGG | 0.191827 | 5.1:+4633838 | MS.gene20348:intron |
| CACAAATACTTCAATGTCTT+TGG | 0.202029 | 5.1:+4633487 | MS.gene20348:CDS |
| TTCTATGATTACATCATAAT+TGG | 0.207760 | 5.1:+4629994 | MS.gene20348:CDS |
| TCCAAATGACCCGTTGAAAT+TGG | 0.223565 | 5.1:-4633254 | None:intergenic |
| GCACTTAAATTTGTTATGTT+TGG | 0.228637 | 5.1:-4630108 | None:intergenic |
| GACATGTTTGTGTATTTAAA+TGG | 0.229277 | 5.1:-4633407 | None:intergenic |
| TGGAGAGAGTGGTGGCATTT+TGG | 0.237390 | 5.1:+4631127 | MS.gene20348:CDS |
| ACACACTGCTGCTGATCTTT+TGG | 0.240891 | 5.1:+4631287 | MS.gene20348:CDS |
| TAGTGAAGGAATCATATAAA+TGG | 0.250727 | 5.1:+4631103 | MS.gene20348:CDS |
| GCCAATTTCAACGGGTCATT+TGG | 0.251169 | 5.1:+4633253 | MS.gene20348:CDS |
| AGCAGTTAGGGATGGATTAT+TGG | 0.263227 | 5.1:+4631173 | MS.gene20348:CDS |
| CAGTGTGTCTTTGACCATTT+TGG | 0.276171 | 5.1:-4631272 | None:intergenic |
| CACTTAAATTTGTTATGTTT+GGG | 0.284684 | 5.1:-4630107 | None:intergenic |
| ATCCACCCCTGAAAGCTTCT+TGG | 0.312971 | 5.1:-4633208 | None:intergenic |
| GTTACCAAAGGGTTCTCATT+TGG | 0.324244 | 5.1:-4633293 | None:intergenic |
| CAACACTATCCCAAAATCAT+AGG | 0.325480 | 5.1:+4630046 | MS.gene20348:CDS |
| GGTACAATCTTTGACCAAAA+TGG | 0.327169 | 5.1:+4631258 | MS.gene20348:CDS |
| ATCCCAAAATCATAGGGTTT+TGG | 0.327308 | 5.1:+4630053 | MS.gene20348:CDS |
| GGTTGTTGATAATGATTATA+AGG | 0.328782 | 5.1:+4633574 | MS.gene20348:CDS |
| TCTGGGGTCCTTTGCTTTGG+TGG | 0.336604 | 5.1:-4633146 | None:intergenic |
| AACTCAAGGGCTCGTGTTCT+AGG | 0.338703 | 5.1:+4630204 | MS.gene20348:CDS |
| ATGCATCTTTCTAAGTCTCT+TGG | 0.342163 | 5.1:-4633335 | None:intergenic |
| CTTCTGATGTTGAGTGGAAT+TGG | 0.347818 | 5.1:+4632421 | MS.gene20348:CDS |
| TCTCATTTGGATCGGTGTTT+CGG | 0.351009 | 5.1:-4633280 | None:intergenic |
| GCTTCTGGGGTCCTTTGCTT+TGG | 0.357996 | 5.1:-4633149 | None:intergenic |
| TTTCTAAGTCTCTTGGGTCT+TGG | 0.359107 | 5.1:-4633328 | None:intergenic |
| TTTACTTATGATCATATTCA+TGG | 0.362174 | 5.1:+4631222 | MS.gene20348:CDS |
| GTTTCCCTCATTTCTGTTGT+TGG | 0.362758 | 5.1:+4632565 | MS.gene20348:CDS |
| GTGGCTTGAGGATTTGTTCC+AGG | 0.371531 | 5.1:-4633650 | None:intergenic |
| ATAACAAATTTAAGTGCCTT+TGG | 0.375662 | 5.1:+4630114 | MS.gene20348:CDS |
| GTGTTACATCAACCATTTGT+AGG | 0.376668 | 5.1:+4632481 | MS.gene20348:CDS |
| ATTGAAGTATTTGTGTGTTT+AGG | 0.379914 | 5.1:-4633479 | None:intergenic |
| GATAATGATTATAAGGTTCT+TGG | 0.380549 | 5.1:+4633581 | MS.gene20348:CDS |
| TGTTCCAGGAGAATGATTAA+AGG | 0.385718 | 5.1:-4633636 | None:intergenic |
| TGGCACTGCAGGGTGTCCTT+TGG | 0.392070 | 5.1:+4630020 | MS.gene20348:CDS |
| TTGGAGCAGCACATCACCTT+AGG | 0.392870 | 5.1:+4632440 | MS.gene20348:CDS |
| ATTTATGTTGTTAGTGAAGC+TGG | 0.394417 | 5.1:+4631066 | MS.gene20348:intron |
| AATACAACTCCATGTGCAAT+TGG | 0.394429 | 5.1:-4632304 | None:intergenic |
| TGCATCTTTCTAAGTCTCTT+GGG | 0.395588 | 5.1:-4633334 | None:intergenic |
| TGTTGTTAGTGAAGCTGGTT+GGG | 0.396158 | 5.1:+4631071 | MS.gene20348:intron |
| GAACGTGGTGGATCACCTTA+TGG | 0.396955 | 5.1:+4630081 | MS.gene20348:CDS |
| CATACTTGAAACAAGGGATT+AGG | 0.405305 | 5.1:+4632356 | MS.gene20348:CDS |
| CAACGATTCATTTCTGAAGA+TGG | 0.409151 | 5.1:+4630174 | MS.gene20348:CDS |
| GTCAATGGCAATCAGCAGTT+AGG | 0.420528 | 5.1:+4631160 | MS.gene20348:CDS |
| GGGACATAAACAGAGTTCAT+TGG | 0.423569 | 5.1:-4632523 | None:intergenic |
| AGTGAAGGAATCATATAAAT+GGG | 0.428159 | 5.1:+4631104 | MS.gene20348:CDS |
| TTTATTTATACAATATTAAG+TGG | 0.433479 | 5.1:-4633900 | None:intergenic |
| AATTATGATGTAATCATAGA+AGG | 0.433575 | 5.1:-4629992 | None:intergenic |
| ATGGTGGTTGTCAAGTTGGT+AGG | 0.436196 | 5.1:+4633552 | MS.gene20348:CDS |
| AATTTGGTGTGCAGGTATAT+GGG | 0.437345 | 5.1:+4633839 | MS.gene20348:intron |
| TTTGGCCTCCTATGCGTCAA+TGG | 0.438093 | 5.1:+4631145 | MS.gene20348:CDS |
| ATCTTGGGGCCAATTTCAAC+GGG | 0.441009 | 5.1:+4633245 | MS.gene20348:CDS |
| ATAATTGGTGGTGGCACTGC+AGG | 0.447684 | 5.1:+4630009 | MS.gene20348:CDS |
| CAAGCCACTGTTATGATGCT+TGG | 0.447887 | 5.1:+4633665 | MS.gene20348:CDS |
| GGACATAAACAGAGTTCATT+GGG | 0.454116 | 5.1:-4632522 | None:intergenic |
| GAGACACTGTGATGACTATA+TGG | 0.455474 | 5.1:+4633522 | MS.gene20348:CDS |
| TGATCATATTCATGGGACTA+AGG | 0.458885 | 5.1:+4631230 | MS.gene20348:CDS |
| GACATTCCTTGTCCTACAAA+TGG | 0.458901 | 5.1:-4632493 | None:intergenic |
| TCTACCTTTAATCATTCTCC+TGG | 0.466597 | 5.1:+4633632 | MS.gene20348:CDS |
| CCCATCTCCTTCCCCGGTAG+AGG | 0.467548 | 5.1:+4632543 | MS.gene20348:CDS |
| CATATTCATGGGACTAAGGT+TGG | 0.468307 | 5.1:+4631234 | MS.gene20348:CDS |
| CTTGGACCAAGAAGCTTTCA+GGG | 0.472516 | 5.1:+4633202 | MS.gene20348:CDS |
| TATCATGGTGGTTGTCAAGT+TGG | 0.477768 | 5.1:+4633548 | MS.gene20348:CDS |
| AATAGAGAGGATGGAGAGCT+TGG | 0.480322 | 5.1:+4633184 | MS.gene20348:CDS |
| AATCTTGGGGCCAATTTCAA+CGG | 0.483426 | 5.1:+4633244 | MS.gene20348:CDS |
| ACCTCTACCGGGGAAGGAGA+TGG | 0.487897 | 5.1:-4632544 | None:intergenic |
| GGTGGAAGTTGTTTGAATGC+TGG | 0.490886 | 5.1:+4630228 | MS.gene20348:CDS |
| AGGGCTCGTGTTCTAGGTGG+TGG | 0.492143 | 5.1:+4630210 | MS.gene20348:CDS |
| AGGGATGGATTATTGGAAGT+AGG | 0.496850 | 5.1:+4631180 | MS.gene20348:CDS |
| AGCAAAAGCAATAGAGAGGA+TGG | 0.501564 | 5.1:+4633175 | MS.gene20348:CDS |
| TGCACATGGAGTTGTATTCA+AGG | 0.503695 | 5.1:+4632309 | MS.gene20348:CDS |
| TATGATTACATCATAATTGG+TGG | 0.504417 | 5.1:+4629997 | MS.gene20348:CDS |
| GTTGTTGGCATTACCAACTT+TGG | 0.507784 | 5.1:+4632580 | MS.gene20348:CDS |
| TCATAAGTAAAGCCATTGTC+AGG | 0.509178 | 5.1:-4631210 | None:intergenic |
| GTTATGTTTGGGTTGCCATA+AGG | 0.509944 | 5.1:-4630096 | None:intergenic |
| GACCAAGAAGCTTTCAGGGG+TGG | 0.515957 | 5.1:+4633206 | MS.gene20348:CDS |
| ATATAAATGGGTGGAGAGAG+TGG | 0.516063 | 5.1:+4631116 | MS.gene20348:CDS |
| AGTAGTTAAATGTTACCAAA+GGG | 0.518064 | 5.1:-4633304 | None:intergenic |
| TCAGAAATGAATCGTTGAGC+AGG | 0.522804 | 5.1:-4630168 | None:intergenic |
| CCACTCAACATCAGAAGTTG+TGG | 0.523098 | 5.1:-4632415 | None:intergenic |
| TTATGTCCCATCTCCTTCCC+CGG | 0.526287 | 5.1:+4632537 | MS.gene20348:CDS |
| TTCAATGTAGCTGCCAAAGT+TGG | 0.526382 | 5.1:-4632593 | None:intergenic |
| CGATCCAAATGAGAACCCTT+TGG | 0.526890 | 5.1:+4633289 | MS.gene20348:CDS |
| TCAATGGCAATCAGCAGTTA+GGG | 0.526951 | 5.1:+4631161 | MS.gene20348:CDS |
| CAAAGTTGCCACCAAAGCAA+AGG | 0.531704 | 5.1:+4633138 | MS.gene20348:CDS |
| TGTAAACAAGATTCTATGAA+CGG | 0.532945 | 5.1:-4631352 | None:intergenic |
| CACTCAACATCAGAAGTTGT+GGG | 0.533196 | 5.1:-4632414 | None:intergenic |
| CATAGGGCATACTTGAAACA+AGG | 0.533526 | 5.1:+4632349 | MS.gene20348:CDS |
| CAAAGGGTTCTCATTTGGAT+CGG | 0.534900 | 5.1:-4633288 | None:intergenic |
| GCTAGCGGCACAACCTTCAC+AGG | 0.536422 | 5.1:+4632619 | MS.gene20348:CDS |
| CCTCTACCGGGGAAGGAGAT+GGG | 0.536487 | 5.1:-4632543 | None:intergenic |
| TTACTTATGATCATATTCAT+GGG | 0.537167 | 5.1:+4631223 | MS.gene20348:CDS |
| AATCGTTGAGCAGGAGAGGA+AGG | 0.537483 | 5.1:-4630159 | None:intergenic |
| TGCACGAGGGACAGAACATA+GGG | 0.539350 | 5.1:+4632333 | MS.gene20348:CDS |
| ATAGTATCCGCTGGTGCACT+AGG | 0.543415 | 5.1:+4632388 | MS.gene20348:CDS |
| GAAATGAGGGAAACCTCTAC+CGG | 0.544183 | 5.1:-4632556 | None:intergenic |
| TAATCATAGAAGGATATGAT+TGG | 0.545325 | 5.1:-4629982 | None:intergenic |
| TGGAGCAGCACATCACCTTA+GGG | 0.545444 | 5.1:+4632441 | MS.gene20348:CDS |
| AGGGAAACCTCTACCGGGGA+AGG | 0.546280 | 5.1:-4632550 | None:intergenic |
| GACTTAGAAAGATGCATACA+AGG | 0.549132 | 5.1:+4633341 | MS.gene20348:CDS |
| AGCTACATTGAAGCCGCTAG+CGG | 0.549192 | 5.1:+4632604 | MS.gene20348:CDS |
| AATGAATCGTTGAGCAGGAG+AGG | 0.550548 | 5.1:-4630163 | None:intergenic |
| TGGGATAGTGTTGCAGCCAA+AGG | 0.551223 | 5.1:-4630036 | None:intergenic |
| AAGATGGTGTTATCAACTCA+AGG | 0.552508 | 5.1:+4630190 | MS.gene20348:CDS |
| ACAGGTTCTCAAAGAGACTT+CGG | 0.553744 | 5.1:+4632637 | MS.gene20348:CDS |
| CATCAACCATTTGTAGGACA+AGG | 0.554122 | 5.1:+4632487 | MS.gene20348:CDS |
| AAGTAGTTAAATGTTACCAA+AGG | 0.554482 | 5.1:-4633305 | None:intergenic |
| TGGTGGTTGTCAAGTTGGTA+GGG | 0.555852 | 5.1:+4633553 | MS.gene20348:CDS |
| ATGCACGAGGGACAGAACAT+AGG | 0.556360 | 5.1:+4632332 | MS.gene20348:CDS |
| CGTCGATTACGCGCAATGCA+TGG | 0.559170 | 5.1:-4633607 | None:intergenic |
| TGTTTAGGCAATAAATTCAC+TGG | 0.560377 | 5.1:-4633464 | None:intergenic |
| ATTTCAAAGCCAATTGCACA+TGG | 0.562613 | 5.1:+4632295 | MS.gene20348:CDS |
| AACACTATCCCAAAATCATA+GGG | 0.567424 | 5.1:+4630047 | MS.gene20348:CDS |
| GCTGATTGCCATTGACGCAT+AGG | 0.567844 | 5.1:-4631153 | None:intergenic |
| CATGCATTGCGCGTAATCGA+CGG | 0.568080 | 5.1:+4633608 | MS.gene20348:CDS |
| GATTACATCATAATTGGTGG+TGG | 0.578599 | 5.1:+4630000 | MS.gene20348:CDS |
| CCACTGTTATGATGCTTGGA+AGG | 0.582795 | 5.1:+4633669 | MS.gene20348:CDS |
| TAATGCCAACAACAGAAATG+AGG | 0.587387 | 5.1:-4632570 | None:intergenic |
| CACTGATGTTGTGTTCCCTA+AGG | 0.592785 | 5.1:-4632456 | None:intergenic |
| GATTGCCATTGACGCATAGG+AGG | 0.594586 | 5.1:-4631150 | None:intergenic |
| AATGAGATCATAGTATCCGC+TGG | 0.596422 | 5.1:+4632379 | MS.gene20348:CDS |
| GTCTCTTTGAGAACCTGTGA+AGG | 0.597401 | 5.1:-4632632 | None:intergenic |
| GTTACGTACCTTACGTAGCG+AGG | 0.600055 | 5.1:-4630270 | None:intergenic |
| AATGCCAACAACAGAAATGA+GGG | 0.604668 | 5.1:-4632569 | None:intergenic |
| AAATGAGGGAAACCTCTACC+GGG | 0.605560 | 5.1:-4632555 | None:intergenic |
| TGGCAATCAGCAGTTAGGGA+TGG | 0.606730 | 5.1:+4631165 | MS.gene20348:CDS |
| ATGTTGTTAGTGAAGCTGGT+TGG | 0.608199 | 5.1:+4631070 | MS.gene20348:intron |
| ATTCATGGGACTAAGGTTGG+AGG | 0.610715 | 5.1:+4631237 | MS.gene20348:CDS |
| ATGACTATATGGCATTATCA+TGG | 0.611532 | 5.1:+4633533 | MS.gene20348:CDS |
| GTGCAAGCCCTCGCTACGTA+AGG | 0.617018 | 5.1:+4630262 | MS.gene20348:CDS |
| GAAGGAATCATATAAATGGG+TGG | 0.624947 | 5.1:+4631107 | MS.gene20348:CDS |
| ATCAGAAAGTGCAACACCAA+AGG | 0.626216 | 5.1:-4630130 | None:intergenic |
| GTAGGTGTATTGCCTGACAA+TGG | 0.628176 | 5.1:+4631198 | MS.gene20348:CDS |
| TGTGAAGGTTGTGCCGCTAG+CGG | 0.634172 | 5.1:-4632617 | None:intergenic |
| CCATAGCAAAAGCAATAGAG+AGG | 0.634747 | 5.1:+4633171 | MS.gene20348:CDS |
| AGCATCATAACAGTGGCTTG+AGG | 0.640568 | 5.1:-4633662 | None:intergenic |
| TAATTGGTGGTGGCACTGCA+GGG | 0.643965 | 5.1:+4630010 | MS.gene20348:CDS |
| CCTTCCAAGCATCATAACAG+TGG | 0.644107 | 5.1:-4633669 | None:intergenic |
| TGGGCTACCTAGTGCACCAG+CGG | 0.650652 | 5.1:-4632395 | None:intergenic |
| CCACAACTTCTGATGTTGAG+TGG | 0.651050 | 5.1:+4632415 | MS.gene20348:CDS |
| TTACGTACCTTACGTAGCGA+GGG | 0.652683 | 5.1:-4630269 | None:intergenic |
| CAAAAGAAGAGTAATTGTGT+TGG | 0.656681 | 5.1:-4631322 | None:intergenic |
| TCAAGGGCTCGTGTTCTAGG+TGG | 0.662204 | 5.1:+4630207 | MS.gene20348:CDS |
| AGATGGTGTTATCAACTCAA+GGG | 0.664790 | 5.1:+4630191 | MS.gene20348:CDS |
| ATAGGGCATACTTGAAACAA+GGG | 0.676597 | 5.1:+4632350 | MS.gene20348:CDS |
| GTTGTATTCAAGGATGCACG+AGG | 0.682935 | 5.1:+4632319 | MS.gene20348:CDS |
| TTGGACCAAGAAGCTTTCAG+GGG | 0.685396 | 5.1:+4633203 | MS.gene20348:CDS |
| AATGAGGGAAACCTCTACCG+GGG | 0.712968 | 5.1:-4632554 | None:intergenic |
| AAACAAGATTCTATGAACGG+TGG | 0.714085 | 5.1:-4631349 | None:intergenic |
| ACTATATGGCATTATCATGG+TGG | 0.730214 | 5.1:+4633536 | MS.gene20348:CDS |
| TAAATGGGTGGAGAGAGTGG+TGG | 0.737306 | 5.1:+4631119 | MS.gene20348:CDS |
| TTGTATTCAAGGATGCACGA+GGG | 0.759277 | 5.1:+4632320 | MS.gene20348:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATACATTATTAAATAGA+TGG | - | chr5.1:4631714-4631733 | None:intergenic | 10.0% |
| !!! | GTTGAATTTTTTTATTAATT+TGG | + | chr5.1:4633823-4633842 | MS.gene20348:intron | 10.0% |
| !!! | TTATTGGTTAAAATTAATAT+AGG | - | chr5.1:4630723-4630742 | None:intergenic | 10.0% |
| !! | ACATTGAATTATATATATAG+TGG | + | chr5.1:4631885-4631904 | MS.gene20348:intron | 15.0% |
| !! | TCAAAACCAAATAAATAATA+TGG | + | chr5.1:4632784-4632803 | MS.gene20348:intron | 15.0% |
| !!! | AAAAAAAGTTACAAAGTTTT+AGG | - | chr5.1:4630519-4630538 | None:intergenic | 15.0% |
| !!! | AATATTGTTATTTGTTAGTT+AGG | - | chr5.1:4632820-4632839 | None:intergenic | 15.0% |
| !!! | ATTATGTAGAATTTTAATGT+TGG | - | chr5.1:4630914-4630933 | None:intergenic | 15.0% |
| !!! | ATTTAGCACTATAATTTTAA+AGG | - | chr5.1:4632067-4632086 | None:intergenic | 15.0% |
| !!! | TAATATTTATTTTGTTGTCT+CGG | + | chr5.1:4632216-4632235 | MS.gene20348:intron | 15.0% |
| !! | AAAAATATCACGATTGAATA+AGG | - | chr5.1:4632935-4632954 | None:intergenic | 20.0% |
| !! | AAAATTCAAATTTCAAACTC+CGG | - | chr5.1:4631911-4631930 | None:intergenic | 20.0% |
| !! | AATTATGATGTAATCATAGA+AGG | - | chr5.1:4629995-4630014 | None:intergenic | 20.0% |
| !! | ACATTGTGAAGTATATTTAT+TGG | - | chr5.1:4631804-4631823 | None:intergenic | 20.0% |
| !! | ACCAAATAAATAATATGGTA+TGG | + | chr5.1:4632789-4632808 | MS.gene20348:intron | 20.0% |
| !! | ACCAATAAAAAAGTAAATGT+TGG | + | chr5.1:4630735-4630754 | MS.gene20348:intron | 20.0% |
| !! | AGCAATTTAAACAAAGATAA+AGG | - | chr5.1:4633770-4633789 | None:intergenic | 20.0% |
| !! | ATGTACAATATCATTTGTAT+GGG | + | chr5.1:4630446-4630465 | MS.gene20348:intron | 20.0% |
| !! | ATTTATCTTGATATAACAAG+AGG | - | chr5.1:4632038-4632057 | None:intergenic | 20.0% |
| !! | TAGGTATAAATCATTAGATT+TGG | - | chr5.1:4630353-4630372 | None:intergenic | 20.0% |
| !! | TATGTACAATATCATTTGTA+TGG | + | chr5.1:4630445-4630464 | MS.gene20348:intron | 20.0% |
| !! | TTACTATCAACTTTATATGT+AGG | - | chr5.1:4630372-4630391 | None:intergenic | 20.0% |
| !! | TTACTTATGATCATATTCAT+GGG | + | chr5.1:4631223-4631242 | MS.gene20348:CDS | 20.0% |
| !! | TTCTATGATTACATCATAAT+TGG | + | chr5.1:4629994-4630013 | MS.gene20348:CDS | 20.0% |
| !! | TTTACTTATGATCATATTCA+TGG | + | chr5.1:4631222-4631241 | MS.gene20348:CDS | 20.0% |
| !!! | ATAAAGTTGATAGTAAGTTT+TGG | + | chr5.1:4630376-4630395 | MS.gene20348:intron | 20.0% |
| !!! | ATTCATTCTAGAAAAAATCT+TGG | + | chr5.1:4633229-4633248 | MS.gene20348:CDS | 20.0% |
| !!! | CACTTAAATTTGTTATGTTT+GGG | - | chr5.1:4630110-4630129 | None:intergenic | 20.0% |
| !!! | CATTTTTATAGAGAAATTCA+TGG | + | chr5.1:4630545-4630564 | MS.gene20348:intron | 20.0% |
| !!! | GTCTTTAAAAAGTAATTCAT+AGG | - | chr5.1:4632743-4632762 | None:intergenic | 20.0% |
| !!! | TAAATTGCTATTTCACAAAT+TGG | + | chr5.1:4632131-4632150 | MS.gene20348:intron | 20.0% |
| !!! | TATTTTTTAGTTCACTTTGA+TGG | + | chr5.1:4631777-4631796 | MS.gene20348:intron | 20.0% |
| !!! | TCAATCGTGATATTTTTTAT+TGG | + | chr5.1:4632938-4632957 | MS.gene20348:intron | 20.0% |
| !!! | TCCAACATTTACTTTTTTAT+TGG | - | chr5.1:4630739-4630758 | None:intergenic | 20.0% |
| !!! | TTCATTCTAGAAAAAATCTT+GGG | + | chr5.1:4633230-4633249 | MS.gene20348:CDS | 20.0% |
| ! | AAGTAGTTAAATGTTACCAA+AGG | - | chr5.1:4633308-4633327 | None:intergenic | 25.0% |
| ! | AATAAACTATTCTCTCAAGA+TGG | + | chr5.1:4630298-4630317 | MS.gene20348:intron | 25.0% |
| ! | ACCACTAAATATAATTCACA+AGG | - | chr5.1:4631667-4631686 | None:intergenic | 25.0% |
| ! | ACCTTGTGAATTATATTTAG+TGG | + | chr5.1:4631663-4631682 | MS.gene20348:intron | 25.0% |
| ! | AGTAGTTAAATGTTACCAAA+GGG | - | chr5.1:4633307-4633326 | None:intergenic | 25.0% |
| ! | AGTGAAGGAATCATATAAAT+GGG | + | chr5.1:4631104-4631123 | MS.gene20348:CDS | 25.0% |
| ! | ATAACAAATTTAAGTGCCTT+TGG | + | chr5.1:4630114-4630133 | MS.gene20348:CDS | 25.0% |
| ! | CAAATATTACAAATGCAGAT+TGG | + | chr5.1:4633107-4633126 | MS.gene20348:intron | 25.0% |
| ! | GACATGTTTGTGTATTTAAA+TGG | - | chr5.1:4633410-4633429 | None:intergenic | 25.0% |
| ! | GATAATGATTATAAGGTTCT+TGG | + | chr5.1:4633581-4633600 | MS.gene20348:CDS | 25.0% |
| ! | GCCATACCATATTATTTATT+TGG | - | chr5.1:4632793-4632812 | None:intergenic | 25.0% |
| ! | TAATCATAGAAGGATATGAT+TGG | - | chr5.1:4629985-4630004 | None:intergenic | 25.0% |
| ! | TAGTGAAGGAATCATATAAA+TGG | + | chr5.1:4631103-4631122 | MS.gene20348:CDS | 25.0% |
| ! | TATCTGAAAACACAAGATAA+AGG | - | chr5.1:4633793-4633812 | None:intergenic | 25.0% |
| ! | TATGATTACATCATAATTGG+TGG | + | chr5.1:4629997-4630016 | MS.gene20348:CDS | 25.0% |
| ! | TGAATTATATATATAGTGGC+CGG | + | chr5.1:4631889-4631908 | MS.gene20348:intron | 25.0% |
| ! | TGTAAACAAGATTCTATGAA+CGG | - | chr5.1:4631355-4631374 | None:intergenic | 25.0% |
| ! | TTCACATAATCATCATTGAA+TGG | - | chr5.1:4632243-4632262 | None:intergenic | 25.0% |
| ! | TTTCGAAATTGTAAGATGTA+GGG | + | chr5.1:4631477-4631496 | MS.gene20348:intron | 25.0% |
| !! | ATCTTGTTTACAAAAAGCAA+AGG | + | chr5.1:4631363-4631382 | MS.gene20348:CDS | 25.0% |
| !! | ATTGAAGTATTTGTGTGTTT+AGG | - | chr5.1:4633482-4633501 | None:intergenic | 25.0% |
| !! | TCATTCTAGAAAAAATCTTG+GGG | + | chr5.1:4633231-4633250 | MS.gene20348:CDS | 25.0% |
| !! | TTGTGTTTTCAGATATCTTA+TGG | + | chr5.1:4633798-4633817 | MS.gene20348:intron | 25.0% |
| !! | TTTTCGAAATTGTAAGATGT+AGG | + | chr5.1:4631476-4631495 | MS.gene20348:intron | 25.0% |
| !!! | ACAAATTCTAAAATGTACCT+TGG | - | chr5.1:4632674-4632693 | None:intergenic | 25.0% |
| !!! | CAAATTCTAAAATGTACCTT+GGG | - | chr5.1:4632673-4632692 | None:intergenic | 25.0% |
| !!! | GCACTTAAATTTGTTATGTT+TGG | - | chr5.1:4630111-4630130 | None:intergenic | 25.0% |
| !!! | GGTTGTTGATAATGATTATA+AGG | + | chr5.1:4633574-4633593 | MS.gene20348:CDS | 25.0% |
| !!! | TATTTTTAAGTTCACCATGA+TGG | - | chr5.1:4631690-4631709 | None:intergenic | 25.0% |
| !!! | TTTTTATTAATTTGGTGTGC+AGG | + | chr5.1:4633831-4633850 | MS.gene20348:intron | 25.0% |
| AAAACAAGATATCTTGACGT+AGG | - | chr5.1:4631574-4631593 | None:intergenic | 30.0% | |
| AAATGAGTAAGTGCTAGAAA+AGG | - | chr5.1:4630639-4630658 | None:intergenic | 30.0% | |
| AACACTATCCCAAAATCATA+GGG | + | chr5.1:4630047-4630066 | MS.gene20348:CDS | 30.0% | |
| ATAGTGTCATGTTATGATGA+AGG | + | chr5.1:4631638-4631657 | MS.gene20348:intron | 30.0% | |
| ATGACTATATGGCATTATCA+TGG | + | chr5.1:4633533-4633552 | MS.gene20348:CDS | 30.0% | |
| ATTTATGTTGTTAGTGAAGC+TGG | + | chr5.1:4631066-4631085 | MS.gene20348:intron | 30.0% | |
| CAAAAGAAGAGTAATTGTGT+TGG | - | chr5.1:4631325-4631344 | None:intergenic | 30.0% | |
| CACAAATACTTCAATGTCTT+TGG | + | chr5.1:4633487-4633506 | MS.gene20348:CDS | 30.0% | |
| GGAAGGTAAAATATACAGTT+AGG | + | chr5.1:4633686-4633705 | MS.gene20348:intron | 30.0% | |
| TGTTTAGGCAATAAATTCAC+TGG | - | chr5.1:4633467-4633486 | None:intergenic | 30.0% | |
| TTATATTTAGTGGTCCATCA+TGG | + | chr5.1:4631673-4631692 | MS.gene20348:intron | 30.0% | |
| TTCCACTTATTCACCTTAAA+AGG | + | chr5.1:4631929-4631948 | MS.gene20348:intron | 30.0% | |
| TTGGGATGAAAAATTAGTGA+AGG | + | chr5.1:4631089-4631108 | MS.gene20348:CDS | 30.0% | |
| ! | AAATATATGAATGCCGACTA+TGG | - | chr5.1:4633039-4633058 | None:intergenic | 30.0% |
| ! | AATATATGAATGCCGACTAT+GGG | - | chr5.1:4633038-4633057 | None:intergenic | 30.0% |
| ! | ACCTTAAAAGGTACAATTCA+AGG | + | chr5.1:4631941-4631960 | MS.gene20348:intron | 30.0% |
| ! | TATAAAATCAATAAGGGTGC+CGG | + | chr5.1:4630663-4630682 | MS.gene20348:intron | 30.0% |
| !!! | TACCTTTTAAGGTGAATAAG+TGG | - | chr5.1:4631934-4631953 | None:intergenic | 30.0% |
| AAACAAGATTCTATGAACGG+TGG | - | chr5.1:4631352-4631371 | None:intergenic | 35.0% | |
| AATACAACTCCATGTGCAAT+TGG | - | chr5.1:4632307-4632326 | None:intergenic | 35.0% | |
| AATGCCAACAACAGAAATGA+GGG | - | chr5.1:4632572-4632591 | None:intergenic | 35.0% | |
| ACTATATGGCATTATCATGG+TGG | + | chr5.1:4633536-4633555 | MS.gene20348:CDS | 35.0% | |
| ATAGGGCATACTTGAAACAA+GGG | + | chr5.1:4632350-4632369 | MS.gene20348:CDS | 35.0% | |
| ATGCATCTTTCTAAGTCTCT+TGG | - | chr5.1:4633338-4633357 | None:intergenic | 35.0% | |
| ATTTCAAAGCCAATTGCACA+TGG | + | chr5.1:4632295-4632314 | MS.gene20348:CDS | 35.0% | |
| CAACACTATCCCAAAATCAT+AGG | + | chr5.1:4630046-4630065 | MS.gene20348:CDS | 35.0% | |
| CATACTTGAAACAAGGGATT+AGG | + | chr5.1:4632356-4632375 | MS.gene20348:CDS | 35.0% | |
| CATTGTGCATGATATCAAAC+AGG | + | chr5.1:4632265-4632284 | MS.gene20348:intron | 35.0% | |
| GAAGGAATCATATAAATGGG+TGG | + | chr5.1:4631107-4631126 | MS.gene20348:CDS | 35.0% | |
| GACTTAGAAAGATGCATACA+AGG | + | chr5.1:4633341-4633360 | MS.gene20348:CDS | 35.0% | |
| GATTACATCATAATTGGTGG+TGG | + | chr5.1:4630000-4630019 | MS.gene20348:CDS | 35.0% | |
| GGACATAAACAGAGTTCATT+GGG | - | chr5.1:4632525-4632544 | None:intergenic | 35.0% | |
| GGTACAATCTTTGACCAAAA+TGG | + | chr5.1:4631258-4631277 | MS.gene20348:CDS | 35.0% | |
| GTGAAGTGTAACCAAAAAAG+AGG | - | chr5.1:4632012-4632031 | None:intergenic | 35.0% | |
| GTGTTACATCAACCATTTGT+AGG | + | chr5.1:4632481-4632500 | MS.gene20348:CDS | 35.0% | |
| TAATGCCAACAACAGAAATG+AGG | - | chr5.1:4632573-4632592 | None:intergenic | 35.0% | |
| TCATAAGTAAAGCCATTGTC+AGG | - | chr5.1:4631213-4631232 | None:intergenic | 35.0% | |
| TCTACCTTTAATCATTCTCC+TGG | + | chr5.1:4633632-4633651 | MS.gene20348:CDS | 35.0% | |
| TGATCATATTCATGGGACTA+AGG | + | chr5.1:4631230-4631249 | MS.gene20348:CDS | 35.0% | |
| TGCATCTTTCTAAGTCTCTT+GGG | - | chr5.1:4633337-4633356 | None:intergenic | 35.0% | |
| TGTTCCAGGAGAATGATTAA+AGG | - | chr5.1:4633639-4633658 | None:intergenic | 35.0% | |
| ! | ATCCCAAAATCATAGGGTTT+TGG | + | chr5.1:4630053-4630072 | MS.gene20348:CDS | 35.0% |
| ! | CAACGATTCATTTCTGAAGA+TGG | + | chr5.1:4630174-4630193 | MS.gene20348:CDS | 35.0% |
| ! | CAAGGCACTAAATTACTTGA+CGG | + | chr5.1:4631959-4631978 | MS.gene20348:intron | 35.0% |
| ! | CACCAAAACCCTATGATTTT+GGG | - | chr5.1:4630058-4630077 | None:intergenic | 35.0% |
| ! | GCCTTGAATTGTACCTTTTA+AGG | - | chr5.1:4631945-4631964 | None:intergenic | 35.0% |
| !! | AAGATGGTGTTATCAACTCA+AGG | + | chr5.1:4630190-4630209 | MS.gene20348:CDS | 35.0% |
| !! | AATTTGGTGTGCAGGTATAT+GGG | + | chr5.1:4633839-4633858 | MS.gene20348:intron | 35.0% |
| !! | AGATGGTGTTATCAACTCAA+GGG | + | chr5.1:4630191-4630210 | MS.gene20348:CDS | 35.0% |
| !! | ATAAAATCAATAAGGGTGCC+GGG | + | chr5.1:4630664-4630683 | MS.gene20348:intron | 35.0% |
| !! | TAATTTGGTGTGCAGGTATA+TGG | + | chr5.1:4633838-4633857 | MS.gene20348:intron | 35.0% |
| !!! | AACTTCACTTGCCTCTTTTT+TGG | + | chr5.1:4631998-4632017 | MS.gene20348:intron | 35.0% |
| AATCTTGGGGCCAATTTCAA+CGG | + | chr5.1:4633244-4633263 | MS.gene20348:CDS | 40.0% | |
| AATGAGATCATAGTATCCGC+TGG | + | chr5.1:4632379-4632398 | MS.gene20348:CDS | 40.0% | |
| ACAGGTTCTCAAAGAGACTT+CGG | + | chr5.1:4632637-4632656 | MS.gene20348:CDS | 40.0% | |
| ACTATTCTCTCAAGATGGTC+AGG | + | chr5.1:4630303-4630322 | MS.gene20348:intron | 40.0% | |
| AGCAAAAGCAATAGAGAGGA+TGG | + | chr5.1:4633175-4633194 | MS.gene20348:CDS | 40.0% | |
| ATATAAATGGGTGGAGAGAG+TGG | + | chr5.1:4631116-4631135 | MS.gene20348:CDS | 40.0% | |
| ATGTTGTTAGTGAAGCTGGT+TGG | + | chr5.1:4631070-4631089 | MS.gene20348:intron | 40.0% | |
| CAAAGGGTTCTCATTTGGAT+CGG | - | chr5.1:4633291-4633310 | None:intergenic | 40.0% | |
| CACGGATTCTTTAATTGCAG+GGG | - | chr5.1:4632867-4632886 | None:intergenic | 40.0% | |
| CACTCAACATCAGAAGTTGT+GGG | - | chr5.1:4632417-4632436 | None:intergenic | 40.0% | |
| CATAGGGCATACTTGAAACA+AGG | + | chr5.1:4632349-4632368 | MS.gene20348:CDS | 40.0% | |
| CATATTCATGGGACTAAGGT+TGG | + | chr5.1:4631234-4631253 | MS.gene20348:CDS | 40.0% | |
| CATCAACCATTTGTAGGACA+AGG | + | chr5.1:4632487-4632506 | MS.gene20348:CDS | 40.0% | |
| CCATAGCAAAAGCAATAGAG+AGG | + | chr5.1:4633171-4633190 | MS.gene20348:CDS | 40.0% | |
| CTTCTGATGTTGAGTGGAAT+TGG | + | chr5.1:4632421-4632440 | MS.gene20348:CDS | 40.0% | |
| GACATTCCTTGTCCTACAAA+TGG | - | chr5.1:4632496-4632515 | None:intergenic | 40.0% | |
| GAGACACTGTGATGACTATA+TGG | + | chr5.1:4633522-4633541 | MS.gene20348:CDS | 40.0% | |
| GCACGGATTCTTTAATTGCA+GGG | - | chr5.1:4632868-4632887 | None:intergenic | 40.0% | |
| GGGACATAAACAGAGTTCAT+TGG | - | chr5.1:4632526-4632545 | None:intergenic | 40.0% | |
| GTTACCAAAGGGTTCTCATT+TGG | - | chr5.1:4633296-4633315 | None:intergenic | 40.0% | |
| GTTGTTGGCATTACCAACTT+TGG | + | chr5.1:4632580-4632599 | MS.gene20348:CDS | 40.0% | |
| GTTTCCCTCATTTCTGTTGT+TGG | + | chr5.1:4632565-4632584 | MS.gene20348:CDS | 40.0% | |
| TATCATGGTGGTTGTCAAGT+TGG | + | chr5.1:4633548-4633567 | MS.gene20348:CDS | 40.0% | |
| TCAATGGCAATCAGCAGTTA+GGG | + | chr5.1:4631161-4631180 | MS.gene20348:CDS | 40.0% | |
| TCAGAAATGAATCGTTGAGC+AGG | - | chr5.1:4630171-4630190 | None:intergenic | 40.0% | |
| TCCAAATGACCCGTTGAAAT+TGG | - | chr5.1:4633257-4633276 | None:intergenic | 40.0% | |
| TGAGTCACACAGAAAGTTGT+CGG | + | chr5.1:4630696-4630715 | MS.gene20348:intron | 40.0% | |
| TGCACATGGAGTTGTATTCA+AGG | + | chr5.1:4632309-4632328 | MS.gene20348:CDS | 40.0% | |
| TGCACGGATTCTTTAATTGC+AGG | - | chr5.1:4632869-4632888 | None:intergenic | 40.0% | |
| TGTGACTCATTTGTAAAGCC+CGG | - | chr5.1:4630685-4630704 | None:intergenic | 40.0% | |
| TGTGCATGATATCAAACAGG+TGG | + | chr5.1:4632268-4632287 | MS.gene20348:intron | 40.0% | |
| TGTTGTTAGTGAAGCTGGTT+GGG | + | chr5.1:4631071-4631090 | MS.gene20348:intron | 40.0% | |
| TTCAATGTAGCTGCCAAAGT+TGG | - | chr5.1:4632596-4632615 | None:intergenic | 40.0% | |
| TTCTTTAATTGCAGGGGAGT+CGG | - | chr5.1:4632861-4632880 | None:intergenic | 40.0% | |
| TTGTATTCAAGGATGCACGA+GGG | + | chr5.1:4632320-4632339 | MS.gene20348:CDS | 40.0% | |
| TTTCTAAGTCTCTTGGGTCT+TGG | - | chr5.1:4633331-4633350 | None:intergenic | 40.0% | |
| ! | ATCAGAAAGTGCAACACCAA+AGG | - | chr5.1:4630133-4630152 | None:intergenic | 40.0% |
| ! | CAGTGTGTCTTTGACCATTT+TGG | - | chr5.1:4631275-4631294 | None:intergenic | 40.0% |
| ! | GAGTATCGCAATCTTTGAGT+TGG | - | chr5.1:4630963-4630982 | None:intergenic | 40.0% |
| ! | GCACCAAAACCCTATGATTT+TGG | - | chr5.1:4630059-4630078 | None:intergenic | 40.0% |
| ! | TCTCATTTGGATCGGTGTTT+CGG | - | chr5.1:4633283-4633302 | None:intergenic | 40.0% |
| !! | AGCAGTTAGGGATGGATTAT+TGG | + | chr5.1:4631173-4631192 | MS.gene20348:CDS | 40.0% |
| !! | AGGGATGGATTATTGGAAGT+AGG | + | chr5.1:4631180-4631199 | MS.gene20348:CDS | 40.0% |
| !! | ATTGCTTTTGCTATGGCTTC+TGG | - | chr5.1:4633167-4633186 | None:intergenic | 40.0% |
| !! | CCTCTCTATTGCTTTTGCTA+TGG | - | chr5.1:4633174-4633193 | None:intergenic | 40.0% |
| !! | GTTATGTTTGGGTTGCCATA+AGG | - | chr5.1:4630099-4630118 | None:intergenic | 40.0% |
| !! | TCGCAATCTTTGAGTTGGAT+AGG | - | chr5.1:4630958-4630977 | None:intergenic | 40.0% |
| !! | TTGCTTTTGCTATGGCTTCT+GGG | - | chr5.1:4633166-4633185 | None:intergenic | 40.0% |
| AAATGAGGGAAACCTCTACC+GGG | - | chr5.1:4632558-4632577 | None:intergenic | 45.0% | |
| AATAGAGAGGATGGAGAGCT+TGG | + | chr5.1:4633184-4633203 | MS.gene20348:CDS | 45.0% | |
| AATGAATCGTTGAGCAGGAG+AGG | - | chr5.1:4630166-4630185 | None:intergenic | 45.0% | |
| AGCATCATAACAGTGGCTTG+AGG | - | chr5.1:4633665-4633684 | None:intergenic | 45.0% | |
| ATCTTGGGGCCAATTTCAAC+GGG | + | chr5.1:4633245-4633264 | MS.gene20348:CDS | 45.0% | |
| ATGTTTCCGCCAACTAAGCA+CGG | - | chr5.1:4631869-4631888 | None:intergenic | 45.0% | |
| ATTCATGGGACTAAGGTTGG+AGG | + | chr5.1:4631237-4631256 | MS.gene20348:CDS | 45.0% | |
| CAAAGTTGCCACCAAAGCAA+AGG | + | chr5.1:4633138-4633157 | MS.gene20348:CDS | 45.0% | |
| CAAGCCACTGTTATGATGCT+TGG | + | chr5.1:4633665-4633684 | MS.gene20348:CDS | 45.0% | |
| CACTGATGTTGTGTTCCCTA+AGG | - | chr5.1:4632459-4632478 | None:intergenic | 45.0% | |
| CCACAACTTCTGATGTTGAG+TGG | + | chr5.1:4632415-4632434 | MS.gene20348:CDS | 45.0% | |
| CCACTCAACATCAGAAGTTG+TGG | - | chr5.1:4632418-4632437 | None:intergenic | 45.0% | |
| CCACTGTTATGATGCTTGGA+AGG | + | chr5.1:4633669-4633688 | MS.gene20348:CDS | 45.0% | |
| CCTTCCAAGCATCATAACAG+TGG | - | chr5.1:4633672-4633691 | None:intergenic | 45.0% | |
| CGAATGTGAGATCCCATAGT+CGG | + | chr5.1:4633023-4633042 | MS.gene20348:intron | 45.0% | |
| CGATCCAAATGAGAACCCTT+TGG | + | chr5.1:4633289-4633308 | MS.gene20348:CDS | 45.0% | |
| CTTGGACCAAGAAGCTTTCA+GGG | + | chr5.1:4633202-4633221 | MS.gene20348:CDS | 45.0% | |
| GAAATGAGGGAAACCTCTAC+CGG | - | chr5.1:4632559-4632578 | None:intergenic | 45.0% | |
| GCCAATTTCAACGGGTCATT+TGG | + | chr5.1:4633253-4633272 | MS.gene20348:CDS | 45.0% | |
| GGATCTCACATTCGTGACAA+CGG | - | chr5.1:4633017-4633036 | None:intergenic | 45.0% | |
| GGTCAGGAGTAAGTCTACTA+TGG | + | chr5.1:4630319-4630338 | MS.gene20348:intron | 45.0% | |
| GGTGGAAGTTGTTTGAATGC+TGG | + | chr5.1:4630228-4630247 | MS.gene20348:CDS | 45.0% | |
| GTAGGTGTATTGCCTGACAA+TGG | + | chr5.1:4631198-4631217 | MS.gene20348:CDS | 45.0% | |
| GTCAATGGCAATCAGCAGTT+AGG | + | chr5.1:4631160-4631179 | MS.gene20348:CDS | 45.0% | |
| GTTGTATTCAAGGATGCACG+AGG | + | chr5.1:4632319-4632338 | MS.gene20348:CDS | 45.0% | |
| TCTTTAATTGCAGGGGAGTC+GGG | - | chr5.1:4632860-4632879 | None:intergenic | 45.0% | |
| TTACGTACCTTACGTAGCGA+GGG | - | chr5.1:4630272-4630291 | None:intergenic | 45.0% | |
| TTGGACCAAGAAGCTTTCAG+GGG | + | chr5.1:4633203-4633222 | MS.gene20348:CDS | 45.0% | |
| ! | ACACACTGCTGCTGATCTTT+TGG | + | chr5.1:4631287-4631306 | MS.gene20348:CDS | 45.0% |
| ! | CTTCGGAATGTTTTCTCCCA+AGG | + | chr5.1:4632654-4632673 | MS.gene20348:CDS | 45.0% |
| ! | GTCTCTTTGAGAACCTGTGA+AGG | - | chr5.1:4632635-4632654 | None:intergenic | 45.0% |
| !! | ATGGTGGTTGTCAAGTTGGT+AGG | + | chr5.1:4633552-4633571 | MS.gene20348:CDS | 45.0% |
| !! | TGCTTTTGCTATGGCTTCTG+GGG | - | chr5.1:4633165-4633184 | None:intergenic | 45.0% |
| !! | TGGTGGTTGTCAAGTTGGTA+GGG | + | chr5.1:4633553-4633572 | MS.gene20348:CDS | 45.0% |
| !! | TTAATATATAAAATCAATAA+GGG | + | chr5.1:4630657-4630676 | MS.gene20348:intron | 5.0% |
| !! | TTTAATATATAAAATCAATA+AGG | + | chr5.1:4630656-4630675 | MS.gene20348:intron | 5.0% |
| !!! | AAAATAAAAATCTATTTTTA+TGG | + | chr5.1:4632962-4632981 | MS.gene20348:intron | 5.0% |
| AACTCAAGGGCTCGTGTTCT+AGG | + | chr5.1:4630204-4630223 | MS.gene20348:CDS | 50.0% | |
| AATCGTTGAGCAGGAGAGGA+AGG | - | chr5.1:4630162-4630181 | None:intergenic | 50.0% | |
| AATGAGGGAAACCTCTACCG+GGG | - | chr5.1:4632557-4632576 | None:intergenic | 50.0% | |
| AGCTACATTGAAGCCGCTAG+CGG | + | chr5.1:4632604-4632623 | MS.gene20348:CDS | 50.0% | |
| ATAGTATCCGCTGGTGCACT+AGG | + | chr5.1:4632388-4632407 | MS.gene20348:CDS | 50.0% | |
| ATCCACCCCTGAAAGCTTCT+TGG | - | chr5.1:4633211-4633230 | None:intergenic | 50.0% | |
| ATGCACGAGGGACAGAACAT+AGG | + | chr5.1:4632332-4632351 | MS.gene20348:CDS | 50.0% | |
| CAACTAAGCACGGGACAACA+TGG | - | chr5.1:4631859-4631878 | None:intergenic | 50.0% | |
| CATGCATTGCGCGTAATCGA+CGG | + | chr5.1:4633608-4633627 | MS.gene20348:CDS | 50.0% | |
| CATGTTGTCCCGTGCTTAGT+TGG | + | chr5.1:4631857-4631876 | MS.gene20348:intron | 50.0% | |
| CGTCTGACTGCATGAATGCA+CGG | - | chr5.1:4632885-4632904 | None:intergenic | 50.0% | |
| CGTGCATTCATGCAGTCAGA+CGG | + | chr5.1:4632883-4632902 | MS.gene20348:intron | 50.0% | |
| GATTGCCATTGACGCATAGG+AGG | - | chr5.1:4631153-4631172 | None:intergenic | 50.0% | |
| GCTGATTGCCATTGACGCAT+AGG | - | chr5.1:4631156-4631175 | None:intergenic | 50.0% | |
| GCTTGGACCAAGAAGCTTTC+AGG | + | chr5.1:4633201-4633220 | MS.gene20348:CDS | 50.0% | |
| GTTACGTACCTTACGTAGCG+AGG | - | chr5.1:4630273-4630292 | None:intergenic | 50.0% | |
| TAAATGGGTGGAGAGAGTGG+TGG | + | chr5.1:4631119-4631138 | MS.gene20348:CDS | 50.0% | |
| TGCACGAGGGACAGAACATA+GGG | + | chr5.1:4632333-4632352 | MS.gene20348:CDS | 50.0% | |
| TGGAGCAGCACATCACCTTA+GGG | + | chr5.1:4632441-4632460 | MS.gene20348:CDS | 50.0% | |
| TGGCAATCAGCAGTTAGGGA+TGG | + | chr5.1:4631165-4631184 | MS.gene20348:CDS | 50.0% | |
| TGGGATAGTGTTGCAGCCAA+AGG | - | chr5.1:4630039-4630058 | None:intergenic | 50.0% | |
| TGTTTCCGCCAACTAAGCAC+GGG | - | chr5.1:4631868-4631887 | None:intergenic | 50.0% | |
| TTATGTCCCATCTCCTTCCC+CGG | + | chr5.1:4632537-4632556 | MS.gene20348:CDS | 50.0% | |
| TTGGAGCAGCACATCACCTT+AGG | + | chr5.1:4632440-4632459 | MS.gene20348:CDS | 50.0% | |
| TTTGGCCTCCTATGCGTCAA+TGG | + | chr5.1:4631145-4631164 | MS.gene20348:CDS | 50.0% | |
| ! | GTGGCTTGAGGATTTGTTCC+AGG | - | chr5.1:4633653-4633672 | None:intergenic | 50.0% |
| ! | TGGAGAGAGTGGTGGCATTT+TGG | + | chr5.1:4631127-4631146 | MS.gene20348:CDS | 50.0% |
| !! | ATAATTGGTGGTGGCACTGC+AGG | + | chr5.1:4630009-4630028 | MS.gene20348:CDS | 50.0% |
| !! | GAACGTGGTGGATCACCTTA+TGG | + | chr5.1:4630081-4630100 | MS.gene20348:CDS | 50.0% |
| !! | TAATTGGTGGTGGCACTGCA+GGG | + | chr5.1:4630010-4630029 | MS.gene20348:CDS | 50.0% |
| !!! | AGGGTTTTGGTGCTTGAACG+TGG | + | chr5.1:4630066-4630085 | MS.gene20348:CDS | 50.0% |
| !!! | GTTTTGGTGCTTGAACGTGG+TGG | + | chr5.1:4630069-4630088 | MS.gene20348:CDS | 50.0% |
| GACCAAGAAGCTTTCAGGGG+TGG | + | chr5.1:4633206-4633225 | MS.gene20348:CDS | 55.0% | |
| GCAGTCAGACGGTAGTCGTT+TGG | + | chr5.1:4632894-4632913 | MS.gene20348:intron | 55.0% | |
| GTTGTCCCGTGCTTAGTTGG+CGG | + | chr5.1:4631860-4631879 | MS.gene20348:intron | 55.0% | |
| ! | CGTCGATTACGCGCAATGCA+TGG | - | chr5.1:4633610-4633629 | None:intergenic | 55.0% |
| ! | TCAAGGGCTCGTGTTCTAGG+TGG | + | chr5.1:4630207-4630226 | MS.gene20348:CDS | 55.0% |
| ! | TCTGGGGTCCTTTGCTTTGG+TGG | - | chr5.1:4633149-4633168 | None:intergenic | 55.0% |
| ! | TGTGAAGGTTGTGCCGCTAG+CGG | - | chr5.1:4632620-4632639 | None:intergenic | 55.0% |
| !! | GCTTCTGGGGTCCTTTGCTT+TGG | - | chr5.1:4633152-4633171 | None:intergenic | 55.0% |
| ACCTCTACCGGGGAAGGAGA+TGG | - | chr5.1:4632547-4632566 | None:intergenic | 60.0% | |
| AGGGAAACCTCTACCGGGGA+AGG | - | chr5.1:4632553-4632572 | None:intergenic | 60.0% | |
| CCTCTACCGGGGAAGGAGAT+GGG | - | chr5.1:4632546-4632565 | None:intergenic | 60.0% | |
| GCTAGCGGCACAACCTTCAC+AGG | + | chr5.1:4632619-4632638 | MS.gene20348:CDS | 60.0% | |
| GTGCAAGCCCTCGCTACGTA+AGG | + | chr5.1:4630262-4630281 | MS.gene20348:CDS | 60.0% | |
| TGGGCTACCTAGTGCACCAG+CGG | - | chr5.1:4632398-4632417 | None:intergenic | 60.0% | |
| ! | AGGGCTCGTGTTCTAGGTGG+TGG | + | chr5.1:4630210-4630229 | MS.gene20348:CDS | 60.0% |
| ! | TGGCACTGCAGGGTGTCCTT+TGG | + | chr5.1:4630020-4630039 | MS.gene20348:CDS | 60.0% |
| CCCATCTCCTTCCCCGGTAG+AGG | + | chr5.1:4632543-4632562 | MS.gene20348:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4629961 | 4633907 | 4629961 | ID=MS.gene20348 |
| chr5.1 | mRNA | 4629961 | 4633907 | 4629961 | ID=MS.gene20348.t1;Parent=MS.gene20348 |
| chr5.1 | exon | 4629961 | 4630283 | 4629961 | ID=MS.gene20348.t1.exon1;Parent=MS.gene20348.t1 |
| chr5.1 | CDS | 4629961 | 4630283 | 4629961 | ID=cds.MS.gene20348.t1;Parent=MS.gene20348.t1 |
| chr5.1 | exon | 4631080 | 4631384 | 4631080 | ID=MS.gene20348.t1.exon2;Parent=MS.gene20348.t1 |
| chr5.1 | CDS | 4631080 | 4631384 | 4631080 | ID=cds.MS.gene20348.t1;Parent=MS.gene20348.t1 |
| chr5.1 | exon | 4632287 | 4632675 | 4632287 | ID=MS.gene20348.t1.exon3;Parent=MS.gene20348.t1 |
| chr5.1 | CDS | 4632287 | 4632675 | 4632287 | ID=cds.MS.gene20348.t1;Parent=MS.gene20348.t1 |
| chr5.1 | exon | 4633125 | 4633690 | 4633125 | ID=MS.gene20348.t1.exon4;Parent=MS.gene20348.t1 |
| chr5.1 | CDS | 4633125 | 4633690 | 4633125 | ID=cds.MS.gene20348.t1;Parent=MS.gene20348.t1 |
| chr5.1 | exon | 4633853 | 4633907 | 4633853 | ID=MS.gene20348.t1.exon5;Parent=MS.gene20348.t1 |
| chr5.1 | CDS | 4633853 | 4633907 | 4633853 | ID=cds.MS.gene20348.t1;Parent=MS.gene20348.t1 |
| Gene Sequence |
| Protein sequence |
