AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22076


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22076.t1 MTR_3g452710 97.358 530 4 1 1 520 1 530 0.0 1059
MS.gene22076.t1 MTR_3g452710 85.962 520 16 3 1 520 1 463 0.0 890
MS.gene22076.t1 MTR_2g100130 82.515 326 56 1 211 535 181 506 0.0 568
MS.gene22076.t1 MTR_2g100130 82.515 326 55 2 211 535 181 505 0.0 564
MS.gene22076.t1 MTR_2g100130 82.515 326 55 2 211 535 142 466 0.0 563
MS.gene22076.t1 MTR_2g100130 83.601 311 50 1 211 520 181 491 0.0 552
MS.gene22076.t1 MTR_2g100130 83.601 311 50 1 211 520 171 481 0.0 552
MS.gene22076.t1 MTR_2g100130 83.601 311 50 1 211 520 72 382 0.0 550
MS.gene22076.t1 MTR_2g100130 83.601 311 50 1 211 520 142 452 0.0 550
MS.gene22076.t1 MTR_2g100160 84.887 311 46 1 211 520 91 401 0.0 550
MS.gene22076.t1 MTR_2g100130 82.927 287 48 1 211 496 181 467 2.05e-177 509
MS.gene22076.t1 MTR_1g074880 44.664 253 133 4 252 503 33 279 2.59e-71 231
MS.gene22076.t1 MTR_1g074880 44.664 253 133 4 252 503 33 279 2.95e-71 231
MS.gene22076.t1 MTR_7g112870 41.429 280 156 5 226 503 8 281 1.41e-70 229
MS.gene22076.t1 MTR_7g116380 43.561 264 142 4 241 503 22 279 1.17e-69 226
MS.gene22076.t1 MTR_1g079950 42.803 264 144 4 241 503 22 279 1.25e-69 226
MS.gene22076.t1 MTR_7g116380 43.561 264 142 4 241 503 22 279 1.36e-69 226
MS.gene22076.t1 MTR_1g079950 42.803 264 144 4 241 503 22 279 1.41e-69 227
MS.gene22076.t1 MTR_1g079950 42.803 264 144 4 241 503 22 279 1.74e-69 226
MS.gene22076.t1 MTR_1g079950 42.803 264 144 4 241 503 51 308 2.08e-69 227
MS.gene22076.t1 MTR_5g081230 43.874 253 135 4 252 503 50 296 7.81e-69 224
MS.gene22076.t1 MTR_8g005010 42.857 252 137 4 253 503 32 277 7.88e-69 223
MS.gene22076.t1 MTR_8g098980 42.049 283 153 5 226 503 4 280 5.97e-68 222
MS.gene22076.t1 MTR_1g074880 47.534 223 114 3 282 503 4 224 4.13e-67 218
MS.gene22076.t1 MTR_1g074880 47.534 223 114 3 282 503 4 224 4.42e-67 218
MS.gene22076.t1 MTR_1g043240 41.897 253 140 4 252 503 33 279 1.77e-66 218
MS.gene22076.t1 MTR_1g079950 46.396 222 116 3 283 503 34 253 6.79e-65 214
MS.gene22076.t1 MTR_8g062430 44.934 227 120 4 279 503 50 273 1.63e-58 197
MS.gene22076.t1 MTR_8g085610 39.416 274 146 7 256 515 9 276 3.69e-58 195
MS.gene22076.t1 MTR_5g037200 44.493 227 121 4 279 503 50 273 3.71e-58 196
MS.gene22076.t1 MTR_7g107310 37.979 287 158 7 243 515 25 305 7.18e-58 195
MS.gene22076.t1 MTR_5g093990 38.849 278 162 5 232 507 4 275 7.60e-58 195
MS.gene22076.t1 MTR_8g085610 39.416 274 146 7 256 515 33 300 8.36e-58 195
MS.gene22076.t1 MTR_1g039380 43.307 254 136 5 254 505 1 248 9.33e-58 194
MS.gene22076.t1 MTR_1g039380 45.106 235 125 4 273 505 40 272 7.09e-57 192
MS.gene22076.t1 MTR_8g072600 35.457 361 172 11 222 521 70 430 2.51e-52 185
MS.gene22076.t1 MTR_2g087530 36.882 263 141 8 258 503 564 818 4.03e-41 159
MS.gene22076.t1 MTR_2g087530 36.604 265 143 8 256 503 675 931 9.34e-41 158
MS.gene22076.t1 MTR_1g089370 35.821 268 147 8 252 502 555 814 4.51e-40 155
MS.gene22076.t1 MTR_4g050540 36.226 265 144 8 256 503 680 936 1.72e-39 154
MS.gene22076.t1 MTR_8g072600 34.909 275 140 7 222 457 70 344 3.97e-37 140
MS.gene22076.t1 MTR_2g099710 32.958 355 151 17 225 519 177 504 8.32e-37 144
MS.gene22076.t1 MTR_5g037200 43.165 139 74 4 279 415 50 185 3.54e-28 112
MS.gene22076.t1 MTR_8g107280 42.105 114 66 0 11 124 479 592 5.75e-18 87.8
MS.gene22076.t1 MTR_5g009930 31.579 171 114 2 11 178 2 172 2.01e-17 83.6
MS.gene22076.t1 MTR_5g009930 31.579 171 114 2 11 178 2 172 3.15e-17 84.0
MS.gene22076.t1 MTR_1g030300 34.711 121 78 1 11 130 181 301 5.53e-17 84.0
MS.gene22076.t1 MTR_4g094205 44.340 106 59 0 7 112 484 589 1.65e-16 83.2
MS.gene22076.t1 MTR_1g084100 39.286 112 67 1 7 118 87 197 1.02e-15 80.1
MS.gene22076.t1 MTR_5g012030 39.216 102 62 0 11 112 2 103 1.73e-15 79.7
MS.gene22076.t1 MTR_5g012030 33.051 118 79 0 11 128 392 509 7.74e-14 74.7
MS.gene22076.t1 MTR_2g078020 30.469 128 89 0 6 133 457 584 3.88e-15 79.0
MS.gene22076.t1 MTR_2g078020 30.469 128 89 0 6 133 457 584 4.84e-15 78.6
MS.gene22076.t1 MTR_6g053290 31.818 132 86 1 11 142 2 129 6.06e-13 70.9
MS.gene22076.t1 MTR_6g053290 31.818 132 86 1 11 142 2 129 8.95e-13 70.1
MS.gene22076.t1 MTR_1g041435 33.628 113 75 0 14 126 14 126 1.06e-12 69.7
MS.gene22076.t1 MTR_4g102390 41.573 89 52 0 15 103 119 207 1.71e-12 69.7
MS.gene22076.t1 MTR_3g087480 34.043 94 62 0 12 105 223 316 1.70e-11 67.0
MS.gene22076.t1 MTR_7g059150 30.894 123 78 1 8 123 92 214 3.99e-11 64.3
MS.gene22076.t1 MTR_7g115280 33.613 119 79 0 10 128 334 452 5.74e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22076.t1 AT2G42810 79.808 520 98 4 3 520 5 519 0.0 840
MS.gene22076.t1 AT2G42810 79.576 519 100 3 3 520 5 518 0.0 840
MS.gene22076.t1 AT2G42810 74.324 518 76 4 3 520 5 465 0.0 782
MS.gene22076.t1 AT2G42810 74.324 518 76 4 3 520 5 465 0.0 782
MS.gene22076.t1 AT2G42810 74.324 518 76 4 3 520 5 465 0.0 782
MS.gene22076.t1 AT5G27840 42.391 276 151 5 230 503 16 285 8.87e-71 229
MS.gene22076.t1 AT5G27840 42.391 276 151 5 230 503 16 285 9.53e-71 230
MS.gene22076.t1 AT5G27840 42.391 276 151 5 230 503 16 285 1.07e-70 229
MS.gene22076.t1 AT5G27840 42.391 276 151 5 230 503 16 285 1.07e-70 229
MS.gene22076.t1 AT2G29400 43.922 255 137 3 252 506 50 298 1.18e-70 229
MS.gene22076.t1 AT5G59160 40.909 286 156 5 225 503 10 289 1.26e-70 229
MS.gene22076.t1 AT5G59160 40.909 286 156 5 225 503 10 289 1.26e-70 229
MS.gene22076.t1 AT5G59160 40.909 286 156 5 225 503 10 289 1.26e-70 229
MS.gene22076.t1 AT3G46820 40.909 286 156 5 225 503 10 289 1.68e-70 228
MS.gene22076.t1 AT2G39840 44.664 253 133 4 252 503 47 293 8.24e-69 224
MS.gene22076.t1 AT5G43380 43.083 253 137 4 252 503 33 279 1.18e-68 224
MS.gene22076.t1 AT5G43380 43.083 253 137 4 252 503 33 279 1.18e-68 224
MS.gene22076.t1 AT5G43380 43.083 253 137 4 252 503 33 279 1.26e-68 224
MS.gene22076.t1 AT3G05580 41.667 276 153 5 230 503 16 285 2.02e-68 223
MS.gene22076.t1 AT4G11240 43.478 253 136 4 252 503 34 280 1.37e-67 221
MS.gene22076.t1 AT1G64040 39.789 284 160 5 225 503 3 280 1.77e-65 216
MS.gene22076.t1 AT2G42500 37.829 304 166 8 226 515 11 305 1.72e-60 202
MS.gene22076.t1 AT4G26720 43.913 230 125 4 279 506 47 274 9.59e-60 200
MS.gene22076.t1 AT5G55260 38.989 277 161 5 232 506 4 274 2.50e-59 199
MS.gene22076.t1 AT1G10430 44.934 227 120 4 279 503 50 273 1.67e-58 197
MS.gene22076.t1 AT1G10430 44.934 227 120 4 279 503 50 273 1.67e-58 197
MS.gene22076.t1 AT1G59830 44.934 227 120 4 279 503 50 273 1.67e-58 197
MS.gene22076.t1 AT3G58500 37.143 280 168 5 228 506 11 283 2.44e-58 197
MS.gene22076.t1 AT3G05580 41.393 244 135 5 230 471 16 253 2.51e-58 195
MS.gene22076.t1 AT1G69960 44.493 227 121 4 279 503 51 274 1.70e-57 194
MS.gene22076.t1 AT1G50370 45.106 235 125 4 273 505 40 272 7.50e-57 192
MS.gene22076.t1 AT3G19980 44.255 235 127 4 273 505 40 272 2.29e-55 188
MS.gene22076.t1 AT5G63870 38.384 297 127 10 280 520 81 377 1.93e-53 187
MS.gene22076.t1 AT5G63870 38.384 297 127 10 280 520 81 377 1.93e-53 187
MS.gene22076.t1 AT5G55260 34.277 318 160 7 232 506 4 315 3.38e-52 181
MS.gene22076.t1 AT2G42500 38.866 247 136 5 283 515 13 258 2.89e-50 174
MS.gene22076.t1 AT1G59830 45.226 199 104 4 279 475 50 245 1.10e-49 172
MS.gene22076.t1 AT1G03445 39.474 304 152 11 225 503 446 742 9.02e-48 177
MS.gene22076.t1 AT1G03445 39.474 304 152 11 225 503 446 742 1.25e-47 177
MS.gene22076.t1 AT4G03080 39.419 241 125 7 280 503 581 817 7.24e-41 158
MS.gene22076.t1 AT2G27210 35.741 263 144 8 258 503 688 942 8.64e-38 149
MS.gene22076.t1 AT2G27210 35.741 263 144 8 258 503 683 937 1.04e-37 149
MS.gene22076.t1 AT1G48120 33.333 321 149 8 252 509 630 948 1.48e-37 149
MS.gene22076.t1 AT5G63870 37.963 216 100 6 280 461 81 296 1.75e-37 140
MS.gene22076.t1 AT1G08420 36.719 256 137 8 265 503 706 953 3.97e-37 147
MS.gene22076.t1 AT1G08420 36.719 256 137 8 265 503 701 948 4.46e-37 147
MS.gene22076.t1 AT5G10900 34.586 266 137 6 280 509 227 491 7.29e-35 139
MS.gene22076.t1 AT5G10900 34.586 266 137 6 280 509 227 491 7.63e-35 139
MS.gene22076.t1 AT5G10900 34.586 266 137 6 280 509 227 491 8.11e-35 139
MS.gene22076.t1 AT2G42500 42.056 107 59 2 279 382 57 163 8.04e-21 90.1
MS.gene22076.t1 AT2G42500 40.541 111 63 2 279 386 57 167 8.85e-21 90.5
MS.gene22076.t1 AT2G42500 42.056 107 59 2 279 382 57 163 1.14e-20 90.1
MS.gene22076.t1 AT3G17970 44.340 106 59 0 11 116 474 579 7.97e-16 80.9
MS.gene22076.t1 AT5G09420 39.344 122 70 1 7 128 484 601 8.69e-16 80.9
MS.gene22076.t1 AT1G62740 40.196 102 61 0 11 112 2 103 2.42e-15 79.3
MS.gene22076.t1 AT1G62740 30.508 118 82 0 11 128 382 499 1.52e-11 67.4
MS.gene22076.t1 AT4G11260 34.513 113 74 0 11 123 2 114 3.97e-15 77.4
MS.gene22076.t1 AT1G12270 36.667 120 76 0 11 130 2 121 1.32e-14 77.0
MS.gene22076.t1 AT1G12270 31.624 117 80 0 12 128 384 500 1.55e-11 67.4
MS.gene22076.t1 AT4G08320 35.043 117 75 1 11 126 175 291 1.45e-14 76.3
MS.gene22076.t1 AT1G56440 37.500 120 74 1 15 134 78 196 1.49e-14 76.6
MS.gene22076.t1 AT1G56440 37.500 120 74 1 15 134 88 206 1.60e-14 76.6
MS.gene22076.t1 AT4G08320 35.043 117 75 1 11 126 175 291 2.38e-14 75.5
MS.gene22076.t1 AT4G12400 40.196 102 61 0 11 112 2 103 3.48e-14 75.5
MS.gene22076.t1 AT4G12400 30.508 118 82 0 11 128 369 486 3.18e-11 66.2
MS.gene22076.t1 AT4G12400 40.196 102 61 0 11 112 2 103 3.53e-14 75.9
MS.gene22076.t1 AT4G12400 30.508 118 82 0 11 128 369 486 3.08e-11 66.2
MS.gene22076.t1 AT1G04190 35.833 120 76 1 2 120 5 124 4.04e-14 73.9
MS.gene22076.t1 AT4G22670 42.574 101 57 1 3 103 116 215 1.10e-13 73.6
MS.gene22076.t1 AT4G23570 30.282 142 93 2 33 168 24 165 1.48e-12 69.7
MS.gene22076.t1 AT4G23570 30.282 142 93 2 33 168 24 165 1.48e-12 69.7
MS.gene22076.t1 AT3G58620 26.446 121 89 0 6 126 444 564 4.50e-12 69.3
MS.gene22076.t1 AT3G58620 26.446 121 89 0 6 126 444 564 6.29e-12 68.9
MS.gene22076.t1 AT2G42580 30.328 122 83 2 7 128 216 335 2.20e-11 67.0
MS.gene22076.t1 AT4G23570 30.070 143 93 3 33 168 24 166 2.68e-11 65.9
MS.gene22076.t1 AT5G65160 29.508 122 86 0 13 134 472 593 3.71e-11 66.2
MS.gene22076.t1 AT5G10090 29.204 113 80 0 18 130 478 590 4.28e-11 65.9
MS.gene22076.t1 AT3G14950 34.167 120 77 1 12 131 259 376 5.04e-11 65.9

Find 113 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAACCTTTGAATATTT+AGG 0.215738 3.3:-39688231 None:intergenic
GTTACCTGATCGCAGTAATT+TGG 0.240189 3.3:-39694523 None:intergenic
TTGGTCTGCTGTTGGTCCTT+GGG 0.246842 3.3:+39691696 MS.gene22076:CDS
CGCTTGCTAGGTCCTCTTCC+AGG 0.271139 3.3:-39694283 None:intergenic
GTTGGTCTGCTGTTGGTCCT+TGG 0.283017 3.3:+39691695 MS.gene22076:CDS
TTCTTGAAGGATAATAATTT+AGG 0.289596 3.3:+39694346 MS.gene22076:CDS
GAAAATCCATATCTATTTAA+TGG 0.291516 3.3:+39693537 MS.gene22076:CDS
TCCTCTTCCAGGGAGAGGTT+GGG 0.296073 3.3:-39694272 None:intergenic
AGAAGGGGATACTATTACTT+TGG 0.310255 3.3:+39692589 MS.gene22076:CDS
TTTGTTGCATCAAGATCATT+TGG 0.321646 3.3:-39690046 None:intergenic
GTAATGTTGGGTTTCAAATC+AGG 0.336999 3.3:-39694722 None:intergenic
TATTCAGGAGCAAGAATAGA+AGG 0.343533 3.3:+39692572 MS.gene22076:CDS
ACCTATTGAACGGAAATCTA+TGG 0.344050 3.3:-39690161 None:intergenic
TGCTGTTGGTCCTTGGGGCA+TGG 0.350317 3.3:+39691702 MS.gene22076:CDS
CTGAAATCCGATCAATTAAT+CGG 0.356487 3.3:+39694097 MS.gene22076:CDS
CATCTTAGGCTCGAGGAATA+TGG 0.358933 3.3:+39688168 MS.gene22076:CDS
AACAGAAGTGCTTGCATAAA+CGG 0.363037 3.3:+39692645 MS.gene22076:CDS
GATGTCGAGCCACAGTATTC+AGG 0.365324 3.3:+39692557 MS.gene22076:intron
AAATCTATGGATTCAGCTAT+TGG 0.370862 3.3:-39690148 None:intergenic
ACACAAGCAATTGAGCTAAA+TGG 0.386922 3.3:+39688108 MS.gene22076:CDS
CCTCTTCCAGGGAGAGGTTG+GGG 0.387440 3.3:-39694271 None:intergenic
TCTATTTAATGGTGACTTTG+TGG 0.389007 3.3:+39693548 MS.gene22076:CDS
AGTATTCTGCTGTTTACCTT+TGG 0.392555 3.3:+39694005 MS.gene22076:CDS
TCCATAGATTTCCGTTCAAT+AGG 0.396664 3.3:+39690160 MS.gene22076:CDS
AGGTGCTGCTCATCTCGGGC+TGG 0.397594 3.3:+39688359 MS.gene22076:CDS
GTCCTCTTCCAGGGAGAGGT+TGG 0.400996 3.3:-39694273 None:intergenic
CGTGGTGTAGGCCTTTCTTT+CGG 0.405811 3.3:+39694304 MS.gene22076:CDS
AACATTTGTTGAACTATTTG+CGG 0.408597 3.3:+39693981 MS.gene22076:CDS
AAGTCACCATTAAATAGATA+TGG 0.408912 3.3:-39693543 None:intergenic
AAGAGCATGAACAAGATATA+TGG 0.417540 3.3:+39693925 MS.gene22076:CDS
TGTTGTTATAGGGTTACTAT+AGG 0.418812 3.3:+39688334 MS.gene22076:intron
AATGGTGACTTTGTGGATAG+AGG 0.418839 3.3:+39693555 MS.gene22076:CDS
AGCAGTGACAGTAGCAGTTA+TGG 0.421990 3.3:+39691616 MS.gene22076:CDS
AGGAAAGCGCCGCAATTCTT+CGG 0.427163 3.3:+39691571 MS.gene22076:intron
TGGTGGAGTAGCTGCAATAC+TGG 0.427651 3.3:+39691722 MS.gene22076:CDS
AGGCGCTTCAAATCGAATAA+AGG 0.429523 3.3:-39694702 None:intergenic
GGTGCTGCTCATCTCGGGCT+GGG 0.431866 3.3:+39688360 MS.gene22076:CDS
TGAGCTCAACGGGCTGCCTT+CGG 0.437951 3.3:+39693512 MS.gene22076:CDS
TCGGTGGGGATGTTACAAAA+AGG 0.445680 3.3:+39694323 MS.gene22076:CDS
TGCTCCAAATTACTGCGATC+AGG 0.446063 3.3:+39694519 MS.gene22076:CDS
GTGTAGGCCTTTCTTTCGGT+GGG 0.447700 3.3:+39694308 MS.gene22076:CDS
AGTAAAGGACGAGGGTTATG+AGG 0.450555 3.3:+39694462 MS.gene22076:CDS
TCTCGGGCTGGGAAAATTCA+AGG 0.456210 3.3:+39688371 MS.gene22076:CDS
AGGCGAGGTGCTGCTCATCT+CGG 0.458886 3.3:+39688354 MS.gene22076:CDS
GGCGAGGTGCTGCTCATCTC+GGG 0.462940 3.3:+39688355 MS.gene22076:CDS
GGTTGATGTGTGAGTTGCTA+TGG 0.470365 3.3:+39694242 MS.gene22076:CDS
TGGTGCATCTATACCTTCCT+CGG 0.471196 3.3:-39694133 None:intergenic
CACAAAACCGATTAATTGAT+CGG 0.472508 3.3:-39694104 None:intergenic
GGATTTCGTAAAGAAAATGA+TGG 0.477932 3.3:+39692610 MS.gene22076:CDS
CATTACTACATTTGCAGCAG+TGG 0.484793 3.3:+39694739 MS.gene22076:CDS
CAGTGGTGGTGATGTTGGTC+AGG 0.491022 3.3:+39691639 MS.gene22076:CDS
ATTGGACGCTTCACCGATCC+TGG 0.495364 3.3:-39690130 None:intergenic
TAACATCCCCACCGAAAGAA+AGG 0.498215 3.3:-39694315 None:intergenic
CTAGGTCCTCTTCCAGGGAG+AGG 0.499390 3.3:-39694277 None:intergenic
AATTGTGGTTGGTCTGCTGT+TGG 0.499758 3.3:+39691688 MS.gene22076:CDS
GGTGTAGGCCTTTCTTTCGG+TGG 0.499934 3.3:+39694307 MS.gene22076:CDS
AGGCCTACACCACGCTTGCT+AGG 0.500648 3.3:-39694295 None:intergenic
TGGTCTGCTGTTGGTCCTTG+GGG 0.503725 3.3:+39691697 MS.gene22076:CDS
TGATGCAACAAAGAAATTGA+AGG 0.507056 3.3:+39690057 MS.gene22076:CDS
CCCCAACCTCTCCCTGGAAG+AGG 0.510597 3.3:+39694271 MS.gene22076:CDS
TGCTGCAAATGTAGTAATGT+TGG 0.520819 3.3:-39694735 None:intergenic
CACTGCTGCTATGGCAACTT+CGG 0.523744 3.3:-39691600 None:intergenic
AGTGATCCCCAACCTCTCCC+TGG 0.523922 3.3:+39694265 MS.gene22076:CDS
TTTAAGTGCATGTCTCCATC+AGG 0.524892 3.3:+39693615 MS.gene22076:CDS
GTGTATATAGATCAATTGCA+TGG 0.529659 3.3:-39688089 None:intergenic
TGCTACTGTCACTGCTGCTA+TGG 0.532576 3.3:-39691609 None:intergenic
GGTGCATCTATACCTTCCTC+GGG 0.535421 3.3:-39694132 None:intergenic
GAAGAAGCTATTTCTGTACC+AGG 0.536670 3.3:+39690112 MS.gene22076:CDS
GGACCTAGCAAGCGTGGTGT+AGG 0.541640 3.3:+39694292 MS.gene22076:CDS
TATGGCAGTGGTGGTGATGT+TGG 0.544128 3.3:+39691634 MS.gene22076:CDS
AGCTATTTCTGTACCAGGAT+CGG 0.552634 3.3:+39690117 MS.gene22076:CDS
GCTGCTATGGCAACTTCGGT+TGG 0.553389 3.3:-39691596 None:intergenic
TTGTGGCGATGTGCATGGTC+AGG 0.553831 3.3:+39692856 MS.gene22076:CDS
ATCGTGCCTTTGCACATCTT+AGG 0.554055 3.3:+39688154 MS.gene22076:CDS
CACAATTGTAGCTACTATTG+TGG 0.556197 3.3:-39691672 None:intergenic
GCTGCAAATGTAGTAATGTT+GGG 0.558396 3.3:-39694734 None:intergenic
CTTTGAATGCTTCATTAGCA+AGG 0.559030 3.3:-39687710 None:intergenic
ATTCAGGAGCAAGAATAGAA+GGG 0.564418 3.3:+39692573 MS.gene22076:CDS
TCAAAATAGTACCTATTGAA+CGG 0.564875 3.3:-39690171 None:intergenic
ACAGTTATGTCGACAAGAGA+AGG 0.566155 3.3:-39692809 None:intergenic
GCTTGCTAGGTCCTCTTCCA+GGG 0.567459 3.3:-39694282 None:intergenic
TGTGCGATCTCATGAAGTAA+AGG 0.569085 3.3:+39694447 MS.gene22076:CDS
TCAGCTATATATCTAGCTAG+AGG 0.570449 3.3:+39693889 MS.gene22076:intron
ATCTCATGAAGTAAAGGACG+AGG 0.570634 3.3:+39694453 MS.gene22076:CDS
ATAGTAGCTACAATTGTGGT+TGG 0.570813 3.3:+39691677 MS.gene22076:CDS
CTTGCTAATGAAGCATTCAA+AGG 0.570823 3.3:+39687711 MS.gene22076:CDS
AGTTGATCCTAAATATTCAA+AGG 0.571712 3.3:+39688224 MS.gene22076:CDS
TCGTTTATCACATGAGCCAA+AGG 0.573998 3.3:-39694021 None:intergenic
GACAGTAGCAGTTATGGCAG+TGG 0.575800 3.3:+39691622 MS.gene22076:CDS
CGGTTGGCACCGAAGAATTG+CGG 0.579866 3.3:-39691580 None:intergenic
ACTGTTTGTGGCGATGTGCA+TGG 0.587689 3.3:+39692851 MS.gene22076:CDS
GTCGACATAACTGTTCCTCA+TGG 0.591645 3.3:+39692818 MS.gene22076:CDS
CAGCTATATATCTAGCTAGA+GGG 0.594475 3.3:+39693890 MS.gene22076:intron
TGTATATAGATCAATTGCAT+GGG 0.597547 3.3:-39688088 None:intergenic
TGTAGGCCTTTCTTTCGGTG+GGG 0.598927 3.3:+39694309 MS.gene22076:CDS
CACAATAGTAGCTACAATTG+TGG 0.602498 3.3:+39691673 MS.gene22076:CDS
CTCGAGCCTAAGATGTGCAA+AGG 0.604486 3.3:-39688160 None:intergenic
TTCAGGAGCAAGAATAGAAG+GGG 0.604663 3.3:+39692574 MS.gene22076:CDS
ATTCTTGCTCCTGAATACTG+TGG 0.606734 3.3:-39692566 None:intergenic
TGTTGGTCCTTGGGGCATGG+TGG 0.613632 3.3:+39691705 MS.gene22076:CDS
CTTTGCACATCTTAGGCTCG+AGG 0.615129 3.3:+39688161 MS.gene22076:CDS
GGAAGAGGACCTAGCAAGCG+TGG 0.624373 3.3:+39694286 MS.gene22076:CDS
ACTTAAATGCAAACAAAGTG+AGG 0.624984 3.3:-39693599 None:intergenic
TGCAATACTAGATGCTACAA+AGG 0.625792 3.3:+39688194 MS.gene22076:CDS
AGCTACTCCACCATGCCCCA+AGG 0.628173 3.3:-39691712 None:intergenic
TGAAGAGAATAATGTCGCAA+AGG 0.629106 3.3:+39687671 MS.gene22076:CDS
TTATAGGGTTACTATAGGCG+AGG 0.632884 3.3:+39688339 MS.gene22076:intron
GCATCTATACCTTCCTCGGG+AGG 0.634980 3.3:-39694129 None:intergenic
GTGCAAAGGCACGATTAGCA+AGG 0.640637 3.3:-39688146 None:intergenic
TTTCTGTAGATGGGTAACAA+AGG 0.644956 3.3:+39694677 MS.gene22076:intron
GGTTATGAGGTTGATCATGA+CGG 0.656315 3.3:+39694475 MS.gene22076:CDS
AGTAGCAGTTATGGCAGTGG+TGG 0.672118 3.3:+39691625 MS.gene22076:CDS
TCTCATGAAGTAAAGGACGA+GGG 0.727443 3.3:+39694454 MS.gene22076:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr3.3 gene 39687663 39694817 39687663 ID=MS.gene22076
chr3.3 mRNA 39687663 39694817 39687663 ID=MS.gene22076.t1;Parent=MS.gene22076
chr3.3 exon 39687663 39687732 39687663 ID=MS.gene22076.t1.exon1;Parent=MS.gene22076.t1
chr3.3 CDS 39687663 39687732 39687663 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39688076 39688245 39688076 ID=MS.gene22076.t1.exon2;Parent=MS.gene22076.t1
chr3.3 CDS 39688076 39688245 39688076 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39688345 39688416 39688345 ID=MS.gene22076.t1.exon3;Parent=MS.gene22076.t1
chr3.3 CDS 39688345 39688416 39688345 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39690031 39690181 39690031 ID=MS.gene22076.t1.exon4;Parent=MS.gene22076.t1
chr3.3 CDS 39690031 39690181 39690031 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39691573 39691743 39691573 ID=MS.gene22076.t1.exon5;Parent=MS.gene22076.t1
chr3.3 CDS 39691573 39691743 39691573 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39692558 39692666 39692558 ID=MS.gene22076.t1.exon6;Parent=MS.gene22076.t1
chr3.3 CDS 39692558 39692666 39692558 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39692760 39692877 39692760 ID=MS.gene22076.t1.exon7;Parent=MS.gene22076.t1
chr3.3 CDS 39692760 39692877 39692760 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39693489 39693636 39693489 ID=MS.gene22076.t1.exon8;Parent=MS.gene22076.t1
chr3.3 CDS 39693489 39693636 39693489 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39693893 39694141 39693893 ID=MS.gene22076.t1.exon9;Parent=MS.gene22076.t1
chr3.3 CDS 39693893 39694141 39693893 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39694242 39694367 39694242 ID=MS.gene22076.t1.exon10;Parent=MS.gene22076.t1
chr3.3 CDS 39694242 39694367 39694242 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39694440 39694540 39694440 ID=MS.gene22076.t1.exon11;Parent=MS.gene22076.t1
chr3.3 CDS 39694440 39694540 39694440 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
chr3.3 exon 39694686 39694817 39694686 ID=MS.gene22076.t1.exon12;Parent=MS.gene22076.t1
chr3.3 CDS 39694686 39694817 39694686 ID=cds.MS.gene22076.t1;Parent=MS.gene22076.t1
Gene Sequence

>MS.gene22076

ATGGCAACTGAAGAGAATAATGTCGCAAAGGCTGAAGAATTTAAAGTCCTTGCTAATGAAGCATTCAAAGGTAATTAATAAACATTCAGACTTTTTTTTAATGATACGATGATTCATTTACTAGTTGTAACATCACAATTGTTTTTGTTACAACTTAAATTTTAACTGAATCATTGAATCTGGCTCAATTTGATGAGTAACACTTTCATACTTAATTGTTGGTTATCACATAATTAGAGCAAATATCATGTGATTTATTCTGAAATTTATGTCTTATGTTTCCACCTACACATTATTGAACATGGTGATGCTGCATATAAGAAAGAGAGACTATGAATGGTTTTTTCAATGACCTATTGCTTTAACACTTTCACTTACCAGCATTTGCTGATCCTGTGAATTCCTTTTTTCAGAACGGAAATTTGCCCATGCAATTGATCTATATACACAAGCAATTGAGCTAAATGGTCAAAATGCAGTTTACCTTGCTAATCGTGCCTTTGCACATCTTAGGCTCGAGGAATATGGTAGTGCAATACTAGATGCTACAAAGGCTATCGAAGTTGATCCTAAATATTCAAAGGTTCTTCAACTCCTAAAACTTTAGACACTCTCCTCTGTATTTAGTTATCATTAATAATAATATTTGATTCAACCAATTATGCTTTTTTTGTTGTTATAGGGTTACTATAGGCGAGGTGCTGCTCATCTCGGGCTGGGAAAATTCAAGGAAGCATTGAAAGATTTTCAGCAGGTACTATATAAGTATAAATGTCTGTTGTCTTAACAAGGTTGGAATAAGGAGCATGGTCCAAAAAGAACATGTTTGTATTAGTAATCAGTTGCAATGCATTATTGGAGAACATTAATAGATCAATATTCATAGCCTTTTCATTAGGCATATATATAATAGTGATACCAAGCAGAAAGAATATCGGAGAATGTAAATCAGTTTCTCTAAAGTAAAGTAAACCATTTAGAATATTTTATAAAACACAGTTAATTTCAGTATTTTTAGAGAAACTAACAATAAATAGGTACTATTCACTGAATATATGCTCAGTAGTTTTTTCTGGTCTGATATCAGTCCAAAATAAGGGTTACAGCTACCGTTAACGAAGGAAAAGAAAGAGCAGAGCAAAAAAGAGAAAGATGTTGAAGGCATTGTTTTTAAAAATGTCAAGAGAGTGTGGTTATGATGTATAAATAAAATAAAGGAAGGGAGGTTGCAAACATTCACATTCTATCATCAGGGGATTCCTTCCTTTTGATATTCTAATAAAATATAGGTTCCAATCTACTAGTATTAGAGGTCTGATCTTGTAGTGCGGGTATTGTATCTTGAAAATGATTATAACGTTTATTGGAAAGAAGGCGTATTGGTGGCTTGTCAATGAAATTAATATTTCGAGGCCATCAGAGAACTTGAGGAGAAGCAATGATAGGTTGTGATGGCGCTGAGAGGGGGAGGTCTCAAATGGTGGTTTTGTTGTGAAGAGATCAAGCTAAAGTGCATCATGATGGACATTTTAGAAGACATTGCTCAAGCGGTTTCAACTGAAATTTGAGGAAATTCCTGTTAGGTTTAAAAACTGCCATTAGGTTAGAGGAAATTACTATCTGGAGCCCTTAGGGTAAGTAGAAGCTGCCATGTGAACCCACATTTTAACTCGAATAATGAAAGTTTAAAAAGGCAAAATTGCACCATGGGTCCTTTATCTTTTTTTTTTTTTTTTTGTAACAATGTAGTTCTTTTTAATTTGTGTCAAGTTAGTACTTTATGTTTAAAAATGTCAGCATTGTTGGATTGAACCTCATTTTTCATCCATGCATGTTATCAAAAGTCTTACTTAACCATTCAAAGAGGTAAATTACGTCATCTATCCTTAACAATAACATGTAAATTACAACAAAATATCAGTTGCAATTCTTAGTCCATCAAATGCAACTTGATCATATTTATCTATGATTGTGGTCTCCTTGTTGTCAACTCGGGTATAACAATGGTGCTGAGGGATGAAACATTCTTTGTAGTAAATCGTTTAATGATTGCTAACACGTTTTTAAATTGATTGAATCTGATAATTCTTCATGTTCAACAACCTTATTTAAATGTTCTCACATGATAGTCATCTGCTCATTGAAGCAGATAATTCTTTGACTTTGACGTTTAAAGTTGTCACACATTCTTGATATTTCTGTTTTATTGGTACCTTATTTGGAAAATCTTTTAAGCCAAACTCTAATTTAGGTTTTTACTTCAAATTAACTTTGACTACCTTGTTTTATTTTTTTGTTTAGTAATATCTACTTGTTTCAATCTGTAAACGTATGTCTGATATGATATGCTTACACTTATATTGACCAGGTCAAGAAAATGTGTCCAAATGATCTTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCTGTTATGAAGCTGAAATTTGAAGAAGCTATTTCTGTACCAGGATCGGTGAAGCGTCCAATAGCTGAATCCATAGATTTCCGTTCAATAGGTACTATTTTGAATATGTTATGCTAATATCTTCGTTTTATCATTTTTTCCTTTCTAAATCTCCCTCGCAATTTTTTTTTTTGTGTTTGACTATCTCATGATTCAGCCATGCCATGTTATAACTTTTTGTATGTTTTGGATCTGTGCTTCAATATTGTATACTTCAAACAGCATGCCATATTGGAGTAACTGTAGATTTTTAATTGTTTGAATTTTGAAAGTTTGGTACTAGGTCTAAAGTTATGCATATCTTTTGACCTTGAGTTGGTGTTATTTCATATATCGATGCATGTTTTCAAGGATCCTGATATCATTGATGTGAAAAATGAAGTAATGTTTATTGTCATTTTTCAATAATAAAGTTATGGATGTGACTTTTGGTTTTTGATTAGATTATTTGACATGTCTCCTCATATAATTGTACTGCTGATGCGATTTCCTTCTTTGATTCACGGGAAAGATTAGATGGAGTAATGTCAATTAATGTTTAGTTTCAATTTATAGTTTTATTCGTTTGCATGCCTTTTGGCAAAATTTGAATAGGCTATGGATATATATATTCTTTGATTAAGTAGTAGTGATGATAGTGGTCTGAGTAAGAATGAGAAGAGGTTAATGACCATTTTACTATTAACTTTGGAATTTGTAACTTCCCAAGTTCTTGGCTGCGTATTTAAATCCTTGAAATCATGTGTTTTCAATCATAGTCAGAAAGATATGAAATATGAGGTTGATGCCTTGATGGAGAAGGAAGAAGGGCAAAGTGGAGGAATATGCTCTCAGCTTGAAAATAAATGAATACCAAAACATCAAGTTATTGCAACCATCCTATGCTTAAACTTTAATCTACAACCAAAGTAACCACGGCATAGAAAACTTCTGTCATCACGAACTTATAAGTAAATTATTGATTGAATTAACTTGATACTTGGTTGACCAATATGTGAACTAAAATGGAACACATTAACAAATGGATAATTTTTTGTCTCCTTCACCTGTAGACTTCAGCTTTGTGGCCTTGTGTTTCTTTCTCTTACCTTCCTTTTAATTGGTTGTTTACATTTTCAAAGGCAGAAAATTTAAAAAATAAAATAATTATTAGGATATTTACCAGTAGTTTTGAGTCTTGTGTTTGAAGAACATGCCTTACAAGTATAAAATCTATTAAATGATCACTTTTCCCATCTTTTTACCACCTATTTGTTGATATATAGGTTTTTTTTCCCTCCTAGTCAATAGTAGTCCCCTCATGTTCCATGACATACCCTAATCATCCGTTATTTTCCTCACAAACCTTTCCACAAGTACTAGAGTGTAGAGACATTTTTTTGCTTGTTGGTTTTTAGATGTTGGCATACTTCACTATAAATTATCACTCTTGTATCATTATAGGAAAGCGCCGCAATTCTTCGGTGCCAACCGAAGTTGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTGATGTTGGTCAGGACATCAAAGACCACAATAGTAGCTACAATTGTGGTTGGTCTGCTGTTGGTCCTTGGGGCATGGTGGAGTAGCTGCAATACTGGTACATTTAGGAGTCATTTACAAGACCTAGGTATAACCTTATCAAACAAGACCTAAAAACAAGTCAAGTGGAATCATTATCAGTACTGCATTAGGAAATAAACCGTTCTAATGCAACACATTTCTTTATATTGTTTTTTTAGATCTAGTTAATCCCTATTCTGCCTAAGAAATGAAAGGCCATGTCGTGTGTCTTAGATATTAGTTCATTAGAATGTGTTTATTACCCTTCTTAGGCGTTCTGAAACCAAATAGGATGATGCCTTTGGACATACTGCTGTGTTTCAAATTTTAGTATGTTTTCAAATTCTACTAATAAGGATAGTGGATACTATGTACTTTTCAGTTTGCTTGTACGAATATATTTTATCTAAAACTGAAAGAGGAAAGAGCATAAACCATCTACGCATTCCGTAAACAAATAAAGAAAATATATATGTTGTGTGTATTTCTTATTATTTTCAGCTGCTTGCAAACTTGTTTGAATTTTTTCTTGTGATTTTCAATTACTGCCTGGATTGGCATCTAAAAACTATGGCTGCCTATTTTGAAGATTGTTGCGTATGTATTTTTTATAGATGTATTCGGATTTAACAGGGATTCAAATTGTAATTTATATGTTCTTTAACCCCTCTTTAGTATTAACGGTTTTCGGGACCAATAAACATACCTGTTAATTTTACGGTTTTCAGTGGTCCTTAATATTCATAACCTTTTTTTGTATATTTTGTTATTAAGTTAATTTTGTGTTCCCTTGTAGCATTTGATTTCACTCGCTGACATGAAAATATTTTGTTTTTTTATTTCAATAATAGATGTCGAGCCACAGTATTCAGGAGCAAGAATAGAAGGGGATACTATTACTTTGGATTTCGTAAAGAAAATGATGGATGATTTCAAGAAACAGAAGTGCTTGCATAAACGGTACTGAACGAAGAATTTTCGTTGTATAACTGTTTCTACTGTCTTGAAGTGTTATTGAAGTGTATTTGCATTTGTCCTGGTTCATTGTTTTAGGTATGCATTCCAGATTGTGTTGCAAACAAAAGAGATGTTGCAAGCTTTGCCTTCTCTTGTCGACATAACTGTTCCTCATGGAAAACATTTTACTGTTTGTGGCGATGTGCATGGTCAGGTAATTGGTTTATTATATGGTAAAACAAATTGTATTTGTTGCTAATATCTTCAAGGTGGCTTTTTGTTACATAAATATTTAGAGGATAGAGTTGTTCTCACGTCATCTTTGATTTTTCAAAACATTCTTCATAAAGTTAATTTCTTTGACCATTATATGGAGACTGGGGAGCTATTTTTTGTTGATGAAGAGCTTGTTAGTTAATATTTTATTTGTGCCTCATTTGTACGAAGGATTTAACTTCCGTGTTGAATTTTTATTTTAAATCCAGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATGATAAAAATGTAATTTTATTAGAAGTTTAAAAGAAAACAAGCACAGAAACATGGAAATGAAATCCTACTTATGGAGAACGGGTGAAAATAAAGAAAAGCAAAAAGAAAGCGTCATTTTAACGTTTGACAAGGAAATCTATTAAAAAAAAGACTGTATCCCATACAAGAGGTTGCTGCGAGAATTTGTCCTATAAAATCATGATTTTCATGTTACTCGGCTTTTGTGATGTATTTATTTTCTTTAATTATCAACCCTTTCAATTTTATTTTTGATGACTCCTGCAGTTCTATGATCTTCTGAATATTTTTGAGCTCAACGGGCTGCCTTCGGAAGAAAATCCATATCTATTTAATGGTGACTTTGTGGATAGAGGATCGTTTTCTTTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGGTAAACCCTAGCTCTTTCTTTATTAAGCCTGTTAGGTTTCATTATACTATTTTTGATATATCATGGATTATTTAGTTATTATTATTTCATAATCACCTGATTAGATGCTTAATGTATTACTTCATTTTTTTCAATTAAATTGTATAACCAATAATGTTTATTGTGTGATTTGATTTTTCGTAAATATTTATATACTTTTTTCAATTCACTCAGTTAGCTGGTGTTGTAACTTGTTTTGTTTCTATGTTATTTTCAGCTATATATCTAGCTAGAGGGAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGAAACATTTGTTGAACTATTTGCGGAAGTATTCTGCTGTTTACCTTTGGCTCATGTGATAAACGACAAAGTTTTCGTAGTCCATGGGGGTCTTTTCAGTGTTGATGGGGTCAAACTCTCTGAAATCCGATCAATTAATCGGTTTTGTGAGCCTCCCGAGGAAGGTATAGATGCACCATTTTTTTCTTCTTCAAATGATCTCATAATTTACACATTCTTGCATTTCATCATAGTTTTGTTTATGTTTATGTTTGTTATGTGTAGGGTTGATGTGTGAGTTGCTATGGAGTGATCCCCAACCTCTCCCTGGAAGAGGACCTAGCAAGCGTGGTGTAGGCCTTTCTTTCGGTGGGGATGTTACAAAAAGGTTCTTGAAGGATAATAATTTAGGTATGTTTTCCATTGGTTTGATACTTAATTTCTTATTTCATCAGTGACTTCATATGAATTATCACTTTCCAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAGGTTGATCATGACGGTAAACTCATAACTGTATTTTCTGCTCCAAATTACTGCGATCAGGTAACCCTATCCCTTTTGTTACAACCTTCTTTCTTGAATAATTTTACGGTGACCGTGCCACACACTTCTTATATTAATGTATTTAAGCAATCACTTATCCTCCTATGAAGGTATCTATATGCTGATTTTTCATTGTTTTCTGTAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCGCCTGATTTGAAACCCAACATTACTACATTTGCAGCAGTGGTTAGTATCTTTCTTGTTTTGAAGTTTGTCACGCTATATCATGTATTATCGTTTTAA

Protein sequence

>MS.gene22076.t1

MATEENNVAKAEEFKVLANEAFKERKFAHAIDLYTQAIELNGQNAVYLANRAFAHLRLEEYGSAILDATKAIEVDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDLDATKKLKECEKAVMKLKFEEAISVPGSVKRPIAESIDFRSIGKRRNSSVPTEVAIAAVTVAVMAVVVMLVRTSKTTIVATIVVGLLLVLGAWWSSCNTDVEPQYSGARIEGDTITLDFVKKMMDDFKKQKCLHKRYAFQIVLQTKEMLQALPSLVDITVPHGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINDKVFVVHGGLFSVDGVKLSEIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLKDNNLDLVVRSHEVKDEGYEVDHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNITTFAAVVSIFLVLKFVTLYHVLSF