Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22109.t1 | RHN66888.1 | 88.8 | 276 | 26 | 1 | 1 | 276 | 59 | 329 | 1.80E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22109.t1 | Q9S728 | 65.5 | 116 | 36 | 1 | 166 | 277 | 191 | 306 | 7.8e-40 | 165.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22109.t1 | G7ZWV1 | 88.8 | 276 | 26 | 1 | 1 | 276 | 1 | 271 | 1.3e-72 | 282.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene22109 | 0.855408 | 6.44E-62 | -1.69E-46 |
| MS.gene050100 | MS.gene22109 | 0.809206 | 2.12E-50 | -1.69E-46 |
| MS.gene050206 | MS.gene22109 | 0.805951 | 1.04E-49 | -1.69E-46 |
| MS.gene050298 | MS.gene22109 | 0.84179 | 3.84E-58 | -1.69E-46 |
| MS.gene050563 | MS.gene22109 | 0.882867 | 7.26E-71 | -1.69E-46 |
| MS.gene050584 | MS.gene22109 | 0.886863 | 2.36E-72 | -1.69E-46 |
| MS.gene050585 | MS.gene22109 | 0.871438 | 6.84E-67 | -1.69E-46 |
| MS.gene050587 | MS.gene22109 | 0.923112 | 4.08E-89 | -1.69E-46 |
| MS.gene05143 | MS.gene22109 | 0.874681 | 5.59E-68 | -1.69E-46 |
| MS.gene051789 | MS.gene22109 | 0.855928 | 4.54E-62 | -1.69E-46 |
| MS.gene052142 | MS.gene22109 | 0.913513 | 5.64E-84 | -1.69E-46 |
| MS.gene052187 | MS.gene22109 | 0.821088 | 4.86E-53 | -1.69E-46 |
| MS.gene052456 | MS.gene22109 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene052698 | MS.gene22109 | 0.844251 | 8.49E-59 | -1.69E-46 |
| MS.gene053074 | MS.gene22109 | 0.843463 | 1.38E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene22109 | 0.914997 | 9.93E-85 | -1.69E-46 |
| MS.gene053563 | MS.gene22109 | 0.804209 | 2.41E-49 | -1.69E-46 |
| MS.gene05456 | MS.gene22109 | 0.933362 | 2.11E-95 | -1.69E-46 |
| MS.gene054596 | MS.gene22109 | 0.808206 | 3.47E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene22109 | 0.903175 | 4.55E-79 | -1.69E-46 |
| MS.gene057022 | MS.gene22109 | 0.834822 | 2.40E-56 | -1.69E-46 |
| MS.gene057881 | MS.gene22109 | 0.810761 | 9.82E-51 | -1.69E-46 |
| MS.gene058168 | MS.gene22109 | 0.800366 | 1.49E-48 | -1.69E-46 |
| MS.gene058918 | MS.gene22109 | 0.836832 | 7.42E-57 | -1.69E-46 |
| MS.gene059006 | MS.gene22109 | 0.889 | 3.58E-73 | -1.69E-46 |
| MS.gene059632 | MS.gene22109 | 0.849705 | 2.72E-60 | -1.69E-46 |
| MS.gene059768 | MS.gene22109 | 0.872127 | 4.04E-67 | -1.69E-46 |
| MS.gene060513 | MS.gene22109 | 0.822556 | 2.22E-53 | -1.69E-46 |
| MS.gene060691 | MS.gene22109 | 0.880479 | 5.31E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22109.t1 | MTR_3g089570 | 95.307 | 277 | 6 | 3 | 1 | 276 | 1 | 271 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22109.t1 | AT2G42840 | 56.742 | 178 | 54 | 5 | 118 | 277 | 134 | 306 | 1.34e-56 | 184 |
Find 108 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGGTTGGTGGGGAAATA+TGG | 0.109920 | 3.4:+43239640 | MS.gene22109:CDS |
| CTTACACAACTGACCAAGTT+AGG | 0.249344 | 3.4:+43239813 | MS.gene22109:CDS |
| GGACTCATCCAGGAATAATA+TGG | 0.312895 | 3.4:+43239612 | MS.gene22109:CDS |
| CAGTTGTGTAAGGGAACTTC+TGG | 0.313209 | 3.4:-43239802 | None:intergenic |
| GCAACTTACTTGCAAGTTCC+AGG | 0.317360 | 3.4:-43238846 | None:intergenic |
| CCTTCCCCATCTCCTTTCCC+TGG | 0.343338 | 3.4:+43238828 | MS.gene22109:CDS |
| GAAATATGGGAAATGCCTTT+GGG | 0.350660 | 3.4:+43239654 | MS.gene22109:CDS |
| GGAAATATGGGAAATGCCTT+TGG | 0.350960 | 3.4:+43239653 | MS.gene22109:CDS |
| AGAATTCCCCATATTATTCC+TGG | 0.352015 | 3.4:-43239620 | None:intergenic |
| TTTGGGGTGACTAATATTCC+AGG | 0.367636 | 3.4:+43239671 | MS.gene22109:CDS |
| TGCTTCATTCCTTAACTCCT+TGG | 0.367728 | 3.4:+43239775 | MS.gene22109:CDS |
| CCACTTGATGGAGGGTTTGA+TGG | 0.369108 | 3.4:-43238687 | None:intergenic |
| TCAACAGTGGTGGAGATTAC+AGG | 0.372775 | 3.4:-43238283 | None:intergenic |
| GGAATAATATGGGGAATTCT+AGG | 0.377925 | 3.4:+43239623 | MS.gene22109:CDS |
| TCTGGTTCACCAAGGAGTTA+AGG | 0.397130 | 3.4:-43239784 | None:intergenic |
| TTGTGTTGCAGCAGCCTTGT+TGG | 0.413820 | 3.4:-43239861 | None:intergenic |
| CTAGGTTGGTGGGGAAATAT+GGG | 0.416346 | 3.4:+43239641 | MS.gene22109:CDS |
| CCAGGATCTATTGGTGTTGA+TGG | 0.420551 | 3.4:-43238774 | None:intergenic |
| CTTCATTTGCCATCTTGAAA+AGG | 0.430225 | 3.4:-43239889 | None:intergenic |
| CTAACTTGGTCAGTTGTGTA+AGG | 0.430724 | 3.4:-43239812 | None:intergenic |
| GGTGGATCAGTTGGAGTTGA+TGG | 0.433463 | 3.4:-43238729 | None:intergenic |
| ACTCCAACACCACCTTCAAC+TGG | 0.433721 | 3.4:+43238594 | MS.gene22109:CDS |
| AAAGGTGGTGTAGGGACAGT+AGG | 0.438620 | 3.4:-43238801 | None:intergenic |
| GATGGTGTTGAAGGTGTAGA+AGG | 0.439428 | 3.4:-43238642 | None:intergenic |
| GGAGGGTTTGATGGTGTTGA+AGG | 0.443891 | 3.4:-43238678 | None:intergenic |
| GTAGGAGTGCCAGGATCTAT+TGG | 0.447810 | 3.4:-43238783 | None:intergenic |
| GACTCATCCAGGAATAATAT+GGG | 0.459996 | 3.4:+43239613 | MS.gene22109:CDS |
| GAAGGAAGGAAAGGTGGTGT+AGG | 0.461768 | 3.4:-43238810 | None:intergenic |
| TTTGATGGTGTTGAAGGTGT+TGG | 0.464631 | 3.4:-43238672 | None:intergenic |
| ATGCAAACCTGTCCCTAACT+TGG | 0.469578 | 3.4:-43239826 | None:intergenic |
| AACACAAGAACTGATGGTTT+AGG | 0.469650 | 3.4:+43239731 | MS.gene22109:CDS |
| TTATAGTATCCACCACTTGA+TGG | 0.470071 | 3.4:-43238699 | None:intergenic |
| GGATTATGTGATGGTGTTGA+AGG | 0.479211 | 3.4:-43238651 | None:intergenic |
| ATCAATTAATTTCATAGTCT+AGG | 0.491559 | 3.4:-43239923 | None:intergenic |
| CATCCAGTTGAAGGTGGTGT+TGG | 0.495066 | 3.4:-43238597 | None:intergenic |
| AAGGAAGGAAAGGTGGTGTA+GGG | 0.495495 | 3.4:-43238809 | None:intergenic |
| CAAGTTCCAGGGAAAGGAGA+TGG | 0.499509 | 3.4:-43238834 | None:intergenic |
| GGAAAGGAGATGGGGAAGGA+AGG | 0.502197 | 3.4:-43238824 | None:intergenic |
| GTAGGGACAGTAGGAGTGCC+AGG | 0.503622 | 3.4:-43238792 | None:intergenic |
| CTTTCCAACACAAGAACTGA+TGG | 0.504329 | 3.4:+43239725 | MS.gene22109:CDS |
| GGAGATGGGGAAGGAAGGAA+AGG | 0.504748 | 3.4:-43238819 | None:intergenic |
| ACTGTTGAAGATCCACATTC+AGG | 0.508660 | 3.4:+43238298 | MS.gene22109:CDS |
| GATGGGGAAGGAAGGAAAGG+TGG | 0.510684 | 3.4:-43238816 | None:intergenic |
| AAGCACTGTGAACATTGAAA+AGG | 0.512709 | 3.4:-43238230 | None:intergenic |
| TAATATGGGGAATTCTAGGT+TGG | 0.520470 | 3.4:+43239627 | MS.gene22109:CDS |
| AAGTTCCAGGGAAAGGAGAT+GGG | 0.522022 | 3.4:-43238833 | None:intergenic |
| AATATTCCAGGGTTTACTCC+TGG | 0.524426 | 3.4:+43239683 | MS.gene22109:CDS |
| TAAACCATCAGTTCTTGTGT+TGG | 0.525884 | 3.4:-43239729 | None:intergenic |
| TTACACAACTGACCAAGTTA+GGG | 0.525939 | 3.4:+43239814 | MS.gene22109:CDS |
| AGCTACTGGAGGACTCATCC+AGG | 0.526289 | 3.4:+43239602 | MS.gene22109:intron |
| TATGGGGAATTCTAGGTTGG+TGG | 0.528656 | 3.4:+43239630 | MS.gene22109:CDS |
| GAATATCCACATCCAGTTGA+AGG | 0.540702 | 3.4:-43238606 | None:intergenic |
| CAACTGACCAAGTTAGGGAC+AGG | 0.541089 | 3.4:+43239819 | MS.gene22109:CDS |
| ACACCACCTTCAACTGGATG+TGG | 0.541466 | 3.4:+43238600 | MS.gene22109:CDS |
| AGGAGTACTTCTCCATCTCA+TGG | 0.541512 | 3.4:+43238513 | MS.gene22109:CDS |
| GAACATTGAAAAGGAAACAT+AGG | 0.542372 | 3.4:-43238221 | None:intergenic |
| TACTTGCAAGTTCCAGGGAA+AGG | 0.543064 | 3.4:-43238840 | None:intergenic |
| AATGTCACTGGTGGATCAGT+TGG | 0.544923 | 3.4:-43238738 | None:intergenic |
| GATGGTGGTGTCAATGTCAC+TGG | 0.545935 | 3.4:-43238750 | None:intergenic |
| GAATCAGAGAAAACTGATGA+AGG | 0.547203 | 3.4:-43238325 | None:intergenic |
| GTTGGAAAGTGCTTGTGGTA+AGG | 0.554876 | 3.4:-43239711 | None:intergenic |
| CCATCAACACCAATAGATCC+TGG | 0.565654 | 3.4:+43238774 | MS.gene22109:CDS |
| CAACTTACTTGCAAGTTCCA+GGG | 0.565925 | 3.4:-43238845 | None:intergenic |
| GGTGGTGAGCTTCCATGAGA+TGG | 0.567793 | 3.4:-43238525 | None:intergenic |
| TTGGGGTGACTAATATTCCA+GGG | 0.568346 | 3.4:+43239672 | MS.gene22109:CDS |
| GGATCAGTTGGAGTTGATGG+TGG | 0.570978 | 3.4:-43238726 | None:intergenic |
| ATTGGTGTTGATGGAGATGG+TGG | 0.578943 | 3.4:-43238765 | None:intergenic |
| CCAGGGAAAGGAGATGGGGA+AGG | 0.579476 | 3.4:-43238828 | None:intergenic |
| AACATAATGCAGGCCCACAT+AGG | 0.579774 | 3.4:+43238493 | MS.gene22109:intron |
| GAAGGTGTTGGATTATGTGA+TGG | 0.585952 | 3.4:-43238660 | None:intergenic |
| GGTGATGAGCTTCCATGTGA+AGG | 0.591177 | 3.4:-43238546 | None:intergenic |
| ATGGGGAATTCTAGGTTGGT+GGG | 0.591873 | 3.4:+43239631 | MS.gene22109:CDS |
| AGTATCCACCACTTGATGGA+GGG | 0.594468 | 3.4:-43238695 | None:intergenic |
| GCTTGTGGTAAGGTTAGACC+AGG | 0.598119 | 3.4:-43239701 | None:intergenic |
| AAATATGGGAAATGCCTTTG+GGG | 0.602185 | 3.4:+43239655 | MS.gene22109:CDS |
| TCACCACCATCACATGGTGG+AGG | 0.604865 | 3.4:+43238564 | MS.gene22109:CDS |
| GATGGAGAAGTACTCCTATG+TGG | 0.608784 | 3.4:-43238507 | None:intergenic |
| GATGAAGGATTTCCTGAATG+TGG | 0.608994 | 3.4:-43238310 | None:intergenic |
| GGAAGCTCACCACCTTCACA+TGG | 0.609355 | 3.4:+43238534 | MS.gene22109:CDS |
| CACCACCATCACATGGTGGA+GGG | 0.611558 | 3.4:+43238565 | MS.gene22109:CDS |
| ATGGAGAAGTACTCCTATGT+GGG | 0.616241 | 3.4:-43238506 | None:intergenic |
| ATGGTGTTGAAGGTGTAGAA+GGG | 0.620326 | 3.4:-43238641 | None:intergenic |
| TAACTTGGTCAGTTGTGTAA+GGG | 0.620778 | 3.4:-43239811 | None:intergenic |
| TAGTATCCACCACTTGATGG+AGG | 0.621034 | 3.4:-43238696 | None:intergenic |
| TCTATTGGTGTTGATGGAGA+TGG | 0.623143 | 3.4:-43238768 | None:intergenic |
| AGCTCATCACCACCATCACA+TGG | 0.624071 | 3.4:+43238558 | MS.gene22109:CDS |
| TAAGACCCTCCACCATGTGA+TGG | 0.626381 | 3.4:-43238570 | None:intergenic |
| GTTAGACCAGGAGTAAACCC+TGG | 0.627036 | 3.4:-43239689 | None:intergenic |
| TTAGGAGCACTCTACAGAGA+AGG | 0.629627 | 3.4:+43239749 | MS.gene22109:CDS |
| CCATCAAACCCTCCATCAAG+TGG | 0.632528 | 3.4:+43238687 | MS.gene22109:CDS |
| TGGGGAATTCTAGGTTGGTG+GGG | 0.637604 | 3.4:+43239632 | MS.gene22109:CDS |
| ATCATCACTTCACTCCAACA+AGG | 0.638513 | 3.4:+43239847 | MS.gene22109:CDS |
| GGTGGTGTCAATGTCACTGG+TGG | 0.651179 | 3.4:-43238747 | None:intergenic |
| ATGTGGATCTTCAACAGTGG+TGG | 0.651198 | 3.4:-43238293 | None:intergenic |
| GATGAGCTTCCATGTGAAGG+TGG | 0.651216 | 3.4:-43238543 | None:intergenic |
| AGTTCCAGGGAAAGGAGATG+GGG | 0.657593 | 3.4:-43238832 | None:intergenic |
| TATCCACATCCAGTTGAAGG+TGG | 0.658842 | 3.4:-43238603 | None:intergenic |
| TCAAACCCTCCATCAAGTGG+TGG | 0.659955 | 3.4:+43238690 | MS.gene22109:CDS |
| CTTGTGTTGGAAAGTGCTTG+TGG | 0.664673 | 3.4:-43239716 | None:intergenic |
| GACCCTCCACCATGTGATGG+TGG | 0.670898 | 3.4:-43238567 | None:intergenic |
| ACTCATCCAGGAATAATATG+GGG | 0.672725 | 3.4:+43239614 | MS.gene22109:CDS |
| TGGAATATTAGTCACCCCAA+AGG | 0.674127 | 3.4:-43239669 | None:intergenic |
| GAAGGTGTAGAAGGGTCATG+TGG | 0.678018 | 3.4:-43238633 | None:intergenic |
| GGTGTAGAAGGGTCATGTGG+TGG | 0.687223 | 3.4:-43238630 | None:intergenic |
| TGAATGTGGATCTTCAACAG+TGG | 0.696724 | 3.4:-43238296 | None:intergenic |
| AGGGAACTTCTGGTTCACCA+AGG | 0.718247 | 3.4:-43239792 | None:intergenic |
| TGGAGATTACAGGAATCACA+AGG | 0.719034 | 3.4:-43238273 | None:intergenic |
| TCATCACCACCATCACATGG+TGG | 0.774824 | 3.4:+43238561 | MS.gene22109:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATTAAACAATGTTA+GGG | - | chr3.4:43238428-43238447 | None:intergenic | 10.0% |
| !!! | TATACTACTTTTTTTTTTAA+TGG | - | chr3.4:43239459-43239478 | None:intergenic | 10.0% |
| !! | ATATATATTAAAACAAGAGA+TGG | - | chr3.4:43239431-43239450 | None:intergenic | 15.0% |
| !! | CTTAAATATTAAACAATGTT+AGG | - | chr3.4:43238429-43238448 | None:intergenic | 15.0% |
| !! | TAATATTTGTTTCAAATAAC+AGG | + | chr3.4:43238952-43238971 | MS.gene22109:intron | 15.0% |
| !! | TGAAACAAATATTATGAAAT+AGG | - | chr3.4:43238946-43238965 | None:intergenic | 15.0% |
| !! | TTAAATCCATATACATAAAA+GGG | - | chr3.4:43239216-43239235 | None:intergenic | 15.0% |
| !!! | AAATTTTGAATACTAAAGTT+AGG | - | chr3.4:43238366-43238385 | None:intergenic | 15.0% |
| !!! | AATTTTGAATACTAAAGTTA+GGG | - | chr3.4:43238365-43238384 | None:intergenic | 15.0% |
| !! | AAATAAGACATTAAACAATG+TGG | - | chr3.4:43238884-43238903 | None:intergenic | 20.0% |
| !! | AGCTAAACTAAAATTTAATG+TGG | - | chr3.4:43239007-43239026 | None:intergenic | 20.0% |
| !! | GTTAAATCCATATACATAAA+AGG | - | chr3.4:43239217-43239236 | None:intergenic | 20.0% |
| !! | TAATACTACTTATCTTTCTA+AGG | - | chr3.4:43239255-43239274 | None:intergenic | 20.0% |
| !! | TACATGGTTAGTATAAATAT+TGG | - | chr3.4:43238391-43238410 | None:intergenic | 20.0% |
| !!! | ATGAATAAAGTCCTTTTTAT+AGG | - | chr3.4:43239055-43239074 | None:intergenic | 20.0% |
| !!! | GTTTTGATAAGTAGTATATT+TGG | + | chr3.4:43239316-43239335 | MS.gene22109:intron | 20.0% |
| !!! | TGAATAAAGTCCTTTTTATA+GGG | - | chr3.4:43239054-43239073 | None:intergenic | 20.0% |
| !!! | TTAAATTTTAGTTTAGCTAG+TGG | + | chr3.4:43239009-43239028 | MS.gene22109:intron | 20.0% |
| !!! | ACAGATTAGTAGTTTTAACA+AGG | + | chr3.4:43239517-43239536 | MS.gene22109:intron | 25.0% |
| !!! | ATGTCATTTTCCCTATAAAA+AGG | + | chr3.4:43239041-43239060 | MS.gene22109:intron | 25.0% |
| GAACATTGAAAAGGAAACAT+AGG | - | chr3.4:43238224-43238243 | None:intergenic | 30.0% | |
| GGTTACTAGATATAACTACA+TGG | - | chr3.4:43238407-43238426 | None:intergenic | 30.0% | |
| TGTTGTGTTTAACATAATGC+AGG | + | chr3.4:43238483-43238502 | MS.gene22109:intron | 30.0% | |
| TTCAAATAACAGGAGAGATA+TGG | + | chr3.4:43238962-43238981 | MS.gene22109:intron | 30.0% | |
| ! | GAAACACCCTTTTATGTATA+TGG | + | chr3.4:43239207-43239226 | MS.gene22109:intron | 30.0% |
| ! | TACTTATCTTTCTAAGGAGT+TGG | - | chr3.4:43239249-43239268 | None:intergenic | 30.0% |
| !! | TTTTCAAGATGGCAAATGAA+GGG | + | chr3.4:43239891-43239910 | MS.gene22109:CDS | 30.0% |
| AAATATGGGAAATGCCTTTG+GGG | + | chr3.4:43239655-43239674 | MS.gene22109:CDS | 35.0% | |
| AACACAAGAACTGATGGTTT+AGG | + | chr3.4:43239731-43239750 | MS.gene22109:CDS | 35.0% | |
| ACTCATCCAGGAATAATATG+GGG | + | chr3.4:43239614-43239633 | MS.gene22109:CDS | 35.0% | |
| AGAATTCCCCATATTATTCC+TGG | - | chr3.4:43239623-43239642 | None:intergenic | 35.0% | |
| CTTCATTTGCCATCTTGAAA+AGG | - | chr3.4:43239892-43239911 | None:intergenic | 35.0% | |
| GAAATATGGGAAATGCCTTT+GGG | + | chr3.4:43239654-43239673 | MS.gene22109:CDS | 35.0% | |
| GAATCAGAGAAAACTGATGA+AGG | - | chr3.4:43238328-43238347 | None:intergenic | 35.0% | |
| GACTCATCCAGGAATAATAT+GGG | + | chr3.4:43239613-43239632 | MS.gene22109:CDS | 35.0% | |
| GGAATAATATGGGGAATTCT+AGG | + | chr3.4:43239623-43239642 | MS.gene22109:CDS | 35.0% | |
| TAAACCATCAGTTCTTGTGT+TGG | - | chr3.4:43239732-43239751 | None:intergenic | 35.0% | |
| TAACTTGGTCAGTTGTGTAA+GGG | - | chr3.4:43239814-43239833 | None:intergenic | 35.0% | |
| TAATATGGGGAATTCTAGGT+TGG | + | chr3.4:43239627-43239646 | MS.gene22109:CDS | 35.0% | |
| TAGGGAAAATGACATAACAC+TGG | - | chr3.4:43239036-43239055 | None:intergenic | 35.0% | |
| TTACACAACTGACCAAGTTA+GGG | + | chr3.4:43239814-43239833 | MS.gene22109:CDS | 35.0% | |
| TTATAGTATCCACCACTTGA+TGG | - | chr3.4:43238702-43238721 | None:intergenic | 35.0% | |
| ! | AAGCACTGTGAACATTGAAA+AGG | - | chr3.4:43238233-43238252 | None:intergenic | 35.0% |
| ! | TTTCTGTGATTTTCAGCTAC+TGG | + | chr3.4:43239588-43239607 | MS.gene22109:intron | 35.0% |
| !! | CTTTTCAAGATGGCAAATGA+AGG | + | chr3.4:43239890-43239909 | MS.gene22109:CDS | 35.0% |
| AATATTCCAGGGTTTACTCC+TGG | + | chr3.4:43239683-43239702 | MS.gene22109:CDS | 40.0% | |
| ACTGTTGAAGATCCACATTC+AGG | + | chr3.4:43238298-43238317 | MS.gene22109:CDS | 40.0% | |
| ATCATCACTTCACTCCAACA+AGG | + | chr3.4:43239847-43239866 | MS.gene22109:CDS | 40.0% | |
| CAACTTACTTGCAAGTTCCA+GGG | - | chr3.4:43238848-43238867 | None:intergenic | 40.0% | |
| CTAACTTGGTCAGTTGTGTA+AGG | - | chr3.4:43239815-43239834 | None:intergenic | 40.0% | |
| CTTACACAACTGACCAAGTT+AGG | + | chr3.4:43239813-43239832 | MS.gene22109:CDS | 40.0% | |
| CTTTCCAACACAAGAACTGA+TGG | + | chr3.4:43239725-43239744 | MS.gene22109:CDS | 40.0% | |
| GAATATCCACATCCAGTTGA+AGG | - | chr3.4:43238609-43238628 | None:intergenic | 40.0% | |
| GATGAAGGATTTCCTGAATG+TGG | - | chr3.4:43238313-43238332 | None:intergenic | 40.0% | |
| GGAAATATGGGAAATGCCTT+TGG | + | chr3.4:43239653-43239672 | MS.gene22109:CDS | 40.0% | |
| GGACTCATCCAGGAATAATA+TGG | + | chr3.4:43239612-43239631 | MS.gene22109:CDS | 40.0% | |
| TGAATGTGGATCTTCAACAG+TGG | - | chr3.4:43238299-43238318 | None:intergenic | 40.0% | |
| TGCTTCATTCCTTAACTCCT+TGG | + | chr3.4:43239775-43239794 | MS.gene22109:CDS | 40.0% | |
| TGGAATATTAGTCACCCCAA+AGG | - | chr3.4:43239672-43239691 | None:intergenic | 40.0% | |
| TGGAGATTACAGGAATCACA+AGG | - | chr3.4:43238276-43238295 | None:intergenic | 40.0% | |
| TTGGGGTGACTAATATTCCA+GGG | + | chr3.4:43239672-43239691 | MS.gene22109:CDS | 40.0% | |
| ! | ATGGTGTTGAAGGTGTAGAA+GGG | - | chr3.4:43238644-43238663 | None:intergenic | 40.0% |
| ! | GGATTATGTGATGGTGTTGA+AGG | - | chr3.4:43238654-43238673 | None:intergenic | 40.0% |
| ! | TTTGGGGTGACTAATATTCC+AGG | + | chr3.4:43239671-43239690 | MS.gene22109:CDS | 40.0% |
| !! | ACAAGCTCACCTTTTCAAGA+TGG | + | chr3.4:43239880-43239899 | MS.gene22109:CDS | 40.0% |
| !! | ATGGAGAAGTACTCCTATGT+GGG | - | chr3.4:43238509-43238528 | None:intergenic | 40.0% |
| !! | GAAGGTGTTGGATTATGTGA+TGG | - | chr3.4:43238663-43238682 | None:intergenic | 40.0% |
| !! | TCTATTGGTGTTGATGGAGA+TGG | - | chr3.4:43238771-43238790 | None:intergenic | 40.0% |
| !! | TTTGATGGTGTTGAAGGTGT+TGG | - | chr3.4:43238675-43238694 | None:intergenic | 40.0% |
| AACATAATGCAGGCCCACAT+AGG | + | chr3.4:43238493-43238512 | MS.gene22109:intron | 45.0% | |
| AAGGAAGGAAAGGTGGTGTA+GGG | - | chr3.4:43238812-43238831 | None:intergenic | 45.0% | |
| AAGTTCCAGGGAAAGGAGAT+GGG | - | chr3.4:43238836-43238855 | None:intergenic | 45.0% | |
| AGTATCCACCACTTGATGGA+GGG | - | chr3.4:43238698-43238717 | None:intergenic | 45.0% | |
| ATGCAAACCTGTCCCTAACT+TGG | - | chr3.4:43239829-43239848 | None:intergenic | 45.0% | |
| ATGTGGATCTTCAACAGTGG+TGG | - | chr3.4:43238296-43238315 | None:intergenic | 45.0% | |
| CAGTTGTGTAAGGGAACTTC+TGG | - | chr3.4:43239805-43239824 | None:intergenic | 45.0% | |
| CCATCAACACCAATAGATCC+TGG | + | chr3.4:43238774-43238793 | MS.gene22109:CDS | 45.0% | |
| GCAACTTACTTGCAAGTTCC+AGG | - | chr3.4:43238849-43238868 | None:intergenic | 45.0% | |
| TACTTGCAAGTTCCAGGGAA+AGG | - | chr3.4:43238843-43238862 | None:intergenic | 45.0% | |
| TAGTATCCACCACTTGATGG+AGG | - | chr3.4:43238699-43238718 | None:intergenic | 45.0% | |
| TATCCACATCCAGTTGAAGG+TGG | - | chr3.4:43238606-43238625 | None:intergenic | 45.0% | |
| ! | AATGTCACTGGTGGATCAGT+TGG | - | chr3.4:43238741-43238760 | None:intergenic | 45.0% |
| ! | CTGTGATTTTCAGCTACTGG+AGG | + | chr3.4:43239591-43239610 | MS.gene22109:intron | 45.0% |
| ! | GATGGTGTTGAAGGTGTAGA+AGG | - | chr3.4:43238645-43238664 | None:intergenic | 45.0% |
| ! | TATGGGGAATTCTAGGTTGG+TGG | + | chr3.4:43239630-43239649 | MS.gene22109:CDS | 45.0% |
| ! | TCAACAGTGGTGGAGATTAC+AGG | - | chr3.4:43238286-43238305 | None:intergenic | 45.0% |
| ! | TCTGGTTCACCAAGGAGTTA+AGG | - | chr3.4:43239787-43239806 | None:intergenic | 45.0% |
| !! | AGGAGTACTTCTCCATCTCA+TGG | + | chr3.4:43238513-43238532 | MS.gene22109:CDS | 45.0% |
| !! | ATGGGGAATTCTAGGTTGGT+GGG | + | chr3.4:43239631-43239650 | MS.gene22109:CDS | 45.0% |
| !! | ATTGGTGTTGATGGAGATGG+TGG | - | chr3.4:43238768-43238787 | None:intergenic | 45.0% |
| !! | CCAGGATCTATTGGTGTTGA+TGG | - | chr3.4:43238777-43238796 | None:intergenic | 45.0% |
| !! | CTAGGTTGGTGGGGAAATAT+GGG | + | chr3.4:43239641-43239660 | MS.gene22109:CDS | 45.0% |
| !! | CTTGTGTTGGAAAGTGCTTG+TGG | - | chr3.4:43239719-43239738 | None:intergenic | 45.0% |
| !! | GATGGAGAAGTACTCCTATG+TGG | - | chr3.4:43238510-43238529 | None:intergenic | 45.0% |
| !! | GTTGGAAAGTGCTTGTGGTA+AGG | - | chr3.4:43239714-43239733 | None:intergenic | 45.0% |
| !! | TCTAGGTTGGTGGGGAAATA+TGG | + | chr3.4:43239640-43239659 | MS.gene22109:CDS | 45.0% |
| !! | TTAGGAGCACTCTACAGAGA+AGG | + | chr3.4:43239749-43239768 | MS.gene22109:CDS | 45.0% |
| AAAGGTGGTGTAGGGACAGT+AGG | - | chr3.4:43238804-43238823 | None:intergenic | 50.0% | |
| ACACCACCTTCAACTGGATG+TGG | + | chr3.4:43238600-43238619 | MS.gene22109:CDS | 50.0% | |
| ACTCCAACACCACCTTCAAC+TGG | + | chr3.4:43238594-43238613 | MS.gene22109:CDS | 50.0% | |
| AGCTCATCACCACCATCACA+TGG | + | chr3.4:43238558-43238577 | MS.gene22109:CDS | 50.0% | |
| AGTTCCAGGGAAAGGAGATG+GGG | - | chr3.4:43238835-43238854 | None:intergenic | 50.0% | |
| CAACTGACCAAGTTAGGGAC+AGG | + | chr3.4:43239819-43239838 | MS.gene22109:CDS | 50.0% | |
| CAAGTTCCAGGGAAAGGAGA+TGG | - | chr3.4:43238837-43238856 | None:intergenic | 50.0% | |
| CATCCAGTTGAAGGTGGTGT+TGG | - | chr3.4:43238600-43238619 | None:intergenic | 50.0% | |
| CCACTTGATGGAGGGTTTGA+TGG | - | chr3.4:43238690-43238709 | None:intergenic | 50.0% | |
| CCATCAAACCCTCCATCAAG+TGG | + | chr3.4:43238687-43238706 | MS.gene22109:CDS | 50.0% | |
| GAAGGAAGGAAAGGTGGTGT+AGG | - | chr3.4:43238813-43238832 | None:intergenic | 50.0% | |
| GATGAGCTTCCATGTGAAGG+TGG | - | chr3.4:43238546-43238565 | None:intergenic | 50.0% | |
| GCTTGTGGTAAGGTTAGACC+AGG | - | chr3.4:43239704-43239723 | None:intergenic | 50.0% | |
| GGTGATGAGCTTCCATGTGA+AGG | - | chr3.4:43238549-43238568 | None:intergenic | 50.0% | |
| GGTGGATCAGTTGGAGTTGA+TGG | - | chr3.4:43238732-43238751 | None:intergenic | 50.0% | |
| GTTAGACCAGGAGTAAACCC+TGG | - | chr3.4:43239692-43239711 | None:intergenic | 50.0% | |
| TAAGACCCTCCACCATGTGA+TGG | - | chr3.4:43238573-43238592 | None:intergenic | 50.0% | |
| TCAAACCCTCCATCAAGTGG+TGG | + | chr3.4:43238690-43238709 | MS.gene22109:CDS | 50.0% | |
| TCATCACCACCATCACATGG+TGG | + | chr3.4:43238561-43238580 | MS.gene22109:CDS | 50.0% | |
| ! | GAAGGTGTAGAAGGGTCATG+TGG | - | chr3.4:43238636-43238655 | None:intergenic | 50.0% |
| ! | GATGGTGGTGTCAATGTCAC+TGG | - | chr3.4:43238753-43238772 | None:intergenic | 50.0% |
| ! | TTGTGTTGCAGCAGCCTTGT+TGG | - | chr3.4:43239864-43239883 | None:intergenic | 50.0% |
| !! | AGGGAACTTCTGGTTCACCA+AGG | - | chr3.4:43239795-43239814 | None:intergenic | 50.0% |
| !! | GGAGGGTTTGATGGTGTTGA+AGG | - | chr3.4:43238681-43238700 | None:intergenic | 50.0% |
| !! | GGATCAGTTGGAGTTGATGG+TGG | - | chr3.4:43238729-43238748 | None:intergenic | 50.0% |
| !! | GTAGGAGTGCCAGGATCTAT+TGG | - | chr3.4:43238786-43238805 | None:intergenic | 50.0% |
| !! | TGGGGAATTCTAGGTTGGTG+GGG | + | chr3.4:43239632-43239651 | MS.gene22109:CDS | 50.0% |
| AGCTACTGGAGGACTCATCC+AGG | + | chr3.4:43239602-43239621 | MS.gene22109:intron | 55.0% | |
| GATGGGGAAGGAAGGAAAGG+TGG | - | chr3.4:43238819-43238838 | None:intergenic | 55.0% | |
| GGAAAGGAGATGGGGAAGGA+AGG | - | chr3.4:43238827-43238846 | None:intergenic | 55.0% | |
| GGAAGCTCACCACCTTCACA+TGG | + | chr3.4:43238534-43238553 | MS.gene22109:CDS | 55.0% | |
| GGAGATGGGGAAGGAAGGAA+AGG | - | chr3.4:43238822-43238841 | None:intergenic | 55.0% | |
| GGTGGTGAGCTTCCATGAGA+TGG | - | chr3.4:43238528-43238547 | None:intergenic | 55.0% | |
| GGTGTAGAAGGGTCATGTGG+TGG | - | chr3.4:43238633-43238652 | None:intergenic | 55.0% | |
| TCACCACCATCACATGGTGG+AGG | + | chr3.4:43238564-43238583 | MS.gene22109:CDS | 55.0% | |
| ! | CACCACCATCACATGGTGGA+GGG | + | chr3.4:43238565-43238584 | MS.gene22109:CDS | 55.0% |
| ! | GGTGGTGTCAATGTCACTGG+TGG | - | chr3.4:43238750-43238769 | None:intergenic | 55.0% |
| CCAGGGAAAGGAGATGGGGA+AGG | - | chr3.4:43238831-43238850 | None:intergenic | 60.0% | |
| CCTTCCCCATCTCCTTTCCC+TGG | + | chr3.4:43238828-43238847 | MS.gene22109:CDS | 60.0% | |
| GACCCTCCACCATGTGATGG+TGG | - | chr3.4:43238570-43238589 | None:intergenic | 60.0% | |
| !! | GTAGGGACAGTAGGAGTGCC+AGG | - | chr3.4:43238795-43238814 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 43238205 | 43239934 | 43238205 | ID=MS.gene22109 |
| chr3.4 | mRNA | 43238205 | 43239934 | 43238205 | ID=MS.gene22109.t1;Parent=MS.gene22109 |
| chr3.4 | exon | 43238205 | 43238352 | 43238205 | ID=MS.gene22109.t1.exon1;Parent=MS.gene22109.t1 |
| chr3.4 | CDS | 43238205 | 43238352 | 43238205 | ID=cds.MS.gene22109.t1;Parent=MS.gene22109.t1 |
| chr3.4 | exon | 43238505 | 43238859 | 43238505 | ID=MS.gene22109.t1.exon2;Parent=MS.gene22109.t1 |
| chr3.4 | CDS | 43238505 | 43238859 | 43238505 | ID=cds.MS.gene22109.t1;Parent=MS.gene22109.t1 |
| chr3.4 | exon | 43239604 | 43239934 | 43239604 | ID=MS.gene22109.t1.exon3;Parent=MS.gene22109.t1 |
| chr3.4 | CDS | 43239604 | 43239934 | 43239604 | ID=cds.MS.gene22109.t1;Parent=MS.gene22109.t1 |
| Gene Sequence |
| Protein sequence |
