Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22600.t1 | XP_003611166.2 | 95.6 | 545 | 24 | 0 | 34 | 578 | 1 | 545 | 1.20E-304 | 1055 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22600.t1 | Q9S746 | 55.8 | 529 | 227 | 3 | 46 | 571 | 63 | 587 | 3.5e-167 | 589.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22600.t1 | G7KER7 | 95.6 | 545 | 24 | 0 | 34 | 578 | 1 | 545 | 8.7e-305 | 1055.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22600 | MS.gene81622 | PPI |
| MS.gene22600 | MS.gene016742 | PPI |
| MS.gene22600 | MS.gene37911 | PPI |
| MS.gene22600 | MS.gene070509 | PPI |
| MS.gene22600 | MS.gene81620 | PPI |
| MS.gene22600 | MS.gene81617 | PPI |
| MS.gene22600 | MS.gene016743 | PPI |
| MS.gene22600 | MS.gene057886 | PPI |
| MS.gene22600 | MS.gene070503 | PPI |
| MS.gene22600 | MS.gene070507 | PPI |
| MS.gene22600 | MS.gene057883 | PPI |
| MS.gene22600 | MS.gene016758 | PPI |
| MS.gene22600 | MS.gene070492 | PPI |
| MS.gene22600 | MS.gene070510 | PPI |
| MS.gene22600 | MS.gene070511 | PPI |
| MS.gene22600 | MS.gene070505 | PPI |
| MS.gene22600 | MS.gene057884 | PPI |
| MS.gene22600 | MS.gene67840 | PPI |
| MS.gene22600 | MS.gene81615 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22600.t1 | MTR_5g011020 | 95.596 | 545 | 24 | 0 | 34 | 578 | 1 | 545 | 0.0 | 1082 |
| MS.gene22600.t1 | MTR_5g011010 | 87.102 | 566 | 71 | 1 | 14 | 577 | 14 | 579 | 0.0 | 1026 |
| MS.gene22600.t1 | MTR_1g101770 | 58.103 | 580 | 229 | 5 | 1 | 573 | 1 | 573 | 0.0 | 665 |
| MS.gene22600.t1 | MTR_2g100070 | 52.961 | 591 | 255 | 6 | 1 | 573 | 4 | 589 | 0.0 | 617 |
| MS.gene22600.t1 | MTR_8g016320 | 54.419 | 577 | 243 | 7 | 9 | 573 | 13 | 581 | 0.0 | 609 |
| MS.gene22600.t1 | MTR_4g005860 | 45.818 | 550 | 254 | 8 | 34 | 571 | 42 | 559 | 1.08e-156 | 461 |
| MS.gene22600.t1 | MTR_1g101760 | 50.690 | 507 | 174 | 8 | 1 | 481 | 1 | 457 | 8.78e-152 | 444 |
| MS.gene22600.t1 | MTR_5g041340 | 41.227 | 587 | 259 | 13 | 8 | 576 | 18 | 536 | 3.62e-137 | 410 |
| MS.gene22600.t1 | MTR_5g024110 | 58.929 | 56 | 23 | 0 | 182 | 237 | 23 | 78 | 1.13e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22600.t1 | AT1G12570 | 61.962 | 581 | 188 | 9 | 6 | 572 | 8 | 569 | 0.0 | 719 |
| MS.gene22600.t1 | AT5G51950 | 57.612 | 578 | 229 | 7 | 4 | 571 | 5 | 576 | 0.0 | 659 |
| MS.gene22600.t1 | AT5G51950 | 57.840 | 574 | 232 | 6 | 4 | 571 | 5 | 574 | 0.0 | 658 |
| MS.gene22600.t1 | AT3G56060 | 56.326 | 577 | 240 | 6 | 1 | 573 | 1 | 569 | 0.0 | 652 |
| MS.gene22600.t1 | AT5G51950 | 59.375 | 544 | 212 | 5 | 34 | 571 | 1 | 541 | 0.0 | 646 |
| MS.gene22600.t1 | AT5G51930 | 55.474 | 548 | 232 | 3 | 32 | 576 | 12 | 550 | 0.0 | 606 |
| MS.gene22600.t1 | AT1G72970 | 55.639 | 532 | 229 | 3 | 44 | 572 | 61 | 588 | 0.0 | 606 |
| MS.gene22600.t1 | AT5G51930 | 53.846 | 559 | 240 | 4 | 6 | 561 | 39 | 582 | 0.0 | 590 |
| MS.gene22600.t1 | AT1G72970 | 54.426 | 531 | 210 | 3 | 44 | 572 | 61 | 561 | 0.0 | 575 |
| MS.gene22600.t1 | AT1G73050 | 48.718 | 546 | 237 | 8 | 33 | 571 | 41 | 550 | 4.26e-168 | 489 |
| MS.gene22600.t1 | AT1G14190 | 41.610 | 584 | 256 | 13 | 5 | 577 | 1 | 510 | 4.16e-135 | 404 |
| MS.gene22600.t1 | AT1G14190 | 42.884 | 541 | 233 | 9 | 46 | 577 | 16 | 489 | 8.80e-135 | 402 |
| MS.gene22600.t1 | AT1G14185 | 44.151 | 530 | 227 | 10 | 46 | 570 | 37 | 502 | 4.08e-134 | 400 |
Find 152 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCAAAACCCTATGATTT+TGG | 0.120797 | 5.2:-3844255 | None:intergenic |
| GCTTGGACCAAGAAGCTTTC+AGG | 0.175664 | 5.2:+3847329 | MS.gene22600:CDS |
| TAATTTGGTGTGCAGGTATA+TGG | 0.191827 | 5.2:+3847943 | MS.gene22600:intron |
| TAGTGAAGCAATCATATAAA+TGG | 0.197405 | 5.2:+3845300 | MS.gene22600:CDS |
| CACAAATACTTCAATGTCTT+TGG | 0.202029 | 5.2:+3847615 | MS.gene22600:CDS |
| TTCTATGATTACATCATAAT+TGG | 0.207760 | 5.2:+3844193 | MS.gene22600:CDS |
| TCCAAATGACCCGTTGAAAT+TGG | 0.223565 | 5.2:-3847382 | None:intergenic |
| AAACATTGTGTATCTTTAAA+AGG | 0.227971 | 5.2:+3843379 | MS.gene22600:CDS |
| GACATGTTTGTGTATTTAAA+TGG | 0.229277 | 5.2:-3847535 | None:intergenic |
| GCCAATTTCAACGGGTCATT+TGG | 0.251169 | 5.2:+3847381 | MS.gene22600:CDS |
| TGGAGAGAGTAGTGGCATTT+TGG | 0.258947 | 5.2:+3845324 | MS.gene22600:CDS |
| AGCAGTTAGGGATGGATTAT+TGG | 0.263227 | 5.2:+3845370 | MS.gene22600:CDS |
| ACACACTGCAGCTGATCTTT+TGG | 0.267372 | 5.2:+3845484 | MS.gene22600:CDS |
| CAGTGTGTCTTTGACCATTT+TGG | 0.294524 | 5.2:-3845469 | None:intergenic |
| GCACTTAAATTTGTTATGTT+CGG | 0.305659 | 5.2:-3844307 | None:intergenic |
| ATCCACCCCTGAAAGCTTCT+TGG | 0.312971 | 5.2:-3847336 | None:intergenic |
| GTTACCAAAGGGTTCTCATT+TGG | 0.324244 | 5.2:-3847421 | None:intergenic |
| CAACACTATCCCAAAATCAT+AGG | 0.325480 | 5.2:+3844245 | MS.gene22600:CDS |
| GGTACAATCTTTGACCAAAA+TGG | 0.327169 | 5.2:+3845455 | MS.gene22600:CDS |
| ATCCCAAAATCATAGGGTTT+TGG | 0.327308 | 5.2:+3844252 | MS.gene22600:CDS |
| TTTAAAGATACACAATGTTT+AGG | 0.335619 | 5.2:-3843376 | None:intergenic |
| TCTGGGGTCCTTTGCTTTGG+TGG | 0.336604 | 5.2:-3847274 | None:intergenic |
| CACTTAAATTTGTTATGTTC+GGG | 0.341867 | 5.2:-3844306 | None:intergenic |
| ATGCATCTTTCTAAGTCTCT+TGG | 0.342163 | 5.2:-3847463 | None:intergenic |
| AACTCAAGAGCTCGTGTTCT+AGG | 0.350823 | 5.2:+3844403 | MS.gene22600:CDS |
| TCTCATTTGGATCGGTGTTT+CGG | 0.351009 | 5.2:-3847408 | None:intergenic |
| GCTTCTGGGGTCCTTTGCTT+TGG | 0.357996 | 5.2:-3847277 | None:intergenic |
| TTTCTAAGTCTCTTGGGTCT+TGG | 0.359107 | 5.2:-3847456 | None:intergenic |
| CTTCTGATGTTGAGTGGAAT+AGG | 0.361079 | 5.2:+3846549 | MS.gene22600:CDS |
| GTTTCCCTCATTTCTGTTGT+TGG | 0.362758 | 5.2:+3846693 | MS.gene22600:CDS |
| GTGGCTTGAGGATTTGTTCC+AGG | 0.371531 | 5.2:-3847778 | None:intergenic |
| ATAACAAATTTAAGTGCCTT+TGG | 0.375662 | 5.2:+3844313 | MS.gene22600:CDS |
| GTGTTACATCAACCATTTGT+AGG | 0.376668 | 5.2:+3846609 | MS.gene22600:CDS |
| ATTGAAGTATTTGTGTGTTT+AGG | 0.379914 | 5.2:-3847607 | None:intergenic |
| TGTTCCAGGAGAATGATTAA+AGG | 0.385718 | 5.2:-3847764 | None:intergenic |
| TTTACATATGATCATATTCA+TGG | 0.385890 | 5.2:+3845419 | MS.gene22600:CDS |
| GGTTGTTGATAATGACTATA+AGG | 0.388892 | 5.2:+3847702 | MS.gene22600:CDS |
| TGGCACTGCAGGGTGTCCTT+TGG | 0.392070 | 5.2:+3844219 | MS.gene22600:CDS |
| TGCATCTTTCTAAGTCTCTT+GGG | 0.395588 | 5.2:-3847462 | None:intergenic |
| TGTTGTTAGTGAAGCTGGTT+GGG | 0.396158 | 5.2:+3845268 | MS.gene22600:intron |
| GAACGTGGTGGATCACCTTA+TGG | 0.396955 | 5.2:+3844280 | MS.gene22600:CDS |
| AATAGAACTCCATGTGCAAT+TGG | 0.403899 | 5.2:-3846432 | None:intergenic |
| CATACTTGAAACAAGGGATT+AGG | 0.405305 | 5.2:+3846484 | MS.gene22600:CDS |
| GATAATGACTATAAGGTTCT+TGG | 0.408907 | 5.2:+3847709 | MS.gene22600:CDS |
| CAACGATTCATTTCTGAAGA+TGG | 0.409151 | 5.2:+3844373 | MS.gene22600:CDS |
| GGGACATAAACAGAGTTCAT+AGG | 0.413692 | 5.2:-3846651 | None:intergenic |
| GTCAATGGCAATCAGCAGTT+AGG | 0.420528 | 5.2:+3845357 | MS.gene22600:CDS |
| ATTTATGTTGTTAGTGAAGC+TGG | 0.428155 | 5.2:+3845263 | MS.gene22600:intron |
| TTTATTTATACAATATTAAG+TGG | 0.433479 | 5.2:-3848005 | None:intergenic |
| AATTATGATGTAATCATAGA+AGG | 0.433575 | 5.2:-3844191 | None:intergenic |
| ATGGTGGTTGTCAAGTTGGT+AGG | 0.436196 | 5.2:+3847680 | MS.gene22600:CDS |
| AATTTGGTGTGCAGGTATAT+GGG | 0.437345 | 5.2:+3847944 | MS.gene22600:intron |
| TTTGGCCTCCTATGCGTCAA+TGG | 0.438093 | 5.2:+3845342 | MS.gene22600:CDS |
| ATCTTGGGGCCAATTTCAAC+GGG | 0.441009 | 5.2:+3847373 | MS.gene22600:CDS |
| ATAATTGGTGGTGGCACTGC+AGG | 0.447684 | 5.2:+3844208 | MS.gene22600:CDS |
| CAAGCCACTGTTATGATGCT+TGG | 0.447887 | 5.2:+3847793 | MS.gene22600:CDS |
| GCTAGCGGCGCAACCTTCAC+AGG | 0.452119 | 5.2:+3846747 | MS.gene22600:CDS |
| GAGACACTGTGATGACTATA+TGG | 0.455474 | 5.2:+3847650 | MS.gene22600:CDS |
| GACATTCCTTGTCCTACAAA+TGG | 0.458901 | 5.2:-3846621 | None:intergenic |
| TCTACCTTTAATCATTCTCC+TGG | 0.466597 | 5.2:+3847760 | MS.gene22600:CDS |
| CCCATCTCCTTCCCCGGTAG+AGG | 0.467548 | 5.2:+3846671 | MS.gene22600:CDS |
| AGTGAAGCAATCATATAAAT+GGG | 0.467560 | 5.2:+3845301 | MS.gene22600:CDS |
| CATATTCATGGGACTAAGGT+TGG | 0.468307 | 5.2:+3845431 | MS.gene22600:CDS |
| CTTGGACCAAGAAGCTTTCA+GGG | 0.472516 | 5.2:+3847330 | MS.gene22600:CDS |
| TATCATGGTGGTTGTCAAGT+TGG | 0.477768 | 5.2:+3847676 | MS.gene22600:CDS |
| AATAGAGAGGATGGAGAGCT+TGG | 0.480322 | 5.2:+3847312 | MS.gene22600:CDS |
| AATCTTGGGGCCAATTTCAA+CGG | 0.483426 | 5.2:+3847372 | MS.gene22600:CDS |
| GTTATGTTCGGGTTGCCATA+AGG | 0.487473 | 5.2:-3844295 | None:intergenic |
| ACCTCTACCGGGGAAGGAGA+TGG | 0.487897 | 5.2:-3846672 | None:intergenic |
| GGTGGAAGTTGTTTGAATGC+TGG | 0.490886 | 5.2:+3844427 | MS.gene22600:CDS |
| AGGGATGGATTATTGGAAGT+AGG | 0.496850 | 5.2:+3845377 | MS.gene22600:CDS |
| AGCAAAAGCAATAGAGAGGA+TGG | 0.501564 | 5.2:+3847303 | MS.gene22600:CDS |
| TATGATTACATCATAATTGG+TGG | 0.504417 | 5.2:+3844196 | MS.gene22600:CDS |
| TGATCATATTCATGGGACTA+AGG | 0.504726 | 5.2:+3845427 | MS.gene22600:CDS |
| GTTGTTGGCATTACCAACTT+TGG | 0.507784 | 5.2:+3846708 | MS.gene22600:CDS |
| AGAGCTCGTGTTCTAGGTGG+TGG | 0.509070 | 5.2:+3844409 | MS.gene22600:CDS |
| TGCACATGGAGTTCTATTCA+AGG | 0.511389 | 5.2:+3846437 | MS.gene22600:CDS |
| TCATATGTAAAGCCATTGTC+AGG | 0.515797 | 5.2:-3845407 | None:intergenic |
| GACCAAGAAGCTTTCAGGGG+TGG | 0.515957 | 5.2:+3847334 | MS.gene22600:CDS |
| AGTAGTTAAATGTTACCAAA+GGG | 0.518064 | 5.2:-3847432 | None:intergenic |
| TAGGAGCAGCATATCACCTT+AGG | 0.520183 | 5.2:+3846568 | MS.gene22600:CDS |
| TCAGAAATGAATCGTTGAGC+AGG | 0.522804 | 5.2:-3844367 | None:intergenic |
| TTATGTCCCATCTCCTTCCC+CGG | 0.526287 | 5.2:+3846665 | MS.gene22600:CDS |
| TTCAATGTAGCTGCCAAAGT+TGG | 0.526382 | 5.2:-3846721 | None:intergenic |
| CGATCCAAATGAGAACCCTT+TGG | 0.526890 | 5.2:+3847417 | MS.gene22600:CDS |
| TCAATGGCAATCAGCAGTTA+GGG | 0.526951 | 5.2:+3845358 | MS.gene22600:CDS |
| CCACTCAACATCAGAAGTTG+TGG | 0.527835 | 5.2:-3846543 | None:intergenic |
| CAAAGTTGCCACCAAAGCAA+AGG | 0.531704 | 5.2:+3847266 | MS.gene22600:CDS |
| TGTAAACAAGATTCTATGAA+CGG | 0.532945 | 5.2:-3845549 | None:intergenic |
| CACTCAACATCAGAAGTTGT+GGG | 0.533196 | 5.2:-3846542 | None:intergenic |
| CATAGGGCATACTTGAAACA+AGG | 0.533526 | 5.2:+3846477 | MS.gene22600:CDS |
| CAAAGGGTTCTCATTTGGAT+CGG | 0.534900 | 5.2:-3847416 | None:intergenic |
| CCTCTACCGGGGAAGGAGAT+GGG | 0.536487 | 5.2:-3846671 | None:intergenic |
| AATCGTTGAGCAGGAGAGGA+AGG | 0.537483 | 5.2:-3844358 | None:intergenic |
| TGCACGAGGGACAGAACATA+GGG | 0.539350 | 5.2:+3846461 | MS.gene22600:CDS |
| GAAATGAGGGAAACCTCTAC+CGG | 0.544183 | 5.2:-3846684 | None:intergenic |
| TAATCATAGAAGGATATGAT+TGG | 0.545325 | 5.2:-3844181 | None:intergenic |
| AGGGAAACCTCTACCGGGGA+AGG | 0.546280 | 5.2:-3846678 | None:intergenic |
| ATAGTATCAGCTGGTGCACT+AGG | 0.547558 | 5.2:+3846516 | MS.gene22600:CDS |
| GACTTAGAAAGATGCATACA+AGG | 0.549132 | 5.2:+3847469 | MS.gene22600:CDS |
| AATGAATCGTTGAGCAGGAG+AGG | 0.550548 | 5.2:-3844362 | None:intergenic |
| AAATGAGTGCTTTGCTGTGG+AGG | 0.551113 | 5.2:+3843317 | None:intergenic |
| TGGGATAGTGTTGCAGCCAA+AGG | 0.551223 | 5.2:-3844235 | None:intergenic |
| GGACATAAACAGAGTTCATA+GGG | 0.551740 | 5.2:-3846650 | None:intergenic |
| AGCTACATTGAAGCCGCTAG+CGG | 0.553596 | 5.2:+3846732 | MS.gene22600:CDS |
| ACAGGTTCTCAAAGAGACTT+CGG | 0.553744 | 5.2:+3846765 | MS.gene22600:CDS |
| CATCAACCATTTGTAGGACA+AGG | 0.554122 | 5.2:+3846615 | MS.gene22600:CDS |
| AAGTAGTTAAATGTTACCAA+AGG | 0.554482 | 5.2:-3847433 | None:intergenic |
| TGGTGGTTGTCAAGTTGGTA+GGG | 0.555852 | 5.2:+3847681 | MS.gene22600:CDS |
| ATGCACGAGGGACAGAACAT+AGG | 0.556360 | 5.2:+3846460 | MS.gene22600:CDS |
| CGTCGATTACGCGCAATGCA+TGG | 0.559170 | 5.2:-3847735 | None:intergenic |
| TGTTTAGGCAATAAATTCAC+TGG | 0.560377 | 5.2:-3847592 | None:intergenic |
| AATGAGATCATAGTATCAGC+TGG | 0.560987 | 5.2:+3846507 | MS.gene22600:CDS |
| CACTGATGTTATGTTGCCTA+AGG | 0.566142 | 5.2:-3846584 | None:intergenic |
| AACACTATCCCAAAATCATA+GGG | 0.567424 | 5.2:+3844246 | MS.gene22600:CDS |
| GCTGATTGCCATTGACGCAT+AGG | 0.567844 | 5.2:-3845350 | None:intergenic |
| CATGCATTGCGCGTAATCGA+CGG | 0.568080 | 5.2:+3847736 | MS.gene22600:CDS |
| TTACATATGATCATATTCAT+GGG | 0.568356 | 5.2:+3845420 | MS.gene22600:CDS |
| AGTTCAAAGCCAATTGCACA+TGG | 0.571984 | 5.2:+3846423 | MS.gene22600:CDS |
| GATTACATCATAATTGGTGG+TGG | 0.578599 | 5.2:+3844199 | MS.gene22600:CDS |
| CCACTGTTATGATGCTTGGA+AGG | 0.582795 | 5.2:+3847797 | MS.gene22600:CDS |
| TAATGCCAACAACAGAAATG+AGG | 0.587387 | 5.2:-3846698 | None:intergenic |
| TGTGAAGGTTGCGCCGCTAG+CGG | 0.588028 | 5.2:-3846745 | None:intergenic |
| GATTGCCATTGACGCATAGG+AGG | 0.594586 | 5.2:-3845347 | None:intergenic |
| GTCTCTTTGAGAACCTGTGA+AGG | 0.597401 | 5.2:-3846760 | None:intergenic |
| GTTACGTACCTTACGTAGCG+AGG | 0.600055 | 5.2:-3844469 | None:intergenic |
| AATGCCAACAACAGAAATGA+GGG | 0.604668 | 5.2:-3846697 | None:intergenic |
| AAATGAGGGAAACCTCTACC+GGG | 0.605560 | 5.2:-3846683 | None:intergenic |
| TGGCAATCAGCAGTTAGGGA+TGG | 0.606730 | 5.2:+3845362 | MS.gene22600:CDS |
| ATGTTGTTAGTGAAGCTGGT+TGG | 0.608199 | 5.2:+3845267 | MS.gene22600:intron |
| ATTCATGGGACTAAGGTTGG+AGG | 0.610715 | 5.2:+3845434 | MS.gene22600:CDS |
| ATGACTATATGGCATTATCA+TGG | 0.611532 | 5.2:+3847661 | MS.gene22600:CDS |
| GTGCAAGCCCTCGCTACGTA+AGG | 0.617018 | 5.2:+3844461 | MS.gene22600:CDS |
| ATCAGAAAGTGCAACACCAA+AGG | 0.626216 | 5.2:-3844329 | None:intergenic |
| GTAGGTGTATTGCCTGACAA+TGG | 0.628176 | 5.2:+3845395 | MS.gene22600:CDS |
| CCATAGCAAAAGCAATAGAG+AGG | 0.634747 | 5.2:+3847299 | MS.gene22600:CDS |
| CTAAAATGAGTGCTTTGCTG+TGG | 0.634793 | 5.2:+3843314 | None:intergenic |
| AGCATCATAACAGTGGCTTG+AGG | 0.640568 | 5.2:-3847790 | None:intergenic |
| GAAGCAATCATATAAATGGG+TGG | 0.641333 | 5.2:+3845304 | MS.gene22600:CDS |
| TAATTGGTGGTGGCACTGCA+GGG | 0.643965 | 5.2:+3844209 | MS.gene22600:CDS |
| CCTTCCAAGCATCATAACAG+TGG | 0.644107 | 5.2:-3847797 | None:intergenic |
| CCACAACTTCTGATGTTGAG+TGG | 0.651050 | 5.2:+3846543 | MS.gene22600:CDS |
| TTACGTACCTTACGTAGCGA+GGG | 0.652683 | 5.2:-3844468 | None:intergenic |
| GTTCTATTCAAGGATGCACG+AGG | 0.671675 | 5.2:+3846447 | MS.gene22600:CDS |
| ATAGGGCATACTTGAAACAA+GGG | 0.676597 | 5.2:+3846478 | MS.gene22600:CDS |
| TCAAGAGCTCGTGTTCTAGG+TGG | 0.679130 | 5.2:+3844406 | MS.gene22600:CDS |
| TTGGACCAAGAAGCTTTCAG+GGG | 0.685396 | 5.2:+3847331 | MS.gene22600:CDS |
| TAAATGGGTGGAGAGAGTAG+TGG | 0.709817 | 5.2:+3845316 | MS.gene22600:CDS |
| AATGAGGGAAACCTCTACCG+GGG | 0.712968 | 5.2:-3846682 | None:intergenic |
| AAACAAGATTCTATGAACGG+TGG | 0.714085 | 5.2:-3845546 | None:intergenic |
| TTCTATTCAAGGATGCACGA+GGG | 0.719810 | 5.2:+3846448 | MS.gene22600:CDS |
| ACTATATGGCATTATCATGG+TGG | 0.730214 | 5.2:+3847664 | MS.gene22600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTATATTATTAAATAGA+TGG | - | chr5.2:3845909-3845928 | None:intergenic | 10.0% |
| !!! | GTTGAATTTTTTTATTAATT+TGG | + | chr5.2:3847928-3847947 | MS.gene22600:intron | 10.0% |
| !!! | TAATATTTATTTTGTTATCT+CGG | + | chr5.2:3846344-3846363 | MS.gene22600:intron | 10.0% |
| !!! | TTATTGGTTAAAATTAATAT+AGG | - | chr5.2:3844922-3844941 | None:intergenic | 10.0% |
| !! | AAATTGACAAATTGATAAAT+CGG | + | chr5.2:3845709-3845728 | MS.gene22600:intron | 15.0% |
| !! | CTAATATTAAATATGAAAGT+TGG | + | chr5.2:3843758-3843777 | MS.gene22600:intron | 15.0% |
| !! | GTTTATGGTTATATTATATA+TGG | + | chr5.2:3843606-3843625 | MS.gene22600:intron | 15.0% |
| !! | TCAAAACCAAATAAATATTA+TGG | + | chr5.2:3846912-3846931 | MS.gene22600:intron | 15.0% |
| !!! | AAAAAAAGTTACAAAGTTTT+AGG | - | chr5.2:3844718-3844737 | None:intergenic | 15.0% |
| !!! | AATATTGTTATTTGTTAGTT+AGG | - | chr5.2:3846948-3846967 | None:intergenic | 15.0% |
| !!! | ATTATGTAGAATTTTAATGT+TGG | - | chr5.2:3845113-3845132 | None:intergenic | 15.0% |
| !!! | ATTTAGCACTTTAATTTTAA+AGG | - | chr5.2:3846197-3846216 | None:intergenic | 15.0% |
| !! | AAAAATATCACGATTGAATA+TGG | - | chr5.2:3847063-3847082 | None:intergenic | 20.0% |
| !! | AAAACAAGATATCTTAATGT+AGG | - | chr5.2:3845769-3845788 | None:intergenic | 20.0% |
| !! | AAACATTGTGTATCTTTAAA+AGG | + | chr5.2:3843379-3843398 | MS.gene22600:CDS | 20.0% |
| !! | AATTATGATGTAATCATAGA+AGG | - | chr5.2:3844194-3844213 | None:intergenic | 20.0% |
| !! | ACATTGTGAATTATATTAGT+TGG | + | chr5.2:3845858-3845877 | MS.gene22600:intron | 20.0% |
| !! | ACCAAATAAATATTATGGTA+TGG | + | chr5.2:3846917-3846936 | MS.gene22600:intron | 20.0% |
| !! | ACCAATAAAAAAGTAAATGT+TGG | + | chr5.2:3844934-3844953 | MS.gene22600:intron | 20.0% |
| !! | ATGTACAATATCATTTGTAT+GGG | + | chr5.2:3844645-3844664 | MS.gene22600:intron | 20.0% |
| !! | ATTAGTCATTAGATATCAAA+TGG | - | chr5.2:3843963-3843982 | None:intergenic | 20.0% |
| !! | TAGGTATAAATCATTAGATT+TGG | - | chr5.2:3844552-3844571 | None:intergenic | 20.0% |
| !! | TATGTACAATATCATTTGTA+TGG | + | chr5.2:3844644-3844663 | MS.gene22600:intron | 20.0% |
| !! | TTAAATAAAAGCAACAAGTT+AGG | - | chr5.2:3844617-3844636 | None:intergenic | 20.0% |
| !! | TTACATATGATCATATTCAT+GGG | + | chr5.2:3845420-3845439 | MS.gene22600:CDS | 20.0% |
| !! | TTACTATCAACTTTATATGT+AGG | - | chr5.2:3844571-3844590 | None:intergenic | 20.0% |
| !! | TTCACATAATCATCATTAAA+TGG | - | chr5.2:3846371-3846390 | None:intergenic | 20.0% |
| !! | TTCTATGATTACATCATAAT+TGG | + | chr5.2:3844193-3844212 | MS.gene22600:CDS | 20.0% |
| !! | TTTAAAGATACACAATGTTT+AGG | - | chr5.2:3843379-3843398 | None:intergenic | 20.0% |
| !! | TTTACATATGATCATATTCA+TGG | + | chr5.2:3845419-3845438 | MS.gene22600:CDS | 20.0% |
| !! | TTTATCTTGATATAACAAAG+AGG | - | chr5.2:3846167-3846186 | None:intergenic | 20.0% |
| !!! | ACTTGAATTGTAACATTTTA+AGG | - | chr5.2:3846103-3846122 | None:intergenic | 20.0% |
| !!! | ATAAAGTTGATAGTAAGTTT+TGG | + | chr5.2:3844575-3844594 | MS.gene22600:intron | 20.0% |
| !!! | ATTCATTCTAGAAAAAATCT+TGG | + | chr5.2:3847357-3847376 | MS.gene22600:CDS | 20.0% |
| !!! | CATTTTTATAGAGAAATTCA+TGG | + | chr5.2:3844744-3844763 | MS.gene22600:intron | 20.0% |
| !!! | GTCTTTAAAAAGTAATTCAT+AGG | - | chr5.2:3846871-3846890 | None:intergenic | 20.0% |
| !!! | TAAATTGCTATTTCACAAAT+CGG | + | chr5.2:3846261-3846280 | MS.gene22600:intron | 20.0% |
| !!! | TATTTTTTAGTTCACTTTGA+TGG | + | chr5.2:3845971-3845990 | MS.gene22600:intron | 20.0% |
| !!! | TCAATCGTGATATTTTTTAT+TGG | + | chr5.2:3847066-3847085 | MS.gene22600:intron | 20.0% |
| !!! | TCCAACATTTACTTTTTTAT+TGG | - | chr5.2:3844938-3844957 | None:intergenic | 20.0% |
| !!! | TTAGTAAAACATAGTTTGTT+TGG | - | chr5.2:3843742-3843761 | None:intergenic | 20.0% |
| !!! | TTCATTCTAGAAAAAATCTT+GGG | + | chr5.2:3847358-3847377 | MS.gene22600:CDS | 20.0% |
| ! | AAAAAAAAAGCAAAGTAGCA+TGG | + | chr5.2:3843584-3843603 | MS.gene22600:intron | 25.0% |
| ! | AAATAAATGTTGCTAGCAAT+TGG | + | chr5.2:3844070-3844089 | MS.gene22600:intron | 25.0% |
| ! | AACCTATAGAACATTACATA+GGG | + | chr5.2:3844028-3844047 | MS.gene22600:intron | 25.0% |
| ! | AAGCCAAAAAAATAAGAACT+TGG | - | chr5.2:3843706-3843725 | None:intergenic | 25.0% |
| ! | AAGTAGTTAAATGTTACCAA+AGG | - | chr5.2:3847436-3847455 | None:intergenic | 25.0% |
| ! | AATAAACTATTCTCTCAAGA+TGG | + | chr5.2:3844497-3844516 | MS.gene22600:intron | 25.0% |
| ! | AGTAGTTAAATGTTACCAAA+GGG | - | chr5.2:3847435-3847454 | None:intergenic | 25.0% |
| ! | AGTGAAGCAATCATATAAAT+GGG | + | chr5.2:3845301-3845320 | MS.gene22600:CDS | 25.0% |
| ! | ATAACAAATTTAAGTGCCTT+TGG | + | chr5.2:3844313-3844332 | MS.gene22600:CDS | 25.0% |
| ! | ATTTGAATAGTCTCTTGTTA+TGG | + | chr5.2:3845827-3845846 | MS.gene22600:intron | 25.0% |
| ! | CAAATATTACAAATGCAGAT+TGG | + | chr5.2:3847235-3847254 | MS.gene22600:intron | 25.0% |
| ! | CAATGTGTTAGTAACTAATA+TGG | + | chr5.2:3843478-3843497 | MS.gene22600:intron | 25.0% |
| ! | CCAAATTGAGAAATTAATTG+AGG | - | chr5.2:3843986-3844005 | None:intergenic | 25.0% |
| ! | CCTCAATTAATTTCTCAATT+TGG | + | chr5.2:3843983-3844002 | MS.gene22600:intron | 25.0% |
| ! | GACATGTTTGTGTATTTAAA+TGG | - | chr5.2:3847538-3847557 | None:intergenic | 25.0% |
| ! | GCCATACCATAATATTTATT+TGG | - | chr5.2:3846921-3846940 | None:intergenic | 25.0% |
| ! | TAATCATAGAAGGATATGAT+TGG | - | chr5.2:3844184-3844203 | None:intergenic | 25.0% |
| ! | TAGTGAAGCAATCATATAAA+TGG | + | chr5.2:3845300-3845319 | MS.gene22600:CDS | 25.0% |
| ! | TATCTGAAAACACAAGATAA+AGG | - | chr5.2:3847898-3847917 | None:intergenic | 25.0% |
| ! | TATGATTACATCATAATTGG+TGG | + | chr5.2:3844196-3844215 | MS.gene22600:CDS | 25.0% |
| ! | TCATGATTATATACAGATAC+AGG | + | chr5.2:3844121-3844140 | MS.gene22600:intron | 25.0% |
| ! | TGCTAGCAACATTTATTTAT+TGG | - | chr5.2:3844068-3844087 | None:intergenic | 25.0% |
| ! | TGTAAACAAGATTCTATGAA+CGG | - | chr5.2:3845552-3845571 | None:intergenic | 25.0% |
| !! | ATCTTGTTTACAAAAAGCAA+AGG | + | chr5.2:3845560-3845579 | MS.gene22600:CDS | 25.0% |
| !! | ATTGAAGTATTTGTGTGTTT+AGG | - | chr5.2:3847610-3847629 | None:intergenic | 25.0% |
| !! | TAATTCTTCTTTTTCTTGCT+GGG | + | chr5.2:3843341-3843360 | MS.gene22600:CDS | 25.0% |
| !! | TCATTCTAGAAAAAATCTTG+GGG | + | chr5.2:3847359-3847378 | MS.gene22600:CDS | 25.0% |
| !! | TTAATTCTTCTTTTTCTTGC+TGG | + | chr5.2:3843340-3843359 | MS.gene22600:CDS | 25.0% |
| !! | TTGTGTTTTCAGATATCTTA+TGG | + | chr5.2:3847903-3847922 | MS.gene22600:intron | 25.0% |
| !!! | ACAAATTCTAAAATGTACCT+TGG | - | chr5.2:3846802-3846821 | None:intergenic | 25.0% |
| !!! | CAAATTCTAAAATGTACCTT+GGG | - | chr5.2:3846801-3846820 | None:intergenic | 25.0% |
| !!! | CACTTAAATTTGTTATGTTC+GGG | - | chr5.2:3844309-3844328 | None:intergenic | 25.0% |
| !!! | GCACTTAAATTTGTTATGTT+CGG | - | chr5.2:3844310-3844329 | None:intergenic | 25.0% |
| !!! | TATTTTTAAGTTCAGCATGA+TGG | - | chr5.2:3845885-3845904 | None:intergenic | 25.0% |
| !!! | TTTTTATTAATTTGGTGTGC+AGG | + | chr5.2:3847936-3847955 | MS.gene22600:intron | 25.0% |
| AAATGAGTAAGTGCTAGAAA+AGG | - | chr5.2:3844838-3844857 | None:intergenic | 30.0% | |
| AACACTATCCCAAAATCATA+GGG | + | chr5.2:3844246-3844265 | MS.gene22600:CDS | 30.0% | |
| AACCCTATGTAATGTTCTAT+AGG | - | chr5.2:3844033-3844052 | None:intergenic | 30.0% | |
| AAGTTGGAAATTCTATACGA+TGG | + | chr5.2:3843774-3843793 | MS.gene22600:intron | 30.0% | |
| ACATGGTGAAGTATATTTAC+TGG | - | chr5.2:3845998-3846017 | None:intergenic | 30.0% | |
| ATATCAAATGGTTTGAGCTA+AGG | - | chr5.2:3843951-3843970 | None:intergenic | 30.0% | |
| ATGACTATATGGCATTATCA+TGG | + | chr5.2:3847661-3847680 | MS.gene22600:CDS | 30.0% | |
| ATTTATGTTGTTAGTGAAGC+TGG | + | chr5.2:3845263-3845282 | MS.gene22600:intron | 30.0% | |
| CAACCTATAGAACATTACAT+AGG | + | chr5.2:3844027-3844046 | MS.gene22600:intron | 30.0% | |
| CACAAATACTTCAATGTCTT+TGG | + | chr5.2:3847615-3847634 | MS.gene22600:CDS | 30.0% | |
| CTCAATTTGGACAAATCAAA+CGG | + | chr5.2:3843996-3844015 | MS.gene22600:intron | 30.0% | |
| GATAATGACTATAAGGTTCT+TGG | + | chr5.2:3847709-3847728 | MS.gene22600:CDS | 30.0% | |
| GGAAGGTAAAATATACAGTT+AGG | + | chr5.2:3847814-3847833 | MS.gene22600:intron | 30.0% | |
| TATCAAATGGTTTGAGCTAA+GGG | - | chr5.2:3843950-3843969 | None:intergenic | 30.0% | |
| TGCATTATATATGCAGATGT+CGG | + | chr5.2:3846054-3846073 | MS.gene22600:intron | 30.0% | |
| TGTTTAGGCAATAAATTCAC+TGG | - | chr5.2:3847595-3847614 | None:intergenic | 30.0% | |
| TTAAGTAAGCAATTTCGAAG+TGG | - | chr5.2:3843549-3843568 | None:intergenic | 30.0% | |
| TTGATATAACAAAGAGGCAA+AGG | - | chr5.2:3846161-3846180 | None:intergenic | 30.0% | |
| ! | AAATATATGAATGCCGACTA+TGG | - | chr5.2:3847167-3847186 | None:intergenic | 30.0% |
| ! | AAGGGGTCTAACAAATTTTA+AGG | - | chr5.2:3843932-3843951 | None:intergenic | 30.0% |
| ! | AATATATGAATGCCGACTAT+GGG | - | chr5.2:3847166-3847185 | None:intergenic | 30.0% |
| ! | TATAAAATCAATAAGGGTGC+CGG | + | chr5.2:3844862-3844881 | MS.gene22600:intron | 30.0% |
| ! | TTTTCGAAACTGTAAGATGT+AGG | + | chr5.2:3845671-3845690 | MS.gene22600:intron | 30.0% |
| !! | GGTTGTTGATAATGACTATA+AGG | + | chr5.2:3847702-3847721 | MS.gene22600:CDS | 30.0% |
| !! | GTAAAACATAGTTTGTTTGG+AGG | - | chr5.2:3843739-3843758 | None:intergenic | 30.0% |
| !!! | GGTCCAAGTTCTTATTTTTT+TGG | + | chr5.2:3843700-3843719 | MS.gene22600:intron | 30.0% |
| AAACAAGATTCTATGAACGG+TGG | - | chr5.2:3845549-3845568 | None:intergenic | 35.0% | |
| AAGCAAAGTAGCATGGTTTA+TGG | + | chr5.2:3843591-3843610 | MS.gene22600:intron | 35.0% | |
| AATAGAACTCCATGTGCAAT+TGG | - | chr5.2:3846435-3846454 | None:intergenic | 35.0% | |
| AATGAGATCATAGTATCAGC+TGG | + | chr5.2:3846507-3846526 | MS.gene22600:CDS | 35.0% | |
| AATGCCAACAACAGAAATGA+GGG | - | chr5.2:3846700-3846719 | None:intergenic | 35.0% | |
| ACTATATGGCATTATCATGG+TGG | + | chr5.2:3847664-3847683 | MS.gene22600:CDS | 35.0% | |
| ATAGGGCATACTTGAAACAA+GGG | + | chr5.2:3846478-3846497 | MS.gene22600:CDS | 35.0% | |
| ATCAAATGGTTTGAGCTAAG+GGG | - | chr5.2:3843949-3843968 | None:intergenic | 35.0% | |
| ATGCATCTTTCTAAGTCTCT+TGG | - | chr5.2:3847466-3847485 | None:intergenic | 35.0% | |
| ATGTTGCTAGCAATTGGAAA+AGG | + | chr5.2:3844076-3844095 | MS.gene22600:intron | 35.0% | |
| CAACACTATCCCAAAATCAT+AGG | + | chr5.2:3844245-3844264 | MS.gene22600:CDS | 35.0% | |
| CATACTTGAAACAAGGGATT+AGG | + | chr5.2:3846484-3846503 | MS.gene22600:CDS | 35.0% | |
| CATTATATATGCAGATGTCG+GGG | + | chr5.2:3846056-3846075 | MS.gene22600:intron | 35.0% | |
| CATTGTGCATGATATCAAAC+AGG | + | chr5.2:3846393-3846412 | MS.gene22600:intron | 35.0% | |
| CGAAATTGCTTACTTAACGA+GGG | + | chr5.2:3843552-3843571 | MS.gene22600:intron | 35.0% | |
| GAAGCAATCATATAAATGGG+TGG | + | chr5.2:3845304-3845323 | MS.gene22600:CDS | 35.0% | |
| GACTTAGAAAGATGCATACA+AGG | + | chr5.2:3847469-3847488 | MS.gene22600:CDS | 35.0% | |
| GATTACATCATAATTGGTGG+TGG | + | chr5.2:3844199-3844218 | MS.gene22600:CDS | 35.0% | |
| GCATTATATATGCAGATGTC+GGG | + | chr5.2:3846055-3846074 | MS.gene22600:intron | 35.0% | |
| GGACATAAACAGAGTTCATA+GGG | - | chr5.2:3846653-3846672 | None:intergenic | 35.0% | |
| GGTACAATCTTTGACCAAAA+TGG | + | chr5.2:3845455-3845474 | MS.gene22600:CDS | 35.0% | |
| GTGTTACATCAACCATTTGT+AGG | + | chr5.2:3846609-3846628 | MS.gene22600:CDS | 35.0% | |
| TAACATTAACCAATGCCCTA+GGG | + | chr5.2:3843636-3843655 | MS.gene22600:intron | 35.0% | |
| TAATGCCAACAACAGAAATG+AGG | - | chr5.2:3846701-3846720 | None:intergenic | 35.0% | |
| TCATATGTAAAGCCATTGTC+AGG | - | chr5.2:3845410-3845429 | None:intergenic | 35.0% | |
| TCGAAATTGCTTACTTAACG+AGG | + | chr5.2:3843551-3843570 | MS.gene22600:intron | 35.0% | |
| TCTACCTTTAATCATTCTCC+TGG | + | chr5.2:3847760-3847779 | MS.gene22600:CDS | 35.0% | |
| TGAATGCGCATCATAACAAA+GGG | + | chr5.2:3843521-3843540 | MS.gene22600:intron | 35.0% | |
| TGATCATATTCATGGGACTA+AGG | + | chr5.2:3845427-3845446 | MS.gene22600:CDS | 35.0% | |
| TGCATCTTTCTAAGTCTCTT+GGG | - | chr5.2:3847465-3847484 | None:intergenic | 35.0% | |
| TGTTCCAGGAGAATGATTAA+AGG | - | chr5.2:3847767-3847786 | None:intergenic | 35.0% | |
| TTGAATGCGCATCATAACAA+AGG | + | chr5.2:3843520-3843539 | MS.gene22600:intron | 35.0% | |
| ! | AGTTTGTTTGGAGGTCTAAA+AGG | - | chr5.2:3843730-3843749 | None:intergenic | 35.0% |
| ! | ATAGTCTCTTGTTATGGTGA+AGG | + | chr5.2:3845833-3845852 | MS.gene22600:intron | 35.0% |
| ! | ATCCCAAAATCATAGGGTTT+TGG | + | chr5.2:3844252-3844271 | MS.gene22600:CDS | 35.0% |
| ! | CAACGATTCATTTCTGAAGA+TGG | + | chr5.2:3844373-3844392 | MS.gene22600:CDS | 35.0% |
| ! | CACCAAAACCCTATGATTTT+GGG | - | chr5.2:3844257-3844276 | None:intergenic | 35.0% |
| ! | TTGCTTATCTGCATTTTGCT+CGG | + | chr5.2:3843417-3843436 | MS.gene22600:intron | 35.0% |
| !! | AATTTGGTGTGCAGGTATAT+GGG | + | chr5.2:3847944-3847963 | MS.gene22600:intron | 35.0% |
| !! | ATAAAATCAATAAGGGTGCC+GGG | + | chr5.2:3844863-3844882 | MS.gene22600:intron | 35.0% |
| !! | TAATTTGGTGTGCAGGTATA+TGG | + | chr5.2:3847943-3847962 | MS.gene22600:intron | 35.0% |
| AATCTTGGGGCCAATTTCAA+CGG | + | chr5.2:3847372-3847391 | MS.gene22600:CDS | 40.0% | |
| ACAGGTTCTCAAAGAGACTT+CGG | + | chr5.2:3846765-3846784 | MS.gene22600:CDS | 40.0% | |
| ACTATTCTCTCAAGATGGTC+AGG | + | chr5.2:3844502-3844521 | MS.gene22600:intron | 40.0% | |
| AGTTCAAAGCCAATTGCACA+TGG | + | chr5.2:3846423-3846442 | MS.gene22600:CDS | 40.0% | |
| ATGTTGTTAGTGAAGCTGGT+TGG | + | chr5.2:3845267-3845286 | MS.gene22600:intron | 40.0% | |
| CAAAGAGGCAAAGGTTAACA+TGG | - | chr5.2:3846152-3846171 | None:intergenic | 40.0% | |
| CAAAGGGTTCTCATTTGGAT+CGG | - | chr5.2:3847419-3847438 | None:intergenic | 40.0% | |
| CACGGATTCTTTAATTGCAG+GGG | - | chr5.2:3846995-3847014 | None:intergenic | 40.0% | |
| CACTCAACATCAGAAGTTGT+GGG | - | chr5.2:3846545-3846564 | None:intergenic | 40.0% | |
| CACTGATGTTATGTTGCCTA+AGG | - | chr5.2:3846587-3846606 | None:intergenic | 40.0% | |
| CATAGGGCATACTTGAAACA+AGG | + | chr5.2:3846477-3846496 | MS.gene22600:CDS | 40.0% | |
| CATATTCATGGGACTAAGGT+TGG | + | chr5.2:3845431-3845450 | MS.gene22600:CDS | 40.0% | |
| CATCAACCATTTGTAGGACA+AGG | + | chr5.2:3846615-3846634 | MS.gene22600:CDS | 40.0% | |
| CTAACATTAACCAATGCCCT+AGG | + | chr5.2:3843635-3843654 | MS.gene22600:intron | 40.0% | |
| CTGCTGATGAAACCACTTAA+AGG | + | chr5.2:3847993-3848012 | MS.gene22600:CDS | 40.0% | |
| CTTCTGATGTTGAGTGGAAT+AGG | + | chr5.2:3846549-3846568 | MS.gene22600:CDS | 40.0% | |
| GACATTCCTTGTCCTACAAA+TGG | - | chr5.2:3846624-3846643 | None:intergenic | 40.0% | |
| GAGACACTGTGATGACTATA+TGG | + | chr5.2:3847650-3847669 | MS.gene22600:CDS | 40.0% | |
| GCAACTATCTCTTCTTGACT+AGG | + | chr5.2:3843818-3843837 | MS.gene22600:intron | 40.0% | |
| GCACGGATTCTTTAATTGCA+GGG | - | chr5.2:3846996-3847015 | None:intergenic | 40.0% | |
| GGGACATAAACAGAGTTCAT+AGG | - | chr5.2:3846654-3846673 | None:intergenic | 40.0% | |
| GTTACCAAAGGGTTCTCATT+TGG | - | chr5.2:3847424-3847443 | None:intergenic | 40.0% | |
| GTTGTTGGCATTACCAACTT+TGG | + | chr5.2:3846708-3846727 | MS.gene22600:CDS | 40.0% | |
| GTTTCCCTCATTTCTGTTGT+TGG | + | chr5.2:3846693-3846712 | MS.gene22600:CDS | 40.0% | |
| TATCATGGTGGTTGTCAAGT+TGG | + | chr5.2:3847676-3847695 | MS.gene22600:CDS | 40.0% | |
| TCAATGGCAATCAGCAGTTA+GGG | + | chr5.2:3845358-3845377 | MS.gene22600:CDS | 40.0% | |
| TCAGAAATGAATCGTTGAGC+AGG | - | chr5.2:3844370-3844389 | None:intergenic | 40.0% | |
| TCCAAATGACCCGTTGAAAT+TGG | - | chr5.2:3847385-3847404 | None:intergenic | 40.0% | |
| TGAGTCACACAGAAAGTTGT+CGG | + | chr5.2:3844895-3844914 | MS.gene22600:intron | 40.0% | |
| TGCACATGGAGTTCTATTCA+AGG | + | chr5.2:3846437-3846456 | MS.gene22600:CDS | 40.0% | |
| TGCACGGATTCTTTAATTGC+AGG | - | chr5.2:3846997-3847016 | None:intergenic | 40.0% | |
| TGTGACTCATTTGTAAAGCC+CGG | - | chr5.2:3844884-3844903 | None:intergenic | 40.0% | |
| TGTGCATGATATCAAACAGG+TGG | + | chr5.2:3846396-3846415 | MS.gene22600:intron | 40.0% | |
| TGTTGTTAGTGAAGCTGGTT+GGG | + | chr5.2:3845268-3845287 | MS.gene22600:intron | 40.0% | |
| TTCAATGTAGCTGCCAAAGT+TGG | - | chr5.2:3846724-3846743 | None:intergenic | 40.0% | |
| TTCTATTCAAGGATGCACGA+GGG | + | chr5.2:3846448-3846467 | MS.gene22600:CDS | 40.0% | |
| TTCTTTAATTGCAGGGGAGT+CGG | - | chr5.2:3846989-3847008 | None:intergenic | 40.0% | |
| TTTCTAAGTCTCTTGGGTCT+TGG | - | chr5.2:3847459-3847478 | None:intergenic | 40.0% | |
| ! | ATCAGAAAGTGCAACACCAA+AGG | - | chr5.2:3844332-3844351 | None:intergenic | 40.0% |
| ! | CAGTGTGTCTTTGACCATTT+TGG | - | chr5.2:3845472-3845491 | None:intergenic | 40.0% |
| ! | GAGTATCGCAATCTTTGAGT+TGG | - | chr5.2:3845162-3845181 | None:intergenic | 40.0% |
| ! | GCACCAAAACCCTATGATTT+TGG | - | chr5.2:3844258-3844277 | None:intergenic | 40.0% |
| ! | TCTCATTTGGATCGGTGTTT+CGG | - | chr5.2:3847411-3847430 | None:intergenic | 40.0% |
| ! | TTTTGCTAACTAGTGCCCTA+GGG | - | chr5.2:3843654-3843673 | None:intergenic | 40.0% |
| !! | AGCAGTTAGGGATGGATTAT+TGG | + | chr5.2:3845370-3845389 | MS.gene22600:CDS | 40.0% |
| !! | AGGGATGGATTATTGGAAGT+AGG | + | chr5.2:3845377-3845396 | MS.gene22600:CDS | 40.0% |
| !! | ATTGCTTTTGCTATGGCTTC+TGG | - | chr5.2:3847295-3847314 | None:intergenic | 40.0% |
| !! | TCGCAATCTTTGAGTTGGAT+AGG | - | chr5.2:3845157-3845176 | None:intergenic | 40.0% |
| !! | TTGCTTTTGCTATGGCTTCT+GGG | - | chr5.2:3847294-3847313 | None:intergenic | 40.0% |
| AAATGAGGGAAACCTCTACC+GGG | - | chr5.2:3846686-3846705 | None:intergenic | 45.0% | |
| AACTCAAGAGCTCGTGTTCT+AGG | + | chr5.2:3844403-3844422 | MS.gene22600:CDS | 45.0% | |
| AATGAATCGTTGAGCAGGAG+AGG | - | chr5.2:3844365-3844384 | None:intergenic | 45.0% | |
| AGCATCATAACAGTGGCTTG+AGG | - | chr5.2:3847793-3847812 | None:intergenic | 45.0% | |
| ATAGTATCAGCTGGTGCACT+AGG | + | chr5.2:3846516-3846535 | MS.gene22600:CDS | 45.0% | |
| ATCTTGGGGCCAATTTCAAC+GGG | + | chr5.2:3847373-3847392 | MS.gene22600:CDS | 45.0% | |
| ATTCATGGGACTAAGGTTGG+AGG | + | chr5.2:3845434-3845453 | MS.gene22600:CDS | 45.0% | |
| CAAAGTTGCCACCAAAGCAA+AGG | + | chr5.2:3847266-3847285 | MS.gene22600:CDS | 45.0% | |
| CAAGCCACTGTTATGATGCT+TGG | + | chr5.2:3847793-3847812 | MS.gene22600:CDS | 45.0% | |
| CCACAACTTCTGATGTTGAG+TGG | + | chr5.2:3846543-3846562 | MS.gene22600:CDS | 45.0% | |
| CCACTCAACATCAGAAGTTG+TGG | - | chr5.2:3846546-3846565 | None:intergenic | 45.0% | |
| CCACTGTTATGATGCTTGGA+AGG | + | chr5.2:3847797-3847816 | MS.gene22600:CDS | 45.0% | |
| CCTTCCAAGCATCATAACAG+TGG | - | chr5.2:3847800-3847819 | None:intergenic | 45.0% | |
| CGAATGTGAGATCCCATAGT+CGG | + | chr5.2:3847151-3847170 | MS.gene22600:intron | 45.0% | |
| CGATCCAAATGAGAACCCTT+TGG | + | chr5.2:3847417-3847436 | MS.gene22600:CDS | 45.0% | |
| CTTGGACCAAGAAGCTTTCA+GGG | + | chr5.2:3847330-3847349 | MS.gene22600:CDS | 45.0% | |
| GAAATGAGGGAAACCTCTAC+CGG | - | chr5.2:3846687-3846706 | None:intergenic | 45.0% | |
| GATATGCTCACAGGACAACA+TGG | - | chr5.2:3846015-3846034 | None:intergenic | 45.0% | |
| GCCAATTTCAACGGGTCATT+TGG | + | chr5.2:3847381-3847400 | MS.gene22600:CDS | 45.0% | |
| GGATCTCACATTCGTGACAA+CGG | - | chr5.2:3847145-3847164 | None:intergenic | 45.0% | |
| GGTCAGGAGTAAGTCTACTA+TGG | + | chr5.2:3844518-3844537 | MS.gene22600:intron | 45.0% | |
| GGTGGAAGTTGTTTGAATGC+TGG | + | chr5.2:3844427-3844446 | MS.gene22600:CDS | 45.0% | |
| GTAGGTGTATTGCCTGACAA+TGG | + | chr5.2:3845395-3845414 | MS.gene22600:CDS | 45.0% | |
| GTCAATGGCAATCAGCAGTT+AGG | + | chr5.2:3845357-3845376 | MS.gene22600:CDS | 45.0% | |
| GTCGACTAAGATATGCTCAC+AGG | - | chr5.2:3846024-3846043 | None:intergenic | 45.0% | |
| GTTCTATTCAAGGATGCACG+AGG | + | chr5.2:3846447-3846466 | MS.gene22600:CDS | 45.0% | |
| TAAATGGGTGGAGAGAGTAG+TGG | + | chr5.2:3845316-3845335 | MS.gene22600:CDS | 45.0% | |
| TAGGAGCAGCATATCACCTT+AGG | + | chr5.2:3846568-3846587 | MS.gene22600:CDS | 45.0% | |
| TCTTTAATTGCAGGGGAGTC+GGG | - | chr5.2:3846988-3847007 | None:intergenic | 45.0% | |
| TTACGTACCTTACGTAGCGA+GGG | - | chr5.2:3844471-3844490 | None:intergenic | 45.0% | |
| TTGGACCAAGAAGCTTTCAG+GGG | + | chr5.2:3847331-3847350 | MS.gene22600:CDS | 45.0% | |
| ! | ACACACTGCAGCTGATCTTT+TGG | + | chr5.2:3845484-3845503 | MS.gene22600:CDS | 45.0% |
| ! | CTTCGGAATGTTTTCTCCCA+AGG | + | chr5.2:3846782-3846801 | MS.gene22600:CDS | 45.0% |
| ! | GTCTCTTTGAGAACCTGTGA+AGG | - | chr5.2:3846763-3846782 | None:intergenic | 45.0% |
| ! | GTTTTGCTAACTAGTGCCCT+AGG | - | chr5.2:3843655-3843674 | None:intergenic | 45.0% |
| ! | TGGAGAGAGTAGTGGCATTT+TGG | + | chr5.2:3845324-3845343 | MS.gene22600:CDS | 45.0% |
| !! | ATGGTGGTTGTCAAGTTGGT+AGG | + | chr5.2:3847680-3847699 | MS.gene22600:CDS | 45.0% |
| !! | GCGTCGATTCAAGCATAAGA+CGG | + | chr5.2:3843679-3843698 | MS.gene22600:intron | 45.0% |
| !! | GTTATGTTCGGGTTGCCATA+AGG | - | chr5.2:3844298-3844317 | None:intergenic | 45.0% |
| !! | TGCTTTTGCTATGGCTTCTG+GGG | - | chr5.2:3847293-3847312 | None:intergenic | 45.0% |
| !! | TGGTGGTTGTCAAGTTGGTA+GGG | + | chr5.2:3847681-3847700 | MS.gene22600:CDS | 45.0% |
| !! | TTAATATATAAAATCAATAA+GGG | + | chr5.2:3844856-3844875 | MS.gene22600:intron | 5.0% |
| !! | TTTAATATATAAAATCAATA+AGG | + | chr5.2:3844855-3844874 | MS.gene22600:intron | 5.0% |
| !!! | AAAATAAAAATCTATTTTTA+TGG | + | chr5.2:3847090-3847109 | MS.gene22600:intron | 5.0% |
| AATCGTTGAGCAGGAGAGGA+AGG | - | chr5.2:3844361-3844380 | None:intergenic | 50.0% | |
| AATGAGGGAAACCTCTACCG+GGG | - | chr5.2:3846685-3846704 | None:intergenic | 50.0% | |
| AGCTACATTGAAGCCGCTAG+CGG | + | chr5.2:3846732-3846751 | MS.gene22600:CDS | 50.0% | |
| ATCCACCCCTGAAAGCTTCT+TGG | - | chr5.2:3847339-3847358 | None:intergenic | 50.0% | |
| ATGCACGAGGGACAGAACAT+AGG | + | chr5.2:3846460-3846479 | MS.gene22600:CDS | 50.0% | |
| CATGCATTGCGCGTAATCGA+CGG | + | chr5.2:3847736-3847755 | MS.gene22600:CDS | 50.0% | |
| CGATGGCAATGTAGCTCAAC+TGG | + | chr5.2:3843791-3843810 | MS.gene22600:intron | 50.0% | |
| CGTCTGACTGCATGAATGCA+CGG | - | chr5.2:3847013-3847032 | None:intergenic | 50.0% | |
| CGTGCATTCATGCAGTCAGA+CGG | + | chr5.2:3847011-3847030 | MS.gene22600:intron | 50.0% | |
| GATTGCCATTGACGCATAGG+AGG | - | chr5.2:3845350-3845369 | None:intergenic | 50.0% | |
| GCTGATTGCCATTGACGCAT+AGG | - | chr5.2:3845353-3845372 | None:intergenic | 50.0% | |
| GCTTGGACCAAGAAGCTTTC+AGG | + | chr5.2:3847329-3847348 | MS.gene22600:CDS | 50.0% | |
| GTTACGTACCTTACGTAGCG+AGG | - | chr5.2:3844472-3844491 | None:intergenic | 50.0% | |
| TAACTAGTGCCCTAGGGCAT+TGG | - | chr5.2:3843648-3843667 | None:intergenic | 50.0% | |
| TGCACGAGGGACAGAACATA+GGG | + | chr5.2:3846461-3846480 | MS.gene22600:CDS | 50.0% | |
| TGGCAATCAGCAGTTAGGGA+TGG | + | chr5.2:3845362-3845381 | MS.gene22600:CDS | 50.0% | |
| TGGGATAGTGTTGCAGCCAA+AGG | - | chr5.2:3844238-3844257 | None:intergenic | 50.0% | |
| TTATGTCCCATCTCCTTCCC+CGG | + | chr5.2:3846665-3846684 | MS.gene22600:CDS | 50.0% | |
| TTTGGCCTCCTATGCGTCAA+TGG | + | chr5.2:3845342-3845361 | MS.gene22600:CDS | 50.0% | |
| ! | GTGGCTTGAGGATTTGTTCC+AGG | - | chr5.2:3847781-3847800 | None:intergenic | 50.0% |
| ! | TCAAGAGCTCGTGTTCTAGG+TGG | + | chr5.2:3844406-3844425 | MS.gene22600:CDS | 50.0% |
| !! | ATAATTGGTGGTGGCACTGC+AGG | + | chr5.2:3844208-3844227 | MS.gene22600:CDS | 50.0% |
| !! | GAACGTGGTGGATCACCTTA+TGG | + | chr5.2:3844280-3844299 | MS.gene22600:CDS | 50.0% |
| !! | TAATTGGTGGTGGCACTGCA+GGG | + | chr5.2:3844209-3844228 | MS.gene22600:CDS | 50.0% |
| !!! | AGGGTTTTGGTGCTTGAACG+TGG | + | chr5.2:3844265-3844284 | MS.gene22600:CDS | 50.0% |
| !!! | GTTTTGGTGCTTGAACGTGG+TGG | + | chr5.2:3844268-3844287 | MS.gene22600:CDS | 50.0% |
| GACCAAGAAGCTTTCAGGGG+TGG | + | chr5.2:3847334-3847353 | MS.gene22600:CDS | 55.0% | |
| GCAGTCAGACGGTAGTCGTT+TGG | + | chr5.2:3847022-3847041 | MS.gene22600:intron | 55.0% | |
| ! | AGAGCTCGTGTTCTAGGTGG+TGG | + | chr5.2:3844409-3844428 | MS.gene22600:CDS | 55.0% |
| ! | CGTCGATTACGCGCAATGCA+TGG | - | chr5.2:3847738-3847757 | None:intergenic | 55.0% |
| ! | TCTGGGGTCCTTTGCTTTGG+TGG | - | chr5.2:3847277-3847296 | None:intergenic | 55.0% |
| !! | GCTTCTGGGGTCCTTTGCTT+TGG | - | chr5.2:3847280-3847299 | None:intergenic | 55.0% |
| ACCTCTACCGGGGAAGGAGA+TGG | - | chr5.2:3846675-3846694 | None:intergenic | 60.0% | |
| AGGGAAACCTCTACCGGGGA+AGG | - | chr5.2:3846681-3846700 | None:intergenic | 60.0% | |
| CCTCTACCGGGGAAGGAGAT+GGG | - | chr5.2:3846674-3846693 | None:intergenic | 60.0% | |
| GTGCAAGCCCTCGCTACGTA+AGG | + | chr5.2:3844461-3844480 | MS.gene22600:CDS | 60.0% | |
| TGTGAAGGTTGCGCCGCTAG+CGG | - | chr5.2:3846748-3846767 | None:intergenic | 60.0% | |
| ! | TGGCACTGCAGGGTGTCCTT+TGG | + | chr5.2:3844219-3844238 | MS.gene22600:CDS | 60.0% |
| CCCATCTCCTTCCCCGGTAG+AGG | + | chr5.2:3846671-3846690 | MS.gene22600:CDS | 65.0% | |
| GCTAGCGGCGCAACCTTCAC+AGG | + | chr5.2:3846747-3846766 | MS.gene22600:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 3843319 | 3848012 | 3843319 | ID=MS.gene22600 |
| chr5.2 | mRNA | 3843319 | 3848012 | 3843319 | ID=MS.gene22600.t1;Parent=MS.gene22600 |
| chr5.2 | exon | 3843319 | 3843400 | 3843319 | ID=MS.gene22600.t1.exon1;Parent=MS.gene22600.t1 |
| chr5.2 | CDS | 3843319 | 3843400 | 3843319 | ID=cds.MS.gene22600.t1;Parent=MS.gene22600.t1 |
| chr5.2 | exon | 3844143 | 3844482 | 3844143 | ID=MS.gene22600.t1.exon2;Parent=MS.gene22600.t1 |
| chr5.2 | CDS | 3844143 | 3844482 | 3844143 | ID=cds.MS.gene22600.t1;Parent=MS.gene22600.t1 |
| chr5.2 | exon | 3845277 | 3845581 | 3845277 | ID=MS.gene22600.t1.exon3;Parent=MS.gene22600.t1 |
| chr5.2 | CDS | 3845277 | 3845581 | 3845277 | ID=cds.MS.gene22600.t1;Parent=MS.gene22600.t1 |
| chr5.2 | exon | 3846415 | 3846803 | 3846415 | ID=MS.gene22600.t1.exon4;Parent=MS.gene22600.t1 |
| chr5.2 | CDS | 3846415 | 3846803 | 3846415 | ID=cds.MS.gene22600.t1;Parent=MS.gene22600.t1 |
| chr5.2 | exon | 3847253 | 3847818 | 3847253 | ID=MS.gene22600.t1.exon5;Parent=MS.gene22600.t1 |
| chr5.2 | CDS | 3847253 | 3847818 | 3847253 | ID=cds.MS.gene22600.t1;Parent=MS.gene22600.t1 |
| chr5.2 | exon | 3847958 | 3848012 | 3847958 | ID=MS.gene22600.t1.exon6;Parent=MS.gene22600.t1 |
| chr5.2 | CDS | 3847958 | 3848012 | 3847958 | ID=cds.MS.gene22600.t1;Parent=MS.gene22600.t1 |
| Gene Sequence |
| Protein sequence |
