AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23639

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23639.t1 MTR_8g035520 96.049 329 13 0 1 329 1 329 0.0 651
MS.gene23639.t1 MTR_8g035540 77.044 318 69 1 13 326 1 318 3.16e-180 501
MS.gene23639.t1 MTR_6g464510 50.760 329 148 6 3 325 7 327 9.36e-111 325
MS.gene23639.t1 MTR_6g464280 50.779 321 142 5 14 325 12 325 1.75e-105 311
MS.gene23639.t1 MTR_6g464320 47.546 326 155 5 12 328 11 329 1.37e-97 291
MS.gene23639.t1 MTR_0007s0520 47.289 332 154 6 3 326 8 326 1.14e-96 289
MS.gene23639.t1 MTR_1g102160 45.679 324 159 7 13 326 11 327 3.54e-92 278
MS.gene23639.t1 MTR_1g102170 46.250 320 151 6 10 320 27 334 1.93e-91 276
MS.gene23639.t1 MTR_6g464120 47.386 306 153 4 14 316 17 317 1.09e-90 280
MS.gene23639.t1 MTR_8g035500 42.138 318 178 4 11 324 2 317 3.20e-89 270
MS.gene23639.t1 MTR_1g111280 37.294 303 176 6 21 316 34 329 2.23e-56 187
MS.gene23639.t1 MTR_7g406880 34.877 324 190 7 21 325 29 350 7.47e-52 175
MS.gene23639.t1 MTR_6g065120 35.333 300 171 7 40 327 50 338 9.77e-50 169
MS.gene23639.t1 MTR_6g065430 35.640 289 171 5 40 324 50 327 8.84e-49 166
MS.gene23639.t1 MTR_7g107040 34.076 314 195 7 21 329 15 321 1.87e-48 165
MS.gene23639.t1 MTR_6g065370 34.114 299 175 7 40 327 49 336 4.38e-48 165
MS.gene23639.t1 MTR_0007s0480 50.000 172 77 3 164 327 3 173 2.22e-47 157
MS.gene23639.t1 MTR_6g065270 34.641 306 168 8 40 327 47 338 4.85e-47 162
MS.gene23639.t1 MTR_6g065110 33.220 295 177 6 42 326 52 336 5.73e-47 162
MS.gene23639.t1 MTR_6g065400 33.445 299 177 7 40 327 49 336 2.59e-46 160
MS.gene23639.t1 MTR_4g050140 34.098 305 192 6 26 326 18 317 1.07e-45 158
MS.gene23639.t1 MTR_1g012430 35.507 276 162 9 17 290 9 270 3.28e-45 156
MS.gene23639.t1 MTR_4g086510 34.921 315 183 9 21 325 16 318 1.23e-44 155
MS.gene23639.t1 MTR_7g056207 34.076 314 187 8 21 325 48 350 1.33e-43 153
MS.gene23639.t1 MTR_3g101420 32.907 313 192 9 21 326 15 316 1.60e-43 152
MS.gene23639.t1 MTR_4g086540 32.237 304 170 8 26 325 31 302 5.35e-41 145
MS.gene23639.t1 MTR_1g082210 30.650 323 186 8 25 326 37 342 2.11e-39 142
MS.gene23639.t1 MTR_4g086480 31.731 312 196 8 21 326 20 320 3.33e-39 141
MS.gene23639.t1 MTR_6g065340 32.441 299 164 9 40 327 60 331 1.63e-37 137
MS.gene23639.t1 MTR_5g005920 31.065 338 211 12 1 322 1 332 2.28e-37 136
MS.gene23639.t1 MTR_1g089310 34.043 235 134 5 72 301 114 332 1.81e-34 129
MS.gene23639.t1 MTR_1g089310 34.043 235 134 5 72 301 98 316 1.84e-34 129
MS.gene23639.t1 MTR_4g086470 33.788 293 177 10 38 324 36 317 1.31e-33 126
MS.gene23639.t1 MTR_3g012440 31.752 274 171 6 64 326 74 342 1.71e-33 126
MS.gene23639.t1 MTR_7g093950 29.032 310 183 8 38 325 53 347 4.84e-33 125
MS.gene23639.t1 MTR_3g450680 32.399 321 187 11 21 324 24 331 5.62e-31 119
MS.gene23639.t1 MTR_5g005850 35.714 224 126 7 1 213 1 217 4.29e-30 117
MS.gene23639.t1 MTR_1g105020 30.032 313 203 9 21 325 16 320 3.18e-29 114
MS.gene23639.t1 MTR_5g005900 29.796 245 151 8 4 238 3 236 3.73e-28 112
MS.gene23639.t1 MTR_8g040860 30.408 319 198 11 21 328 24 329 1.73e-27 110
MS.gene23639.t1 MTR_1g104930 40.642 187 102 5 21 204 20 200 9.35e-27 108
MS.gene23639.t1 MTR_6g022710 29.167 288 160 8 78 325 159 442 1.93e-25 106
MS.gene23639.t1 MTR_7g051020 33.962 318 184 14 21 324 20 325 6.16e-25 103
MS.gene23639.t1 MTR_1g104933 40.764 157 87 3 50 204 46 198 1.30e-21 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23639.t1 AT2G45600 54.375 320 134 4 14 329 9 320 7.33e-121 351
MS.gene23639.t1 AT2G45610 46.505 329 167 4 1 325 1 324 8.34e-103 305
MS.gene23639.t1 AT5G62180 44.379 338 165 9 1 327 1 326 3.07e-87 265
MS.gene23639.t1 AT1G68620 38.971 272 154 7 13 282 24 285 2.21e-52 176
MS.gene23639.t1 AT5G16080 37.201 293 173 5 21 309 36 321 6.16e-52 175
MS.gene23639.t1 AT5G06570 36.735 294 171 8 21 304 18 306 2.40e-40 144
MS.gene23639.t1 AT5G06570 36.735 294 171 8 21 304 18 306 2.40e-40 144
MS.gene23639.t1 AT5G06570 36.735 294 171 8 21 304 33 321 2.66e-40 144
MS.gene23639.t1 AT5G06570 36.735 294 171 8 21 304 33 321 2.66e-40 144
MS.gene23639.t1 AT5G23530 30.769 312 185 10 25 324 34 326 6.33e-38 138
MS.gene23639.t1 AT1G47480 31.949 313 189 9 23 328 18 313 2.66e-37 135
MS.gene23639.t1 AT3G63010 30.699 329 183 10 25 328 37 345 1.07e-36 135
MS.gene23639.t1 AT5G27320 30.897 301 169 8 25 303 37 320 1.67e-35 132
MS.gene23639.t1 AT3G48690 33.482 224 141 4 21 240 13 232 7.15e-35 129
MS.gene23639.t1 AT1G49640 35.789 190 113 3 21 208 14 196 7.99e-34 127
MS.gene23639.t1 AT3G48700 34.222 225 130 5 27 240 19 236 3.96e-33 125
MS.gene23639.t1 AT3G05120 30.584 291 174 7 25 299 37 315 1.50e-31 121
MS.gene23639.t1 AT1G49660 35.233 193 122 3 17 207 8 199 4.68e-30 117
MS.gene23639.t1 AT1G49650 34.225 187 120 3 21 206 69 253 7.43e-30 117
MS.gene23639.t1 AT1G19190 33.871 186 119 3 22 204 14 198 1.35e-29 115
MS.gene23639.t1 AT2G03550 36.066 183 113 2 22 204 14 192 5.04e-29 114
MS.gene23639.t1 AT5G14310 30.479 292 156 8 78 325 150 438 5.72e-27 110
MS.gene23639.t1 AT3G27320 28.014 282 124 5 48 250 58 339 3.55e-24 102
MS.gene23639.t1 AT3G27320 31.401 207 108 3 78 250 165 371 6.50e-24 102

Find 109 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTACAACAATCGGTATT+TGG 0.173341 8.1:-67540719 None:intergenic
AAAGGAGCTAGTGAAGATTT+TGG 0.262688 8.1:+67541229 MS.gene23639:CDS
TATATCACATCCGAAACTTT+TGG 0.276208 8.1:-67541134 None:intergenic
CTGCCGAGGTGCTTTGTTAA+TGG 0.290098 8.1:+67541176 MS.gene23639:CDS
GAAGAAGGCGGTGGATGGTT+TGG 0.298827 8.1:-67540594 None:intergenic
TTTAGATAAAACAGTTTGAT+TGG 0.326527 8.1:-67540523 None:intergenic
CTTGATTTCGAGGAATTCAT+AGG 0.332300 8.1:-67540436 None:intergenic
CATAAGATCACTTGCTGATA+AGG 0.336937 8.1:-67541060 None:intergenic
AAGAAGGCGGTGGATGGTTT+GGG 0.338643 8.1:-67540593 None:intergenic
GGCTACAACAATCGGTATTT+GGG 0.352791 8.1:-67540718 None:intergenic
AGGTGTTTGTGGCTGTGTTT+AGG 0.375709 8.1:-67540554 None:intergenic
TCGGAGGATGGTGGCACGGT+GGG 0.395070 8.1:-67540498 None:intergenic
CTTTGATAACTGCTTCTTGA+TGG 0.402538 8.1:+67540875 MS.gene23639:CDS
AAGCATTAATTGAGTACGTT+AGG 0.420290 8.1:+67541333 MS.gene23639:CDS
ATAAGCCCTTGGATCTTAAG+AGG 0.421207 8.1:-67540963 None:intergenic
GGGAGCTTAGCTGCGGAAGA+AGG 0.436075 8.1:-67540609 None:intergenic
GTATTGTAATCCAAAAGTTT+CGG 0.440947 8.1:+67541124 MS.gene23639:CDS
GGAAGGAGATGGAGGAAGGA+TGG 0.441614 8.1:-67540671 None:intergenic
TTAGATAAAACAGTTTGATT+GGG 0.442247 8.1:-67540522 None:intergenic
ATTAATGCTTGTGCCTTAGC+AGG 0.443498 8.1:-67541320 None:intergenic
TGGCTACGGTGGGGATCCCT+TGG 0.444444 8.1:+67541196 MS.gene23639:CDS
CAGGGTTGAGCTTGATTTCG+AGG 0.446420 8.1:-67540446 None:intergenic
AAAGTTTCGGATGTGATATA+CGG 0.451670 8.1:+67541137 MS.gene23639:CDS
ATCGGAGGATGGTGGCACGG+TGG 0.453890 8.1:-67540499 None:intergenic
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.1:+67540636 MS.gene23639:CDS
CGTTAGGAAATTTATTTCCT+CGG 0.460385 8.1:+67541349 MS.gene23639:CDS
TTTCTTGTGAGGGAACCGTC+AGG 0.462902 8.1:-67540465 None:intergenic
TATCAGCAAGTGATCTTATG+TGG 0.466303 8.1:+67541063 MS.gene23639:CDS
ATAAGATCACTTGCTGATAA+GGG 0.469063 8.1:-67541059 None:intergenic
CTACGGTGGGGATCCCTTGG+TGG 0.471238 8.1:+67541199 MS.gene23639:CDS
CCTCTCATTCTCTACTTCCA+TGG 0.472077 8.1:+67540630 MS.gene23639:CDS
GTGGGGATCCCTTGGTGGAT+AGG 0.478308 8.1:+67541204 MS.gene23639:CDS
GCAGCAGGGAGACGGTGCTC+TGG 0.489342 8.1:-67540762 None:intergenic
CGGAGGATGGTGGCACGGTG+GGG 0.494269 8.1:-67540497 None:intergenic
GACGTTGTCGTTTCTTGTGA+GGG 0.494899 8.1:-67540475 None:intergenic
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.1:+67541182 MS.gene23639:CDS
GTGATATACGGTGAGAAGAT+CGG 0.499961 8.1:+67541149 MS.gene23639:CDS
CGGTATTTGGGCGGCGAAGG+TGG 0.500026 8.1:-67540706 None:intergenic
TTTGCCTGAGGGCAAAGATC+GGG 0.502336 8.1:+67541094 MS.gene23639:CDS
GAGCATTCATTATAAGCCCT+TGG 0.503256 8.1:-67540974 None:intergenic
ACAGCGTCATCATAGGCAGC+AGG 0.503505 8.1:-67540777 None:intergenic
AATCGGTATTTGGGCGGCGA+AGG 0.504867 8.1:-67540709 None:intergenic
CTCTCTCCTCTTAAGATCCA+AGG 0.508284 8.1:+67540957 MS.gene23639:CDS
TTCTTGATGGGAAGTAGTGC+AGG 0.508384 8.1:+67540888 MS.gene23639:CDS
GATGCGAATGGAGGTGTTTG+TGG 0.509539 8.1:-67540565 None:intergenic
TGAGGATGGGTTTCATGCTG+TGG 0.514157 8.1:+67541286 MS.gene23639:CDS
TCCCTTGGTGGATAGGCAAA+AGG 0.515897 8.1:+67541211 MS.gene23639:CDS
TGGTGGAAGGAGATGGAGGA+AGG 0.515934 8.1:-67540675 None:intergenic
TCAACTGAGGCTACAACAAT+CGG 0.516064 8.1:-67540726 None:intergenic
GAAGCTCGGATTCTGTCCTC+TGG 0.518185 8.1:-67541013 None:intergenic
ATCCAAGTGTCTCTGATCCA+TGG 0.519484 8.1:+67540835 MS.gene23639:CDS
TAAAACAGTTTGATTGGGAT+CGG 0.521222 8.1:-67540517 None:intergenic
TGAATCAACAGCGTCATCAT+AGG 0.525186 8.1:-67540784 None:intergenic
TTTGATAACTGCTTCTTGAT+GGG 0.528311 8.1:+67540876 MS.gene23639:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.528480 8.1:+67541185 MS.gene23639:CDS
TGATCCCGATCTTTGCCCTC+AGG 0.528666 8.1:-67541098 None:intergenic
CTTTGCCTGAGGGCAAAGAT+CGG 0.530032 8.1:+67541093 MS.gene23639:CDS
AGATGGAGGAAGGATGGTAG+CGG 0.533188 8.1:-67540665 None:intergenic
ACAACATTGGTGGAAGGAGA+TGG 0.537016 8.1:-67540682 None:intergenic
TCCACGTTGTCTCTAATCCA+TGG 0.538847 8.1:-67540852 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.1:+67541186 MS.gene23639:CDS
CATCATAGGCAGCAGGGAGA+CGG 0.539880 8.1:-67540770 None:intergenic
CTGCGGAAGAAGGCGGTGGA+TGG 0.542195 8.1:-67540599 None:intergenic
CCATGGAAGTAGAGAATGAG+AGG 0.543683 8.1:-67540630 None:intergenic
GGACGTTGTCGTTTCTTGTG+AGG 0.544412 8.1:-67540476 None:intergenic
ACGCTGTTGATTCACTGCTC+TGG 0.544781 8.1:+67540793 MS.gene23639:CDS
CGGCGAAGGTGGAACAACAT+TGG 0.547001 8.1:-67540695 None:intergenic
TTCTTGTGAGGGAACCGTCA+GGG 0.551838 8.1:-67540464 None:intergenic
TTGATTTCGAGGAATTCATA+GGG 0.554513 8.1:-67540435 None:intergenic
AGAAGATCGGACGGCTGCCG+AGG 0.559266 8.1:+67541162 MS.gene23639:CDS
GTTTGATTGGGATCGGAGGA+TGG 0.560295 8.1:-67540510 None:intergenic
GTGGGCTCTATCTTTGCCTG+AGG 0.562373 8.1:+67541082 MS.gene23639:CDS
CGAAGGTGGAACAACATTGG+TGG 0.568199 8.1:-67540692 None:intergenic
GGGATCGGAGGATGGTGGCA+CGG 0.570716 8.1:-67540502 None:intergenic
AAGGCGGTGGATGGTTTGGG+AGG 0.574865 8.1:-67540590 None:intergenic
TGGGCTCTATCTTTGCCTGA+GGG 0.574915 8.1:+67541083 MS.gene23639:CDS
GGAGGCACGTGGGGTGCACG+TGG 0.576950 8.1:+67541250 MS.gene23639:CDS
ATCGTTAATGAAACGAAGCT+CGG 0.583980 8.1:-67541027 None:intergenic
ATCCATGGATCAGAGACACT+TGG 0.585274 8.1:-67540837 None:intergenic
GTTTGGGAGGAAGATGCGAA+TGG 0.591093 8.1:-67540577 None:intergenic
GGAACTCTTTGATCCTGCTA+AGG 0.595599 8.1:+67541307 MS.gene23639:CDS
TGGGAGGAAGATGCGAATGG+AGG 0.596067 8.1:-67540574 None:intergenic
AACAGTTTGATTGGGATCGG+AGG 0.597036 8.1:-67540514 None:intergenic
GACGGTGCTCTGGTGTGAGA+CGG 0.599030 8.1:-67540752 None:intergenic
ATCAGCAAGTGATCTTATGT+GGG 0.600680 8.1:+67541064 MS.gene23639:CDS
TCTCTCCTCTTAAGATCCAA+GGG 0.605883 8.1:+67540958 MS.gene23639:CDS
GAGGAATTCATAGGGATCGA+TGG 0.607240 8.1:-67540427 None:intergenic
CTCATTCTCTACTTCCATGG+TGG 0.607938 8.1:+67540633 MS.gene23639:CDS
GGTAACATAGCGTATTTCGC+AGG 0.611649 8.1:+67540912 MS.gene23639:CDS
AGCTTAGCTGCGGAAGAAGG+CGG 0.614328 8.1:-67540606 None:intergenic
TCTTAAGAGGAGAGAGATCG+AGG 0.616358 8.1:-67540950 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.1:+67541187 MS.gene23639:CDS
CAGCGTCATCATAGGCAGCA+GGG 0.627063 8.1:-67540776 None:intergenic
GGTGGAACAACATTGGTGGA+AGG 0.628176 8.1:-67540688 None:intergenic
GAAATCAAGCTCAACCCTGA+CGG 0.629353 8.1:+67540450 MS.gene23639:CDS
TTAGCTGCGGAAGAAGGCGG+TGG 0.632038 8.1:-67540603 None:intergenic
ACATTGGTGGAAGGAGATGG+AGG 0.648420 8.1:-67540679 None:intergenic
CATGGAAGTAGAGAATGAGA+GGG 0.650043 8.1:-67540629 None:intergenic
TGATTGGGATCGGAGGATGG+TGG 0.653749 8.1:-67540507 None:intergenic
GAATTCATAGGGATCGATGG+TGG 0.658016 8.1:-67540424 None:intergenic
AGCGGAAGAAACCACCACCA+TGG 0.663365 8.1:-67540647 None:intergenic
TACAACAATCGGTATTTGGG+CGG 0.668880 8.1:-67540715 None:intergenic
TTGATGGGAAGTAGTGCAGG+TGG 0.669706 8.1:+67540891 MS.gene23639:CDS
AATGAGAGGGAGCTTAGCTG+CGG 0.679381 8.1:-67540616 None:intergenic
TATACGGTGAGAAGATCGGA+CGG 0.716166 8.1:+67541153 MS.gene23639:CDS
TGTGAGACGGTGATCAACTG+AGG 0.747102 8.1:-67540739 None:intergenic
TAGCCATTAACAAAGCACCT+CGG 0.752093 8.1:-67541179 None:intergenic
TCCATGGATTAGAGACAACG+TGG 0.752565 8.1:+67540851 MS.gene23639:CDS
AGAGGACTAAGTATCAACCG+AGG 0.780180 8.1:-67541366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGATAAAACAGTTTGATT+GGG - chr8.1:67540525-67540544 None:intergenic 20.0%
!! TTTAGATAAAACAGTTTGAT+TGG - chr8.1:67540526-67540545 None:intergenic 20.0%
! GTATTGTAATCCAAAAGTTT+CGG + chr8.1:67541124-67541143 MS.gene23639:CDS 25.0%
!!! ATAATGAATGCTCCATTTTT+TGG + chr8.1:67540984-67541003 MS.gene23639:CDS 25.0%
AAAGTTTCGGATGTGATATA+CGG + chr8.1:67541137-67541156 MS.gene23639:CDS 30.0%
AAGCATTAATTGAGTACGTT+AGG + chr8.1:67541333-67541352 MS.gene23639:CDS 30.0%
CGTTAGGAAATTTATTTCCT+CGG + chr8.1:67541349-67541368 MS.gene23639:CDS 30.0%
TAAAACAGTTTGATTGGGAT+CGG - chr8.1:67540520-67540539 None:intergenic 30.0%
TTGATTTCGAGGAATTCATA+GGG - chr8.1:67540438-67540457 None:intergenic 30.0%
! ATAAGATCACTTGCTGATAA+GGG - chr8.1:67541062-67541081 None:intergenic 30.0%
! TATATCACATCCGAAACTTT+TGG - chr8.1:67541137-67541156 None:intergenic 30.0%
! TTTGATAACTGCTTCTTGAT+GGG + chr8.1:67540876-67540895 MS.gene23639:CDS 30.0%
ATCAGCAAGTGATCTTATGT+GGG + chr8.1:67541064-67541083 MS.gene23639:CDS 35.0%
ATCGTTAATGAAACGAAGCT+CGG - chr8.1:67541030-67541049 None:intergenic 35.0%
CTTGATTTCGAGGAATTCAT+AGG - chr8.1:67540439-67540458 None:intergenic 35.0%
TATCAGCAAGTGATCTTATG+TGG + chr8.1:67541063-67541082 MS.gene23639:CDS 35.0%
! AAAGGAGCTAGTGAAGATTT+TGG + chr8.1:67541229-67541248 MS.gene23639:CDS 35.0%
! CATAAGATCACTTGCTGATA+AGG - chr8.1:67541063-67541082 None:intergenic 35.0%
! CTTTGATAACTGCTTCTTGA+TGG + chr8.1:67540875-67540894 MS.gene23639:CDS 35.0%
!!! AGTCTGTTTTTTGTGAGGAT+GGG + chr8.1:67541273-67541292 MS.gene23639:CDS 35.0%
!!! ATGAATGCTCCATTTTTTGG+TGG + chr8.1:67540987-67541006 MS.gene23639:CDS 35.0%
!!! TGAATGCTCCATTTTTTGGT+GGG + chr8.1:67540988-67541007 MS.gene23639:CDS 35.0%
AGGCTACAACAATCGGTATT+TGG - chr8.1:67540722-67540741 None:intergenic 40.0%
ATAAGCCCTTGGATCTTAAG+AGG - chr8.1:67540966-67540985 None:intergenic 40.0%
ATTAATGCTTGTGCCTTAGC+AGG - chr8.1:67541323-67541342 None:intergenic 40.0%
CATGGAAGTAGAGAATGAGA+GGG - chr8.1:67540632-67540651 None:intergenic 40.0%
GAGCATTCATTATAAGCCCT+TGG - chr8.1:67540977-67540996 None:intergenic 40.0%
GGCTACAACAATCGGTATTT+GGG - chr8.1:67540721-67540740 None:intergenic 40.0%
GTGATATACGGTGAGAAGAT+CGG + chr8.1:67541149-67541168 MS.gene23639:CDS 40.0%
TACAACAATCGGTATTTGGG+CGG - chr8.1:67540718-67540737 None:intergenic 40.0%
TCAACTGAGGCTACAACAAT+CGG - chr8.1:67540729-67540748 None:intergenic 40.0%
TCTCTCCTCTTAAGATCCAA+GGG + chr8.1:67540958-67540977 MS.gene23639:CDS 40.0%
TGAATCAACAGCGTCATCAT+AGG - chr8.1:67540787-67540806 None:intergenic 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.1:67541182-67541201 MS.gene23639:CDS 40.0%
! TAGCCATTAACAAAGCACCT+CGG - chr8.1:67541182-67541201 None:intergenic 40.0%
!!! ATCGATGGTGGAGTTTTGTT+TGG - chr8.1:67540415-67540434 None:intergenic 40.0%
!!! ATGGTGGAGTTTTGTTTGGA+AGG - chr8.1:67540411-67540430 None:intergenic 40.0%
!!! GAATGCTCCATTTTTTGGTG+GGG + chr8.1:67540989-67541008 MS.gene23639:CDS 40.0%
!!! GAGTCTGTTTTTTGTGAGGA+TGG + chr8.1:67541272-67541291 MS.gene23639:CDS 40.0%
AACAGTTTGATTGGGATCGG+AGG - chr8.1:67540517-67540536 None:intergenic 45.0%
ACAACATTGGTGGAAGGAGA+TGG - chr8.1:67540685-67540704 None:intergenic 45.0%
AGGTGTTTGTGGCTGTGTTT+AGG - chr8.1:67540557-67540576 None:intergenic 45.0%
ATCCAAGTGTCTCTGATCCA+TGG + chr8.1:67540835-67540854 MS.gene23639:CDS 45.0%
ATCCATGGATCAGAGACACT+TGG - chr8.1:67540840-67540859 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.1:67540636-67540655 MS.gene23639:CDS 45.0%
CCATGGAAGTAGAGAATGAG+AGG - chr8.1:67540633-67540652 None:intergenic 45.0%
CCTCTCATTCTCTACTTCCA+TGG + chr8.1:67540630-67540649 MS.gene23639:CDS 45.0%
CTCATTCTCTACTTCCATGG+TGG + chr8.1:67540633-67540652 MS.gene23639:CDS 45.0%
CTCTCTCCTCTTAAGATCCA+AGG + chr8.1:67540957-67540976 MS.gene23639:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.1:67541187-67541206 MS.gene23639:CDS 45.0%
GAAATCAAGCTCAACCCTGA+CGG + chr8.1:67540450-67540469 MS.gene23639:CDS 45.0%
GAATTCATAGGGATCGATGG+TGG - chr8.1:67540427-67540446 None:intergenic 45.0%
GAGGAATTCATAGGGATCGA+TGG - chr8.1:67540430-67540449 None:intergenic 45.0%
GGAACTCTTTGATCCTGCTA+AGG + chr8.1:67541307-67541326 MS.gene23639:CDS 45.0%
GGTAACATAGCGTATTTCGC+AGG + chr8.1:67540912-67540931 MS.gene23639:CDS 45.0%
TATACGGTGAGAAGATCGGA+CGG + chr8.1:67541153-67541172 MS.gene23639:CDS 45.0%
TCCACGTTGTCTCTAATCCA+TGG - chr8.1:67540855-67540874 None:intergenic 45.0%
TCTTAAGAGGAGAGAGATCG+AGG - chr8.1:67540953-67540972 None:intergenic 45.0%
TTCTTGATGGGAAGTAGTGC+AGG + chr8.1:67540888-67540907 MS.gene23639:CDS 45.0%
! AGACACTTGGATTTTGCGCT+TGG - chr8.1:67540827-67540846 None:intergenic 45.0%
! GACACTTGGATTTTGCGCTT+GGG - chr8.1:67540826-67540845 None:intergenic 45.0%
! GACGTTGTCGTTTCTTGTGA+GGG - chr8.1:67540478-67540497 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.1:67541186-67541205 MS.gene23639:CDS 45.0%
! GGAGCTAGTGAAGATTTTGG+AGG + chr8.1:67541232-67541251 MS.gene23639:CDS 45.0%
! TCCTTTTGCCTATCCACCAA+GGG - chr8.1:67541215-67541234 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.1:67541185-67541204 MS.gene23639:CDS 45.0%
!! TCCATGGATTAGAGACAACG+TGG + chr8.1:67540851-67540870 MS.gene23639:CDS 45.0%
!! TGAAGATTTTGGAGGCACGT+GGG + chr8.1:67541240-67541259 MS.gene23639:CDS 45.0%
!!! CGTGGAGTCTGTTTTTTGTG+AGG + chr8.1:67541268-67541287 MS.gene23639:CDS 45.0%
AAGAAGGCGGTGGATGGTTT+GGG - chr8.1:67540596-67540615 None:intergenic 50.0%
AATGAGAGGGAGCTTAGCTG+CGG - chr8.1:67540619-67540638 None:intergenic 50.0%
ACATTGGTGGAAGGAGATGG+AGG - chr8.1:67540682-67540701 None:intergenic 50.0%
AGATGGAGGAAGGATGGTAG+CGG - chr8.1:67540668-67540687 None:intergenic 50.0%
CAGGGTTGAGCTTGATTTCG+AGG - chr8.1:67540449-67540468 None:intergenic 50.0%
CGAAGGTGGAACAACATTGG+TGG - chr8.1:67540695-67540714 None:intergenic 50.0%
CTCTGGACCCCACCAAAAAA+TGG - chr8.1:67540999-67541018 None:intergenic 50.0%
CTTTGCCTGAGGGCAAAGAT+CGG + chr8.1:67541093-67541112 MS.gene23639:CDS 50.0%
GGTGGAACAACATTGGTGGA+AGG - chr8.1:67540691-67540710 None:intergenic 50.0%
GTTTGATTGGGATCGGAGGA+TGG - chr8.1:67540513-67540532 None:intergenic 50.0%
GTTTGGGAGGAAGATGCGAA+TGG - chr8.1:67540580-67540599 None:intergenic 50.0%
TGGGCTCTATCTTTGCCTGA+GGG + chr8.1:67541083-67541102 MS.gene23639:CDS 50.0%
TGTGAGACGGTGATCAACTG+AGG - chr8.1:67540742-67540761 None:intergenic 50.0%
TTCTTGTGAGGGAACCGTCA+GGG - chr8.1:67540467-67540486 None:intergenic 50.0%
TTGATGGGAAGTAGTGCAGG+TGG + chr8.1:67540891-67540910 MS.gene23639:CDS 50.0%
TTTCTTGTGAGGGAACCGTC+AGG - chr8.1:67540468-67540487 None:intergenic 50.0%
TTTGCCTGAGGGCAAAGATC+GGG + chr8.1:67541094-67541113 MS.gene23639:CDS 50.0%
! CTCCTTTTGCCTATCCACCA+AGG - chr8.1:67541216-67541235 None:intergenic 50.0%
! CTGCCGAGGTGCTTTGTTAA+TGG + chr8.1:67541176-67541195 MS.gene23639:CDS 50.0%
! GGACGTTGTCGTTTCTTGTG+AGG - chr8.1:67540479-67540498 None:intergenic 50.0%
! TCCCTTGGTGGATAGGCAAA+AGG + chr8.1:67541211-67541230 MS.gene23639:CDS 50.0%
! TGAGGATGGGTTTCATGCTG+TGG + chr8.1:67541286-67541305 MS.gene23639:CDS 50.0%
!! ACGCTGTTGATTCACTGCTC+TGG + chr8.1:67540793-67540812 MS.gene23639:CDS 50.0%
!! GAAGATTTTGGAGGCACGTG+GGG + chr8.1:67541241-67541260 MS.gene23639:CDS 50.0%
!! GATGCGAATGGAGGTGTTTG+TGG - chr8.1:67540568-67540587 None:intergenic 50.0%
!! GTGAAGATTTTGGAGGCACG+TGG + chr8.1:67541239-67541258 MS.gene23639:CDS 50.0%
!!! CATTTTTTGGTGGGGTCCAG+AGG + chr8.1:67540997-67541016 MS.gene23639:CDS 50.0%
AATCGGTATTTGGGCGGCGA+AGG - chr8.1:67540712-67540731 None:intergenic 55.0%
ACAGCGTCATCATAGGCAGC+AGG - chr8.1:67540780-67540799 None:intergenic 55.0%
AGCGGAAGAAACCACCACCA+TGG - chr8.1:67540650-67540669 None:intergenic 55.0%
AGCTTAGCTGCGGAAGAAGG+CGG - chr8.1:67540609-67540628 None:intergenic 55.0%
CAGCGTCATCATAGGCAGCA+GGG - chr8.1:67540779-67540798 None:intergenic 55.0%
CATCATAGGCAGCAGGGAGA+CGG - chr8.1:67540773-67540792 None:intergenic 55.0%
CGGCGAAGGTGGAACAACAT+TGG - chr8.1:67540698-67540717 None:intergenic 55.0%
GAAGAAGGCGGTGGATGGTT+TGG - chr8.1:67540597-67540616 None:intergenic 55.0%
GAAGCTCGGATTCTGTCCTC+TGG - chr8.1:67541016-67541035 None:intergenic 55.0%
GGAAGGAGATGGAGGAAGGA+TGG - chr8.1:67540674-67540693 None:intergenic 55.0%
GTGGGCTCTATCTTTGCCTG+AGG + chr8.1:67541082-67541101 MS.gene23639:CDS 55.0%
TGATCCCGATCTTTGCCCTC+AGG - chr8.1:67541101-67541120 None:intergenic 55.0%
TGATTGGGATCGGAGGATGG+TGG - chr8.1:67540510-67540529 None:intergenic 55.0%
TGGGAGGAAGATGCGAATGG+AGG - chr8.1:67540577-67540596 None:intergenic 55.0%
TGGTGGAAGGAGATGGAGGA+AGG - chr8.1:67540678-67540697 None:intergenic 55.0%
GACGGTGCTCTGGTGTGAGA+CGG - chr8.1:67540755-67540774 None:intergenic 60.0%
GGGAGCTTAGCTGCGGAAGA+AGG - chr8.1:67540612-67540631 None:intergenic 60.0%
TTAGCTGCGGAAGAAGGCGG+TGG - chr8.1:67540606-67540625 None:intergenic 60.0%
! AAGGCGGTGGATGGTTTGGG+AGG - chr8.1:67540593-67540612 None:intergenic 60.0%
! GTGGGGATCCCTTGGTGGAT+AGG + chr8.1:67541204-67541223 MS.gene23639:CDS 60.0%
AGAAGATCGGACGGCTGCCG+AGG + chr8.1:67541162-67541181 MS.gene23639:CDS 65.0%
CGGTATTTGGGCGGCGAAGG+TGG - chr8.1:67540709-67540728 None:intergenic 65.0%
CTACGGTGGGGATCCCTTGG+TGG + chr8.1:67541199-67541218 MS.gene23639:CDS 65.0%
CTGCGGAAGAAGGCGGTGGA+TGG - chr8.1:67540602-67540621 None:intergenic 65.0%
TGGCTACGGTGGGGATCCCT+TGG + chr8.1:67541196-67541215 MS.gene23639:CDS 65.0%
! ATCGGAGGATGGTGGCACGG+TGG - chr8.1:67540502-67540521 None:intergenic 65.0%
! GGGATCGGAGGATGGTGGCA+CGG - chr8.1:67540505-67540524 None:intergenic 65.0%
! TCGGAGGATGGTGGCACGGT+GGG - chr8.1:67540501-67540520 None:intergenic 65.0%
GCAGCAGGGAGACGGTGCTC+TGG - chr8.1:67540765-67540784 None:intergenic 70.0%
! CGGAGGATGGTGGCACGGTG+GGG - chr8.1:67540500-67540519 None:intergenic 70.0%
! GGAGGCACGTGGGGTGCACG+TGG + chr8.1:67541250-67541269 MS.gene23639:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 67540393 67541382 67540393 ID=MS.gene23639
chr8.1 mRNA 67540393 67541382 67540393 ID=MS.gene23639.t1;Parent=MS.gene23639
chr8.1 exon 67540393 67541382 67540393 ID=MS.gene23639.t1.exon1;Parent=MS.gene23639.t1
chr8.1 CDS 67540393 67541382 67540393 ID=cds.MS.gene23639.t1;Parent=MS.gene23639.t1
Gene Sequence

>MS.gene23639

ATGGCAGAATCATCACCTTCCAAACAAAACTCCACCATCGATCCCTATGAATTCCTCGAAATCAAGCTCAACCCTGACGGTTCCCTCACAAGAAACGACAACGTCCCCACCGTGCCACCATCCTCCGATCCCAATCAAACTGTTTTATCTAAAGATATCATCCTAAACACAGCCACAAACACCTCCATTCGCATCTTCCTCCCAAACCATCCACCGCCTTCTTCCGCAGCTAAGCTCCCTCTCATTCTCTACTTCCATGGTGGTGGTTTCTTCCGCTACCATCCTTCCTCCATCTCCTTCCACCAATGTTGTTCCACCTTCGCCGCCCAAATACCGATTGTTGTAGCCTCAGTTGATCACCGTCTCACACCAGAGCACCGTCTCCCTGCTGCCTATGATGACGCTGTTGATTCACTGCTCTGGCTCAGAGCCCAAGCGCAAAATCCAAGTGTCTCTGATCCATGGATTAGAGACAACGTGGACTTTGATAACTGCTTCTTGATGGGAAGTAGTGCAGGTGGTAACATAGCGTATTTCGCAGGTCTACGCGCTCTTGACCTCGATCTCTCTCCTCTTAAGATCCAAGGGCTTATAATGAATGCTCCATTTTTTGGTGGGGTCCAGAGGACAGAATCCGAGCTTCGTTTCATTAACGATTATATACTACCCTTATCAGCAAGTGATCTTATGTGGGCTCTATCTTTGCCTGAGGGCAAAGATCGGGATCACGTGTATTGTAATCCAAAAGTTTCGGATGTGATATACGGTGAGAAGATCGGACGGCTGCCGAGGTGCTTTGTTAATGGCTACGGTGGGGATCCCTTGGTGGATAGGCAAAAGGAGCTAGTGAAGATTTTGGAGGCACGTGGGGTGCACGTGGAGTCTGTTTTTTGTGAGGATGGGTTTCATGCTGTGGAACTCTTTGATCCTGCTAAGGCACAAGCATTAATTGAGTACGTTAGGAAATTTATTTCCTCGGTTGATACTTAG
Protein sequence

>MS.gene23639.t1

MAESSPSKQNSTIDPYEFLEIKLNPDGSLTRNDNVPTVPPSSDPNQTVLSKDIILNTATNTSIRIFLPNHPPPSSAAKLPLILYFHGGGFFRYHPSSISFHQCCSTFAAQIPIVVASVDHRLTPEHRLPAAYDDAVDSLLWLRAQAQNPSVSDPWIRDNVDFDNCFLMGSSAGGNIAYFAGLRALDLDLSPLKIQGLIMNAPFFGGVQRTESELRFINDYILPLSASDLMWALSLPEGKDRDHVYCNPKVSDVIYGEKIGRLPRCFVNGYGGDPLVDRQKELVKILEARGVHVESVFCEDGFHAVELFDPAKAQALIEYVRKFISSVDT