AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23641

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23641.t1 MTR_8g035540 96.341 328 12 0 14 341 1 328 0.0 647
MS.gene23641.t1 MTR_8g035520 75.000 332 78 2 1 332 1 327 2.98e-178 497
MS.gene23641.t1 MTR_6g464510 48.765 324 150 5 12 329 13 326 7.36e-106 313
MS.gene23641.t1 MTR_6g464280 48.457 324 147 6 15 329 12 324 4.80e-102 303
MS.gene23641.t1 MTR_6g464320 46.626 326 154 6 13 329 11 325 3.39e-94 283
MS.gene23641.t1 MTR_8g035500 42.236 322 178 5 12 330 2 318 3.84e-93 280
MS.gene23641.t1 MTR_1g102160 47.546 326 154 7 14 331 11 327 4.75e-93 280
MS.gene23641.t1 MTR_1g102170 46.462 325 153 6 9 326 25 335 8.38e-93 280
MS.gene23641.t1 MTR_6g464120 46.302 311 155 5 15 322 17 318 3.02e-87 272
MS.gene23641.t1 MTR_0007s0520 44.109 331 160 7 7 329 11 324 5.55e-87 265
MS.gene23641.t1 MTR_1g111280 35.714 322 180 9 22 329 34 342 5.40e-53 178
MS.gene23641.t1 MTR_7g406880 33.028 327 194 8 22 329 29 349 5.51e-52 176
MS.gene23641.t1 MTR_6g065430 33.758 314 188 6 27 333 31 331 1.43e-48 166
MS.gene23641.t1 MTR_6g065370 34.122 296 173 6 45 329 49 333 5.54e-48 165
MS.gene23641.t1 MTR_6g065400 34.459 296 172 6 45 329 49 333 8.38e-48 164
MS.gene23641.t1 MTR_4g050140 34.528 307 188 6 27 329 18 315 2.88e-46 160
MS.gene23641.t1 MTR_6g065110 32.660 297 180 5 48 334 53 339 3.28e-46 160
MS.gene23641.t1 MTR_6g065270 33.779 299 174 5 45 329 47 335 2.84e-45 158
MS.gene23641.t1 MTR_6g065120 34.007 297 173 6 45 329 50 335 5.29e-45 157
MS.gene23641.t1 MTR_7g107040 33.851 322 185 9 22 332 15 319 1.02e-44 156
MS.gene23641.t1 MTR_4g086510 34.494 316 185 9 22 329 16 317 2.87e-43 152
MS.gene23641.t1 MTR_1g012430 36.864 236 132 8 18 252 9 228 6.44e-43 151
MS.gene23641.t1 MTR_3g101420 32.381 315 191 10 22 329 15 314 1.42e-41 147
MS.gene23641.t1 MTR_0007s0480 45.238 168 83 3 170 329 4 170 2.02e-41 142
MS.gene23641.t1 MTR_7g056207 33.230 322 195 8 22 336 48 356 2.67e-41 147
MS.gene23641.t1 MTR_3g012440 41.081 185 107 2 69 253 74 256 2.43e-39 142
MS.gene23641.t1 MTR_1g082210 30.303 330 188 10 26 334 37 345 3.38e-38 139
MS.gene23641.t1 MTR_4g086480 33.125 320 187 10 22 332 20 321 4.82e-37 135
MS.gene23641.t1 MTR_1g089310 37.557 221 115 6 77 291 98 301 1.71e-36 135
MS.gene23641.t1 MTR_1g089310 37.557 221 115 6 77 291 114 317 1.84e-36 135
MS.gene23641.t1 MTR_5g005920 38.947 190 110 4 27 213 26 212 4.28e-36 133
MS.gene23641.t1 MTR_6g065340 30.380 316 177 8 27 329 43 328 5.79e-36 133
MS.gene23641.t1 MTR_7g093950 32.443 262 154 6 77 329 99 346 1.09e-35 132
MS.gene23641.t1 MTR_4g086540 35.263 190 111 3 27 216 31 208 1.22e-34 129
MS.gene23641.t1 MTR_1g105020 31.230 317 194 12 22 328 16 318 1.61e-33 126
MS.gene23641.t1 MTR_3g450680 31.790 324 189 11 22 329 24 331 8.43e-33 124
MS.gene23641.t1 MTR_4g086470 32.184 261 156 7 39 295 36 279 1.09e-31 121
MS.gene23641.t1 MTR_5g005850 33.884 242 143 7 22 256 21 252 7.54e-31 119
MS.gene23641.t1 MTR_1g104930 41.579 190 100 4 22 209 20 200 4.68e-30 117
MS.gene23641.t1 MTR_5g005900 36.410 195 114 5 22 211 17 206 4.41e-29 114
MS.gene23641.t1 MTR_7g051020 40.526 190 105 4 22 209 20 203 3.10e-28 112
MS.gene23641.t1 MTR_8g040860 35.678 199 121 4 22 218 24 217 7.51e-27 108
MS.gene23641.t1 MTR_6g022710 27.875 287 171 5 83 335 159 443 1.16e-26 110
MS.gene23641.t1 MTR_1g104933 41.401 157 86 3 55 209 46 198 1.07e-23 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23641.t1 AT2G45600 52.568 331 139 5 15 340 9 326 1.15e-120 351
MS.gene23641.t1 AT2G45610 46.562 320 164 4 13 329 8 323 4.82e-102 303
MS.gene23641.t1 AT5G62180 48.780 328 150 8 15 333 9 327 2.68e-95 286
MS.gene23641.t1 AT1G68620 39.062 256 142 5 4 256 14 258 3.40e-53 178
MS.gene23641.t1 AT5G16080 35.452 299 178 5 22 316 36 323 2.40e-52 176
MS.gene23641.t1 AT5G06570 35.390 308 184 8 22 321 18 318 3.44e-38 139
MS.gene23641.t1 AT5G06570 35.390 308 184 8 22 321 18 318 3.44e-38 139
MS.gene23641.t1 AT5G23530 31.348 319 188 10 26 334 34 331 4.35e-38 139
MS.gene23641.t1 AT5G06570 35.390 308 184 8 22 321 33 333 6.48e-38 139
MS.gene23641.t1 AT5G06570 35.390 308 184 8 22 321 33 333 6.48e-38 139
MS.gene23641.t1 AT1G49640 36.979 192 108 4 22 211 14 194 5.75e-37 135
MS.gene23641.t1 AT3G63010 29.825 342 197 9 21 340 32 352 1.16e-35 133
MS.gene23641.t1 AT5G27320 29.154 319 195 8 26 329 37 339 2.35e-35 132
MS.gene23641.t1 AT3G48690 32.895 228 141 5 22 245 13 232 6.49e-35 130
MS.gene23641.t1 AT1G47480 33.333 246 145 7 8 253 4 230 2.56e-33 125
MS.gene23641.t1 AT1G49650 36.126 191 115 4 22 211 69 253 2.42e-32 124
MS.gene23641.t1 AT1G19190 32.420 219 137 5 21 233 12 225 1.01e-31 121
MS.gene23641.t1 AT3G48700 33.186 226 135 6 28 245 19 236 1.64e-31 121
MS.gene23641.t1 AT1G49660 35.714 196 119 4 18 211 8 198 1.84e-31 120
MS.gene23641.t1 AT3G05120 31.119 286 173 7 26 299 37 310 1.89e-31 121
MS.gene23641.t1 AT2G03550 37.968 187 108 3 23 209 14 192 2.85e-31 120
MS.gene23641.t1 AT5G14310 32.669 251 128 6 42 253 106 354 3.07e-30 120
MS.gene23641.t1 AT3G27320 33.178 214 106 4 77 253 124 337 6.07e-28 113
MS.gene23641.t1 AT3G27320 33.178 214 106 4 77 253 156 369 7.86e-28 113

Find 117 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCAACAATGGCAGGAATT+TGG 0.210540 8.1:-67513097 None:intergenic
TGTTTGGAATTAGGTGAATT+TGG 0.218605 8.1:-67512765 None:intergenic
TTGCCAAGGTGCTTTGTTAA+TGG 0.257297 8.1:+67513554 MS.gene23641:CDS
AAAGGAGCTAGCGAAGATTT+TGG 0.271352 8.1:+67513607 MS.gene23641:CDS
GAGGAAGACGGTGGAGGGTT+CGG 0.288881 8.1:-67512972 None:intergenic
TGAAATCTTTGATCATTCTA+AGG 0.290499 8.1:+67513685 MS.gene23641:CDS
CACAAATTCGCCACCGCAAC+CGG 0.311175 8.1:+67512890 MS.gene23641:CDS
ATTGTGCTTTGTTTGGAATT+AGG 0.318456 8.1:-67512774 None:intergenic
AGCACGTAGACCCGTGAAAT+AGG 0.319272 8.1:-67513300 None:intergenic
GTAGAGAATGATGGGGAGTT+TGG 0.319640 8.1:-67513000 None:intergenic
AGGAAGACGGTGGAGGGTTC+GGG 0.325103 8.1:-67512971 None:intergenic
GGCAACAATGGCAGGAATTT+GGG 0.333621 8.1:-67513096 None:intergenic
GGGATCCATTGTGCTTTGTT+TGG 0.344187 8.1:-67512781 None:intergenic
GCAGGGATGGTGGAAGATAA+GGG 0.378351 8.1:-67513060 None:intergenic
AGCAGGGATGGTGGAAGATA+AGG 0.379203 8.1:-67513061 None:intergenic
TAAGGGAGGAAGGGTGGTAG+AGG 0.393535 8.1:-67513043 None:intergenic
CGGTTGCGGTGGCGAATTTG+TGG 0.395908 8.1:-67512889 None:intergenic
GACTGAATCCGAGCTTCGTT+TGG 0.401433 8.1:+67513397 MS.gene23641:CDS
ACAACTTTGGATCACGTATA+CGG 0.411261 8.1:+67513515 MS.gene23641:CDS
TCGAAGGATGGTGGCACGGT+GGG 0.424218 8.1:-67512864 None:intergenic
ACTGCATCGTCGTAGGCTGC+TGG 0.427315 8.1:-67513155 None:intergenic
TATGATCCCTCGAATCTTAA+CGG 0.430500 8.1:-67513342 None:intergenic
ATGCAGTTGATTCTCTTCTC+TGG 0.431764 8.1:+67513171 MS.gene23641:CDS
CTTTGATAAATGTTTCTTGA+TGG 0.434816 8.1:+67513253 MS.gene23641:CDS
TTTCTTGTTAGTGAACCATC+AGG 0.441242 8.1:-67512831 None:intergenic
TGGTCCCGGTCTTTGCCCTC+AGG 0.451278 8.1:-67513476 None:intergenic
GCAGCGGAGGAAGACGGTGG+AGG 0.452270 8.1:-67512978 None:intergenic
CTCTCTCCCGTTAAGATTCG+AGG 0.456764 8.1:+67513335 MS.gene23641:CDS
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.1:+67513014 MS.gene23641:CDS
ATACCCATCCTCATCAAAAC+AGG 0.463187 8.1:-67513654 None:intergenic
GTATTGCAATCCAACAACTT+TGG 0.464198 8.1:+67513502 MS.gene23641:CDS
GGAAGATAAGGGAGGAAGGG+TGG 0.467019 8.1:-67513049 None:intergenic
TTTGATAAATGTTTCTTGAT+GGG 0.469837 8.1:+67513254 MS.gene23641:CDS
GCTGCTGGGAGGCGATGCTC+AGG 0.470036 8.1:-67513140 None:intergenic
TTGGGCAGCTAATGTGGAGC+AGG 0.470169 8.1:-67513078 None:intergenic
ATGATCCCTCGAATCTTAAC+GGG 0.471461 8.1:-67513341 None:intergenic
TGGCTACGGTGGGGATCCAT+TGG 0.473221 8.1:+67513574 MS.gene23641:CDS
ATCGAAGGATGGTGGCACGG+TGG 0.483039 8.1:-67512865 None:intergenic
TATACGTGATCCAAAGTTGT+TGG 0.491009 8.1:-67513512 None:intergenic
CCATGGAAGTAGAGAATGAT+GGG 0.492333 8.1:-67513008 None:intergenic
ATGAGATCACCTGCTGGTAA+TGG 0.493022 8.1:-67513437 None:intergenic
ATCGTTAACCAAACGAAGCT+CGG 0.493769 8.1:-67513405 None:intergenic
CCCATCATTCTCTACTTCCA+TGG 0.494966 8.1:+67513008 MS.gene23641:CDS
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.1:+67513560 MS.gene23641:CDS
GATTGCAATACTCGTGGTCC+CGG 0.503398 8.1:-67513490 None:intergenic
TCAACAGAGGCAACAATGGC+AGG 0.505210 8.1:-67513104 None:intergenic
CTGCATCGTCGTAGGCTGCT+GGG 0.506617 8.1:-67513154 None:intergenic
CAGCTAATGTGGAGCAGGGA+TGG 0.506859 8.1:-67513073 None:intergenic
ACCATGGAAGTAGAGAATGA+TGG 0.507797 8.1:-67513009 None:intergenic
GGTTGCGGTGGCGAATTTGT+GGG 0.510694 8.1:-67512888 None:intergenic
CTACGGTGGGGATCCATTGG+TGG 0.515205 8.1:+67513577 MS.gene23641:CDS
TGGTGGAAGATAAGGGAGGA+AGG 0.516872 8.1:-67513053 None:intergenic
AGGAATTTGGGCAGCTAATG+TGG 0.521371 8.1:-67513084 None:intergenic
TCCATTGGTGGATAAGCAAA+AGG 0.523499 8.1:+67513589 MS.gene23641:CDS
CGTATATTGCCATTACCAGC+AGG 0.526449 8.1:+67513428 MS.gene23641:CDS
ATCCAACGGAATCTGATCCA+TGG 0.529983 8.1:+67513213 MS.gene23641:CDS
TCTTAACGGGAGAGAGATCA+AGG 0.533892 8.1:-67513328 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.1:+67513564 MS.gene23641:CDS
CACGTATACGGTGAAAAGAT+CGG 0.541877 8.1:+67513527 MS.gene23641:CDS
TCCACATGGTCTCTGATCCA+TGG 0.542444 8.1:-67513230 None:intergenic
ATCCATGGATCAGATTCCGT+TGG 0.545679 8.1:-67513215 None:intergenic
GGCTGCACACGGGGTGCATG+TGG 0.546061 8.1:+67513628 MS.gene23641:CDS
GTTTGCCTGAGGGCAAAGAC+CGG 0.546161 8.1:+67513471 MS.gene23641:CDS
TTTGCCTGAGGGCAAAGACC+GGG 0.548229 8.1:+67513472 MS.gene23641:CDS
TTCTTGATGGGAGACAGTGC+CGG 0.548245 8.1:+67513266 MS.gene23641:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.551058 8.1:+67513563 MS.gene23641:CDS
GAAATAGGCTATATTACCTC+CGG 0.551917 8.1:-67513285 None:intergenic
AGGTAATATAGCCTATTTCA+CGG 0.552620 8.1:+67513289 MS.gene23641:CDS
CAGCGGAGGAAGACGGTGGA+GGG 0.554188 8.1:-67512977 None:intergenic
CGAAGGATGGTGGCACGGTG+GGG 0.556375 8.1:-67512863 None:intergenic
TGGTCCCTGTGTTTGCCTGA+GGG 0.566573 8.1:+67513461 MS.gene23641:CDS
GTGGTCCCTGTGTTTGCCTG+AGG 0.571411 8.1:+67513460 MS.gene23641:CDS
TGGCGAATTTGTGGGATCGA+AGG 0.576164 8.1:-67512880 None:intergenic
AGTTTGGCAGCGGAGGAAGA+CGG 0.578445 8.1:-67512984 None:intergenic
GAATTTGTGGGATCGAAGGA+TGG 0.578551 8.1:-67512876 None:intergenic
AAAATCAAACTAAACCCTGA+TGG 0.582070 8.1:+67512816 MS.gene23641:CDS
GGTAATATAGCCTATTTCAC+GGG 0.582524 8.1:+67513290 MS.gene23641:CDS
TTCTTGTTAGTGAACCATCA+GGG 0.584038 8.1:-67512830 None:intergenic
GGGATCGAAGGATGGTGGCA+CGG 0.586269 8.1:-67512868 None:intergenic
GGTGGAAGATAAGGGAGGAA+GGG 0.587951 8.1:-67513052 None:intergenic
GTTCGGGAGGAAGAGACGAA+TGG 0.588388 8.1:-67512955 None:intergenic
CTTTGCCCTCAGGCAAACAC+AGG 0.589918 8.1:-67513466 None:intergenic
TCTTTAGAGAGAGCCGGTTG+CGG 0.590395 8.1:-67512903 None:intergenic
TTAGAGAGAGCCGGTTGCGG+TGG 0.595065 8.1:-67512900 None:intergenic
CTAATGTGGAGCAGGGATGG+TGG 0.596208 8.1:-67513070 None:intergenic
AAAAGATCGGACGGTTGCCA+AGG 0.596761 8.1:+67513540 MS.gene23641:CDS
AAGACGGTGGAGGGTTCGGG+AGG 0.598115 8.1:-67512968 None:intergenic
GATGGGGAGTTTGGCAGCGG+AGG 0.598370 8.1:-67512991 None:intergenic
GGAATGTCTTTAGAGAGAGC+CGG 0.604854 8.1:-67512909 None:intergenic
AGAATCAACTGCATCGTCGT+AGG 0.605454 8.1:-67513162 None:intergenic
AATGATGGGGAGTTTGGCAG+CGG 0.606209 8.1:-67512994 None:intergenic
AAGTGTTACATAGAGGATTG+AGG 0.616571 8.1:-67513764 None:intergenic
TCTCTCCCGTTAAGATTCGA+GGG 0.617230 8.1:+67513336 MS.gene23641:CDS
ATCCCAAGCTCAAAATCCAA+CGG 0.621724 8.1:+67513199 MS.gene23641:CDS
TACCAGCAGGTGATCTCATG+TGG 0.621833 8.1:+67513441 MS.gene23641:CDS
CGGGAGGAAGAGACGAATGG+AGG 0.622270 8.1:-67512952 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.1:+67513565 MS.gene23641:CDS
ATCATTCTCTACTTCCATGG+TGG 0.627271 8.1:+67513011 MS.gene23641:CDS
ATAATCAACAGAGGCAACAA+TGG 0.631313 8.1:-67513108 None:intergenic
TCCCACGAAGTGTTACATAG+AGG 0.639443 8.1:-67513771 None:intergenic
TGGGCAGCTAATGTGGAGCA+GGG 0.644565 8.1:-67513077 None:intergenic
GACCACATGAGATCACCTGC+TGG 0.646204 8.1:-67513443 None:intergenic
TTGTTGGATTGCAATACTCG+TGG 0.649118 8.1:-67513496 None:intergenic
TTTGTGGGATCGAAGGATGG+TGG 0.649200 8.1:-67512873 None:intergenic
AACATTTATCAAAGTCCACA+TGG 0.649642 8.1:-67513244 None:intergenic
TTGGCAGCGGAGGAAGACGG+TGG 0.649761 8.1:-67512981 None:intergenic
TTGATGGGAGACAGTGCCGG+AGG 0.655276 8.1:+67513269 MS.gene23641:CDS
TAATTCCAAACAAAGCACAA+TGG 0.666343 8.1:+67512776 MS.gene23641:CDS
GGGATGGTGGAAGATAAGGG+AGG 0.667136 8.1:-67513057 None:intergenic
AGAGGATGAAACCACCACCA+TGG 0.674528 8.1:-67513025 None:intergenic
TCCATGGATCAGAGACCATG+TGG 0.678870 8.1:+67513229 MS.gene23641:CDS
TAGCCATTAACAAAGCACCT+TGG 0.684803 8.1:-67513557 None:intergenic
TTTGCCCTCAGGCAAACACA+GGG 0.698468 8.1:-67513465 None:intergenic
CGAGAGACGATAATCAACAG+AGG 0.723701 8.1:-67513117 None:intergenic
TATACGGTGAAAAGATCGGA+CGG 0.731375 8.1:+67513531 MS.gene23641:CDS
CATCGTCGTAGGCTGCTGGG+AGG 0.733855 8.1:-67513151 None:intergenic
CATGGAAGTAGAGAATGATG+GGG 0.743084 8.1:-67513007 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATAAATGTTTCTTGAT+GGG + chr8.1:67513254-67513273 MS.gene23641:CDS 20.0%
!!! ATGAAATATCCATTTTTTAG+TGG + chr8.1:67513365-67513384 MS.gene23641:CDS 20.0%
! CTTTGATAAATGTTTCTTGA+TGG + chr8.1:67513253-67513272 MS.gene23641:CDS 25.0%
! TGAAATCTTTGATCATTCTA+AGG + chr8.1:67513685-67513704 MS.gene23641:CDS 25.0%
!!! TTGATTTTGAGGAATTCATA+GGG - chr8.1:67512804-67512823 None:intergenic 25.0%
!!! TTTGATTTTGAGGAATTCAT+AGG - chr8.1:67512805-67512824 None:intergenic 25.0%
AAAATCAAACTAAACCCTGA+TGG + chr8.1:67512816-67512835 MS.gene23641:CDS 30.0%
AACATTTATCAAAGTCCACA+TGG - chr8.1:67513247-67513266 None:intergenic 30.0%
AGGTAATATAGCCTATTTCA+CGG + chr8.1:67513289-67513308 MS.gene23641:CDS 30.0%
TAATTCCAAACAAAGCACAA+TGG + chr8.1:67512776-67512795 MS.gene23641:CDS 30.0%
! TGTTTGGAATTAGGTGAATT+TGG - chr8.1:67512768-67512787 None:intergenic 30.0%
!! ATTGTGCTTTGTTTGGAATT+AGG - chr8.1:67512777-67512796 None:intergenic 30.0%
ACAACTTTGGATCACGTATA+CGG + chr8.1:67513515-67513534 MS.gene23641:CDS 35.0%
ATAATCAACAGAGGCAACAA+TGG - chr8.1:67513111-67513130 None:intergenic 35.0%
CTCTGAACTCCACTAAAAAA+TGG - chr8.1:67513377-67513396 None:intergenic 35.0%
GAAATAGGCTATATTACCTC+CGG - chr8.1:67513288-67513307 None:intergenic 35.0%
GGTAATATAGCCTATTTCAC+GGG + chr8.1:67513290-67513309 MS.gene23641:CDS 35.0%
GTATTGCAATCCAACAACTT+TGG + chr8.1:67513502-67513521 MS.gene23641:CDS 35.0%
TATACGTGATCCAAAGTTGT+TGG - chr8.1:67513515-67513534 None:intergenic 35.0%
TATGATCCCTCGAATCTTAA+CGG - chr8.1:67513345-67513364 None:intergenic 35.0%
TTCTTGTTAGTGAACCATCA+GGG - chr8.1:67512833-67512852 None:intergenic 35.0%
TTTCTTGTTAGTGAACCATC+AGG - chr8.1:67512834-67512853 None:intergenic 35.0%
!!! CAGGGTTTAGTTTGATTTTG+AGG - chr8.1:67512815-67512834 None:intergenic 35.0%
!!! CATTTTTTAGTGGAGTTCAG+AGG + chr8.1:67513375-67513394 MS.gene23641:CDS 35.0%
ACCATGGAAGTAGAGAATGA+TGG - chr8.1:67513012-67513031 None:intergenic 40.0%
ATACCCATCCTCATCAAAAC+AGG - chr8.1:67513657-67513676 None:intergenic 40.0%
ATCATTCTCTACTTCCATGG+TGG + chr8.1:67513011-67513030 MS.gene23641:CDS 40.0%
ATCCCAAGCTCAAAATCCAA+CGG + chr8.1:67513199-67513218 MS.gene23641:CDS 40.0%
ATCGTTAACCAAACGAAGCT+CGG - chr8.1:67513408-67513427 None:intergenic 40.0%
ATGATCCCTCGAATCTTAAC+GGG - chr8.1:67513344-67513363 None:intergenic 40.0%
CACGTATACGGTGAAAAGAT+CGG + chr8.1:67513527-67513546 MS.gene23641:CDS 40.0%
CATGGAAGTAGAGAATGATG+GGG - chr8.1:67513010-67513029 None:intergenic 40.0%
CCATGGAAGTAGAGAATGAT+GGG - chr8.1:67513011-67513030 None:intergenic 40.0%
TATACGGTGAAAAGATCGGA+CGG + chr8.1:67513531-67513550 MS.gene23641:CDS 40.0%
TTGTTGGATTGCAATACTCG+TGG - chr8.1:67513499-67513518 None:intergenic 40.0%
! AAAGGAGCTAGCGAAGATTT+TGG + chr8.1:67513607-67513626 MS.gene23641:CDS 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.1:67513560-67513579 MS.gene23641:CDS 40.0%
! ATGCAGTTGATTCTCTTCTC+TGG + chr8.1:67513171-67513190 MS.gene23641:CDS 40.0%
! ATTCCGTTGGATTTTGAGCT+TGG - chr8.1:67513205-67513224 None:intergenic 40.0%
! TAGCCATTAACAAAGCACCT+TGG - chr8.1:67513560-67513579 None:intergenic 40.0%
! TCCATTGGTGGATAAGCAAA+AGG + chr8.1:67513589-67513608 MS.gene23641:CDS 40.0%
! TCCTTTTGCTTATCCACCAA+TGG - chr8.1:67513593-67513612 None:intergenic 40.0%
! TTCCGTTGGATTTTGAGCTT+GGG - chr8.1:67513204-67513223 None:intergenic 40.0%
! TTGCCAAGGTGCTTTGTTAA+TGG + chr8.1:67513554-67513573 MS.gene23641:CDS 40.0%
!!! AGTCCTGTTTTGATGAGGAT+GGG + chr8.1:67513651-67513670 MS.gene23641:CDS 40.0%
AGAATCAACTGCATCGTCGT+AGG - chr8.1:67513165-67513184 None:intergenic 45.0%
AGGAATTTGGGCAGCTAATG+TGG - chr8.1:67513087-67513106 None:intergenic 45.0%
AGGCAACAATGGCAGGAATT+TGG - chr8.1:67513100-67513119 None:intergenic 45.0%
ATCCAACGGAATCTGATCCA+TGG + chr8.1:67513213-67513232 MS.gene23641:CDS 45.0%
ATCCATGGATCAGATTCCGT+TGG - chr8.1:67513218-67513237 None:intergenic 45.0%
ATGAGATCACCTGCTGGTAA+TGG - chr8.1:67513440-67513459 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.1:67513014-67513033 MS.gene23641:CDS 45.0%
CCCATCATTCTCTACTTCCA+TGG + chr8.1:67513008-67513027 MS.gene23641:CDS 45.0%
CGAGAGACGATAATCAACAG+AGG - chr8.1:67513120-67513139 None:intergenic 45.0%
CGTATATTGCCATTACCAGC+AGG + chr8.1:67513428-67513447 MS.gene23641:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.1:67513565-67513584 MS.gene23641:CDS 45.0%
GAATTTGTGGGATCGAAGGA+TGG - chr8.1:67512879-67512898 None:intergenic 45.0%
GGCAACAATGGCAGGAATTT+GGG - chr8.1:67513099-67513118 None:intergenic 45.0%
TCTCTCCCGTTAAGATTCGA+GGG + chr8.1:67513336-67513355 MS.gene23641:CDS 45.0%
TCTTAACGGGAGAGAGATCA+AGG - chr8.1:67513331-67513350 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.1:67513564-67513583 MS.gene23641:CDS 45.0%
! GGAATGTCTTTAGAGAGAGC+CGG - chr8.1:67512912-67512931 None:intergenic 45.0%
! GGGATCCATTGTGCTTTGTT+TGG - chr8.1:67512784-67512803 None:intergenic 45.0%
! GTAGAGAATGATGGGGAGTT+TGG - chr8.1:67513003-67513022 None:intergenic 45.0%
! GTTTTCGCAGCGGTGTTTAA+GGG - chr8.1:67512933-67512952 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.1:67513563-67513582 MS.gene23641:CDS 45.0%
!!! GAGTCCTGTTTTGATGAGGA+TGG + chr8.1:67513650-67513669 MS.gene23641:CDS 45.0%
!!! TGTGGAGTCCTGTTTTGATG+AGG + chr8.1:67513646-67513665 MS.gene23641:CDS 45.0%
AAAAGATCGGACGGTTGCCA+AGG + chr8.1:67513540-67513559 MS.gene23641:CDS 50.0%
AGAGGATGAAACCACCACCA+TGG - chr8.1:67513028-67513047 None:intergenic 50.0%
AGCACGTAGACCCGTGAAAT+AGG - chr8.1:67513303-67513322 None:intergenic 50.0%
CTCTCTCCCGTTAAGATTCG+AGG + chr8.1:67513335-67513354 MS.gene23641:CDS 50.0%
GACTGAATCCGAGCTTCGTT+TGG + chr8.1:67513397-67513416 MS.gene23641:CDS 50.0%
GATTGCAATACTCGTGGTCC+CGG - chr8.1:67513493-67513512 None:intergenic 50.0%
GGTGGAAGATAAGGGAGGAA+GGG - chr8.1:67513055-67513074 None:intergenic 50.0%
TACCAGCAGGTGATCTCATG+TGG + chr8.1:67513441-67513460 MS.gene23641:CDS 50.0%
TCAACAGAGGCAACAATGGC+AGG - chr8.1:67513107-67513126 None:intergenic 50.0%
TCCACATGGTCTCTGATCCA+TGG - chr8.1:67513233-67513252 None:intergenic 50.0%
TCCATGGATCAGAGACCATG+TGG + chr8.1:67513229-67513248 MS.gene23641:CDS 50.0%
TGGCGAATTTGTGGGATCGA+AGG - chr8.1:67512883-67512902 None:intergenic 50.0%
TGGTGGAAGATAAGGGAGGA+AGG - chr8.1:67513056-67513075 None:intergenic 50.0%
TTCTTGATGGGAGACAGTGC+CGG + chr8.1:67513266-67513285 MS.gene23641:CDS 50.0%
TTTGCCCTCAGGCAAACACA+GGG - chr8.1:67513468-67513487 None:intergenic 50.0%
TTTGTGGGATCGAAGGATGG+TGG - chr8.1:67512876-67512895 None:intergenic 50.0%
! AATGATGGGGAGTTTGGCAG+CGG - chr8.1:67512997-67513016 None:intergenic 50.0%
! ACGAATGGAGGTTTTCGCAG+CGG - chr8.1:67512943-67512962 None:intergenic 50.0%
! GGTTTTCGCAGCGGTGTTTA+AGG - chr8.1:67512934-67512953 None:intergenic 50.0%
! TCTTTAGAGAGAGCCGGTTG+CGG - chr8.1:67512906-67512925 None:intergenic 50.0%
!! AGCAGGGATGGTGGAAGATA+AGG - chr8.1:67513064-67513083 None:intergenic 50.0%
!! GCAGGGATGGTGGAAGATAA+GGG - chr8.1:67513063-67513082 None:intergenic 50.0%
!!! CGAAGATTTTGGCTGCACAC+GGG + chr8.1:67513618-67513637 MS.gene23641:CDS 50.0%
!!! GAAGATTTTGGCTGCACACG+GGG + chr8.1:67513619-67513638 MS.gene23641:CDS 50.0%
!!! GCGAAGATTTTGGCTGCACA+CGG + chr8.1:67513617-67513636 MS.gene23641:CDS 50.0%
AGTTTGGCAGCGGAGGAAGA+CGG - chr8.1:67512987-67513006 None:intergenic 55.0%
CACAAATTCGCCACCGCAAC+CGG + chr8.1:67512890-67512909 MS.gene23641:CDS 55.0%
CAGCTAATGTGGAGCAGGGA+TGG - chr8.1:67513076-67513095 None:intergenic 55.0%
CTAATGTGGAGCAGGGATGG+TGG - chr8.1:67513073-67513092 None:intergenic 55.0%
CTTTGCCCTCAGGCAAACAC+AGG - chr8.1:67513469-67513488 None:intergenic 55.0%
GACCACATGAGATCACCTGC+TGG - chr8.1:67513446-67513465 None:intergenic 55.0%
GGAAGATAAGGGAGGAAGGG+TGG - chr8.1:67513052-67513071 None:intergenic 55.0%
GGTTGCGGTGGCGAATTTGT+GGG - chr8.1:67512891-67512910 None:intergenic 55.0%
GTTCGGGAGGAAGAGACGAA+TGG - chr8.1:67512958-67512977 None:intergenic 55.0%
GTTTGCCTGAGGGCAAAGAC+CGG + chr8.1:67513471-67513490 MS.gene23641:CDS 55.0%
TAAGGGAGGAAGGGTGGTAG+AGG - chr8.1:67513046-67513065 None:intergenic 55.0%
TGGGCAGCTAATGTGGAGCA+GGG - chr8.1:67513080-67513099 None:intergenic 55.0%
TGGTCCCTGTGTTTGCCTGA+GGG + chr8.1:67513461-67513480 MS.gene23641:CDS 55.0%
TTGGGCAGCTAATGTGGAGC+AGG - chr8.1:67513081-67513100 None:intergenic 55.0%
TTTGCCTGAGGGCAAAGACC+GGG + chr8.1:67513472-67513491 MS.gene23641:CDS 55.0%
!! GGGATGGTGGAAGATAAGGG+AGG - chr8.1:67513060-67513079 None:intergenic 55.0%
ACTGCATCGTCGTAGGCTGC+TGG - chr8.1:67513158-67513177 None:intergenic 60.0%
AGGAAGACGGTGGAGGGTTC+GGG - chr8.1:67512974-67512993 None:intergenic 60.0%
CGGGAGGAAGAGACGAATGG+AGG - chr8.1:67512955-67512974 None:intergenic 60.0%
CGGTTGCGGTGGCGAATTTG+TGG - chr8.1:67512892-67512911 None:intergenic 60.0%
CTACGGTGGGGATCCATTGG+TGG + chr8.1:67513577-67513596 MS.gene23641:CDS 60.0%
CTGCATCGTCGTAGGCTGCT+GGG - chr8.1:67513157-67513176 None:intergenic 60.0%
GAGGAAGACGGTGGAGGGTT+CGG - chr8.1:67512975-67512994 None:intergenic 60.0%
GTGGTCCCTGTGTTTGCCTG+AGG + chr8.1:67513460-67513479 MS.gene23641:CDS 60.0%
TGGCTACGGTGGGGATCCAT+TGG + chr8.1:67513574-67513593 MS.gene23641:CDS 60.0%
TTAGAGAGAGCCGGTTGCGG+TGG - chr8.1:67512903-67512922 None:intergenic 60.0%
! ATCGAAGGATGGTGGCACGG+TGG - chr8.1:67512868-67512887 None:intergenic 60.0%
! GGGATCGAAGGATGGTGGCA+CGG - chr8.1:67512871-67512890 None:intergenic 60.0%
! TCGAAGGATGGTGGCACGGT+GGG - chr8.1:67512867-67512886 None:intergenic 60.0%
! TTGATGGGAGACAGTGCCGG+AGG + chr8.1:67513269-67513288 MS.gene23641:CDS 60.0%
AAGACGGTGGAGGGTTCGGG+AGG - chr8.1:67512971-67512990 None:intergenic 65.0%
CAGCGGAGGAAGACGGTGGA+GGG - chr8.1:67512980-67512999 None:intergenic 65.0%
CATCGTCGTAGGCTGCTGGG+AGG - chr8.1:67513154-67513173 None:intergenic 65.0%
GATGGGGAGTTTGGCAGCGG+AGG - chr8.1:67512994-67513013 None:intergenic 65.0%
TGGTCCCGGTCTTTGCCCTC+AGG - chr8.1:67513479-67513498 None:intergenic 65.0%
TTGGCAGCGGAGGAAGACGG+TGG - chr8.1:67512984-67513003 None:intergenic 65.0%
! CGAAGGATGGTGGCACGGTG+GGG - chr8.1:67512866-67512885 None:intergenic 65.0%
GCAGCGGAGGAAGACGGTGG+AGG - chr8.1:67512981-67513000 None:intergenic 70.0%
GCTGCTGGGAGGCGATGCTC+AGG - chr8.1:67513143-67513162 None:intergenic 70.0%
GGCTGCACACGGGGTGCATG+TGG + chr8.1:67513628-67513647 MS.gene23641:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 67512756 67513781 67512756 ID=MS.gene23641
chr8.1 mRNA 67512756 67513781 67512756 ID=MS.gene23641.t1;Parent=MS.gene23641
chr8.1 exon 67512756 67513781 67512756 ID=MS.gene23641.t1.exon1;Parent=MS.gene23641.t1
chr8.1 CDS 67512756 67513781 67512756 ID=cds.MS.gene23641.t1;Parent=MS.gene23641.t1
Gene Sequence

>MS.gene23641

ATGGCAGAACCAAATTCACCTAATTCCAAACAAAGCACAATGGATCCCTATGAATTCCTCAAAATCAAACTAAACCCTGATGGTTCACTAACAAGAAACTACATTGTCCCCACCGTGCCACCATCCTTCGATCCCACAAATTCGCCACCGCAACCGGCTCTCTCTAAAGACATTCCCTTAAACACCGCTGCGAAAACCTCCATTCGTCTCTTCCTCCCGAACCCTCCACCGTCTTCCTCCGCTGCCAAACTCCCCATCATTCTCTACTTCCATGGTGGTGGTTTCATCCTCTACCACCCTTCCTCCCTTATCTTCCACCATCCCTGCTCCACATTAGCTGCCCAAATTCCTGCCATTGTTGCCTCTGTTGATTATCGTCTCTCGCCTGAGCATCGCCTCCCAGCAGCCTACGACGATGCAGTTGATTCTCTTCTCTGGCTCAAATCCCAAGCTCAAAATCCAACGGAATCTGATCCATGGATCAGAGACCATGTGGACTTTGATAAATGTTTCTTGATGGGAGACAGTGCCGGAGGTAATATAGCCTATTTCACGGGTCTACGTGCTCTCGACCTTGATCTCTCTCCCGTTAAGATTCGAGGGATCATAATGAAATATCCATTTTTTAGTGGAGTTCAGAGGACTGAATCCGAGCTTCGTTTGGTTAACGATCGTATATTGCCATTACCAGCAGGTGATCTCATGTGGTCCCTGTGTTTGCCTGAGGGCAAAGACCGGGACCACGAGTATTGCAATCCAACAACTTTGGATCACGTATACGGTGAAAAGATCGGACGGTTGCCAAGGTGCTTTGTTAATGGCTACGGTGGGGATCCATTGGTGGATAAGCAAAAGGAGCTAGCGAAGATTTTGGCTGCACACGGGGTGCATGTGGAGTCCTGTTTTGATGAGGATGGGTATCATGCTGTTGAAATCTTTGATCATTCTAAGGCACAAGTTTTGCTTGATAATGTTAAGAAATTTATACTCTCTGCTGTTTCTGTTGCTCCTCAATCCTCTATGTAA
Protein sequence

>MS.gene23641.t1

MAEPNSPNSKQSTMDPYEFLKIKLNPDGSLTRNYIVPTVPPSFDPTNSPPQPALSKDIPLNTAAKTSIRLFLPNPPPSSSAAKLPIILYFHGGGFILYHPSSLIFHHPCSTLAAQIPAIVASVDYRLSPEHRLPAAYDDAVDSLLWLKSQAQNPTESDPWIRDHVDFDKCFLMGDSAGGNIAYFTGLRALDLDLSPVKIRGIIMKYPFFSGVQRTESELRLVNDRILPLPAGDLMWSLCLPEGKDRDHEYCNPTTLDHVYGEKIGRLPRCFVNGYGGDPLVDKQKELAKILAAHGVHVESCFDEDGYHAVEIFDHSKAQVLLDNVKKFILSAVSVAPQSSM