Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27213.t1 | XP_003629175.3 | 97.2 | 572 | 16 | 0 | 2 | 573 | 71 | 642 | 0.00E+00 | 1138.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27213.t1 | Q9SEY5 | 65.8 | 565 | 181 | 2 | 2 | 554 | 39 | 603 | 1.3e-219 | 763.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27213.t1 | A0A2Z6PPA1 | 82.5 | 600 | 50 | 1 | 11 | 555 | 1 | 600 | 9.6e-288 | 998.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041843 | MS.gene27213 | PPI |
| MS.gene27213 | MS.gene049681 | PPI |
| MS.gene041844 | MS.gene27213 | PPI |
| MS.gene27213 | MS.gene26216 | PPI |
| MS.gene070590 | MS.gene27213 | PPI |
| MS.gene22277 | MS.gene27213 | PPI |
| MS.gene55232 | MS.gene27213 | PPI |
| MS.gene27213 | MS.gene21691 | PPI |
| MS.gene21689 | MS.gene27213 | PPI |
| MS.gene05028 | MS.gene27213 | PPI |
| MS.gene009614 | MS.gene27213 | PPI |
| MS.gene061578 | MS.gene27213 | PPI |
| MS.gene025344 | MS.gene27213 | PPI |
| MS.gene27213 | MS.gene061174 | PPI |
| MS.gene27213 | MS.gene032916 | PPI |
| MS.gene27213 | MS.gene017279 | PPI |
| MS.gene024710 | MS.gene27213 | PPI |
| MS.gene061175 | MS.gene27213 | PPI |
| MS.gene99100 | MS.gene27213 | PPI |
| MS.gene76590 | MS.gene27213 | PPI |
| MS.gene27213 | MS.gene024712 | PPI |
| MS.gene21937 | MS.gene27213 | PPI |
| MS.gene008350 | MS.gene27213 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27213.t1 | MTR_8g074120 | 98.189 | 497 | 9 | 0 | 77 | 573 | 20 | 516 | 0.0 | 1021 |
| MS.gene27213.t1 | MTR_8g074040 | 82.456 | 570 | 98 | 1 | 6 | 573 | 38 | 607 | 0.0 | 995 |
| MS.gene27213.t1 | MTR_8g074040 | 80.164 | 489 | 95 | 1 | 87 | 573 | 1 | 489 | 0.0 | 830 |
| MS.gene27213.t1 | MTR_5g008800 | 62.862 | 552 | 203 | 1 | 11 | 562 | 1 | 550 | 0.0 | 753 |
| MS.gene27213.t1 | MTR_5g008820 | 60.846 | 544 | 209 | 2 | 11 | 554 | 1 | 540 | 0.0 | 735 |
| MS.gene27213.t1 | MTR_2g044180 | 52.198 | 546 | 250 | 4 | 19 | 553 | 15 | 560 | 0.0 | 593 |
| MS.gene27213.t1 | MTR_4g121600 | 49.823 | 564 | 264 | 5 | 6 | 554 | 2 | 561 | 0.0 | 587 |
| MS.gene27213.t1 | MTR_5g076240 | 50.000 | 554 | 263 | 7 | 11 | 554 | 1 | 550 | 0.0 | 572 |
| MS.gene27213.t1 | MTR_3g064420 | 48.649 | 555 | 269 | 5 | 11 | 551 | 1 | 553 | 0.0 | 563 |
| MS.gene27213.t1 | MTR_5g076220 | 50.542 | 554 | 259 | 7 | 11 | 553 | 1 | 550 | 0.0 | 538 |
| MS.gene27213.t1 | MTR_5g076200 | 50.624 | 561 | 256 | 9 | 11 | 557 | 1 | 554 | 0.0 | 536 |
| MS.gene27213.t1 | MTR_0161s0050 | 51.159 | 561 | 255 | 9 | 11 | 557 | 1 | 556 | 0.0 | 530 |
| MS.gene27213.t1 | MTR_5g023730 | 48.270 | 549 | 269 | 9 | 12 | 552 | 3 | 544 | 1.26e-175 | 508 |
| MS.gene27213.t1 | MTR_2g044180 | 51.386 | 469 | 217 | 4 | 96 | 553 | 1 | 469 | 3.54e-174 | 501 |
| MS.gene27213.t1 | MTR_0803s0020 | 30.435 | 552 | 353 | 10 | 15 | 555 | 226 | 757 | 5.83e-64 | 227 |
| MS.gene27213.t1 | MTR_8g039720 | 28.046 | 517 | 314 | 16 | 50 | 541 | 65 | 548 | 4.54e-44 | 165 |
| MS.gene27213.t1 | MTR_1g026310 | 26.627 | 507 | 334 | 13 | 49 | 541 | 67 | 549 | 4.35e-43 | 162 |
| MS.gene27213.t1 | MTR_2g095510 | 26.594 | 549 | 343 | 17 | 24 | 550 | 27 | 537 | 2.02e-41 | 157 |
| MS.gene27213.t1 | MTR_1569s0010 | 32.092 | 349 | 226 | 7 | 200 | 545 | 188 | 528 | 1.56e-40 | 154 |
| MS.gene27213.t1 | MTR_2g105570 | 27.184 | 515 | 340 | 14 | 50 | 550 | 54 | 547 | 7.02e-39 | 150 |
| MS.gene27213.t1 | MTR_3g035130 | 26.894 | 528 | 339 | 14 | 33 | 546 | 15 | 509 | 1.02e-38 | 149 |
| MS.gene27213.t1 | MTR_4g057730 | 25.269 | 558 | 350 | 14 | 20 | 550 | 23 | 540 | 3.07e-37 | 145 |
| MS.gene27213.t1 | MTR_4g077900 | 25.984 | 508 | 315 | 14 | 62 | 545 | 1 | 471 | 1.80e-36 | 142 |
| MS.gene27213.t1 | MTR_3g460770 | 25.000 | 504 | 327 | 16 | 61 | 547 | 67 | 536 | 1.82e-36 | 143 |
| MS.gene27213.t1 | MTR_5g027500 | 28.155 | 515 | 305 | 18 | 62 | 545 | 81 | 561 | 1.29e-35 | 141 |
| MS.gene27213.t1 | MTR_3g088880 | 25.046 | 543 | 353 | 14 | 27 | 553 | 53 | 557 | 1.04e-34 | 138 |
| MS.gene27213.t1 | MTR_3g088870 | 25.275 | 546 | 351 | 15 | 27 | 553 | 52 | 559 | 1.81e-34 | 137 |
| MS.gene27213.t1 | MTR_5g007640 | 27.154 | 534 | 335 | 18 | 39 | 550 | 84 | 585 | 2.11e-34 | 137 |
| MS.gene27213.t1 | MTR_1g073180 | 26.984 | 504 | 321 | 12 | 47 | 541 | 58 | 523 | 1.03e-33 | 135 |
| MS.gene27213.t1 | MTR_4g005750 | 26.316 | 513 | 341 | 13 | 50 | 550 | 53 | 540 | 5.30e-33 | 133 |
| MS.gene27213.t1 | MTR_1g090737 | 26.012 | 519 | 323 | 15 | 51 | 547 | 84 | 563 | 6.94e-33 | 133 |
| MS.gene27213.t1 | MTR_1g063110 | 26.909 | 550 | 330 | 20 | 24 | 541 | 28 | 537 | 9.93e-31 | 126 |
| MS.gene27213.t1 | MTR_1g063120 | 26.884 | 491 | 315 | 16 | 70 | 541 | 76 | 541 | 1.07e-30 | 126 |
| MS.gene27213.t1 | MTR_1g073180 | 26.369 | 493 | 317 | 11 | 47 | 531 | 80 | 534 | 2.72e-30 | 125 |
| MS.gene27213.t1 | MTR_5g027480 | 26.357 | 516 | 301 | 18 | 62 | 545 | 80 | 548 | 2.25e-29 | 122 |
| MS.gene27213.t1 | MTR_3g035130 | 26.514 | 479 | 306 | 13 | 33 | 498 | 15 | 460 | 4.90e-29 | 120 |
| MS.gene27213.t1 | MTR_4g057730 | 24.124 | 485 | 308 | 13 | 20 | 481 | 23 | 470 | 4.33e-27 | 115 |
| MS.gene27213.t1 | MTR_2g030240 | 23.397 | 577 | 341 | 18 | 30 | 547 | 8 | 542 | 5.00e-27 | 115 |
| MS.gene27213.t1 | MTR_4g128337 | 24.510 | 510 | 328 | 15 | 52 | 539 | 61 | 535 | 8.68e-27 | 115 |
| MS.gene27213.t1 | MTR_1586s0010 | 26.111 | 360 | 233 | 10 | 61 | 406 | 81 | 421 | 3.06e-26 | 112 |
| MS.gene27213.t1 | MTR_2g095510 | 25.330 | 454 | 274 | 16 | 24 | 453 | 27 | 439 | 2.31e-25 | 109 |
| MS.gene27213.t1 | MTR_7g109830 | 25.309 | 486 | 291 | 18 | 51 | 480 | 78 | 547 | 1.83e-24 | 108 |
| MS.gene27213.t1 | MTR_4g011790 | 25.879 | 398 | 247 | 12 | 180 | 544 | 209 | 591 | 2.68e-24 | 107 |
| MS.gene27213.t1 | MTR_4g011790 | 25.750 | 400 | 249 | 12 | 180 | 546 | 209 | 593 | 3.68e-24 | 107 |
| MS.gene27213.t1 | MTR_1g034360 | 23.994 | 621 | 355 | 25 | 20 | 565 | 52 | 630 | 4.78e-24 | 107 |
| MS.gene27213.t1 | MTR_1054s0020 | 25.528 | 521 | 318 | 18 | 51 | 551 | 301 | 771 | 3.45e-23 | 104 |
| MS.gene27213.t1 | MTR_2g030240 | 23.923 | 418 | 254 | 12 | 182 | 548 | 45 | 449 | 1.44e-22 | 101 |
| MS.gene27213.t1 | MTR_4g011790 | 25.428 | 409 | 248 | 13 | 180 | 546 | 209 | 602 | 1.47e-22 | 102 |
| MS.gene27213.t1 | MTR_4g057730 | 23.077 | 468 | 300 | 13 | 20 | 464 | 23 | 453 | 8.74e-22 | 99.0 |
| MS.gene27213.t1 | MTR_4g068670 | 22.649 | 521 | 310 | 16 | 25 | 475 | 44 | 541 | 7.64e-21 | 97.1 |
| MS.gene27213.t1 | MTR_1g086600 | 22.393 | 585 | 357 | 18 | 52 | 568 | 101 | 656 | 7.68e-21 | 97.1 |
| MS.gene27213.t1 | MTR_4g013210 | 25.385 | 390 | 243 | 12 | 190 | 546 | 66 | 440 | 3.80e-20 | 94.0 |
| MS.gene27213.t1 | MTR_8g099420 | 24.180 | 488 | 277 | 19 | 49 | 468 | 76 | 538 | 6.08e-20 | 94.4 |
| MS.gene27213.t1 | MTR_7g084850 | 22.842 | 556 | 321 | 21 | 56 | 548 | 210 | 720 | 4.80e-19 | 91.7 |
| MS.gene27213.t1 | MTR_4g013210 | 24.000 | 375 | 226 | 14 | 190 | 546 | 66 | 399 | 2.54e-18 | 87.8 |
| MS.gene27213.t1 | MTR_4g013210 | 24.000 | 375 | 226 | 14 | 190 | 546 | 218 | 551 | 5.46e-18 | 87.8 |
| MS.gene27213.t1 | MTR_5g009350 | 24.361 | 509 | 278 | 23 | 49 | 482 | 75 | 551 | 5.65e-18 | 87.8 |
| MS.gene27213.t1 | MTR_5g009350 | 24.151 | 530 | 290 | 25 | 49 | 499 | 75 | 571 | 7.06e-18 | 87.4 |
| MS.gene27213.t1 | MTR_5g009350 | 24.104 | 502 | 274 | 23 | 49 | 475 | 75 | 544 | 1.60e-17 | 86.7 |
| MS.gene27213.t1 | MTR_5g009350 | 24.303 | 502 | 273 | 23 | 49 | 475 | 75 | 544 | 1.67e-17 | 86.7 |
| MS.gene27213.t1 | MTR_5g009360 | 23.742 | 497 | 282 | 19 | 49 | 475 | 75 | 544 | 1.70e-17 | 86.7 |
| MS.gene27213.t1 | MTR_5g009360 | 26.486 | 370 | 182 | 15 | 171 | 475 | 74 | 418 | 4.52e-17 | 84.7 |
| MS.gene27213.t1 | MTR_4g013210 | 25.278 | 360 | 222 | 11 | 190 | 517 | 218 | 562 | 6.90e-16 | 81.3 |
| MS.gene27213.t1 | MTR_1g026430 | 24.759 | 311 | 210 | 8 | 49 | 347 | 67 | 365 | 7.15e-15 | 77.4 |
| MS.gene27213.t1 | MTR_1g026470 | 24.437 | 311 | 211 | 7 | 49 | 347 | 67 | 365 | 4.10e-14 | 75.1 |
| MS.gene27213.t1 | MTR_8g083170 | 29.508 | 183 | 103 | 7 | 313 | 483 | 457 | 625 | 6.31e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27213.t1 | AT2G17650 | 67.434 | 565 | 172 | 3 | 2 | 554 | 39 | 603 | 0.0 | 791 |
| MS.gene27213.t1 | AT1G20560 | 62.340 | 547 | 204 | 1 | 11 | 555 | 3 | 549 | 0.0 | 731 |
| MS.gene27213.t1 | AT1G20560 | 62.208 | 471 | 176 | 1 | 87 | 555 | 1 | 471 | 0.0 | 630 |
| MS.gene27213.t1 | AT5G16340 | 52.182 | 550 | 250 | 6 | 11 | 552 | 1 | 545 | 0.0 | 578 |
| MS.gene27213.t1 | AT5G16370 | 52.632 | 551 | 248 | 6 | 11 | 553 | 1 | 546 | 0.0 | 575 |
| MS.gene27213.t1 | AT3G16910 | 48.837 | 559 | 274 | 4 | 8 | 554 | 6 | 564 | 0.0 | 568 |
| MS.gene27213.t1 | AT1G66120 | 48.545 | 550 | 272 | 5 | 11 | 551 | 1 | 548 | 0.0 | 555 |
| MS.gene27213.t1 | AT1G76290 | 50.457 | 547 | 261 | 4 | 11 | 554 | 1 | 540 | 0.0 | 550 |
| MS.gene27213.t1 | AT1G75960 | 49.727 | 549 | 263 | 6 | 11 | 551 | 1 | 544 | 0.0 | 537 |
| MS.gene27213.t1 | AT1G21530 | 48.007 | 552 | 272 | 7 | 11 | 551 | 1 | 548 | 0.0 | 531 |
| MS.gene27213.t1 | AT1G21540 | 48.649 | 555 | 265 | 9 | 11 | 551 | 1 | 549 | 0.0 | 529 |
| MS.gene27213.t1 | AT1G65880 | 46.416 | 558 | 280 | 5 | 11 | 551 | 1 | 556 | 0.0 | 528 |
| MS.gene27213.t1 | AT1G21530 | 47.826 | 552 | 271 | 7 | 11 | 551 | 1 | 546 | 0.0 | 527 |
| MS.gene27213.t1 | AT1G65890 | 46.607 | 560 | 275 | 6 | 11 | 551 | 1 | 555 | 0.0 | 526 |
| MS.gene27213.t1 | AT1G77240 | 47.636 | 550 | 273 | 9 | 11 | 551 | 1 | 544 | 0.0 | 521 |
| MS.gene27213.t1 | AT1G68270 | 43.345 | 556 | 269 | 8 | 11 | 551 | 1 | 525 | 3.19e-157 | 461 |
| MS.gene27213.t1 | AT1G20500 | 28.247 | 485 | 303 | 14 | 68 | 538 | 83 | 536 | 1.57e-41 | 158 |
| MS.gene27213.t1 | AT1G20510 | 27.748 | 555 | 339 | 20 | 17 | 541 | 11 | 533 | 9.81e-39 | 150 |
| MS.gene27213.t1 | AT5G63380 | 27.898 | 509 | 309 | 15 | 51 | 541 | 79 | 547 | 1.75e-38 | 149 |
| MS.gene27213.t1 | AT3G48990 | 26.365 | 531 | 347 | 12 | 29 | 546 | 9 | 508 | 5.23e-37 | 144 |
| MS.gene27213.t1 | AT3G21240 | 26.692 | 532 | 351 | 13 | 28 | 547 | 45 | 549 | 1.19e-36 | 144 |
| MS.gene27213.t1 | AT4G05160 | 26.112 | 517 | 333 | 14 | 52 | 550 | 57 | 542 | 1.29e-36 | 144 |
| MS.gene27213.t1 | AT1G20480 | 25.657 | 495 | 328 | 11 | 61 | 541 | 86 | 554 | 2.17e-35 | 140 |
| MS.gene27213.t1 | AT1G62940 | 25.540 | 509 | 339 | 15 | 51 | 547 | 55 | 535 | 2.66e-35 | 140 |
| MS.gene27213.t1 | AT4G19010 | 24.752 | 505 | 318 | 16 | 69 | 551 | 93 | 557 | 8.97e-33 | 132 |
| MS.gene27213.t1 | AT1G65060 | 24.539 | 542 | 367 | 14 | 20 | 547 | 46 | 559 | 8.32e-32 | 130 |
| MS.gene27213.t1 | AT3G21230 | 26.376 | 527 | 336 | 16 | 48 | 553 | 74 | 569 | 2.25e-31 | 129 |
| MS.gene27213.t1 | AT5G38120 | 26.829 | 492 | 304 | 16 | 66 | 538 | 82 | 536 | 4.94e-31 | 127 |
| MS.gene27213.t1 | AT3G21240 | 27.039 | 466 | 302 | 12 | 28 | 482 | 45 | 483 | 1.19e-30 | 125 |
| MS.gene27213.t1 | AT3G21240 | 27.039 | 466 | 302 | 12 | 28 | 482 | 45 | 483 | 1.19e-30 | 125 |
| MS.gene27213.t1 | AT1G20510 | 27.530 | 494 | 297 | 19 | 17 | 481 | 11 | 472 | 2.03e-30 | 124 |
| MS.gene27213.t1 | AT1G30520 | 24.615 | 585 | 325 | 17 | 30 | 547 | 13 | 548 | 6.76e-30 | 124 |
| MS.gene27213.t1 | AT1G30520 | 24.615 | 585 | 325 | 17 | 30 | 547 | 13 | 548 | 6.76e-30 | 124 |
| MS.gene27213.t1 | AT2G47240 | 26.102 | 590 | 329 | 24 | 51 | 568 | 19 | 573 | 3.35e-29 | 122 |
| MS.gene27213.t1 | AT2G47240 | 26.146 | 589 | 328 | 24 | 52 | 568 | 79 | 632 | 7.97e-29 | 121 |
| MS.gene27213.t1 | AT2G47240 | 26.146 | 589 | 328 | 24 | 52 | 568 | 79 | 632 | 7.97e-29 | 121 |
| MS.gene27213.t1 | AT2G47240 | 26.146 | 589 | 328 | 24 | 52 | 568 | 79 | 632 | 7.97e-29 | 121 |
| MS.gene27213.t1 | AT1G51680 | 24.806 | 516 | 345 | 14 | 50 | 547 | 66 | 556 | 4.01e-28 | 119 |
| MS.gene27213.t1 | AT5G38120 | 26.667 | 465 | 286 | 15 | 66 | 512 | 82 | 509 | 8.03e-28 | 117 |
| MS.gene27213.t1 | AT3G21230 | 26.494 | 502 | 314 | 17 | 48 | 525 | 74 | 544 | 8.32e-27 | 115 |
| MS.gene27213.t1 | AT1G51680 | 25.586 | 469 | 306 | 14 | 50 | 500 | 66 | 509 | 2.60e-25 | 110 |
| MS.gene27213.t1 | AT1G64400 | 24.040 | 495 | 288 | 16 | 49 | 478 | 76 | 547 | 9.11e-25 | 109 |
| MS.gene27213.t1 | AT1G20510 | 27.061 | 473 | 284 | 19 | 17 | 460 | 11 | 451 | 1.85e-24 | 107 |
| MS.gene27213.t1 | AT3G21230 | 26.608 | 451 | 288 | 13 | 48 | 482 | 74 | 497 | 1.08e-23 | 105 |
| MS.gene27213.t1 | AT5G38120 | 26.267 | 434 | 265 | 15 | 66 | 481 | 82 | 478 | 6.59e-23 | 102 |
| MS.gene27213.t1 | AT5G38120 | 26.267 | 434 | 265 | 15 | 66 | 481 | 82 | 478 | 6.59e-23 | 102 |
| MS.gene27213.t1 | AT1G51680 | 25.333 | 450 | 294 | 13 | 50 | 482 | 66 | 490 | 1.29e-22 | 101 |
| MS.gene27213.t1 | AT1G30520 | 24.600 | 500 | 273 | 16 | 30 | 477 | 13 | 460 | 1.91e-20 | 95.1 |
| MS.gene27213.t1 | AT1G30520 | 24.600 | 500 | 273 | 16 | 30 | 477 | 13 | 460 | 1.91e-20 | 95.1 |
| MS.gene27213.t1 | AT1G49430 | 22.267 | 494 | 302 | 15 | 50 | 480 | 77 | 551 | 2.60e-20 | 95.5 |
| MS.gene27213.t1 | AT1G65060 | 24.385 | 447 | 297 | 13 | 20 | 453 | 46 | 464 | 4.81e-20 | 94.0 |
| MS.gene27213.t1 | AT4G11030 | 24.187 | 492 | 291 | 15 | 49 | 478 | 76 | 547 | 1.40e-19 | 93.2 |
| MS.gene27213.t1 | AT4G23850 | 24.798 | 496 | 278 | 19 | 49 | 475 | 76 | 545 | 2.40e-19 | 92.4 |
| MS.gene27213.t1 | AT1G20490 | 26.613 | 372 | 237 | 13 | 68 | 429 | 83 | 428 | 7.32e-18 | 87.0 |
| MS.gene27213.t1 | AT1G20490 | 26.613 | 372 | 237 | 13 | 68 | 429 | 83 | 428 | 7.32e-18 | 87.0 |
| MS.gene27213.t1 | AT5G36880 | 22.563 | 554 | 348 | 20 | 44 | 548 | 194 | 715 | 2.07e-16 | 83.2 |
| MS.gene27213.t1 | AT5G36880 | 22.563 | 554 | 348 | 20 | 44 | 548 | 144 | 665 | 2.37e-16 | 83.2 |
| MS.gene27213.t1 | AT5G36880 | 22.563 | 554 | 348 | 20 | 44 | 548 | 144 | 665 | 2.37e-16 | 83.2 |
| MS.gene27213.t1 | AT5G36880 | 22.563 | 554 | 348 | 20 | 44 | 548 | 144 | 665 | 2.37e-16 | 83.2 |
| MS.gene27213.t1 | AT5G36880 | 22.563 | 554 | 348 | 20 | 44 | 548 | 144 | 665 | 2.37e-16 | 83.2 |
Find 130 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCTTTCCTGTTTATCTT+TGG | 0.196891 | 8.3:-28895756 | MS.gene27213:CDS |
| GACAGAACATCACTTGTTTA+TGG | 0.202985 | 8.3:-28897352 | MS.gene27213:CDS |
| AAGGCCTTGGGAAGCATTTC+TGG | 0.208212 | 8.3:-28894806 | MS.gene27213:CDS |
| TTCACGCCTTGATGCAAATA+TGG | 0.236806 | 8.3:-28896136 | MS.gene27213:CDS |
| TTTGTCACCTATCAACTTCT+TGG | 0.240894 | 8.3:-28897398 | MS.gene27213:CDS |
| ATGGTTCTTTGAAGTATAAT+TGG | 0.253303 | 8.3:-28897333 | MS.gene27213:CDS |
| GCTTCTTCTCTCTCCCAGTT+AGG | 0.257691 | 8.3:-28897280 | MS.gene27213:CDS |
| CTTTCGATGATGGAAGAAAA+TGG | 0.270591 | 8.3:-28895481 | MS.gene27213:CDS |
| GACTTTCCTTAGACAAATAT+TGG | 0.272166 | 8.3:+28895669 | None:intergenic |
| ATATTGTCAAATATGTTCTT+TGG | 0.291239 | 8.3:+28895643 | None:intergenic |
| TTGGAACCAATATTTGTCTA+AGG | 0.292344 | 8.3:-28895675 | MS.gene27213:CDS |
| TCAATGATCATGACTAAAAT+AGG | 0.293022 | 8.3:+28896003 | None:intergenic |
| TCAAATATGCACAAGGAGTT+TGG | 0.293728 | 8.3:+28894984 | None:intergenic |
| GTTCCATTGTTTCATGCTAA+TGG | 0.313041 | 8.3:-28895730 | MS.gene27213:CDS |
| TGGTTCTTTGAAGTATAATT+GGG | 0.328576 | 8.3:-28897332 | MS.gene27213:CDS |
| TTGCTAGACCTGATGATCTA+TGG | 0.342123 | 8.3:-28895009 | MS.gene27213:CDS |
| GAGGTGTAATTTATACTTAT+AGG | 0.342668 | 8.3:+28895868 | None:intergenic |
| AGATCGTTTGCCGCATTTCA+TGG | 0.346055 | 8.3:-28894909 | MS.gene27213:CDS |
| TTTAATATTACTCATATGTA+TGG | 0.350433 | 8.3:-28895457 | MS.gene27213:CDS |
| TAATGGTTGGTGCTTAGCTT+GGG | 0.361141 | 8.3:-28895713 | MS.gene27213:CDS |
| CTTCTTCTCTCTCCCAGTTA+GGG | 0.367339 | 8.3:-28897279 | MS.gene27213:CDS |
| CTCCACGAGAAATCCCTAAC+TGG | 0.368028 | 8.3:+28897266 | None:intergenic |
| TCATACATTGCAGGGACATT+AGG | 0.376737 | 8.3:+28896207 | None:intergenic |
| AGGGATTTCTCGTGGAGATA+TGG | 0.387671 | 8.3:-28897260 | MS.gene27213:intron |
| GGAACATTCCAAAGATAAAC+AGG | 0.397537 | 8.3:+28895748 | None:intergenic |
| GTTGGTGAGGTAATGTTTAG+AGG | 0.397931 | 8.3:-28895256 | MS.gene27213:CDS |
| TTCAACAATGGATAGTGTTC+CGG | 0.403704 | 8.3:-28895293 | MS.gene27213:CDS |
| TGGGGAGTGGCAGCACAGTT+TGG | 0.407012 | 8.3:-28895694 | MS.gene27213:CDS |
| TTGCTTGTGAATGCTCCAAT+AGG | 0.413914 | 8.3:+28896106 | None:intergenic |
| GAGGGAGAAAGCCAAGGCCT+TGG | 0.414480 | 8.3:-28894819 | MS.gene27213:CDS |
| TAGCCATCCAGCGGTCTTAG+AGG | 0.414549 | 8.3:-28895041 | MS.gene27213:CDS |
| AGGACGCTGTTCCAGGATCA+TGG | 0.416440 | 8.3:-28897465 | MS.gene27213:CDS |
| TCCATTGATTCCCATGATCC+TGG | 0.425895 | 8.3:+28897454 | None:intergenic |
| TCCAAAGATAAACAGGAAAG+AGG | 0.427884 | 8.3:+28895755 | None:intergenic |
| TGCTAGACCTGATGATCTAT+GGG | 0.429616 | 8.3:-28895008 | MS.gene27213:CDS |
| AAATATGGTTTCAGTCCTAT+TGG | 0.431796 | 8.3:-28896121 | MS.gene27213:CDS |
| AGAAATGCTTCCCAAGGCCT+TGG | 0.433824 | 8.3:+28894808 | None:intergenic |
| CATATTTGAAATTGAAAGAC+GGG | 0.434432 | 8.3:-28894970 | MS.gene27213:CDS |
| CTAATGGTTGGTGCTTAGCT+TGG | 0.438996 | 8.3:-28895714 | MS.gene27213:CDS |
| TGACTGAAGACAACTCCTTT+AGG | 0.442881 | 8.3:+28895829 | None:intergenic |
| ACACCTCTGGCACTACATCT+AGG | 0.454516 | 8.3:-28895852 | MS.gene27213:CDS |
| AGGGAGAAAGCCAAGGCCTT+GGG | 0.454712 | 8.3:-28894818 | MS.gene27213:CDS |
| GCTCTCTCCAAGAAGTTGAT+AGG | 0.457474 | 8.3:+28897391 | None:intergenic |
| TTGAAGGACATAATAGTATC+CGG | 0.458140 | 8.3:-28895106 | MS.gene27213:CDS |
| GTTTGGCCCCATAGATCATC+AGG | 0.467905 | 8.3:+28895001 | None:intergenic |
| ATGGATAGTGTTCCGGCTGA+TGG | 0.471080 | 8.3:-28895286 | MS.gene27213:CDS |
| CACAAGGTATCAGTGATAAC+CGG | 0.474826 | 8.3:-28895529 | MS.gene27213:CDS |
| AAATGCAGCTCATACATTGC+AGG | 0.475944 | 8.3:+28896198 | None:intergenic |
| AAGAAGCATTTAAAGATGGT+TGG | 0.479593 | 8.3:-28895189 | MS.gene27213:CDS |
| GATATGCCGAAAACTTCAAC+AGG | 0.480240 | 8.3:-28894863 | MS.gene27213:CDS |
| GCCACAGATCCTTTCGATGA+TGG | 0.483462 | 8.3:-28895491 | MS.gene27213:CDS |
| CGAAGTTGCTCGAGGAGCAT+TGG | 0.487528 | 8.3:-28896055 | MS.gene27213:CDS |
| GTGATTGAGCAGCTTTCTAT+CGG | 0.490999 | 8.3:+28895549 | None:intergenic |
| ACAGAAGAAGCATTTAAAGA+TGG | 0.493385 | 8.3:-28895193 | MS.gene27213:CDS |
| CTCACAGAAACATGTGGTGC+AGG | 0.497007 | 8.3:-28895433 | MS.gene27213:CDS |
| GAAAGGATCTGTGGCGGTGG+AGG | 0.498372 | 8.3:+28895499 | None:intergenic |
| TCCAGGATCATGGGAATCAA+TGG | 0.503093 | 8.3:-28897455 | MS.gene27213:CDS |
| CTTCTTGGAGAGAGCAGCAA+AGG | 0.504058 | 8.3:-28897383 | MS.gene27213:CDS |
| CAGAGAATGGCTCCAGCCAT+TGG | 0.516988 | 8.3:+28896168 | None:intergenic |
| CATTTCGCAGTACCAATGGC+TGG | 0.521714 | 8.3:-28896180 | MS.gene27213:CDS |
| TCCAGCGGTCTTAGAGGCTG+CGG | 0.522604 | 8.3:-28895035 | MS.gene27213:CDS |
| GGCACTACATCTAGGCCTAA+AGG | 0.526937 | 8.3:-28895844 | MS.gene27213:CDS |
| ATAAGTATAAATTACACCTC+TGG | 0.527089 | 8.3:-28895865 | MS.gene27213:CDS |
| CATTGTTTCATGCTAATGGT+TGG | 0.530364 | 8.3:-28895726 | MS.gene27213:CDS |
| ATACTATTATGTCCTTCAAC+CGG | 0.531022 | 8.3:+28895110 | None:intergenic |
| ATCGAAAGGATCTGTGGCGG+TGG | 0.540215 | 8.3:+28895496 | None:intergenic |
| AAAGATGGTTGGTTTCATAG+TGG | 0.540389 | 8.3:-28895178 | MS.gene27213:CDS |
| TGAAGGACATAATAGTATCC+GGG | 0.542556 | 8.3:-28895105 | MS.gene27213:CDS |
| TGAATTAAGAGTACAGAGAA+TGG | 0.548168 | 8.3:+28896155 | None:intergenic |
| TTGTGCTTGGAGACCTGAGT+GGG | 0.556554 | 8.3:-28895404 | MS.gene27213:CDS |
| CTGAAACCATATTTGCATCA+AGG | 0.559164 | 8.3:+28896130 | None:intergenic |
| ACCGCAGCCTCTAAGACCGC+TGG | 0.562499 | 8.3:+28895034 | None:intergenic |
| CGAAATCAAAGACCGGTTGA+AGG | 0.562728 | 8.3:-28895122 | MS.gene27213:CDS |
| TGTCAAAGATCCTTCAACAA+TGG | 0.563228 | 8.3:-28895305 | MS.gene27213:CDS |
| GGACGCTGTTCCAGGATCAT+GGG | 0.566750 | 8.3:-28897464 | MS.gene27213:CDS |
| TTGGTGCTTAGCTTGGGGAG+TGG | 0.567534 | 8.3:-28895707 | MS.gene27213:CDS |
| GGCAAGGTGTACCACATGTA+GGG | 0.573061 | 8.3:-28895342 | MS.gene27213:CDS |
| TTGGTGAGGTAATGTTTAGA+GGG | 0.575529 | 8.3:-28895255 | MS.gene27213:CDS |
| GCATATTTGAAATTGAAAGA+CGG | 0.576277 | 8.3:-28894971 | MS.gene27213:CDS |
| AGGCAAGGTGTACCACATGT+AGG | 0.576963 | 8.3:-28895343 | MS.gene27213:CDS |
| TTCAATTTCAAATATGCACA+AGG | 0.580423 | 8.3:+28894977 | None:intergenic |
| TGTACCACATGTAGGGTTGG+AGG | 0.582743 | 8.3:-28895335 | MS.gene27213:CDS |
| TGGCGGTGGAGGAGAACCTC+CGG | 0.583239 | 8.3:+28895510 | None:intergenic |
| TAAGCATAAAGTAACATACA+TGG | 0.584854 | 8.3:-28895617 | MS.gene27213:CDS |
| AGTAGTTGATAGTCTACGAA+TGG | 0.587022 | 8.3:+28896078 | None:intergenic |
| CCAAAGATAAACAGGAAAGA+GGG | 0.591892 | 8.3:+28895756 | None:intergenic |
| GGATCATGGGAATCAATGGA+AGG | 0.598769 | 8.3:-28897451 | MS.gene27213:CDS |
| GCTGCATTTCGCAGTACCAA+TGG | 0.599815 | 8.3:-28896184 | MS.gene27213:CDS |
| TCCCAGTTAGGGATTTCTCG+TGG | 0.600719 | 8.3:-28897268 | MS.gene27213:CDS |
| GGTTCTTTGAAGTATAATTG+GGG | 0.604503 | 8.3:-28897331 | MS.gene27213:CDS |
| AATGCAGCTCATACATTGCA+GGG | 0.604689 | 8.3:+28896199 | None:intergenic |
| ACAAAGGAACGGAATTTGCA+TGG | 0.607245 | 8.3:+28897416 | None:intergenic |
| GGAGGTAACATGTCCCACTC+AGG | 0.607903 | 8.3:+28895391 | None:intergenic |
| TCACAGAAACATGTGGTGCA+GGG | 0.609788 | 8.3:-28895432 | MS.gene27213:CDS |
| CAGCCTCTAAGACCGCTGGA+TGG | 0.610850 | 8.3:+28895038 | None:intergenic |
| AAGCATAAAGTAACATACAT+GGG | 0.612839 | 8.3:-28895616 | MS.gene27213:CDS |
| AGGGACATTAGGTGCTAGTG+TGG | 0.615984 | 8.3:+28896218 | None:intergenic |
| AGGTGTACCACATGTAGGGT+TGG | 0.618177 | 8.3:-28895338 | MS.gene27213:CDS |
| GCAATCATATTCAAAACAGT+AGG | 0.618380 | 8.3:+28895586 | None:intergenic |
| CTTGCTGTGAAACATTCTGA+TGG | 0.618855 | 8.3:-28895151 | MS.gene27213:CDS |
| TCCACGAGAAATCCCTAACT+GGG | 0.623064 | 8.3:+28897267 | None:intergenic |
| GAAGGACATAATAGTATCCG+GGG | 0.624035 | 8.3:-28895104 | MS.gene27213:CDS |
| AATGGTTGGTGCTTAGCTTG+GGG | 0.624167 | 8.3:-28895712 | MS.gene27213:CDS |
| AGAGGGAATACAATGATGAG+TGG | 0.624606 | 8.3:-28895238 | MS.gene27213:CDS |
| GGAACACTATCCATTGTTGA+AGG | 0.629347 | 8.3:+28895295 | None:intergenic |
| TTTGTGCTTGGAGACCTGAG+TGG | 0.630741 | 8.3:-28895405 | MS.gene27213:CDS |
| TCCATCATCGAAAGGATCTG+TGG | 0.631677 | 8.3:+28895490 | None:intergenic |
| CAACCATTAGCATGAAACAA+TGG | 0.631816 | 8.3:+28895727 | None:intergenic |
| GGGTCCAGAAATGCTTCCCA+AGG | 0.631850 | 8.3:+28894802 | None:intergenic |
| GTTGATAGGTGACAAAGGAA+CGG | 0.634958 | 8.3:+28897405 | None:intergenic |
| TATGATTGCGAATTCTACAC+TGG | 0.637645 | 8.3:-28895572 | MS.gene27213:CDS |
| GTTACATCGAAATCAAAGAC+CGG | 0.638764 | 8.3:-28895129 | MS.gene27213:CDS |
| AGGCCTAGATGTAGTGCCAG+AGG | 0.640784 | 8.3:+28895849 | None:intergenic |
| AAGAAGTTGATAGGTGACAA+AGG | 0.641447 | 8.3:+28897400 | None:intergenic |
| GATCATGGGAATCAATGGAA+GGG | 0.644377 | 8.3:-28897450 | MS.gene27213:CDS |
| TAGAAAGCTGCTCAATCACA+AGG | 0.645739 | 8.3:-28895545 | MS.gene27213:CDS |
| TCAAAGATAAAAGCTAGGCA+AGG | 0.649836 | 8.3:-28895358 | MS.gene27213:CDS |
| CAACTACTCGAAGTTGCTCG+AGG | 0.650856 | 8.3:-28896063 | MS.gene27213:CDS |
| TTATCTAAACTCTCTCGCAA+CGG | 0.654030 | 8.3:-28895797 | MS.gene27213:CDS |
| AGAAAACATCAGCTCAATCG+AGG | 0.662335 | 8.3:-28895080 | MS.gene27213:CDS |
| CTGCACCACATGTTTCTGTG+AGG | 0.679321 | 8.3:+28895434 | None:intergenic |
| ATCATCGAAAGGATCTGTGG+CGG | 0.687585 | 8.3:+28895493 | None:intergenic |
| CATAAAGTAACATACATGGG+AGG | 0.691585 | 8.3:-28895613 | MS.gene27213:CDS |
| AGTTCCTCCAACCCTACATG+TGG | 0.698807 | 8.3:+28895331 | None:intergenic |
| AAGGTATCAGTGATAACCGG+AGG | 0.715611 | 8.3:-28895526 | MS.gene27213:CDS |
| GCTAGACCTGATGATCTATG+GGG | 0.730274 | 8.3:-28895007 | MS.gene27213:CDS |
| ATAGGATCTAATTCACTGCG+TGG | 0.732378 | 8.3:+28895886 | None:intergenic |
| GGAGTTGTCTTCAGTCACAG+AGG | 0.737629 | 8.3:-28895823 | MS.gene27213:CDS |
| AAGGACATAATAGTATCCGG+GGG | 0.748378 | 8.3:-28895103 | MS.gene27213:CDS |
| TATGGCCTCACAGAAACATG+TGG | 0.762816 | 8.3:-28895439 | MS.gene27213:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAAAATTGAGAT+GGG | + | chr8.3:28894860-28894879 | None:intergenic | 10.0% |
| !! | CACAATAAAAAAAATTAATA+TGG | + | chr8.3:28895409-28895428 | None:intergenic | 10.0% |
| !! | TAAATAAATAAAAATTGAGA+TGG | + | chr8.3:28894861-28894880 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATAAAAGAAAG+TGG | - | chr8.3:28894878-28894897 | MS.gene27213:CDS | 10.0% |
| !! | AAAATGTAACATAAATATGA+AGG | + | chr8.3:28895331-28895350 | None:intergenic | 15.0% |
| !! | TTTAATATTACTCATATGTA+TGG | - | chr8.3:28897035-28897054 | MS.gene27213:intron | 15.0% |
| !!! | AAAACAAATTTTGTTAAAAC+TGG | - | chr8.3:28894932-28894951 | MS.gene27213:CDS | 15.0% |
| !!! | ACTTTATCTTTAATTTATGT+GGG | - | chr8.3:28895491-28895510 | MS.gene27213:CDS | 15.0% |
| !!! | TACTTTATCTTTAATTTATG+TGG | - | chr8.3:28895490-28895509 | MS.gene27213:CDS | 15.0% |
| !!! | TTTATCTTTGATTTTTCATT+AGG | + | chr8.3:28897125-28897144 | None:intergenic | 15.0% |
| !! | AAAAATCAAAGATAAAAGCT+AGG | - | chr8.3:28897129-28897148 | MS.gene27213:intron | 20.0% |
| !! | AATGAATAGAGAATAAGTTT+AGG | + | chr8.3:28894987-28895006 | None:intergenic | 20.0% |
| !! | AATGATAACTTGATCAATTA+TGG | + | chr8.3:28896017-28896036 | None:intergenic | 20.0% |
| !! | ATAGTACAAAAGAAAAATAG+TGG | + | chr8.3:28896131-28896150 | None:intergenic | 20.0% |
| !! | ATATTGTCAAATATGTTCTT+TGG | + | chr8.3:28896852-28896871 | None:intergenic | 20.0% |
| !! | ATGAATAGAGAATAAGTTTA+GGG | + | chr8.3:28894986-28895005 | None:intergenic | 20.0% |
| !! | ATTGATCAAGTTATCATTTA+AGG | - | chr8.3:28896019-28896038 | MS.gene27213:CDS | 20.0% |
| !! | GTTAAAATCATATCTATACA+TGG | - | chr8.3:28895557-28895576 | MS.gene27213:CDS | 20.0% |
| !! | TATGAAAAACTTATAGCTAT+TGG | - | chr8.3:28896558-28896577 | MS.gene27213:intron | 20.0% |
| !!! | AACAATTATGCACATATTTT+TGG | + | chr8.3:28895834-28895853 | None:intergenic | 20.0% |
| !!! | AATAATGAAAAGATTTTCAC+TGG | - | chr8.3:28895794-28895813 | MS.gene27213:CDS | 20.0% |
| !!! | ATAATGATTTTGATATTGTG+AGG | - | chr8.3:28896583-28896602 | MS.gene27213:intron | 20.0% |
| !!! | ATTTTTCTTTTACAATCTAG+GGG | + | chr8.3:28897713-28897732 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTTTACAATCTA+GGG | + | chr8.3:28897714-28897733 | None:intergenic | 20.0% |
| !!! | GTAAAAATTATTTTGACAAG+AGG | - | chr8.3:28894754-28894773 | MS.gene27213:CDS | 20.0% |
| !!! | TAAAACTTGTTACTTTTTTC+AGG | - | chr8.3:28895007-28895026 | MS.gene27213:CDS | 20.0% |
| ! | AAGCATAAAGTAACATACAT+GGG | - | chr8.3:28896876-28896895 | MS.gene27213:intron | 25.0% |
| ! | AGAGAGATAAAATGATAGTT+AGG | - | chr8.3:28895750-28895769 | MS.gene27213:CDS | 25.0% |
| ! | ATAAGAATCATTCCAACTTT+AGG | + | chr8.3:28895594-28895613 | None:intergenic | 25.0% |
| ! | ATAAGTATAAATTACACCTC+TGG | - | chr8.3:28896627-28896646 | MS.gene27213:intron | 25.0% |
| ! | ATGAGTCTCTATTTATACAT+AGG | + | chr8.3:28895990-28896009 | None:intergenic | 25.0% |
| ! | CCTAGATTGTAAAAGAAAAA+TGG | - | chr8.3:28897712-28897731 | MS.gene27213:intron | 25.0% |
| ! | GAGAGATAAAATGATAGTTA+GGG | - | chr8.3:28895751-28895770 | MS.gene27213:CDS | 25.0% |
| ! | GAGGTGTAATTTATACTTAT+AGG | + | chr8.3:28896627-28896646 | None:intergenic | 25.0% |
| ! | TAAGCATAAAGTAACATACA+TGG | - | chr8.3:28896875-28896894 | MS.gene27213:intron | 25.0% |
| ! | TCAATGATCATGACTAAAAT+AGG | + | chr8.3:28896492-28896511 | None:intergenic | 25.0% |
| ! | TGAAAATGAAGAAGATAACA+AGG | + | chr8.3:28895959-28895978 | None:intergenic | 25.0% |
| ! | TTAAGGTCATTTGTCTAATT+AGG | - | chr8.3:28896036-28896055 | MS.gene27213:CDS | 25.0% |
| ! | TTCAATTTCAAATATGCACA+AGG | + | chr8.3:28897518-28897537 | None:intergenic | 25.0% |
| !! | ATTTCATGTTGATTGTAAAC+AGG | - | chr8.3:28896248-28896267 | MS.gene27213:intron | 25.0% |
| !! | CATATTTGAAATTGAAAGAC+GGG | - | chr8.3:28897522-28897541 | MS.gene27213:intron | 25.0% |
| !! | GCATATTTGAAATTGAAAGA+CGG | - | chr8.3:28897521-28897540 | MS.gene27213:intron | 25.0% |
| !! | TCTTGAAAAATGACTGTTTT+AGG | + | chr8.3:28897611-28897630 | None:intergenic | 25.0% |
| !!! | AGATACAAAAGTTTGTTTTG+AGG | - | chr8.3:28897654-28897673 | MS.gene27213:intron | 25.0% |
| !!! | ATCTTTGATTTTTCATTAGG+AGG | + | chr8.3:28897122-28897141 | None:intergenic | 25.0% |
| !!! | ATGGTTCTTTGAAGTATAAT+TGG | - | chr8.3:28895159-28895178 | MS.gene27213:CDS | 25.0% |
| !!! | CCATTTTTCTTTTACAATCT+AGG | + | chr8.3:28897715-28897734 | None:intergenic | 25.0% |
| !!! | GATACAAAAGTTTGTTTTGA+GGG | - | chr8.3:28897655-28897674 | MS.gene27213:intron | 25.0% |
| !!! | TCTTTTTTCACTATTGTGTT+TGG | - | chr8.3:28895358-28895377 | MS.gene27213:CDS | 25.0% |
| !!! | TGGTTCTTTGAAGTATAATT+GGG | - | chr8.3:28895160-28895179 | MS.gene27213:CDS | 25.0% |
| AAAATCAGTTTGTAAGTGAG+AGG | - | chr8.3:28895442-28895461 | MS.gene27213:CDS | 30.0% | |
| AAAATGATAGTTAGGGTCTT+AGG | - | chr8.3:28895758-28895777 | MS.gene27213:CDS | 30.0% | |
| AAATATGGTTTCAGTCCTAT+TGG | - | chr8.3:28896371-28896390 | MS.gene27213:intron | 30.0% | |
| AAATGATAGTTAGGGTCTTA+GGG | - | chr8.3:28895759-28895778 | MS.gene27213:CDS | 30.0% | |
| AAGAAGATAACAAGGATAGT+AGG | + | chr8.3:28895951-28895970 | None:intergenic | 30.0% | |
| ATACTATTATGTCCTTCAAC+CGG | + | chr8.3:28897385-28897404 | None:intergenic | 30.0% | |
| GACTTTCCTTAGACAAATAT+TGG | + | chr8.3:28896826-28896845 | None:intergenic | 30.0% | |
| GCAATCATATTCAAAACAGT+AGG | + | chr8.3:28896909-28896928 | None:intergenic | 30.0% | |
| TTGAAGGACATAATAGTATC+CGG | - | chr8.3:28897386-28897405 | MS.gene27213:CDS | 30.0% | |
| TTGGAACCAATATTTGTCTA+AGG | - | chr8.3:28896817-28896836 | MS.gene27213:intron | 30.0% | |
| TTTATCTCTCTTCTTGACAA+TGG | + | chr8.3:28895741-28895760 | None:intergenic | 30.0% | |
| TTTCCAAGTGTATGACAATT+TGG | + | chr8.3:28894823-28894842 | None:intergenic | 30.0% | |
| ! | ATCTTACCTGTTGAAGTTTT+CGG | + | chr8.3:28897638-28897657 | None:intergenic | 30.0% |
| ! | GGTGTTAAGTTTTCAGAAAT+TGG | - | chr8.3:28896081-28896100 | MS.gene27213:CDS | 30.0% |
| ! | TAGGGTGATAGTAATGTTTT+AGG | - | chr8.3:28895297-28895316 | MS.gene27213:CDS | 30.0% |
| ! | TGAATTAAGAGTACAGAGAA+TGG | + | chr8.3:28896340-28896359 | None:intergenic | 30.0% |
| ! | TTTTTCACTATTGTGTTTGG+TGG | - | chr8.3:28895361-28895380 | MS.gene27213:CDS | 30.0% |
| !! | AAGAAGCATTTAAAGATGGT+TGG | - | chr8.3:28897303-28897322 | MS.gene27213:CDS | 30.0% |
| !! | ACAGAAGAAGCATTTAAAGA+TGG | - | chr8.3:28897299-28897318 | MS.gene27213:CDS | 30.0% |
| !! | GGTTCTTTGAAGTATAATTG+GGG | - | chr8.3:28895161-28895180 | MS.gene27213:CDS | 30.0% |
| !!! | GCACATATTTTTGGAAACAA+TGG | + | chr8.3:28895825-28895844 | None:intergenic | 30.0% |
| AGGTCATTTGTCTAATTAGG+TGG | - | chr8.3:28896039-28896058 | MS.gene27213:CDS | 35.0% | |
| ATGCCAAATTGTCATACACT+TGG | - | chr8.3:28894817-28894836 | MS.gene27213:CDS | 35.0% | |
| CAACCATTAGCATGAAACAA+TGG | + | chr8.3:28896768-28896787 | None:intergenic | 35.0% | |
| CATAAAGTAACATACATGGG+AGG | - | chr8.3:28896879-28896898 | MS.gene27213:intron | 35.0% | |
| CATTGTTTCATGCTAATGGT+TGG | - | chr8.3:28896766-28896785 | MS.gene27213:intron | 35.0% | |
| CCAAAGATAAACAGGAAAGA+GGG | + | chr8.3:28896739-28896758 | None:intergenic | 35.0% | |
| CTATCACTGTTCTCACTTTA+GGG | - | chr8.3:28895279-28895298 | MS.gene27213:CDS | 35.0% | |
| CTGAAACCATATTTGCATCA+AGG | + | chr8.3:28896365-28896384 | None:intergenic | 35.0% | |
| GACAGAACATCACTTGTTTA+TGG | - | chr8.3:28895140-28895159 | MS.gene27213:CDS | 35.0% | |
| GGAACATTCCAAAGATAAAC+AGG | + | chr8.3:28896747-28896766 | None:intergenic | 35.0% | |
| GTTACATCGAAATCAAAGAC+CGG | - | chr8.3:28897363-28897382 | MS.gene27213:CDS | 35.0% | |
| GTTCATGCAATTCCTAAAGT+TGG | - | chr8.3:28895579-28895598 | MS.gene27213:CDS | 35.0% | |
| GTTCCATTGTTTCATGCTAA+TGG | - | chr8.3:28896762-28896781 | MS.gene27213:intron | 35.0% | |
| TATGATTGCGAATTCTACAC+TGG | - | chr8.3:28896920-28896939 | MS.gene27213:intron | 35.0% | |
| TCAAAGATAAAAGCTAGGCA+AGG | - | chr8.3:28897134-28897153 | MS.gene27213:intron | 35.0% | |
| TCAAATATGCACAAGGAGTT+TGG | + | chr8.3:28897511-28897530 | None:intergenic | 35.0% | |
| TCATTTGTCTAATTAGGTGG+TGG | - | chr8.3:28896042-28896061 | MS.gene27213:CDS | 35.0% | |
| TCCAAAGATAAACAGGAAAG+AGG | + | chr8.3:28896740-28896759 | None:intergenic | 35.0% | |
| TCTATCACTGTTCTCACTTT+AGG | - | chr8.3:28895278-28895297 | MS.gene27213:CDS | 35.0% | |
| TGAAGGACATAATAGTATCC+GGG | - | chr8.3:28897387-28897406 | MS.gene27213:CDS | 35.0% | |
| TGTCAAAGATCCTTCAACAA+TGG | - | chr8.3:28897187-28897206 | MS.gene27213:intron | 35.0% | |
| TTATCTAAACTCTCTCGCAA+CGG | - | chr8.3:28896695-28896714 | MS.gene27213:intron | 35.0% | |
| TTCAACAATGGATAGTGTTC+CGG | - | chr8.3:28897199-28897218 | MS.gene27213:intron | 35.0% | |
| TTGGTGAGGTAATGTTTAGA+GGG | - | chr8.3:28897237-28897256 | MS.gene27213:intron | 35.0% | |
| TTTGTCACCTATCAACTTCT+TGG | - | chr8.3:28895094-28895113 | MS.gene27213:CDS | 35.0% | |
| ! | CATTTTCTTCCATCATCGAA+AGG | + | chr8.3:28897013-28897032 | None:intergenic | 35.0% |
| !! | AAAGATGGTTGGTTTCATAG+TGG | - | chr8.3:28897314-28897333 | MS.gene27213:CDS | 35.0% |
| !! | AAGAAGTTGATAGGTGACAA+AGG | + | chr8.3:28895095-28895114 | None:intergenic | 35.0% |
| !! | AGTAGTTGATAGTCTACGAA+TGG | + | chr8.3:28896417-28896436 | None:intergenic | 35.0% |
| !! | CTTTCGATGATGGAAGAAAA+TGG | - | chr8.3:28897011-28897030 | MS.gene27213:intron | 35.0% |
| AAATGCAGCTCATACATTGC+AGG | + | chr8.3:28896297-28896316 | None:intergenic | 40.0% | |
| AAGGACATAATAGTATCCGG+GGG | - | chr8.3:28897389-28897408 | MS.gene27213:CDS | 40.0% | |
| AATGCAGCTCATACATTGCA+GGG | + | chr8.3:28896296-28896315 | None:intergenic | 40.0% | |
| ACAAAGGAACGGAATTTGCA+TGG | + | chr8.3:28895079-28895098 | None:intergenic | 40.0% | |
| AGAAAACATCAGCTCAATCG+AGG | - | chr8.3:28897412-28897431 | MS.gene27213:CDS | 40.0% | |
| AGAGGGAATACAATGATGAG+TGG | - | chr8.3:28897254-28897273 | MS.gene27213:intron | 40.0% | |
| ATAGGATCTAATTCACTGCG+TGG | + | chr8.3:28896609-28896628 | None:intergenic | 40.0% | |
| CCCTCTTTCCTGTTTATCTT+TGG | - | chr8.3:28896736-28896755 | MS.gene27213:intron | 40.0% | |
| GAAGGACATAATAGTATCCG+GGG | - | chr8.3:28897388-28897407 | MS.gene27213:CDS | 40.0% | |
| GATATGCCGAAAACTTCAAC+AGG | - | chr8.3:28897629-28897648 | MS.gene27213:intron | 40.0% | |
| GATCATGGGAATCAATGGAA+GGG | - | chr8.3:28895042-28895061 | MS.gene27213:CDS | 40.0% | |
| GGAACACTATCCATTGTTGA+AGG | + | chr8.3:28897200-28897219 | None:intergenic | 40.0% | |
| GTGATTGAGCAGCTTTCTAT+CGG | + | chr8.3:28896946-28896965 | None:intergenic | 40.0% | |
| TAGAAAGCTGCTCAATCACA+AGG | - | chr8.3:28896947-28896966 | MS.gene27213:intron | 40.0% | |
| TCATACATTGCAGGGACATT+AGG | + | chr8.3:28896288-28896307 | None:intergenic | 40.0% | |
| TGACTGAAGACAACTCCTTT+AGG | + | chr8.3:28896666-28896685 | None:intergenic | 40.0% | |
| TGCTAGACCTGATGATCTAT+GGG | - | chr8.3:28897484-28897503 | MS.gene27213:intron | 40.0% | |
| TTCACGCCTTGATGCAAATA+TGG | - | chr8.3:28896356-28896375 | MS.gene27213:intron | 40.0% | |
| TTGCTAGACCTGATGATCTA+TGG | - | chr8.3:28897483-28897502 | MS.gene27213:intron | 40.0% | |
| TTGCTTGTGAATGCTCCAAT+AGG | + | chr8.3:28896389-28896408 | None:intergenic | 40.0% | |
| ! | AGGCTTTCTTTTCGCTCTTT+TGG | + | chr8.3:28896472-28896491 | None:intergenic | 40.0% |
| ! | CACAAGGTATCAGTGATAAC+CGG | - | chr8.3:28896963-28896982 | MS.gene27213:intron | 40.0% |
| ! | CTTGCTGTGAAACATTCTGA+TGG | - | chr8.3:28897341-28897360 | MS.gene27213:CDS | 40.0% |
| ! | GTTGATAGGTGACAAAGGAA+CGG | + | chr8.3:28895090-28895109 | None:intergenic | 40.0% |
| ! | GTTGGTGAGGTAATGTTTAG+AGG | - | chr8.3:28897236-28897255 | MS.gene27213:intron | 40.0% |
| ! | TAATGGTTGGTGCTTAGCTT+GGG | - | chr8.3:28896779-28896798 | MS.gene27213:intron | 40.0% |
| !! | AGTTTTGTATAGCCATCCAG+CGG | - | chr8.3:28897442-28897461 | MS.gene27213:CDS | 40.0% |
| !! | GGTGGTGATTGATTTTGCTA+GGG | - | chr8.3:28896060-28896079 | MS.gene27213:CDS | 40.0% |
| !! | TGACAAGAGGTGTCAATTTC+AGG | - | chr8.3:28894767-28894786 | MS.gene27213:CDS | 40.0% |
| !! | TGGTGGTGATTGATTTTGCT+AGG | - | chr8.3:28896059-28896078 | MS.gene27213:CDS | 40.0% |
| !! | TTCTTTTCGCTCTTTTGGCT+AGG | + | chr8.3:28896467-28896486 | None:intergenic | 40.0% |
| !!! | GTTTTAGGAGCCATGAAATG+CGG | + | chr8.3:28897596-28897615 | None:intergenic | 40.0% |
| AGATCGTTTGCCGCATTTCA+TGG | - | chr8.3:28897583-28897602 | MS.gene27213:intron | 45.0% | |
| AGGGATTTCTCGTGGAGATA+TGG | - | chr8.3:28895232-28895251 | MS.gene27213:CDS | 45.0% | |
| ATCATCGAAAGGATCTGTGG+CGG | + | chr8.3:28897002-28897021 | None:intergenic | 45.0% | |
| CGAAATCAAAGACCGGTTGA+AGG | - | chr8.3:28897370-28897389 | MS.gene27213:CDS | 45.0% | |
| CTTCTTCTCTCTCCCAGTTA+GGG | - | chr8.3:28895213-28895232 | MS.gene27213:CDS | 45.0% | |
| GCTAGACCTGATGATCTATG+GGG | - | chr8.3:28897485-28897504 | MS.gene27213:intron | 45.0% | |
| GGATCATGGGAATCAATGGA+AGG | - | chr8.3:28895041-28895060 | MS.gene27213:CDS | 45.0% | |
| TATGGCCTCACAGAAACATG+TGG | - | chr8.3:28897053-28897072 | MS.gene27213:intron | 45.0% | |
| TCACAGAAACATGTGGTGCA+GGG | - | chr8.3:28897060-28897079 | MS.gene27213:intron | 45.0% | |
| TCCACGAGAAATCCCTAACT+GGG | + | chr8.3:28895228-28895247 | None:intergenic | 45.0% | |
| TCCAGGATCATGGGAATCAA+TGG | - | chr8.3:28895037-28895056 | MS.gene27213:CDS | 45.0% | |
| TCCATCATCGAAAGGATCTG+TGG | + | chr8.3:28897005-28897024 | None:intergenic | 45.0% | |
| TGTTCCGGCTGATGGAAAAA+CGG | - | chr8.3:28897214-28897233 | MS.gene27213:intron | 45.0% | |
| ! | AAGGTATCAGTGATAACCGG+AGG | - | chr8.3:28896966-28896985 | MS.gene27213:intron | 45.0% |
| ! | AATGGTTGGTGCTTAGCTTG+GGG | - | chr8.3:28896780-28896799 | MS.gene27213:intron | 45.0% |
| ! | CTAATGGTTGGTGCTTAGCT+TGG | - | chr8.3:28896778-28896797 | MS.gene27213:intron | 45.0% |
| ! | GCTCTCTCCAAGAAGTTGAT+AGG | + | chr8.3:28895104-28895123 | None:intergenic | 45.0% |
| ! | GGTATCAGAGCCTATCGATT+CGG | + | chr8.3:28895388-28895407 | None:intergenic | 45.0% |
| ! | TGATGGAAAAACGGTTGGTG+AGG | - | chr8.3:28897223-28897242 | MS.gene27213:intron | 45.0% |
| !! | TCCATTGATTCCCATGATCC+TGG | + | chr8.3:28895041-28895060 | None:intergenic | 45.0% |
| !! | TTTTCGCTCTTTTGGCTAGG+AGG | + | chr8.3:28896464-28896483 | None:intergenic | 45.0% |
| !!! | TGTTTTGAGGGAGAAAGCCA+AGG | - | chr8.3:28897667-28897686 | MS.gene27213:intron | 45.0% |
| !!! | TTTTTTCAGGACGCTGTTCC+AGG | - | chr8.3:28895020-28895039 | MS.gene27213:CDS | 45.0% |
| ACACCTCTGGCACTACATCT+AGG | - | chr8.3:28896640-28896659 | MS.gene27213:intron | 50.0% | |
| AGAAATGCTTCCCAAGGCCT+TGG | + | chr8.3:28897687-28897706 | None:intergenic | 50.0% | |
| AGGCAAGGTGTACCACATGT+AGG | - | chr8.3:28897149-28897168 | MS.gene27213:intron | 50.0% | |
| AGGGACATTAGGTGCTAGTG+TGG | + | chr8.3:28896277-28896296 | None:intergenic | 50.0% | |
| AGGTGTACCACATGTAGGGT+TGG | - | chr8.3:28897154-28897173 | MS.gene27213:intron | 50.0% | |
| AGTGGCATCTCGAAACTGAG+CGG | + | chr8.3:28896113-28896132 | None:intergenic | 50.0% | |
| AGTTCCTCCAACCCTACATG+TGG | + | chr8.3:28897164-28897183 | None:intergenic | 50.0% | |
| ATGGATAGTGTTCCGGCTGA+TGG | - | chr8.3:28897206-28897225 | MS.gene27213:intron | 50.0% | |
| CAACTACTCGAAGTTGCTCG+AGG | - | chr8.3:28896429-28896448 | MS.gene27213:intron | 50.0% | |
| CATTTCGCAGTACCAATGGC+TGG | - | chr8.3:28896312-28896331 | MS.gene27213:intron | 50.0% | |
| CTCACAGAAACATGTGGTGC+AGG | - | chr8.3:28897059-28897078 | MS.gene27213:intron | 50.0% | |
| CTCCACGAGAAATCCCTAAC+TGG | + | chr8.3:28895229-28895248 | None:intergenic | 50.0% | |
| CTTCTTGGAGAGAGCAGCAA+AGG | - | chr8.3:28895109-28895128 | MS.gene27213:CDS | 50.0% | |
| GCATCAAAGCCAACAAGCAC+AGG | + | chr8.3:28896197-28896216 | None:intergenic | 50.0% | |
| GCCACAGATCCTTTCGATGA+TGG | - | chr8.3:28897001-28897020 | MS.gene27213:intron | 50.0% | |
| GCTGCATTTCGCAGTACCAA+TGG | - | chr8.3:28896308-28896327 | MS.gene27213:intron | 50.0% | |
| GCTTCTTCTCTCTCCCAGTT+AGG | - | chr8.3:28895212-28895231 | MS.gene27213:CDS | 50.0% | |
| GGAGTTGTCTTCAGTCACAG+AGG | - | chr8.3:28896669-28896688 | MS.gene27213:intron | 50.0% | |
| GGCAAGGTGTACCACATGTA+GGG | - | chr8.3:28897150-28897169 | MS.gene27213:intron | 50.0% | |
| GGCACTACATCTAGGCCTAA+AGG | - | chr8.3:28896648-28896667 | MS.gene27213:intron | 50.0% | |
| GTTTGGCCCCATAGATCATC+AGG | + | chr8.3:28897494-28897513 | None:intergenic | 50.0% | |
| TCCCAGTTAGGGATTTCTCG+TGG | - | chr8.3:28895224-28895243 | MS.gene27213:CDS | 50.0% | |
| TGTACCACATGTAGGGTTGG+AGG | - | chr8.3:28897157-28897176 | MS.gene27213:intron | 50.0% | |
| TTGTGCTTGGAGACCTGAGT+GGG | - | chr8.3:28897088-28897107 | MS.gene27213:intron | 50.0% | |
| TTTGTGCTTGGAGACCTGAG+TGG | - | chr8.3:28897087-28897106 | MS.gene27213:intron | 50.0% | |
| ! | CTGCACCACATGTTTCTGTG+AGG | + | chr8.3:28897061-28897080 | None:intergenic | 50.0% |
| ! | GTGCAGGGACTTTTTGTGCT+TGG | - | chr8.3:28897075-28897094 | MS.gene27213:intron | 50.0% |
| ! | GTTTGGTGGTCCGAATCGAT+AGG | - | chr8.3:28895375-28895394 | MS.gene27213:CDS | 50.0% |
| ! | TGAGCTGATGTTTTCTCCCC+CGG | + | chr8.3:28897408-28897427 | None:intergenic | 50.0% |
| !! | AAGGCCTTGGGAAGCATTTC+TGG | - | chr8.3:28897686-28897705 | MS.gene27213:intron | 50.0% |
| !! | CCAACCGTTTTTCCATCAGC+CGG | + | chr8.3:28897221-28897240 | None:intergenic | 50.0% |
| !! | GTTGGCTTTGATGCTCAGCA+AGG | - | chr8.3:28896203-28896222 | MS.gene27213:CDS | 50.0% |
| AGGACGCTGTTCCAGGATCA+TGG | - | chr8.3:28895027-28895046 | MS.gene27213:CDS | 55.0% | |
| AGGCCTAGATGTAGTGCCAG+AGG | + | chr8.3:28896646-28896665 | None:intergenic | 55.0% | |
| AGGGAGAAAGCCAAGGCCTT+GGG | - | chr8.3:28897674-28897693 | MS.gene27213:intron | 55.0% | |
| ATCGAAAGGATCTGTGGCGG+TGG | + | chr8.3:28896999-28897018 | None:intergenic | 55.0% | |
| CAGAGAATGGCTCCAGCCAT+TGG | + | chr8.3:28896327-28896346 | None:intergenic | 55.0% | |
| CCGGCTGATGGAAAAACGGT+TGG | - | chr8.3:28897218-28897237 | MS.gene27213:intron | 55.0% | |
| GCACTGTGACCTGTGCTTGT+TGG | - | chr8.3:28896185-28896204 | MS.gene27213:CDS | 55.0% | |
| GGACGCTGTTCCAGGATCAT+GGG | - | chr8.3:28895028-28895047 | MS.gene27213:CDS | 55.0% | |
| GGAGGTAACATGTCCCACTC+AGG | + | chr8.3:28897104-28897123 | None:intergenic | 55.0% | |
| GGGTCCAGAAATGCTTCCCA+AGG | + | chr8.3:28897693-28897712 | None:intergenic | 55.0% | |
| TAGCCATCCAGCGGTCTTAG+AGG | - | chr8.3:28897451-28897470 | MS.gene27213:CDS | 55.0% | |
| ! | CGAAGTTGCTCGAGGAGCAT+TGG | - | chr8.3:28896437-28896456 | MS.gene27213:intron | 55.0% |
| ! | TTGGTGCTTAGCTTGGGGAG+TGG | - | chr8.3:28896785-28896804 | MS.gene27213:intron | 55.0% |
| GAAAGGATCTGTGGCGGTGG+AGG | + | chr8.3:28896996-28897015 | None:intergenic | 60.0% | |
| GAGGGAGAAAGCCAAGGCCT+TGG | - | chr8.3:28897673-28897692 | MS.gene27213:intron | 60.0% | |
| TCCAGCGGTCTTAGAGGCTG+CGG | - | chr8.3:28897457-28897476 | MS.gene27213:CDS | 60.0% | |
| TGGGGAGTGGCAGCACAGTT+TGG | - | chr8.3:28896798-28896817 | MS.gene27213:intron | 60.0% | |
| !! | CAGCCTCTAAGACCGCTGGA+TGG | + | chr8.3:28897457-28897476 | None:intergenic | 60.0% |
| TGGCGGTGGAGGAGAACCTC+CGG | + | chr8.3:28896985-28897004 | None:intergenic | 65.0% | |
| !! | ACCGCAGCCTCTAAGACCGC+TGG | + | chr8.3:28897461-28897480 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 28894751 | 28897763 | 28894751 | ID=MS.gene27213 |
| chr8.3 | mRNA | 28894751 | 28897763 | 28894751 | ID=MS.gene27213.t1;Parent=MS.gene27213 |
| chr8.3 | exon | 28897761 | 28897763 | 28897761 | ID=MS.gene27213.t1.exon1;Parent=MS.gene27213.t1 |
| chr8.3 | CDS | 28897761 | 28897763 | 28897761 | ID=cds.MS.gene27213.t1;Parent=MS.gene27213.t1 |
| chr8.3 | exon | 28897261 | 28897485 | 28897261 | ID=MS.gene27213.t1.exon2;Parent=MS.gene27213.t1 |
| chr8.3 | CDS | 28897261 | 28897485 | 28897261 | ID=cds.MS.gene27213.t1;Parent=MS.gene27213.t1 |
| chr8.3 | exon | 28894751 | 28896244 | 28894751 | ID=MS.gene27213.t1.exon3;Parent=MS.gene27213.t1 |
| chr8.3 | CDS | 28894751 | 28896244 | 28894751 | ID=cds.MS.gene27213.t1;Parent=MS.gene27213.t1 |
| Gene Sequence |
| Protein sequence |
