Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057980.t1 | AES69158.1 | 90.2 | 102 | 9 | 1 | 117 | 217 | 28 | 129 | 1.30E-44 | 189.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057980.t1 | G7J1P4 | 90.2 | 102 | 9 | 1 | 117 | 217 | 28 | 129 | 9.1e-45 | 189.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050227 | MS.gene057980 | 0.808093 | 3.67E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene057980 | 0.816394 | 5.66E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene057980 | 0.817517 | 3.17E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene057980 | 0.818902 | 1.54E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene057980 | 0.803339 | 3.65E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene06705 | 0.820447 | 6.83E-53 | -1.69E-46 |
| MS.gene057980 | MS.gene068727 | 0.805765 | 1.14E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene06922 | 0.824305 | 8.68E-54 | -1.69E-46 |
| MS.gene057980 | MS.gene07084 | 0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene072624 | 0.816789 | 4.61E-52 | -1.69E-46 |
| MS.gene057980 | MS.gene072627 | 0.815968 | 7.04E-52 | -1.69E-46 |
| MS.gene057980 | MS.gene072630 | 0.814334 | 1.62E-51 | -1.69E-46 |
| MS.gene057980 | MS.gene072945 | 0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene074527 | 0.812779 | 3.57E-51 | -1.69E-46 |
| MS.gene057980 | MS.gene21149 | 0.802849 | 4.62E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene28204 | 0.808989 | 2.36E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene28514 | 0.81514 | 1.08E-51 | -1.69E-46 |
| MS.gene057980 | MS.gene29380 | 0.802871 | 4.57E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene32589 | 0.811972 | 5.36E-51 | -1.69E-46 |
| MS.gene057980 | MS.gene38106 | 0.801148 | 1.03E-48 | -1.69E-46 |
| MS.gene057980 | MS.gene38162 | 0.804035 | 2.62E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene43886 | 0.814711 | 1.34E-51 | -1.69E-46 |
| MS.gene057980 | MS.gene44986 | 0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene45578 | 0.803148 | 4.00E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene49003 | 0.818575 | 1.82E-52 | -1.69E-46 |
| MS.gene057980 | MS.gene51588 | 0.800748 | 1.25E-48 | -1.69E-46 |
| MS.gene057980 | MS.gene51850 | 0.810219 | 1.29E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene54544 | 0.805599 | 1.24E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene56537 | 0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene57107 | 0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene57160 | -0.802405 | 5.70E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene57162 | -0.812366 | 4.40E-51 | -1.69E-46 |
| MS.gene057980 | MS.gene59305 | 0.805629 | 1.22E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene59876 | 0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene66474 | 0.802606 | 5.18E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene70651 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene70811 | 0.818331 | 2.07E-52 | -1.69E-46 |
| MS.gene057980 | MS.gene76403 | 0.8071 | 5.96E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene78247 | 0.817661 | 2.94E-52 | -1.69E-46 |
| MS.gene057980 | MS.gene79202 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene84086 | 0.8103 | 1.23E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene84396 | 0.818343 | 2.06E-52 | -1.69E-46 |
| MS.gene057980 | MS.gene87377 | 0.818187 | 2.23E-52 | -1.69E-46 |
| MS.gene057980 | MS.gene89096 | 0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene057980 | MS.gene93457 | 0.801529 | 8.62E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene95236 | 0.803019 | 4.26E-49 | -1.69E-46 |
| MS.gene057980 | MS.gene96791 | 0.821788 | 3.35E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057980.t1 | MTR_8g105450 | 92.793 | 111 | 8 | 0 | 1 | 111 | 651 | 761 | 1.38e-64 | 213 |
| MS.gene057980.t1 | MTR_8g105355 | 92.793 | 111 | 8 | 0 | 1 | 111 | 652 | 762 | 1.43e-64 | 213 |
| MS.gene057980.t1 | MTR_3g023230 | 91.089 | 101 | 8 | 1 | 117 | 216 | 28 | 128 | 4.89e-60 | 188 |
| MS.gene057980.t1 | MTR_1g102610 | 92.222 | 90 | 5 | 1 | 1 | 88 | 54 | 143 | 3.43e-53 | 168 |
| MS.gene057980.t1 | MTR_1g031730 | 69.608 | 102 | 25 | 4 | 117 | 216 | 30 | 127 | 5.53e-37 | 128 |
| MS.gene057980.t1 | MTR_5g088900 | 64.151 | 106 | 38 | 0 | 6 | 111 | 617 | 722 | 1.59e-34 | 130 |
| MS.gene057980.t1 | MTR_8g080260 | 55.814 | 86 | 35 | 1 | 20 | 102 | 124 | 209 | 1.36e-22 | 92.0 |
| MS.gene057980.t1 | MTR_3g081310 | 57.647 | 85 | 34 | 2 | 1 | 85 | 446 | 528 | 1.57e-18 | 84.0 |
| MS.gene057980.t1 | MTR_5g095150 | 44.444 | 72 | 40 | 0 | 47 | 118 | 1 | 72 | 2.58e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057980.t1 | AT3G02650 | 46.429 | 84 | 43 | 2 | 1 | 84 | 458 | 539 | 1.58e-11 | 63.5 |
Find 46 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCTTCGCTTGATGGATA+TGG | 0.210260 | 3.4:-14742703 | MS.gene057980:CDS |
| TCCATCTCCTTCAAGAAATA+AGG | 0.240281 | 3.4:+14741606 | None:intergenic |
| TTGACTCAGATGAAGGATTT+TGG | 0.241447 | 3.4:-14742768 | MS.gene057980:CDS |
| CATATGAAATCACCATATTC+TGG | 0.262324 | 3.4:+14740753 | None:intergenic |
| TGTGTTAAGGAGTTGGTTCC+AGG | 0.329012 | 3.4:-14740944 | MS.gene057980:intron |
| GATCCAACATCTTCGCTTGA+TGG | 0.331184 | 3.4:-14742709 | MS.gene057980:CDS |
| CGTCAGTGGAACCCAGAATA+TGG | 0.356364 | 3.4:-14740765 | MS.gene057980:CDS |
| CAAAAGGCATGCTACATATC+AGG | 0.369397 | 3.4:-14742905 | None:intergenic |
| GATGGATATGGATTGCAAAA+TGG | 0.377712 | 3.4:-14742691 | MS.gene057980:CDS |
| CTATGAGACAGTTGCTTGAA+TGG | 0.378644 | 3.4:-14741662 | MS.gene057980:CDS |
| CTGTACCATACACTCATTGT+TGG | 0.397421 | 3.4:-14742831 | MS.gene057980:CDS |
| TGCGAGCTAGAGAAATTTGA+TGG | 0.403271 | 3.4:-14742804 | MS.gene057980:CDS |
| TATGAGACAGTTGCTTGAAT+GGG | 0.420424 | 3.4:-14741661 | MS.gene057980:CDS |
| CTTGTGATATTCATCAAGAT+TGG | 0.424959 | 3.4:+14742734 | None:intergenic |
| TATTGCCACTTCCCTATCCA+TGG | 0.440296 | 3.4:+14742641 | None:intergenic |
| CGACGAATGTGTTAAGGAGT+TGG | 0.450423 | 3.4:-14740951 | MS.gene057980:CDS |
| TACTCGTGATTCTCTGCCAC+AGG | 0.453424 | 3.4:-14740984 | MS.gene057980:CDS |
| GAAGGAGATGGAAGAATTGA+AGG | 0.453950 | 3.4:-14741595 | MS.gene057980:CDS |
| GCTACATATCAGGAAGATCT+TGG | 0.457479 | 3.4:-14742895 | MS.gene057980:CDS |
| GGAAATAGAGCCCATGGATA+GGG | 0.461958 | 3.4:-14742652 | MS.gene057980:CDS |
| AGTGGCTCCTTATTTCTTGA+AGG | 0.473271 | 3.4:-14741613 | MS.gene057980:CDS |
| CGAGTTATTGACTCAGATGA+AGG | 0.473910 | 3.4:-14742775 | MS.gene057980:CDS |
| AATATCCAACAATGAGTGTA+TGG | 0.476964 | 3.4:+14742826 | None:intergenic |
| CTTAATTGTCAGGGCGCAAA+AGG | 0.477030 | 3.4:-14741045 | MS.gene057980:intron |
| ATATGAAATCACCATATTCT+GGG | 0.482590 | 3.4:+14740754 | None:intergenic |
| GATACATTTCACCTAGCTGC+TGG | 0.494753 | 3.4:+14742574 | None:intergenic |
| TCCTTATTTCTTGAAGGAGA+TGG | 0.514142 | 3.4:-14741607 | MS.gene057980:CDS |
| AAACTAAGCAGATGCTGAGC+CGG | 0.515920 | 3.4:-14740794 | MS.gene057980:CDS |
| AGGAAATAGAGCCCATGGAT+AGG | 0.524706 | 3.4:-14742653 | MS.gene057980:CDS |
| AATAACGCAGATAAACGAAA+TGG | 0.535337 | 3.4:-14742622 | MS.gene057980:CDS |
| ATTGCCACTTCCCTATCCAT+GGG | 0.552141 | 3.4:+14742642 | None:intergenic |
| AGAGCCCATGGATAGGGAAG+TGG | 0.556177 | 3.4:-14742646 | MS.gene057980:CDS |
| GCTAGAGGAAATAGAGCCCA+TGG | 0.571301 | 3.4:-14742658 | MS.gene057980:CDS |
| ATGTTGAACTCAGTCTATGT+TGG | 0.592850 | 3.4:-14742421 | MS.gene057980:intron |
| TATCCATCAAGCGAAGATGT+TGG | 0.594302 | 3.4:+14742706 | None:intergenic |
| ATGAGACAGTTGCTTGAATG+GGG | 0.600528 | 3.4:-14741660 | MS.gene057980:CDS |
| AAGGAGATGGAAGAATTGAA+GGG | 0.601291 | 3.4:-14741594 | MS.gene057980:intron |
| GATTTACCTGATGTTAAACA+CGG | 0.617922 | 3.4:-14741699 | MS.gene057980:CDS |
| TAGCTGCTGGTATGCCACAT+CGG | 0.624445 | 3.4:+14742587 | None:intergenic |
| GATATTCATCAAGATTGGTG+TGG | 0.643142 | 3.4:+14742739 | None:intergenic |
| GATGTGGCATACCAGCAGCT+AGG | 0.647092 | 3.4:-14742585 | MS.gene057980:intron |
| ATATTCATCAAGATTGGTGT+GGG | 0.649549 | 3.4:+14742740 | None:intergenic |
| AATGGCAAGAGAGCAGCTAG+AGG | 0.653401 | 3.4:-14742673 | MS.gene057980:CDS |
| TCGTCGAAAACTAAAACCTG+TGG | 0.697134 | 3.4:+14740968 | None:intergenic |
| ACGCAGATAAACGAAATGGA+CGG | 0.700214 | 3.4:-14742618 | MS.gene057980:CDS |
| GGACGGTATAGCTTCCGATG+TGG | 0.719825 | 3.4:-14742601 | MS.gene057980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTATTATAATTAAAGAA+AGG | + | chr3.4:14741643-14741662 | None:intergenic | 10.0% |
| !! | GATATTAAGAAAAAATGATT+AGG | - | chr3.4:14741163-14741182 | MS.gene057980:intron | 15.0% |
| !! | TGAAATGTATCTTAATATTA+GGG | - | chr3.4:14741087-14741106 | MS.gene057980:intron | 15.0% |
| !!! | CAAATAATTTAGAACTAAAT+TGG | - | chr3.4:14742820-14742839 | MS.gene057980:CDS | 15.0% |
| !!! | TTTTGATAGATATTTTAAAG+TGG | - | chr3.4:14742018-14742037 | MS.gene057980:intron | 15.0% |
| !! | AAAACAAATGAAAACAAAAC+TGG | - | chr3.4:14741674-14741693 | MS.gene057980:CDS | 20.0% |
| !! | AAACAAATGAAAACAAAACT+GGG | - | chr3.4:14741675-14741694 | MS.gene057980:CDS | 20.0% |
| !! | GTGAAATGTATCTTAATATT+AGG | - | chr3.4:14741086-14741105 | MS.gene057980:intron | 20.0% |
| !! | TCACAATATATATCATGTAA+AGG | + | chr3.4:14742095-14742114 | None:intergenic | 20.0% |
| !!! | ATAATGAGTTTGATAACATA+GGG | + | chr3.4:14741494-14741513 | None:intergenic | 20.0% |
| !!! | GAATATTTTCAATGCTTATA+TGG | - | chr3.4:14742537-14742556 | MS.gene057980:intron | 20.0% |
| !!! | GTTTTGTTTTCATTTGTTTT+TGG | + | chr3.4:14741674-14741693 | None:intergenic | 20.0% |
| !!! | TTTTTATGATTTAAACTTGG+TGG | + | chr3.4:14741471-14741490 | None:intergenic | 20.0% |
| ! | AAGAAAAAATGATTAGGAGT+CGG | - | chr3.4:14741169-14741188 | MS.gene057980:intron | 25.0% |
| ! | ACATGATATATATTGTGAGA+TGG | - | chr3.4:14742097-14742116 | MS.gene057980:intron | 25.0% |
| ! | ATATGAAATCACCATATTCT+GGG | + | chr3.4:14742898-14742917 | None:intergenic | 25.0% |
| ! | CAACATAACAATCTATTAGA+AGG | + | chr3.4:14741214-14741233 | None:intergenic | 25.0% |
| ! | CGTTAGACAATAATATATCA+TGG | + | chr3.4:14742423-14742442 | None:intergenic | 25.0% |
| ! | TAATGACATCGTTATCAAAA+AGG | + | chr3.4:14741273-14741292 | None:intergenic | 25.0% |
| !! | AATAATGGAATAGGATTTAC+GGG | - | chr3.4:14742732-14742751 | MS.gene057980:CDS | 25.0% |
| !! | AGAACTAAATTGGTAATTTC+AGG | - | chr3.4:14742830-14742849 | MS.gene057980:CDS | 25.0% |
| !! | ATGTCTTTGGAAGATTATTA+CGG | - | chr3.4:14742357-14742376 | MS.gene057980:intron | 25.0% |
| !! | CATAATGAGTTTGATAACAT+AGG | + | chr3.4:14741495-14741514 | None:intergenic | 25.0% |
| !! | GAATAATGGAATAGGATTTA+CGG | - | chr3.4:14742731-14742750 | MS.gene057980:CDS | 25.0% |
| !! | GGGTTTTTATGATTTAAACT+TGG | + | chr3.4:14741474-14741493 | None:intergenic | 25.0% |
| !! | GGTCAAATTTTAAACTTTGA+GGG | + | chr3.4:14742240-14742259 | None:intergenic | 25.0% |
| !! | GTCCTCTAAAAATTTGAATA+TGG | - | chr3.4:14742171-14742190 | MS.gene057980:intron | 25.0% |
| !! | TGGTCAAATTTTAAACTTTG+AGG | + | chr3.4:14742241-14742260 | None:intergenic | 25.0% |
| !!! | AGCCATATTCAAATTTTTAG+AGG | + | chr3.4:14742176-14742195 | None:intergenic | 25.0% |
| !!! | CTTTGTTTGTCATACAATTT+TGG | - | chr3.4:14741550-14741569 | MS.gene057980:intron | 25.0% |
| !!! | TATTAGGGCATTATTTTGAT+AGG | - | chr3.4:14741102-14741121 | MS.gene057980:intron | 25.0% |
| !!! | TTTAGTGATAGTTTTGTATC+TGG | - | chr3.4:14742317-14742336 | MS.gene057980:intron | 25.0% |
| AAAACTAGTATGAAGCAAGA+GGG | - | chr3.4:14741811-14741830 | MS.gene057980:intron | 30.0% | |
| AATAACGCAGATAAACGAAA+TGG | - | chr3.4:14741027-14741046 | MS.gene057980:CDS | 30.0% | |
| AATATCCAACAATGAGTGTA+TGG | + | chr3.4:14740826-14740845 | None:intergenic | 30.0% | |
| AATGTGGCTTTCAAATGATT+AGG | + | chr3.4:14742389-14742408 | None:intergenic | 30.0% | |
| AGAATCTAGAGAGAGAATTA+AGG | - | chr3.4:14741707-14741726 | MS.gene057980:CDS | 30.0% | |
| ATAAGGAATGAAATACTTCC+TGG | - | chr3.4:14742468-14742487 | MS.gene057980:intron | 30.0% | |
| ATATTCATCAAGATTGGTGT+GGG | + | chr3.4:14740912-14740931 | None:intergenic | 30.0% | |
| ATCATTTGAAAGCCACATTT+AGG | - | chr3.4:14742390-14742409 | MS.gene057980:intron | 30.0% | |
| ATGTGGCTTTCAAATGATTA+GGG | + | chr3.4:14742388-14742407 | None:intergenic | 30.0% | |
| ATTGTCTAACGTATCTAACA+TGG | - | chr3.4:14742432-14742451 | MS.gene057980:intron | 30.0% | |
| CAGATATTTAGGGACAAATA+TGG | + | chr3.4:14742565-14742584 | None:intergenic | 30.0% | |
| CATATGAAATCACCATATTC+TGG | + | chr3.4:14742899-14742918 | None:intergenic | 30.0% | |
| CATATTTGTCCCTAAATATC+TGG | - | chr3.4:14742563-14742582 | MS.gene057980:intron | 30.0% | |
| CATGGAATAAATCCTAAATG+TGG | + | chr3.4:14742405-14742424 | None:intergenic | 30.0% | |
| CTTGTGATATTCATCAAGAT+TGG | + | chr3.4:14740918-14740937 | None:intergenic | 30.0% | |
| GATTTACCTGATGTTAAACA+CGG | - | chr3.4:14741950-14741969 | MS.gene057980:intron | 30.0% | |
| TAAAACTAGTATGAAGCAAG+AGG | - | chr3.4:14741810-14741829 | MS.gene057980:intron | 30.0% | |
| TCACCAAATTAGAATTAGAG+TGG | - | chr3.4:14742274-14742293 | MS.gene057980:intron | 30.0% | |
| TCACCACTCTAATTCTAATT+TGG | + | chr3.4:14742280-14742299 | None:intergenic | 30.0% | |
| TGACAATTAAGCAAGAAAAG+CGG | + | chr3.4:14742595-14742614 | None:intergenic | 30.0% | |
| TGATAAAGAAAACCGCAATT+TGG | - | chr3.4:14742149-14742168 | MS.gene057980:intron | 30.0% | |
| TGATGTTAAACACGGAAAAA+TGG | - | chr3.4:14741958-14741977 | MS.gene057980:intron | 30.0% | |
| ! | ATTTTTCCGTGTTTAACATC+AGG | + | chr3.4:14741959-14741978 | None:intergenic | 30.0% |
| ! | CTTTTCTTGCTTAATTGTCA+GGG | - | chr3.4:14742595-14742614 | MS.gene057980:CDS | 30.0% |
| ! | GTCAATCAATTTTATGCATG+TGG | - | chr3.4:14741304-14741323 | MS.gene057980:intron | 30.0% |
| ! | TACTTTTCTTTATGCCTTTG+AGG | - | chr3.4:14742787-14742806 | MS.gene057980:CDS | 30.0% |
| ! | TTGGTGATAAATTCTCAACA+TGG | + | chr3.4:14742261-14742280 | None:intergenic | 30.0% |
| !! | AAGACAGAGTAAAGTATTGT+TGG | + | chr3.4:14741533-14741552 | None:intergenic | 30.0% |
| !! | ATTTTTAGAGGACCAAATTG+CGG | + | chr3.4:14742164-14742183 | None:intergenic | 30.0% |
| !! | TAACTTACAATCCTGCTTTT+TGG | + | chr3.4:14740786-14740805 | None:intergenic | 30.0% |
| !!! | GGAAATGGTTATGTTTTTTG+TGG | - | chr3.4:14742753-14742772 | MS.gene057980:CDS | 30.0% |
| AAGGAGATGGAAGAATTGAA+GGG | - | chr3.4:14742055-14742074 | MS.gene057980:intron | 35.0% | |
| ATGTTGAACTCAGTCTATGT+TGG | - | chr3.4:14741228-14741247 | MS.gene057980:intron | 35.0% | |
| CAGAGAATCACGAGTAAAAA+TGG | + | chr3.4:14742661-14742680 | None:intergenic | 35.0% | |
| CCTATTCCATTATTCATACC+TGG | + | chr3.4:14742726-14742745 | None:intergenic | 35.0% | |
| CTTTATCAATCTGATGCTAC+AGG | - | chr3.4:14741922-14741941 | MS.gene057980:intron | 35.0% | |
| GACAATTAAGCAAGAAAAGC+GGG | + | chr3.4:14742594-14742613 | None:intergenic | 35.0% | |
| GATATTCATCAAGATTGGTG+TGG | + | chr3.4:14740913-14740932 | None:intergenic | 35.0% | |
| TATGAGACAGTTGCTTGAAT+GGG | - | chr3.4:14741988-14742007 | MS.gene057980:intron | 35.0% | |
| TCCATCTCCTTCAAGAAATA+AGG | + | chr3.4:14742046-14742065 | None:intergenic | 35.0% | |
| TGAGTCTGTGTATGTATGAA+TGG | + | chr3.4:14741596-14741615 | None:intergenic | 35.0% | |
| TTGGTTCCAGGTATGAATAA+TGG | - | chr3.4:14742717-14742736 | MS.gene057980:CDS | 35.0% | |
| ! | AGTGTGATGACAAGTTTTTG+TGG | + | chr3.4:14742214-14742233 | None:intergenic | 35.0% |
| ! | AGTTTTCGACGAATGTGTTA+AGG | - | chr3.4:14742692-14742711 | MS.gene057980:CDS | 35.0% |
| ! | CCAGGTATGAATAATGGAAT+AGG | - | chr3.4:14742723-14742742 | MS.gene057980:CDS | 35.0% |
| ! | GATGGATATGGATTGCAAAA+TGG | - | chr3.4:14740958-14740977 | MS.gene057980:CDS | 35.0% |
| ! | GCTTTTCTTGCTTAATTGTC+AGG | - | chr3.4:14742594-14742613 | MS.gene057980:CDS | 35.0% |
| ! | GTGTGATGACAAGTTTTTGT+GGG | + | chr3.4:14742213-14742232 | None:intergenic | 35.0% |
| ! | TCCTTATTTCTTGAAGGAGA+TGG | - | chr3.4:14742042-14742061 | MS.gene057980:intron | 35.0% |
| ! | TCTTTGGAAGATTATTACGG+TGG | - | chr3.4:14742360-14742379 | MS.gene057980:intron | 35.0% |
| ! | TTGACTCAGATGAAGGATTT+TGG | - | chr3.4:14740881-14740900 | MS.gene057980:intron | 35.0% |
| !! | CATTGATTTGGTGATGTCTT+TGG | - | chr3.4:14742344-14742363 | MS.gene057980:intron | 35.0% |
| !!! | GTGATAGTTTTGTATCTGGA+AGG | - | chr3.4:14742321-14742340 | MS.gene057980:intron | 35.0% |
| AATTAAGCAAGAAAAGCGGG+AGG | + | chr3.4:14742591-14742610 | None:intergenic | 40.0% | |
| ACGCAGATAAACGAAATGGA+CGG | - | chr3.4:14741031-14741050 | MS.gene057980:CDS | 40.0% | |
| AGAGAGAGAAAGTGAGAGAA+AGG | + | chr3.4:14741752-14741771 | None:intergenic | 40.0% | |
| AGTTGTGAGAATGAACGAGA+CGG | + | chr3.4:14741782-14741801 | None:intergenic | 40.0% | |
| ATGAGACAGTTGCTTGAATG+GGG | - | chr3.4:14741989-14742008 | MS.gene057980:intron | 40.0% | |
| ATGGCTTGACGATACTCATA+AGG | - | chr3.4:14742451-14742470 | MS.gene057980:intron | 40.0% | |
| CACTCATAAACAACGTTGCA+TGG | - | chr3.4:14741432-14741451 | MS.gene057980:intron | 40.0% | |
| CTATGAGACAGTTGCTTGAA+TGG | - | chr3.4:14741987-14742006 | MS.gene057980:intron | 40.0% | |
| CTGTACCATACACTCATTGT+TGG | - | chr3.4:14740818-14740837 | MS.gene057980:intron | 40.0% | |
| GAAGGAGATGGAAGAATTGA+AGG | - | chr3.4:14742054-14742073 | MS.gene057980:intron | 40.0% | |
| GATGGAAGAATTGAAGGGTA+TGG | - | chr3.4:14742060-14742079 | MS.gene057980:intron | 40.0% | |
| GCTACATATCAGGAAGATCT+TGG | - | chr3.4:14740754-14740773 | MS.gene057980:CDS | 40.0% | |
| GGAATAGGATTTACGGGAAA+TGG | - | chr3.4:14742738-14742757 | MS.gene057980:CDS | 40.0% | |
| TAGAGTGGTGACAATGACTT+TGG | - | chr3.4:14742289-14742308 | MS.gene057980:intron | 40.0% | |
| TATCCATCAAGCGAAGATGT+TGG | + | chr3.4:14740946-14740965 | None:intergenic | 40.0% | |
| TCGTCGAAAACTAAAACCTG+TGG | + | chr3.4:14742684-14742703 | None:intergenic | 40.0% | |
| TGAGTGTGTGATGAGCAATT+CGG | + | chr3.4:14741418-14741437 | None:intergenic | 40.0% | |
| TGCGAGCTAGAGAAATTTGA+TGG | - | chr3.4:14740845-14740864 | MS.gene057980:intron | 40.0% | |
| TGTACATCTGCTCATATTCC+AGG | + | chr3.4:14742489-14742508 | None:intergenic | 40.0% | |
| TTTGTTGCCAGAAACCTCAA+AGG | + | chr3.4:14742804-14742823 | None:intergenic | 40.0% | |
| ! | ACATCTTCGCTTGATGGATA+TGG | - | chr3.4:14740946-14740965 | MS.gene057980:CDS | 40.0% |
| ! | AGTGGCTCCTTATTTCTTGA+AGG | - | chr3.4:14742036-14742055 | MS.gene057980:intron | 40.0% |
| ! | ATGTGGAGTCACTTTCTTCT+AGG | - | chr3.4:14741321-14741340 | MS.gene057980:intron | 40.0% |
| !! | ACTTTCTTCTAGGCTGCTTT+TGG | - | chr3.4:14741331-14741350 | MS.gene057980:intron | 40.0% |
| !! | CGAGTTATTGACTCAGATGA+AGG | - | chr3.4:14740874-14740893 | MS.gene057980:intron | 40.0% |
| !! | CTTTATGCCTTTGAGGTTTC+TGG | - | chr3.4:14742794-14742813 | MS.gene057980:CDS | 40.0% |
| !! | GTATCTGGAAGGCATTGATT+TGG | - | chr3.4:14742332-14742351 | MS.gene057980:intron | 40.0% |
| AAACTAAGCAGATGCTGAGC+CGG | - | chr3.4:14742855-14742874 | MS.gene057980:CDS | 45.0% | |
| AGGAAATAGAGCCCATGGAT+AGG | - | chr3.4:14740996-14741015 | MS.gene057980:CDS | 45.0% | |
| CGACGAATGTGTTAAGGAGT+TGG | - | chr3.4:14742698-14742717 | MS.gene057980:CDS | 45.0% | |
| CTTAATTGTCAGGGCGCAAA+AGG | - | chr3.4:14742604-14742623 | MS.gene057980:CDS | 45.0% | |
| CTTGGAAGAAGCCAAAAAGC+AGG | - | chr3.4:14740772-14740791 | MS.gene057980:CDS | 45.0% | |
| GATACATTTCACCTAGCTGC+TGG | + | chr3.4:14741078-14741097 | None:intergenic | 45.0% | |
| GATCCAACATCTTCGCTTGA+TGG | - | chr3.4:14740940-14740959 | MS.gene057980:intron | 45.0% | |
| GGAAATAGAGCCCATGGATA+GGG | - | chr3.4:14740997-14741016 | MS.gene057980:CDS | 45.0% | |
| ! | ATTGCCACTTCCCTATCCAT+GGG | + | chr3.4:14741010-14741029 | None:intergenic | 45.0% |
| ! | TATTGCCACTTCCCTATCCA+TGG | + | chr3.4:14741011-14741030 | None:intergenic | 45.0% |
| ! | TGTGTTAAGGAGTTGGTTCC+AGG | - | chr3.4:14742705-14742724 | MS.gene057980:CDS | 45.0% |
| !!! | GGTTCCACTGACGTTTTTTC+CGG | + | chr3.4:14742877-14742896 | None:intergenic | 45.0% |
| !!! | TCTAGGCTGCTTTTGGTGTT+TGG | - | chr3.4:14741338-14741357 | MS.gene057980:intron | 45.0% |
| AATGGCAAGAGAGCAGCTAG+AGG | - | chr3.4:14740976-14740995 | MS.gene057980:CDS | 50.0% | |
| CGGGAGGAGCCAGATATTTA+GGG | + | chr3.4:14742575-14742594 | None:intergenic | 50.0% | |
| CGTCAGTGGAACCCAGAATA+TGG | - | chr3.4:14742884-14742903 | MS.gene057980:CDS | 50.0% | |
| GCTAGAGGAAATAGAGCCCA+TGG | - | chr3.4:14740991-14741010 | MS.gene057980:CDS | 50.0% | |
| TACTCGTGATTCTCTGCCAC+AGG | - | chr3.4:14742665-14742684 | MS.gene057980:CDS | 50.0% | |
| TAGCTGCTGGTATGCCACAT+CGG | + | chr3.4:14741065-14741084 | None:intergenic | 50.0% | |
| TGAGCCGGAAAAAACGTCAG+TGG | - | chr3.4:14742870-14742889 | MS.gene057980:CDS | 50.0% | |
| TGTGAGAATGAACGAGACGG+TGG | + | chr3.4:14741779-14741798 | None:intergenic | 50.0% | |
| AGAGCCCATGGATAGGGAAG+TGG | - | chr3.4:14741003-14741022 | MS.gene057980:CDS | 55.0% | |
| GATGTGGCATACCAGCAGCT+AGG | - | chr3.4:14741064-14741083 | MS.gene057980:intron | 55.0% | |
| GCGGGAGGAGCCAGATATTT+AGG | + | chr3.4:14742576-14742595 | None:intergenic | 55.0% | |
| GGACGGTATAGCTTCCGATG+TGG | - | chr3.4:14741048-14741067 | MS.gene057980:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 14740752 | 14742919 | 14740752 | ID=MS.gene057980 |
| chr3.4 | mRNA | 14740752 | 14742919 | 14740752 | ID=MS.gene057980.t1;Parent=MS.gene057980 |
| chr3.4 | exon | 14742586 | 14742919 | 14742586 | ID=MS.gene057980.t1.exon1;Parent=MS.gene057980.t1 |
| chr3.4 | CDS | 14742586 | 14742919 | 14742586 | ID=cds.MS.gene057980.t1;Parent=MS.gene057980.t1 |
| chr3.4 | exon | 14742417 | 14742430 | 14742417 | ID=MS.gene057980.t1.exon2;Parent=MS.gene057980.t1 |
| chr3.4 | CDS | 14742417 | 14742430 | 14742417 | ID=cds.MS.gene057980.t1;Parent=MS.gene057980.t1 |
| chr3.4 | exon | 14741595 | 14741727 | 14741595 | ID=MS.gene057980.t1.exon3;Parent=MS.gene057980.t1 |
| chr3.4 | CDS | 14741595 | 14741727 | 14741595 | ID=cds.MS.gene057980.t1;Parent=MS.gene057980.t1 |
| chr3.4 | exon | 14740945 | 14741055 | 14740945 | ID=MS.gene057980.t1.exon4;Parent=MS.gene057980.t1 |
| chr3.4 | CDS | 14740945 | 14741055 | 14740945 | ID=cds.MS.gene057980.t1;Parent=MS.gene057980.t1 |
| chr3.4 | exon | 14740752 | 14740819 | 14740752 | ID=MS.gene057980.t1.exon5;Parent=MS.gene057980.t1 |
| chr3.4 | CDS | 14740752 | 14740819 | 14740752 | ID=cds.MS.gene057980.t1;Parent=MS.gene057980.t1 |
| Gene Sequence |
| Protein sequence |
