Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28494.t1 | XP_003629499.1 | 98.7 | 313 | 4 | 0 | 1 | 313 | 1 | 313 | 4.60E-173 | 617.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28494.t1 | Q9SYY4 | 62.6 | 270 | 96 | 3 | 13 | 279 | 6 | 273 | 5.2e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28494.t1 | G7LFI8 | 98.7 | 313 | 4 | 0 | 1 | 313 | 1 | 313 | 3.3e-173 | 617.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene28494 | -0.802453 | 5.57E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene28494 | 0.839884 | 1.21E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene28494 | 0.819828 | 9.46E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene28494 | 0.80649 | 8.02E-50 | -1.69E-46 |
| MS.gene050553 | MS.gene28494 | 0.81758 | 3.06E-52 | -1.69E-46 |
| MS.gene050697 | MS.gene28494 | 0.80215 | 6.43E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene28494 | 0.815067 | 1.12E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene28494 | 0.861588 | 9.23E-64 | -1.69E-46 |
| MS.gene050871 | MS.gene28494 | 0.863542 | 2.31E-64 | -1.69E-46 |
| MS.gene050875 | MS.gene28494 | -0.832081 | 1.16E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene28494 | 0.801322 | 9.51E-49 | -1.69E-46 |
| MS.gene051268 | MS.gene28494 | 0.810856 | 9.36E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene28494 | 0.824423 | 8.14E-54 | -1.69E-46 |
| MS.gene051941 | MS.gene28494 | 0.816482 | 5.40E-52 | -1.69E-46 |
| MS.gene052100 | MS.gene28494 | 0.841675 | 4.12E-58 | -1.69E-46 |
| MS.gene053479 | MS.gene28494 | 0.842022 | 3.33E-58 | -1.69E-46 |
| MS.gene053480 | MS.gene28494 | 0.809772 | 1.60E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene28494 | 0.805801 | 1.12E-49 | -1.69E-46 |
| MS.gene053889 | MS.gene28494 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene28494 | 0.814814 | 1.27E-51 | -1.69E-46 |
| MS.gene054662 | MS.gene28494 | -0.827006 | 1.98E-54 | -1.69E-46 |
| MS.gene054941 | MS.gene28494 | -0.803603 | 3.22E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene28494 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene28494 | 0.840437 | 8.70E-58 | -1.69E-46 |
| MS.gene056166 | MS.gene28494 | 0.809395 | 1.93E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene28494 | 0.878905 | 1.92E-69 | -1.69E-46 |
| MS.gene056504 | MS.gene28494 | 0.813572 | 2.39E-51 | -1.69E-46 |
| MS.gene056618 | MS.gene28494 | -0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene057367 | MS.gene28494 | -0.806996 | 6.27E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene28494 | 0.823344 | 1.46E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene28494 | 0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene28494 | 0.816581 | 5.14E-52 | -1.69E-46 |
| MS.gene058418 | MS.gene28494 | -0.808153 | 3.56E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene28494 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene28494 | -0.803365 | 3.61E-49 | -1.69E-46 |
| MS.gene05960 | MS.gene28494 | -0.811514 | 6.74E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene28494 | -0.803444 | 3.48E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene28494 | 0.869677 | 2.59E-66 | -1.69E-46 |
| MS.gene06027 | MS.gene28494 | 0.819087 | 1.40E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene28494 | 0.811208 | 7.86E-51 | -1.69E-46 |
| MS.gene06080 | MS.gene28494 | -0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene28494 | 0.81931 | 1.24E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28494.t1 | MTR_8g078200 | 98.722 | 313 | 4 | 0 | 1 | 313 | 1 | 313 | 0.0 | 620 |
| MS.gene28494.t1 | MTR_5g019330 | 62.667 | 300 | 99 | 4 | 13 | 312 | 8 | 294 | 5.32e-127 | 365 |
| MS.gene28494.t1 | MTR_3g111610 | 56.055 | 289 | 123 | 3 | 12 | 299 | 11 | 296 | 1.68e-107 | 315 |
| MS.gene28494.t1 | MTR_1g021915 | 61.500 | 200 | 75 | 2 | 15 | 213 | 8 | 206 | 4.08e-76 | 233 |
| MS.gene28494.t1 | MTR_7g113780 | 33.929 | 280 | 169 | 4 | 16 | 293 | 9 | 274 | 4.85e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28494.t1 | AT4G36830 | 60.351 | 285 | 105 | 4 | 13 | 294 | 6 | 285 | 6.87e-119 | 343 |
| MS.gene28494.t1 | AT1G75000 | 55.944 | 286 | 115 | 4 | 15 | 296 | 3 | 281 | 9.13e-112 | 325 |
| MS.gene28494.t1 | AT4G36830 | 63.137 | 255 | 89 | 3 | 13 | 264 | 6 | 258 | 3.68e-111 | 325 |
| MS.gene28494.t1 | AT3G06470 | 32.394 | 284 | 175 | 7 | 15 | 293 | 7 | 278 | 2.44e-35 | 129 |
| MS.gene28494.t1 | AT3G06460 | 31.461 | 267 | 171 | 4 | 15 | 279 | 7 | 263 | 2.67e-32 | 122 |
Find 99 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTATGGTTATAGATTT+TGG | 0.113077 | 8.4:-28422809 | MS.gene28494:CDS |
| CTTGTTTACTCTCTTGTTTA+TGG | 0.219721 | 8.4:-28422822 | MS.gene28494:CDS |
| CTTCTGGTCGTGTCTTCTTT+TGG | 0.271814 | 8.4:-28423022 | MS.gene28494:CDS |
| GAGCCATCGAAGTGGGGTTT+TGG | 0.273493 | 8.4:+28423070 | None:intergenic |
| GAGGCTGTGGAGGGCGGGGA+TGG | 0.298938 | 8.4:+28423184 | None:intergenic |
| GAGGATGAGGTAGGTGGCTA+TGG | 0.328890 | 8.4:+28423271 | None:intergenic |
| AGGCTGTGGAGGGCGGGGAT+GGG | 0.344199 | 8.4:+28423185 | None:intergenic |
| GTGCCCTTGACCCGGCGATT+AGG | 0.358804 | 8.4:+28422502 | None:intergenic |
| CCCTTAGGTACACGACCTTC+TGG | 0.360013 | 8.4:-28423038 | MS.gene28494:CDS |
| GTTGCAATGGAATGGGTGCT+TGG | 0.364558 | 8.4:-28422662 | MS.gene28494:CDS |
| AACTGTCAGATTCTGTTGTT+GGG | 0.385095 | 8.4:-28422744 | MS.gene28494:CDS |
| TGGCTCCTTTGTTTCCCCTT+AGG | 0.386786 | 8.4:-28423053 | MS.gene28494:CDS |
| CTTGACCCGGCGATTAGGTC+GGG | 0.400972 | 8.4:+28422507 | None:intergenic |
| TTGCAATGGAATGGGTGCTT+GGG | 0.403901 | 8.4:-28422661 | MS.gene28494:CDS |
| GAACTGTCAGATTCTGTTGT+TGG | 0.405377 | 8.4:-28422745 | MS.gene28494:CDS |
| GTTCTGAGAGGTAGTAGATA+AGG | 0.408246 | 8.4:+28423366 | None:intergenic |
| ATGGTGAGGCTGTGGAGGGC+GGG | 0.410769 | 8.4:+28423179 | None:intergenic |
| TCCGTGACACACAATGGTTC+TGG | 0.412013 | 8.4:-28423100 | MS.gene28494:CDS |
| GGAGAGAGAGTGAGAGGTGG+AGG | 0.415211 | 8.4:+28423240 | None:intergenic |
| GTTGGAGCCACAGTCATTCA+TGG | 0.420558 | 8.4:-28423322 | MS.gene28494:CDS |
| TGGTGAGGCTGTGGAGGGCG+GGG | 0.446984 | 8.4:+28423180 | None:intergenic |
| GGAGGAAGAGAGAGAGGATG+AGG | 0.452742 | 8.4:+28423258 | None:intergenic |
| AGGGCGGGGATGGGTCCTAG+AGG | 0.455650 | 8.4:+28423194 | None:intergenic |
| TTCTGAGAGGTAGTAGATAA+GGG | 0.461158 | 8.4:+28423367 | None:intergenic |
| ATCTGACAGTTCAAAACAAA+CGG | 0.465978 | 8.4:+28422756 | None:intergenic |
| TGTGACGGCGGTTGGGAAAG+AGG | 0.468948 | 8.4:+28423219 | None:intergenic |
| TCTTGCCCCGACCTAATCGC+CGG | 0.472510 | 8.4:-28422513 | MS.gene28494:CDS |
| AGAGGGATGTGACGGCGGTT+GGG | 0.473360 | 8.4:+28423212 | None:intergenic |
| TTGGAGCCACAGTCATTCAT+GGG | 0.474230 | 8.4:-28423321 | MS.gene28494:CDS |
| TAGAGGGATGTGACGGCGGT+TGG | 0.477290 | 8.4:+28423211 | None:intergenic |
| AGAGGTGGAGGAAGAGAGAG+AGG | 0.488408 | 8.4:+28423252 | None:intergenic |
| CCTTGACCCGGCGATTAGGT+CGG | 0.490369 | 8.4:+28422506 | None:intergenic |
| AGGGTTCCGATGGTTGTTAA+CGG | 0.491352 | 8.4:+28423386 | None:intergenic |
| ACCAGAAGGTCGTGTACCTA+AGG | 0.492368 | 8.4:+28423037 | None:intergenic |
| CAACGGAATGAGATGATTGA+TGG | 0.494065 | 8.4:+28423341 | None:intergenic |
| AGTTGGTGGTTGCAATGGAA+TGG | 0.496755 | 8.4:-28422670 | MS.gene28494:CDS |
| CCGACCTAATCGCCGGGTCA+AGG | 0.503585 | 8.4:-28422506 | MS.gene28494:CDS |
| CATGGTGAGGCTGTGGAGGG+CGG | 0.504783 | 8.4:+28423178 | None:intergenic |
| GGCGATTAGGTCGGGGCAAG+AGG | 0.511860 | 8.4:+28422515 | None:intergenic |
| GAAGAGAGAGAGGATGAGGT+AGG | 0.518355 | 8.4:+28423262 | None:intergenic |
| AAGAACAGCAGTGTTAAGAA+TGG | 0.519462 | 8.4:+28422629 | None:intergenic |
| AAACCAACGTTGAAACTGAA+TGG | 0.524502 | 8.4:+28422904 | None:intergenic |
| GATGAGGTAGGTGGCTATGG+AGG | 0.529936 | 8.4:+28423274 | None:intergenic |
| TGTGTCACGGATTTCTGATA+CGG | 0.532853 | 8.4:+28423112 | None:intergenic |
| CTTGCCCCGACCTAATCGCC+GGG | 0.536152 | 8.4:-28422512 | MS.gene28494:CDS |
| GAAAGAGGAGAGAGAGTGAG+AGG | 0.541458 | 8.4:+28423234 | None:intergenic |
| AACAAAGGAGCCATCGAAGT+GGG | 0.546861 | 8.4:+28423063 | None:intergenic |
| TCGTGACCGTGCCCTTGACC+CGG | 0.547540 | 8.4:+28422494 | None:intergenic |
| CGACCTAATCGCCGGGTCAA+GGG | 0.547625 | 8.4:-28422505 | MS.gene28494:CDS |
| CATCAATCATCTCATTCCGT+TGG | 0.548440 | 8.4:-28423340 | MS.gene28494:CDS |
| TAACTATTCTACATCGTCGT+AGG | 0.549547 | 8.4:-28422950 | MS.gene28494:CDS |
| TTTGAAGTTGGTGGTTGCAA+TGG | 0.550114 | 8.4:-28422675 | MS.gene28494:CDS |
| GAGAGAGAGGATGAGGTAGG+TGG | 0.552664 | 8.4:+28423265 | None:intergenic |
| AGAGGAGAGAGAGTGAGAGG+TGG | 0.553228 | 8.4:+28423237 | None:intergenic |
| ATGAATGACTGTGGCTCCAA+CGG | 0.554793 | 8.4:+28423324 | None:intergenic |
| TTGACCCGGCGATTAGGTCG+GGG | 0.555642 | 8.4:+28422508 | None:intergenic |
| GGGCGGGGATGGGTCCTAGA+GGG | 0.556122 | 8.4:+28423195 | None:intergenic |
| TGAGAGACATGGTGAGGCTG+TGG | 0.562000 | 8.4:+28423171 | None:intergenic |
| ATCTCCGCCACAATCTTCAC+CGG | 0.563488 | 8.4:-28423149 | MS.gene28494:CDS |
| GTTGGTGGTTGCAATGGAAT+GGG | 0.571392 | 8.4:-28422669 | MS.gene28494:CDS |
| TGGGTCCTAGAGGGATGTGA+CGG | 0.574620 | 8.4:+28423204 | None:intergenic |
| GTCATTCATGGGGTTCAACA+TGG | 0.574769 | 8.4:-28423310 | MS.gene28494:CDS |
| TAATCGCCGGGTCAAGGGCA+CGG | 0.578584 | 8.4:-28422500 | MS.gene28494:CDS |
| CCAGAAGGTCGTGTACCTAA+GGG | 0.582318 | 8.4:+28423038 | None:intergenic |
| GCCAGAACCATTGTGTGTCA+CGG | 0.584140 | 8.4:+28423099 | None:intergenic |
| AGGTGGCTATGGAGGTGATG+AGG | 0.593761 | 8.4:+28423282 | None:intergenic |
| CAAAAGAAGACACGACCAGA+AGG | 0.593853 | 8.4:+28423023 | None:intergenic |
| CAGAAATCCGTGACACACAA+TGG | 0.594801 | 8.4:-28423106 | MS.gene28494:CDS |
| TTGTTGGGAAAAGTGAAAGG+AGG | 0.595675 | 8.4:-28422572 | MS.gene28494:CDS |
| AGACATGGTGAGGCTGTGGA+GGG | 0.595928 | 8.4:+28423175 | None:intergenic |
| TAGTGTACCGGTGAAGATTG+TGG | 0.598160 | 8.4:+28423142 | None:intergenic |
| TCACCACCGTTAACAACCAT+CGG | 0.600715 | 8.4:-28423392 | MS.gene28494:CDS |
| GTCACGGATTTCTGATACGG+CGG | 0.603191 | 8.4:+28423115 | None:intergenic |
| GTAGTAGATAAGGGTTCCGA+TGG | 0.603257 | 8.4:+28423376 | None:intergenic |
| GTTCCAAAACCCCACTTCGA+TGG | 0.603311 | 8.4:-28423073 | MS.gene28494:CDS |
| GTTGTTAACGGTGGTGATGA+CGG | 0.604640 | 8.4:+28423398 | None:intergenic |
| TACGGCGGAGATTAGTGTAC+CGG | 0.612304 | 8.4:+28423130 | None:intergenic |
| TGGGAAAAGTGAAAGGAGGA+TGG | 0.616583 | 8.4:-28422568 | MS.gene28494:CDS |
| AACCGCCGTCACATCCCTCT+AGG | 0.618343 | 8.4:-28423209 | MS.gene28494:CDS |
| GGTTGAAGAGAGTGAATCAA+CGG | 0.620121 | 8.4:-28422547 | MS.gene28494:CDS |
| GAGACATGGTGAGGCTGTGG+AGG | 0.636114 | 8.4:+28423174 | None:intergenic |
| TGATGACGGTGGTTTAGCCA+TGG | 0.641896 | 8.4:+28423412 | None:intergenic |
| AACGGAATGAGATGATTGAT+GGG | 0.648054 | 8.4:+28423342 | None:intergenic |
| TCTGTTGTTGGGTTGTAACG+TGG | 0.655015 | 8.4:-28422733 | MS.gene28494:CDS |
| AAACAAAGGAGCCATCGAAG+TGG | 0.658352 | 8.4:+28423062 | None:intergenic |
| TGATTGATGGGTGTTCTGAG+AGG | 0.661816 | 8.4:+28423354 | None:intergenic |
| CAGAAGGTCGTGTACCTAAG+GGG | 0.661964 | 8.4:+28423039 | None:intergenic |
| GAACCATTCAGTTTCAACGT+TGG | 0.662297 | 8.4:-28422907 | MS.gene28494:CDS |
| TGTAACGTGGCGTGTCACGT+TGG | 0.663382 | 8.4:-28422720 | MS.gene28494:CDS |
| GTTCCGATGGTTGTTAACGG+TGG | 0.665456 | 8.4:+28423389 | None:intergenic |
| TGGAGCCACAGTCATTCATG+GGG | 0.667835 | 8.4:-28423320 | MS.gene28494:CDS |
| ACAAAGGAGCCATCGAAGTG+GGG | 0.669067 | 8.4:+28423064 | None:intergenic |
| GTCCTAGAGGGATGTGACGG+CGG | 0.675692 | 8.4:+28423207 | None:intergenic |
| GTGTACCTAAGGGGAAACAA+AGG | 0.693808 | 8.4:+28423048 | None:intergenic |
| CGGAGATGAGAGACATGGTG+AGG | 0.705291 | 8.4:+28423165 | None:intergenic |
| GTTAACGGTGGTGATGACGG+TGG | 0.714126 | 8.4:+28423401 | None:intergenic |
| TTGAACCCCATGAATGACTG+TGG | 0.737119 | 8.4:+28423315 | None:intergenic |
| TGTACCGGTGAAGATTGTGG+CGG | 0.746298 | 8.4:+28423145 | None:intergenic |
| TGTGGCGGAGATGAGAGACA+TGG | 0.780597 | 8.4:+28423160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTCATTTTTATGTG+AGG | - | chr8.4:28423299-28423318 | MS.gene28494:CDS | 15.0% |
| !!! | TTGTTTATGGTTATAGATTT+TGG | - | chr8.4:28423092-28423111 | MS.gene28494:CDS | 20.0% |
| !!! | CTTCATTTCTTTTTTGAAGT+TGG | - | chr8.4:28423214-28423233 | MS.gene28494:CDS | 25.0% |
| ATCTGACAGTTCAAAACAAA+CGG | + | chr8.4:28423148-28423167 | None:intergenic | 30.0% | |
| ! | ATGTGAGGATGTATTTTGTT+GGG | - | chr8.4:28423314-28423333 | MS.gene28494:CDS | 30.0% |
| ! | ATTTTGTTGGGAAAAGTGAA+AGG | - | chr8.4:28423326-28423345 | MS.gene28494:CDS | 30.0% |
| ! | CTTGTTTACTCTCTTGTTTA+TGG | - | chr8.4:28423079-28423098 | MS.gene28494:CDS | 30.0% |
| ! | TATAGATTTTGGACAGCTAT+TGG | - | chr8.4:28423103-28423122 | MS.gene28494:CDS | 30.0% |
| ! | TATGTGAGGATGTATTTTGT+TGG | - | chr8.4:28423313-28423332 | MS.gene28494:CDS | 30.0% |
| !!! | CATTTCTTTTTTGAAGTTGG+TGG | - | chr8.4:28423217-28423236 | MS.gene28494:CDS | 30.0% |
| AAACCAACGTTGAAACTGAA+TGG | + | chr8.4:28423000-28423019 | None:intergenic | 35.0% | |
| AACGGAATGAGATGATTGAT+GGG | + | chr8.4:28422562-28422581 | None:intergenic | 35.0% | |
| AACTGTCAGATTCTGTTGTT+GGG | - | chr8.4:28423157-28423176 | MS.gene28494:CDS | 35.0% | |
| AAGAACAGCAGTGTTAAGAA+TGG | + | chr8.4:28423275-28423294 | None:intergenic | 35.0% | |
| TAACTATTCTACATCGTCGT+AGG | - | chr8.4:28422951-28422970 | MS.gene28494:CDS | 35.0% | |
| ! | TTCTGAGAGGTAGTAGATAA+GGG | + | chr8.4:28422537-28422556 | None:intergenic | 35.0% |
| !!! | CAACGTTGGTTTCTTTTCTA+TGG | - | chr8.4:28423008-28423027 | MS.gene28494:CDS | 35.0% |
| CAACGGAATGAGATGATTGA+TGG | + | chr8.4:28422563-28422582 | None:intergenic | 40.0% | |
| CATCAATCATCTCATTCCGT+TGG | - | chr8.4:28422561-28422580 | MS.gene28494:CDS | 40.0% | |
| GAACCATTCAGTTTCAACGT+TGG | - | chr8.4:28422994-28423013 | MS.gene28494:CDS | 40.0% | |
| GAACTGTCAGATTCTGTTGT+TGG | - | chr8.4:28423156-28423175 | MS.gene28494:CDS | 40.0% | |
| GGTTGAAGAGAGTGAATCAA+CGG | - | chr8.4:28423354-28423373 | MS.gene28494:CDS | 40.0% | |
| TGTGTCACGGATTTCTGATA+CGG | + | chr8.4:28422792-28422811 | None:intergenic | 40.0% | |
| TTGTTGGGAAAAGTGAAAGG+AGG | - | chr8.4:28423329-28423348 | MS.gene28494:CDS | 40.0% | |
| !! | GTTCTGAGAGGTAGTAGATA+AGG | + | chr8.4:28422538-28422557 | None:intergenic | 40.0% |
| !! | TTTGAAGTTGGTGGTTGCAA+TGG | - | chr8.4:28423226-28423245 | MS.gene28494:CDS | 40.0% |
| AAACAAAGGAGCCATCGAAG+TGG | + | chr8.4:28422842-28422861 | None:intergenic | 45.0% | |
| AACAAAGGAGCCATCGAAGT+GGG | + | chr8.4:28422841-28422860 | None:intergenic | 45.0% | |
| AGGGTTCCGATGGTTGTTAA+CGG | + | chr8.4:28422518-28422537 | None:intergenic | 45.0% | |
| ATGAATGACTGTGGCTCCAA+CGG | + | chr8.4:28422580-28422599 | None:intergenic | 45.0% | |
| CAAAAGAAGACACGACCAGA+AGG | + | chr8.4:28422881-28422900 | None:intergenic | 45.0% | |
| CAGAAATCCGTGACACACAA+TGG | - | chr8.4:28422795-28422814 | MS.gene28494:CDS | 45.0% | |
| GTAGTAGATAAGGGTTCCGA+TGG | + | chr8.4:28422528-28422547 | None:intergenic | 45.0% | |
| GTCATTCATGGGGTTCAACA+TGG | - | chr8.4:28422591-28422610 | MS.gene28494:CDS | 45.0% | |
| GTGTACCTAAGGGGAAACAA+AGG | + | chr8.4:28422856-28422875 | None:intergenic | 45.0% | |
| TCACCACCGTTAACAACCAT+CGG | - | chr8.4:28422509-28422528 | MS.gene28494:CDS | 45.0% | |
| TGGGAAAAGTGAAAGGAGGA+TGG | - | chr8.4:28423333-28423352 | MS.gene28494:CDS | 45.0% | |
| TTGAACCCCATGAATGACTG+TGG | + | chr8.4:28422589-28422608 | None:intergenic | 45.0% | |
| TTGCAATGGAATGGGTGCTT+GGG | - | chr8.4:28423240-28423259 | MS.gene28494:CDS | 45.0% | |
| TTGGAGCCACAGTCATTCAT+GGG | - | chr8.4:28422580-28422599 | MS.gene28494:CDS | 45.0% | |
| ! | CTTCTGGTCGTGTCTTCTTT+TGG | - | chr8.4:28422879-28422898 | MS.gene28494:CDS | 45.0% |
| ! | GTTGTTAACGGTGGTGATGA+CGG | + | chr8.4:28422506-28422525 | None:intergenic | 45.0% |
| ! | TAGTGTACCGGTGAAGATTG+TGG | + | chr8.4:28422762-28422781 | None:intergenic | 45.0% |
| ! | TCTGTTGTTGGGTTGTAACG+TGG | - | chr8.4:28423168-28423187 | MS.gene28494:CDS | 45.0% |
| ! | TGATTGATGGGTGTTCTGAG+AGG | + | chr8.4:28422550-28422569 | None:intergenic | 45.0% |
| !! | AGTTGGTGGTTGCAATGGAA+TGG | - | chr8.4:28423231-28423250 | MS.gene28494:CDS | 45.0% |
| !! | GTTGGTGGTTGCAATGGAAT+GGG | - | chr8.4:28423232-28423251 | MS.gene28494:CDS | 45.0% |
| ACAAAGGAGCCATCGAAGTG+GGG | + | chr8.4:28422840-28422859 | None:intergenic | 50.0% | |
| ACCAGAAGGTCGTGTACCTA+AGG | + | chr8.4:28422867-28422886 | None:intergenic | 50.0% | |
| ATCTCCGCCACAATCTTCAC+CGG | - | chr8.4:28422752-28422771 | MS.gene28494:CDS | 50.0% | |
| CAGAAGGTCGTGTACCTAAG+GGG | + | chr8.4:28422865-28422884 | None:intergenic | 50.0% | |
| CCAGAAGGTCGTGTACCTAA+GGG | + | chr8.4:28422866-28422885 | None:intergenic | 50.0% | |
| GAAAGAGGAGAGAGAGTGAG+AGG | + | chr8.4:28422670-28422689 | None:intergenic | 50.0% | |
| GAAGAGAGAGAGGATGAGGT+AGG | + | chr8.4:28422642-28422661 | None:intergenic | 50.0% | |
| GCCAGAACCATTGTGTGTCA+CGG | + | chr8.4:28422805-28422824 | None:intergenic | 50.0% | |
| GTCACGGATTTCTGATACGG+CGG | + | chr8.4:28422789-28422808 | None:intergenic | 50.0% | |
| GTTCCAAAACCCCACTTCGA+TGG | - | chr8.4:28422828-28422847 | MS.gene28494:CDS | 50.0% | |
| GTTCCGATGGTTGTTAACGG+TGG | + | chr8.4:28422515-28422534 | None:intergenic | 50.0% | |
| GTTGCAATGGAATGGGTGCT+TGG | - | chr8.4:28423239-28423258 | MS.gene28494:CDS | 50.0% | |
| GTTGGAGCCACAGTCATTCA+TGG | - | chr8.4:28422579-28422598 | MS.gene28494:CDS | 50.0% | |
| TACGGCGGAGATTAGTGTAC+CGG | + | chr8.4:28422774-28422793 | None:intergenic | 50.0% | |
| TCCGTGACACACAATGGTTC+TGG | - | chr8.4:28422801-28422820 | MS.gene28494:CDS | 50.0% | |
| TGGAGCCACAGTCATTCATG+GGG | - | chr8.4:28422581-28422600 | MS.gene28494:CDS | 50.0% | |
| ! | TGGCTCCTTTGTTTCCCCTT+AGG | - | chr8.4:28422848-28422867 | MS.gene28494:CDS | 50.0% |
| ! | TGTACCGGTGAAGATTGTGG+CGG | + | chr8.4:28422759-28422778 | None:intergenic | 50.0% |
| AGACATGGTGAGGCTGTGGA+GGG | + | chr8.4:28422729-28422748 | None:intergenic | 55.0% | |
| AGAGGAGAGAGAGTGAGAGG+TGG | + | chr8.4:28422667-28422686 | None:intergenic | 55.0% | |
| AGAGGTGGAGGAAGAGAGAG+AGG | + | chr8.4:28422652-28422671 | None:intergenic | 55.0% | |
| AGGTGGCTATGGAGGTGATG+AGG | + | chr8.4:28422622-28422641 | None:intergenic | 55.0% | |
| CCCTTAGGTACACGACCTTC+TGG | - | chr8.4:28422863-28422882 | MS.gene28494:CDS | 55.0% | |
| CGGAGATGAGAGACATGGTG+AGG | + | chr8.4:28422739-28422758 | None:intergenic | 55.0% | |
| GAGAGAGAGGATGAGGTAGG+TGG | + | chr8.4:28422639-28422658 | None:intergenic | 55.0% | |
| GAGGATGAGGTAGGTGGCTA+TGG | + | chr8.4:28422633-28422652 | None:intergenic | 55.0% | |
| GATGAGGTAGGTGGCTATGG+AGG | + | chr8.4:28422630-28422649 | None:intergenic | 55.0% | |
| GGAGGAAGAGAGAGAGGATG+AGG | + | chr8.4:28422646-28422665 | None:intergenic | 55.0% | |
| TGAGAGACATGGTGAGGCTG+TGG | + | chr8.4:28422733-28422752 | None:intergenic | 55.0% | |
| TGGGTCCTAGAGGGATGTGA+CGG | + | chr8.4:28422700-28422719 | None:intergenic | 55.0% | |
| TGTAACGTGGCGTGTCACGT+TGG | - | chr8.4:28423181-28423200 | MS.gene28494:CDS | 55.0% | |
| ! | GAGCCATCGAAGTGGGGTTT+TGG | + | chr8.4:28422834-28422853 | None:intergenic | 55.0% |
| ! | TGTGGCGGAGATGAGAGACA+TGG | + | chr8.4:28422744-28422763 | None:intergenic | 55.0% |
| !! | GTTAACGGTGGTGATGACGG+TGG | + | chr8.4:28422503-28422522 | None:intergenic | 55.0% |
| AACCGCCGTCACATCCCTCT+AGG | - | chr8.4:28422692-28422711 | MS.gene28494:CDS | 60.0% | |
| AGAGGGATGTGACGGCGGTT+GGG | + | chr8.4:28422692-28422711 | None:intergenic | 60.0% | |
| CCTTGACCCGGCGATTAGGT+CGG | + | chr8.4:28423398-28423417 | None:intergenic | 60.0% | |
| CGACCTAATCGCCGGGTCAA+GGG | - | chr8.4:28423396-28423415 | MS.gene28494:CDS | 60.0% | |
| CTTGACCCGGCGATTAGGTC+GGG | + | chr8.4:28423397-28423416 | None:intergenic | 60.0% | |
| GAGACATGGTGAGGCTGTGG+AGG | + | chr8.4:28422730-28422749 | None:intergenic | 60.0% | |
| GGAGAGAGAGTGAGAGGTGG+AGG | + | chr8.4:28422664-28422683 | None:intergenic | 60.0% | |
| GTCCTAGAGGGATGTGACGG+CGG | + | chr8.4:28422697-28422716 | None:intergenic | 60.0% | |
| TAATCGCCGGGTCAAGGGCA+CGG | - | chr8.4:28423401-28423420 | MS.gene28494:CDS | 60.0% | |
| TAGAGGGATGTGACGGCGGT+TGG | + | chr8.4:28422693-28422712 | None:intergenic | 60.0% | |
| TCTTGCCCCGACCTAATCGC+CGG | - | chr8.4:28423388-28423407 | MS.gene28494:CDS | 60.0% | |
| TGTGACGGCGGTTGGGAAAG+AGG | + | chr8.4:28422685-28422704 | None:intergenic | 60.0% | |
| TTGACCCGGCGATTAGGTCG+GGG | + | chr8.4:28423396-28423415 | None:intergenic | 60.0% | |
| ATGGTGAGGCTGTGGAGGGC+GGG | + | chr8.4:28422725-28422744 | None:intergenic | 65.0% | |
| CATGGTGAGGCTGTGGAGGG+CGG | + | chr8.4:28422726-28422745 | None:intergenic | 65.0% | |
| CCGACCTAATCGCCGGGTCA+AGG | - | chr8.4:28423395-28423414 | MS.gene28494:CDS | 65.0% | |
| CTTGCCCCGACCTAATCGCC+GGG | - | chr8.4:28423389-28423408 | MS.gene28494:CDS | 65.0% | |
| GGCGATTAGGTCGGGGCAAG+AGG | + | chr8.4:28423389-28423408 | None:intergenic | 65.0% | |
| GTGCCCTTGACCCGGCGATT+AGG | + | chr8.4:28423402-28423421 | None:intergenic | 65.0% | |
| TCGTGACCGTGCCCTTGACC+CGG | + | chr8.4:28423410-28423429 | None:intergenic | 65.0% | |
| AGGCTGTGGAGGGCGGGGAT+GGG | + | chr8.4:28422719-28422738 | None:intergenic | 70.0% | |
| AGGGCGGGGATGGGTCCTAG+AGG | + | chr8.4:28422710-28422729 | None:intergenic | 70.0% | |
| GGGCGGGGATGGGTCCTAGA+GGG | + | chr8.4:28422709-28422728 | None:intergenic | 70.0% | |
| TGGTGAGGCTGTGGAGGGCG+GGG | + | chr8.4:28422724-28422743 | None:intergenic | 70.0% | |
| GAGGCTGTGGAGGGCGGGGA+TGG | + | chr8.4:28422720-28422739 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 28422491 | 28423432 | 28422491 | ID=MS.gene28494 |
| chr8.4 | mRNA | 28422491 | 28423432 | 28422491 | ID=MS.gene28494.t1;Parent=MS.gene28494 |
| chr8.4 | exon | 28422491 | 28423432 | 28422491 | ID=MS.gene28494.t1.exon1;Parent=MS.gene28494.t1 |
| chr8.4 | CDS | 28422491 | 28423432 | 28422491 | ID=cds.MS.gene28494.t1;Parent=MS.gene28494.t1 |
| Gene Sequence |
| Protein sequence |
