Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28629.t1 | XP_003626077.1 | 97.1 | 277 | 7 | 1 | 1 | 276 | 1 | 277 | 8.70E-160 | 572.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28629.t1 | Q5NB11 | 70.7 | 242 | 71 | 0 | 35 | 276 | 49 | 290 | 6.0e-109 | 395.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28629.t1 | G7KUN3 | 97.1 | 277 | 7 | 1 | 1 | 276 | 1 | 277 | 6.3e-160 | 572.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene28629 | -0.808995 | 2.36E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene28629 | -0.817992 | 2.47E-52 | -1.69E-46 |
| MS.gene049402 | MS.gene28629 | 0.815657 | 8.26E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene28629 | -0.828076 | 1.10E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene28629 | -0.831958 | 1.24E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene28629 | -0.822495 | 2.30E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene28629 | -0.82668 | 2.38E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene28629 | -0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene050832 | MS.gene28629 | 0.963854 | 1.35E-122 | -1.69E-46 |
| MS.gene050833 | MS.gene28629 | 0.992121 | 2.00E-191 | -1.69E-46 |
| MS.gene050883 | MS.gene28629 | 0.80478 | 1.83E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene28629 | -0.811374 | 7.23E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene28629 | -0.821338 | 4.26E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene28629 | 0.811527 | 6.70E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene28629 | -0.825399 | 4.79E-54 | -1.69E-46 |
| MS.gene055751 | MS.gene28629 | -0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene055956 | MS.gene28629 | 0.82332 | 1.48E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene28629 | -0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene28629 | -0.820794 | 5.68E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene28629 | 0.823566 | 1.29E-53 | -1.69E-46 |
| MS.gene057246 | MS.gene28629 | -0.803618 | 3.20E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene28629 | -0.810531 | 1.10E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene28629 | -0.819654 | 1.04E-52 | -1.69E-46 |
| MS.gene059479 | MS.gene28629 | 0.814468 | 1.52E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene28629 | -0.819329 | 1.23E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene28629 | -0.803687 | 3.10E-49 | -1.69E-46 |
| MS.gene060823 | MS.gene28629 | 0.807201 | 5.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28629.t1 | MTR_7g110780 | 97.112 | 277 | 7 | 1 | 1 | 276 | 1 | 277 | 0.0 | 557 |
| MS.gene28629.t1 | MTR_3g118390 | 54.959 | 242 | 108 | 1 | 35 | 276 | 126 | 366 | 3.00e-98 | 293 |
| MS.gene28629.t1 | MTR_8g074350 | 54.132 | 242 | 109 | 1 | 35 | 276 | 80 | 319 | 2.21e-95 | 283 |
| MS.gene28629.t1 | MTR_8g074330 | 50.826 | 242 | 117 | 1 | 35 | 276 | 80 | 319 | 8.69e-90 | 269 |
| MS.gene28629.t1 | MTR_8g074335 | 50.826 | 242 | 104 | 1 | 35 | 276 | 82 | 308 | 1.75e-86 | 260 |
| MS.gene28629.t1 | MTR_7g021640 | 38.735 | 253 | 146 | 4 | 33 | 276 | 58 | 310 | 4.97e-53 | 175 |
| MS.gene28629.t1 | MTR_2g034680 | 38.889 | 252 | 144 | 6 | 35 | 276 | 56 | 307 | 4.01e-52 | 173 |
| MS.gene28629.t1 | MTR_2g099470 | 38.397 | 237 | 110 | 6 | 35 | 270 | 81 | 282 | 4.65e-52 | 171 |
| MS.gene28629.t1 | MTR_1g105535 | 38.034 | 234 | 141 | 3 | 33 | 262 | 61 | 294 | 5.10e-50 | 167 |
| MS.gene28629.t1 | MTR_2g099465 | 37.238 | 239 | 115 | 6 | 33 | 270 | 50 | 254 | 9.50e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28629.t1 | AT4G01700 | 69.549 | 266 | 81 | 0 | 11 | 276 | 14 | 279 | 5.38e-146 | 410 |
| MS.gene28629.t1 | AT1G02360 | 72.314 | 242 | 67 | 0 | 35 | 276 | 30 | 271 | 6.52e-140 | 395 |
| MS.gene28629.t1 | AT1G02360 | 67.279 | 272 | 77 | 2 | 9 | 276 | 60 | 323 | 6.88e-140 | 397 |
| MS.gene28629.t1 | AT1G02360 | 67.279 | 272 | 77 | 2 | 9 | 276 | 54 | 317 | 8.01e-140 | 396 |
| MS.gene28629.t1 | AT3G12500 | 58.264 | 242 | 100 | 1 | 35 | 276 | 86 | 326 | 2.09e-106 | 312 |
| MS.gene28629.t1 | AT3G16920 | 39.286 | 252 | 143 | 7 | 35 | 276 | 68 | 319 | 4.03e-52 | 173 |
| MS.gene28629.t1 | AT3G16920 | 39.286 | 252 | 143 | 7 | 35 | 276 | 92 | 343 | 6.62e-52 | 173 |
| MS.gene28629.t1 | AT1G05850 | 37.450 | 251 | 148 | 5 | 35 | 276 | 60 | 310 | 1.95e-51 | 171 |
| MS.gene28629.t1 | AT1G05850 | 37.450 | 251 | 148 | 5 | 35 | 276 | 60 | 310 | 1.95e-51 | 171 |
| MS.gene28629.t1 | AT3G54420 | 36.820 | 239 | 115 | 5 | 33 | 270 | 70 | 273 | 3.36e-49 | 164 |
| MS.gene28629.t1 | AT2G43590 | 37.131 | 237 | 108 | 7 | 35 | 270 | 68 | 264 | 1.12e-48 | 162 |
| MS.gene28629.t1 | AT2G43610 | 37.500 | 240 | 108 | 7 | 31 | 270 | 84 | 281 | 2.56e-42 | 146 |
| MS.gene28629.t1 | AT2G43580 | 34.599 | 237 | 114 | 7 | 35 | 270 | 69 | 265 | 8.69e-42 | 144 |
| MS.gene28629.t1 | AT2G43570 | 34.413 | 247 | 117 | 6 | 29 | 270 | 71 | 277 | 5.09e-41 | 143 |
| MS.gene28629.t1 | AT2G43620 | 35.833 | 240 | 112 | 7 | 31 | 270 | 86 | 283 | 1.93e-40 | 142 |
| MS.gene28629.t1 | AT1G56680 | 34.156 | 243 | 115 | 9 | 31 | 270 | 80 | 280 | 2.02e-30 | 115 |
| MS.gene28629.t1 | AT1G56680 | 34.156 | 243 | 115 | 9 | 31 | 270 | 103 | 303 | 4.89e-30 | 115 |
| MS.gene28629.t1 | AT2G43600 | 34.440 | 241 | 114 | 10 | 31 | 270 | 76 | 273 | 2.80e-28 | 109 |
| MS.gene28629.t1 | AT2G43600 | 34.440 | 241 | 114 | 10 | 31 | 270 | 97 | 294 | 4.34e-28 | 109 |
| MS.gene28629.t1 | AT3G47540 | 28.992 | 238 | 114 | 9 | 35 | 270 | 30 | 214 | 9.89e-27 | 103 |
| MS.gene28629.t1 | AT3G47540 | 28.139 | 231 | 111 | 9 | 35 | 263 | 30 | 207 | 1.05e-22 | 95.1 |
Find 66 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATACTGGACCTAATT+TGG | 0.146711 | 7.2:-4739751 | MS.gene28629:CDS |
| CTTTCCTCCTCTGCATCTTT+AGG | 0.179427 | 7.2:-4741142 | MS.gene28629:CDS |
| AGAGAAGAGATTGGTATAAT+AGG | 0.189791 | 7.2:+4741097 | None:intergenic |
| ACCAAATTGAGGAAAATATT+TGG | 0.190558 | 7.2:+4740976 | None:intergenic |
| AGCAATAAAGCAAAATAATA+TGG | 0.234582 | 7.2:+4741165 | None:intergenic |
| TTAGGAGTTGAATCATTTAT+TGG | 0.247252 | 7.2:-4741124 | MS.gene28629:CDS |
| TGTGATGGTTGGAAAATATT+TGG | 0.256663 | 7.2:-4739922 | MS.gene28629:CDS |
| TCAAAACTGCTCTATGGTTT+TGG | 0.260706 | 7.2:-4739980 | MS.gene28629:CDS |
| GCTAATCGCACAGCTGGTTT+TGG | 0.280719 | 7.2:-4739879 | MS.gene28629:CDS |
| TGATATGCACAATCCAAATT+AGG | 0.305058 | 7.2:+4739738 | None:intergenic |
| TTGTGTAGGAATTATAACTA+TGG | 0.344973 | 7.2:-4740077 | MS.gene28629:intron |
| TAGGAGTTGAATCATTTATT+GGG | 0.345727 | 7.2:-4741123 | MS.gene28629:CDS |
| AAAGATTGGCCTTGCTTTGA+AGG | 0.347412 | 7.2:-4740785 | MS.gene28629:CDS |
| GAGAAGAGATTGGTATAATA+GGG | 0.356153 | 7.2:+4741098 | None:intergenic |
| TTGCTTTCAAAACTGCTCTA+TGG | 0.359827 | 7.2:-4739986 | MS.gene28629:CDS |
| AAGCATAAGCCCCAAGAAAA+TGG | 0.365932 | 7.2:+4740854 | None:intergenic |
| GCAAGAGTTAATGATCGAAT+TGG | 0.385700 | 7.2:-4739804 | MS.gene28629:CDS |
| AAGTTGTTCAATGTGGATAC+TGG | 0.403395 | 7.2:-4739762 | MS.gene28629:CDS |
| GAATTGTTTGATACAATCTC+TGG | 0.409450 | 7.2:+4740014 | None:intergenic |
| TTTCCTCAATTTGGTACTAC+AGG | 0.418672 | 7.2:-4740968 | MS.gene28629:CDS |
| GGGAAGGCGTTAGGATTTGA+TGG | 0.420884 | 7.2:-4740047 | MS.gene28629:CDS |
| CCCCAAGAAAATGGTCCATC+AGG | 0.433362 | 7.2:+4740863 | None:intergenic |
| GCAATAAAGCAAAATAATAT+GGG | 0.436056 | 7.2:+4741166 | None:intergenic |
| GTATACCAAGATAGTTGAAT+AGG | 0.440524 | 7.2:+4740740 | None:intergenic |
| TCATTAACTCTTGCATCATC+AGG | 0.440723 | 7.2:+4739813 | None:intergenic |
| GTAGGAATATTGTGTCATAA+AGG | 0.444283 | 7.2:+4741062 | None:intergenic |
| GAGGTCCTATTCAACTATCT+TGG | 0.447585 | 7.2:-4740745 | MS.gene28629:intron |
| GGGTGGGCCACTGCACCTGA+TGG | 0.450425 | 7.2:-4740878 | MS.gene28629:CDS |
| TTACTTATTAGAGAAGAGAT+TGG | 0.451038 | 7.2:+4741088 | None:intergenic |
| TGGAAGCTTCAATGAAGGAT+TGG | 0.458638 | 7.2:+4740996 | None:intergenic |
| GAATCACAGTAGTTACTTTG+AGG | 0.463755 | 7.2:+4740815 | None:intergenic |
| GGACCAGCAGGGAAGGCGTT+AGG | 0.472444 | 7.2:-4740056 | MS.gene28629:CDS |
| AAATATAGTCAATGGTGGAT+TGG | 0.476185 | 7.2:-4739847 | MS.gene28629:CDS |
| AATTATAACTATGGACCAGC+AGG | 0.477533 | 7.2:-4740068 | MS.gene28629:CDS |
| AATCCTAACGCCTTCCCTGC+TGG | 0.489708 | 7.2:+4740053 | None:intergenic |
| ACATTGTGACAAGAAGGTAT+TGG | 0.494924 | 7.2:+4739942 | None:intergenic |
| GTGATTCTACTGACAAAGAT+TGG | 0.496296 | 7.2:-4740799 | MS.gene28629:CDS |
| ATATTTGGAAGCTTCAATGA+AGG | 0.511487 | 7.2:+4740991 | None:intergenic |
| GCTTCAATGAAGGATTGGTA+AGG | 0.525028 | 7.2:+4741001 | None:intergenic |
| CAGATTTCACATGAAACTAC+TGG | 0.531637 | 7.2:-4740902 | MS.gene28629:CDS |
| ATAGAAGCTAATCGCACAGC+TGG | 0.541134 | 7.2:-4739885 | MS.gene28629:CDS |
| AGCTATCTCACGCTTTCTTG+TGG | 0.548914 | 7.2:+4740937 | None:intergenic |
| GGCAAAAGTTACAAAGGAAG+AGG | 0.557753 | 7.2:-4740764 | MS.gene28629:CDS |
| ACCATCACATTGTGACAAGA+AGG | 0.564779 | 7.2:+4739936 | None:intergenic |
| ACATGAAACTACTGGTGGGT+GGG | 0.569584 | 7.2:-4740894 | MS.gene28629:CDS |
| AACTCCTAAAGATGCAGAGG+AGG | 0.579707 | 7.2:+4741138 | None:intergenic |
| GGAAGGCGTTAGGATTTGAT+GGG | 0.584389 | 7.2:-4740046 | MS.gene28629:CDS |
| CAACCTGTAGTACCAAATTG+AGG | 0.584601 | 7.2:+4740965 | None:intergenic |
| GTCAATGGTGGATTGGAATG+TGG | 0.588138 | 7.2:-4739840 | MS.gene28629:CDS |
| CAATAAAGCAAAATAATATG+GGG | 0.588254 | 7.2:+4741167 | None:intergenic |
| TTTGAAGGCAAAAGTTACAA+AGG | 0.591242 | 7.2:-4740770 | MS.gene28629:CDS |
| TCTTGTCACAATGTGATGGT+TGG | 0.593829 | 7.2:-4739933 | MS.gene28629:CDS |
| ATGCAGTGTCATCTTTGTGT+AGG | 0.594953 | 7.2:+4741044 | None:intergenic |
| CACATGAAACTACTGGTGGG+TGG | 0.597128 | 7.2:-4740895 | MS.gene28629:CDS |
| TAACTATGGACCAGCAGGGA+AGG | 0.603344 | 7.2:-4740063 | MS.gene28629:CDS |
| CTTCAATGAAGGATTGGTAA+GGG | 0.607116 | 7.2:+4741002 | None:intergenic |
| AAATGGTCCATCAGGTGCAG+TGG | 0.617726 | 7.2:+4740871 | None:intergenic |
| GTGACAAATATAGTCAATGG+TGG | 0.618848 | 7.2:-4739852 | MS.gene28629:CDS |
| TTGGTGACAAATATAGTCAA+TGG | 0.622222 | 7.2:-4739855 | MS.gene28629:CDS |
| TTCAACTCCTAAAGATGCAG+AGG | 0.624622 | 7.2:+4741135 | None:intergenic |
| ACCTTCTTGTCACAATGTGA+TGG | 0.640940 | 7.2:-4739937 | MS.gene28629:CDS |
| ATTTCACATGAAACTACTGG+TGG | 0.650794 | 7.2:-4740899 | MS.gene28629:CDS |
| AATAAAGCAAAATAATATGG+GGG | 0.669386 | 7.2:+4741168 | None:intergenic |
| ATTATAACTATGGACCAGCA+GGG | 0.676909 | 7.2:-4740067 | MS.gene28629:CDS |
| ATATACTAAGTTGTTCAATG+TGG | 0.678623 | 7.2:-4739769 | MS.gene28629:CDS |
| TTTCACATGAAACTACTGGT+GGG | 0.698219 | 7.2:-4740898 | MS.gene28629:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAACAAAAAAAAAAAAAAA+AGG | - | chr7.2:4740600-4740619 | MS.gene28629:intron | 10.0% |
| !! | ATACGAAATAATTACTAAAT+CGG | + | chr7.2:4740426-4740445 | None:intergenic | 15.0% |
| !! | AATAAAGCAAAATAATATGG+GGG | + | chr7.2:4739747-4739766 | None:intergenic | 20.0% |
| !! | AGCAATAAAGCAAAATAATA+TGG | + | chr7.2:4739750-4739769 | None:intergenic | 20.0% |
| !! | CAATAAAGCAAAATAATATG+GGG | + | chr7.2:4739748-4739767 | None:intergenic | 20.0% |
| !! | GCAATAAAGCAAAATAATAT+GGG | + | chr7.2:4739749-4739768 | None:intergenic | 20.0% |
| !! | TACGAAATAATTACTAAATC+GGG | + | chr7.2:4740425-4740444 | None:intergenic | 20.0% |
| !! | TGATTAAGTATAATATGGTT+GGG | + | chr7.2:4740661-4740680 | None:intergenic | 20.0% |
| !! | TTGATTAAGTATAATATGGT+TGG | + | chr7.2:4740662-4740681 | None:intergenic | 20.0% |
| ! | ACCAAATTGAGGAAAATATT+TGG | + | chr7.2:4739939-4739958 | None:intergenic | 25.0% |
| ! | ATATACTAAGTTGTTCAATG+TGG | - | chr7.2:4741143-4741162 | MS.gene28629:CDS | 25.0% |
| ! | TAGGAGTTGAATCATTTATT+GGG | - | chr7.2:4739789-4739808 | MS.gene28629:CDS | 25.0% |
| ! | TCGCTTGATTAAGTATAATA+TGG | + | chr7.2:4740666-4740685 | None:intergenic | 25.0% |
| ! | TTACTTATTAGAGAAGAGAT+TGG | + | chr7.2:4739827-4739846 | None:intergenic | 25.0% |
| ! | TTAGGAGTTGAATCATTTAT+TGG | - | chr7.2:4739788-4739807 | MS.gene28629:CDS | 25.0% |
| ! | TTGTGTAGGAATTATAACTA+TGG | - | chr7.2:4740835-4740854 | MS.gene28629:CDS | 25.0% |
| !! | TCCAAATATTTTCCTCAATT+TGG | - | chr7.2:4739935-4739954 | MS.gene28629:CDS | 25.0% |
| !!! | CATAGAAACAATTTTAGGTT+TGG | + | chr7.2:4740278-4740297 | None:intergenic | 25.0% |
| AGAGAAGAGATTGGTATAAT+AGG | + | chr7.2:4739818-4739837 | None:intergenic | 30.0% | |
| AGCTAATGAGTTTCAGTTAA+AGG | - | chr7.2:4740698-4740717 | MS.gene28629:intron | 30.0% | |
| ATATTTGGAAGCTTCAATGA+AGG | + | chr7.2:4739924-4739943 | None:intergenic | 30.0% | |
| CTACACAAAAGTTTATGAGA+GGG | + | chr7.2:4740823-4740842 | None:intergenic | 30.0% | |
| GAATTGTTTGATACAATCTC+TGG | + | chr7.2:4740901-4740920 | None:intergenic | 30.0% | |
| GAGAAGAGATTGGTATAATA+GGG | + | chr7.2:4739817-4739836 | None:intergenic | 30.0% | |
| GTAGGAATATTGTGTCATAA+AGG | + | chr7.2:4739853-4739872 | None:intergenic | 30.0% | |
| GTATACCAAGATAGTTGAAT+AGG | + | chr7.2:4740175-4740194 | None:intergenic | 30.0% | |
| TACACAAAAGTTTATGAGAG+GGG | + | chr7.2:4740822-4740841 | None:intergenic | 30.0% | |
| TGATATGCACAATCCAAATT+AGG | + | chr7.2:4741177-4741196 | None:intergenic | 30.0% | |
| TGTGATGGTTGGAAAATATT+TGG | - | chr7.2:4740990-4741009 | MS.gene28629:CDS | 30.0% | |
| TTTGAAGGCAAAAGTTACAA+AGG | - | chr7.2:4740142-4740161 | MS.gene28629:intron | 30.0% | |
| ! | AGGATCATATGGATTAAAAC+TGG | + | chr7.2:4740356-4740375 | None:intergenic | 30.0% |
| ! | GAGCTCATAGAAACAATTTT+AGG | + | chr7.2:4740283-4740302 | None:intergenic | 30.0% |
| ! | TTGGTAAGGGTAAAAGTTTT+TGG | + | chr7.2:4739900-4739919 | None:intergenic | 30.0% |
| ! | TTGGTGACAAATATAGTCAA+TGG | - | chr7.2:4741057-4741076 | MS.gene28629:CDS | 30.0% |
| ! | TTTGAAACTAATTTAGCGAC+CGG | + | chr7.2:4740469-4740488 | None:intergenic | 30.0% |
| !! | AAATATAGTCAATGGTGGAT+TGG | - | chr7.2:4741065-4741084 | MS.gene28629:CDS | 30.0% |
| AAAACTTATTTCCCAAGCTG+AGG | + | chr7.2:4740381-4740400 | None:intergenic | 35.0% | |
| AAATAATATGGGGGTGAGAA+TGG | + | chr7.2:4739738-4739757 | None:intergenic | 35.0% | |
| AAGTTGTTCAATGTGGATAC+TGG | - | chr7.2:4741150-4741169 | MS.gene28629:CDS | 35.0% | |
| AATTATAACTATGGACCAGC+AGG | - | chr7.2:4740844-4740863 | MS.gene28629:CDS | 35.0% | |
| AGCAGCGTTAAAATTCTTGA+CGG | - | chr7.2:4740330-4740349 | MS.gene28629:intron | 35.0% | |
| ATTATAACTATGGACCAGCA+GGG | - | chr7.2:4740845-4740864 | MS.gene28629:CDS | 35.0% | |
| ATTTCACATGAAACTACTGG+TGG | - | chr7.2:4740013-4740032 | MS.gene28629:CDS | 35.0% | |
| CAGATTTCACATGAAACTAC+TGG | - | chr7.2:4740010-4740029 | MS.gene28629:CDS | 35.0% | |
| CCTACACAAAAGTTTATGAG+AGG | + | chr7.2:4740824-4740843 | None:intergenic | 35.0% | |
| GCAAGAGTTAATGATCGAAT+TGG | - | chr7.2:4741108-4741127 | MS.gene28629:CDS | 35.0% | |
| GTGACAAATATAGTCAATGG+TGG | - | chr7.2:4741060-4741079 | MS.gene28629:CDS | 35.0% | |
| GTGATTCTACTGACAAAGAT+TGG | - | chr7.2:4740113-4740132 | MS.gene28629:intron | 35.0% | |
| TATTTCGTATCTGTAGTGAC+CGG | - | chr7.2:4740436-4740455 | MS.gene28629:intron | 35.0% | |
| TCATTAACTCTTGCATCATC+AGG | + | chr7.2:4741102-4741121 | None:intergenic | 35.0% | |
| TGTGGATTTGGACAAAGAAT+TGG | + | chr7.2:4740252-4740271 | None:intergenic | 35.0% | |
| TTGCTTTCAAAACTGCTCTA+TGG | - | chr7.2:4740926-4740945 | MS.gene28629:CDS | 35.0% | |
| TTTCACATGAAACTACTGGT+GGG | - | chr7.2:4740014-4740033 | MS.gene28629:CDS | 35.0% | |
| TTTCCTCAATTTGGTACTAC+AGG | - | chr7.2:4739944-4739963 | MS.gene28629:CDS | 35.0% | |
| ! | ACATTGTGACAAGAAGGTAT+TGG | + | chr7.2:4740973-4740992 | None:intergenic | 35.0% |
| ! | CCTCTCATAAACTTTTGTGT+AGG | - | chr7.2:4740821-4740840 | MS.gene28629:CDS | 35.0% |
| ! | CTTCAATGAAGGATTGGTAA+GGG | + | chr7.2:4739913-4739932 | None:intergenic | 35.0% |
| ! | GAATCACAGTAGTTACTTTG+AGG | + | chr7.2:4740100-4740119 | None:intergenic | 35.0% |
| ! | TAACTTTTGCCTTCAAAGCA+AGG | + | chr7.2:4740139-4740158 | None:intergenic | 35.0% |
| ! | TCAAAACTGCTCTATGGTTT+TGG | - | chr7.2:4740932-4740951 | MS.gene28629:CDS | 35.0% |
| !!! | CAATTTTAGGTTTGGATGTG+TGG | + | chr7.2:4740270-4740289 | None:intergenic | 35.0% |
| !!! | TAAGGGTAAAAGTTTTTGGC+AGG | + | chr7.2:4739896-4739915 | None:intergenic | 35.0% |
| AAGCATAAGCCCCAAGAAAA+TGG | + | chr7.2:4740061-4740080 | None:intergenic | 40.0% | |
| ACCATCACATTGTGACAAGA+AGG | + | chr7.2:4740979-4740998 | None:intergenic | 40.0% | |
| ACCTTCTTGTCACAATGTGA+TGG | - | chr7.2:4740975-4740994 | MS.gene28629:CDS | 40.0% | |
| ATGCAGTGTCATCTTTGTGT+AGG | + | chr7.2:4739871-4739890 | None:intergenic | 40.0% | |
| CAACCTGTAGTACCAAATTG+AGG | + | chr7.2:4739950-4739969 | None:intergenic | 40.0% | |
| GAGGTCCTATTCAACTATCT+TGG | - | chr7.2:4740167-4740186 | MS.gene28629:intron | 40.0% | |
| GGCAAAAGTTACAAAGGAAG+AGG | - | chr7.2:4740148-4740167 | MS.gene28629:intron | 40.0% | |
| TAGGTTTGGATGTGTGGATT+TGG | + | chr7.2:4740264-4740283 | None:intergenic | 40.0% | |
| TCTTGTCACAATGTGATGGT+TGG | - | chr7.2:4740979-4740998 | MS.gene28629:CDS | 40.0% | |
| TGGAAGCTTCAATGAAGGAT+TGG | + | chr7.2:4739919-4739938 | None:intergenic | 40.0% | |
| TGTGGATACTGGACCTAATT+TGG | - | chr7.2:4741161-4741180 | MS.gene28629:CDS | 40.0% | |
| TTCAACTCCTAAAGATGCAG+AGG | + | chr7.2:4739780-4739799 | None:intergenic | 40.0% | |
| TTTAGCGACCGGTTATAAAC+CGG | + | chr7.2:4740458-4740477 | None:intergenic | 40.0% | |
| ! | GCTTCAATGAAGGATTGGTA+AGG | + | chr7.2:4739914-4739933 | None:intergenic | 40.0% |
| ! | TGTAGTGACCGGTTTATAAC+CGG | - | chr7.2:4740447-4740466 | MS.gene28629:intron | 40.0% |
| !! | AAAGATTGGCCTTGCTTTGA+AGG | - | chr7.2:4740127-4740146 | MS.gene28629:intron | 40.0% |
| !! | ACCTGATGGACCATTTTCTT+GGG | - | chr7.2:4740048-4740067 | MS.gene28629:CDS | 40.0% |
| AACTCCTAAAGATGCAGAGG+AGG | + | chr7.2:4739777-4739796 | None:intergenic | 45.0% | |
| AAGCTGAGGTGAGGATCATA+TGG | + | chr7.2:4740367-4740386 | None:intergenic | 45.0% | |
| AGCTATCTCACGCTTTCTTG+TGG | + | chr7.2:4739978-4739997 | None:intergenic | 45.0% | |
| ATAGAAGCTAATCGCACAGC+TGG | - | chr7.2:4741027-4741046 | MS.gene28629:CDS | 45.0% | |
| ATATGATCCTCACCTCAGCT+TGG | - | chr7.2:4740366-4740385 | MS.gene28629:intron | 45.0% | |
| CTTTCCTCCTCTGCATCTTT+AGG | - | chr7.2:4739770-4739789 | MS.gene28629:CDS | 45.0% | |
| TATGATCCTCACCTCAGCTT+GGG | - | chr7.2:4740367-4740386 | MS.gene28629:intron | 45.0% | |
| TTATTTCCCAAGCTGAGGTG+AGG | + | chr7.2:4740376-4740395 | None:intergenic | 45.0% | |
| ! | ACATGAAACTACTGGTGGGT+GGG | - | chr7.2:4740018-4740037 | MS.gene28629:CDS | 45.0% |
| !! | CACCTGATGGACCATTTTCT+TGG | - | chr7.2:4740047-4740066 | MS.gene28629:CDS | 45.0% |
| !! | CCTGATGGACCATTTTCTTG+GGG | - | chr7.2:4740049-4740068 | MS.gene28629:CDS | 45.0% |
| !! | GGAAGGCGTTAGGATTTGAT+GGG | - | chr7.2:4740866-4740885 | MS.gene28629:CDS | 45.0% |
| !! | GTCAATGGTGGATTGGAATG+TGG | - | chr7.2:4741072-4741091 | MS.gene28629:CDS | 45.0% |
| !! | TATTAGATTAAATTATTATT+TGG | - | chr7.2:4740219-4740238 | MS.gene28629:intron | 5.0% |
| AAATGGTCCATCAGGTGCAG+TGG | + | chr7.2:4740044-4740063 | None:intergenic | 50.0% | |
| CACATGAAACTACTGGTGGG+TGG | - | chr7.2:4740017-4740036 | MS.gene28629:CDS | 50.0% | |
| CCCCAAGAAAATGGTCCATC+AGG | + | chr7.2:4740052-4740071 | None:intergenic | 50.0% | |
| TAACTATGGACCAGCAGGGA+AGG | - | chr7.2:4740849-4740868 | MS.gene28629:CDS | 50.0% | |
| !! | GCTAATCGCACAGCTGGTTT+TGG | - | chr7.2:4741033-4741052 | MS.gene28629:CDS | 50.0% |
| !! | GGGAAGGCGTTAGGATTTGA+TGG | - | chr7.2:4740865-4740884 | MS.gene28629:CDS | 50.0% |
| !!! | TCGCACAGCTGGTTTTGGAT+TGG | - | chr7.2:4741038-4741057 | MS.gene28629:CDS | 50.0% |
| AATCCTAACGCCTTCCCTGC+TGG | + | chr7.2:4740862-4740881 | None:intergenic | 55.0% | |
| !! | GGACCAGCAGGGAAGGCGTT+AGG | - | chr7.2:4740856-4740875 | MS.gene28629:CDS | 65.0% |
| GGGTGGGCCACTGCACCTGA+TGG | - | chr7.2:4740034-4740053 | MS.gene28629:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4739725 | 4741209 | 4739725 | ID=MS.gene28629 |
| chr7.2 | mRNA | 4739725 | 4741209 | 4739725 | ID=MS.gene28629.t1;Parent=MS.gene28629 |
| chr7.2 | exon | 4740746 | 4741209 | 4740746 | ID=MS.gene28629.t1.exon1;Parent=MS.gene28629.t1 |
| chr7.2 | CDS | 4740746 | 4741209 | 4740746 | ID=cds.MS.gene28629.t1;Parent=MS.gene28629.t1 |
| chr7.2 | exon | 4739725 | 4740091 | 4739725 | ID=MS.gene28629.t1.exon2;Parent=MS.gene28629.t1 |
| chr7.2 | CDS | 4739725 | 4740091 | 4739725 | ID=cds.MS.gene28629.t1;Parent=MS.gene28629.t1 |
| Gene Sequence |
| Protein sequence |
