AlfalfaGEDB | MS.gene29370

M. sativa cultivar XinJiangDaYe / MS.gene29370

KEGG: K03676
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29370.t1	XP_003601243.1	96.7	121	4	0	1	121	1	121	1.40E-58	235.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29370.t1	Q8L8T2	68.6	118	36	1	1	117	1	118	4.9e-39	161.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29370.t1	G7J5D8	96.7	121	4	0	1	121	1	121	1.0e-58	235.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005632	MS.gene29370	PPI
MS.gene005633	MS.gene29370	PPI
MS.gene006980	MS.gene29370	PPI
MS.gene006983	MS.gene29370	PPI
MS.gene03023	MS.gene29370	PPI
MS.gene03026	MS.gene29370	PPI
MS.gene035290	MS.gene29370	PPI
MS.gene035291	MS.gene29370	PPI
MS.gene036524	MS.gene29370	PPI
MS.gene036528	MS.gene29370	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29370.t1	MTR_3g077570	96.694	121	4	0	1	121	1	121	1.59e-84	242
MS.gene29370.t1	MTR_3g077560	78.333	120	23	1	1	117	1	120	1.63e-66	197
MS.gene29370.t1	MTR_7g035245	64.762	105	37	0	17	121	2	106	8.22e-46	144
MS.gene29370.t1	MTR_1g069255	51.042	96	46	1	22	116	87	182	5.01e-27	99.0
MS.gene29370.t1	MTR_2g038560	47.059	85	45	0	27	111	37	121	1.55e-24	90.9
MS.gene29370.t1	MTR_2g038560	50.000	80	40	0	32	111	83	162	2.34e-24	91.7
MS.gene29370.t1	MTR_2g038560	50.000	80	40	0	32	111	86	165	2.46e-24	91.7
MS.gene29370.t1	MTR_5g021090	44.318	88	49	0	27	114	42	129	9.24e-21	81.3
MS.gene29370.t1	MTR_1g088905	37.000	100	63	0	18	117	1	100	1.64e-19	77.4
MS.gene29370.t1	MTR_2g019900	38.000	100	62	0	18	117	1	100	2.89e-19	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29370.t1	AT5G63030	68.644	118	36	1	1	117	1	118	8.09e-55	167
MS.gene29370.t1	AT5G40370	70.297	101	30	0	17	117	2	102	3.73e-49	152
MS.gene29370.t1	AT5G40370	69.767	86	26	0	32	117	42	127	3.50e-41	133
MS.gene29370.t1	AT5G20500	41.593	113	62	1	3	115	21	129	4.16e-26	95.1
MS.gene29370.t1	AT2G20270	49.474	95	47	1	21	114	78	172	6.78e-26	95.9
MS.gene29370.t1	AT1G77370	48.235	85	44	0	27	111	43	127	1.88e-23	88.2
MS.gene29370.t1	AT4G28730	41.748	103	58	2	14	114	65	167	2.51e-22	86.7
MS.gene29370.t1	AT2G20270	38.525	122	47	1	21	114	78	199	2.23e-21	85.1
MS.gene29370.t1	AT5G18600	39.000	100	61	0	18	117	1	100	7.46e-19	75.9
MS.gene29370.t1	AT1G03020	41.000	100	59	0	18	117	1	100	2.19e-18	74.7

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Find 39 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGAAGACAAAGACG+GGG	0.724205	3.2:-68585670	None:intergenic
AAACCTGAAGACAAAGACGG+GGG	0.745087	3.2:-68585669	None:intergenic
AACTGCCATGAACAAAGCTA+AGG	0.605066	3.2:+68585631	MS.gene29370:CDS
AAGGATCTACTCAAACAGCT+GGG	0.654980	3.2:+68586783	MS.gene29370:CDS
ACAGCTGGGAGCAGCCCACA+AGG	0.635312	3.2:+68586797	MS.gene29370:CDS
ACAGTACCTAACGTGTTTAT+TGG	0.289321	3.2:+68588369	MS.gene29370:CDS
AGAAAACCTGAAGACAAAGA+CGG	0.636207	3.2:-68585672	None:intergenic
AGCCCACAAGGTCATTGAAT+TGG	0.441001	3.2:+68586809	MS.gene29370:CDS
ATTGGAGGCAAGCACATTGG+TGG	0.528449	3.2:+68588387	MS.gene29370:CDS
CAAGGATCTACTCAAACAGC+TGG	0.497844	3.2:+68586782	MS.gene29370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACAAAGGGCAGAAAT+TGG	+	chr3.2:68588037-68588056	MS.gene29370:intron	30.0%
AAAAACAAAGGGCAGAAATT+GGG	+	chr3.2:68588038-68588057	MS.gene29370:intron	30.0%
AATACAAAATCTCCGTATAC+GGG	+	chr3.2:68587070-68587089	MS.gene29370:intron	30.0%
AATCCTCAACAAAATCTGAT+TGG	-	chr3.2:68587675-68587694	None:intergenic	30.0%
ACAAACAAAGACCTAAAAAG+GGG	-	chr3.2:68586941-68586960	None:intergenic	30.0%
AGACATTCAAGAAAATCGTT+AGG	-	chr3.2:68585811-68585830	None:intergenic	30.0%
ATCTCATGTATGCATTGAAT+TGG	+	chr3.2:68586648-68586667	MS.gene29370:intron	30.0%
CCACAACATAAATTACAGAA+TGG	-	chr3.2:68586724-68586743	None:intergenic	30.0%
CCAGATCAACTAATCATAAA+CGG	+	chr3.2:68587341-68587360	MS.gene29370:intron	30.0%
CCATTCTGTAATTTATGTTG+TGG	+	chr3.2:68586721-68586740	MS.gene29370:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	68585587	68588803	68585587	ID=MS.gene29370
chr3.2	mRNA	68585587	68588803	68585587	ID=MS.gene29370.t1;Parent=MS.gene29370
chr3.2	exon	68585587	68585687	68585587	ID=MS.gene29370.t1.exon1;Parent=MS.gene29370.t1
chr3.2	CDS	68585587	68585687	68585587	ID=cds.MS.gene29370.t1;Parent=MS.gene29370.t1
chr3.2	exon	68586752	68586840	68586752	ID=MS.gene29370.t1.exon2;Parent=MS.gene29370.t1
chr3.2	CDS	68586752	68586840	68586752	ID=cds.MS.gene29370.t1;Parent=MS.gene29370.t1
chr3.2	exon	68588319	68588417	68588319	ID=MS.gene29370.t1.exon3;Parent=MS.gene29370.t1
chr3.2	CDS	68588319	68588417	68588319	ID=cds.MS.gene29370.t1;Parent=MS.gene29370.t1
chr3.2	exon	68588727	68588803	68588727	ID=MS.gene29370.t1.exon4;Parent=MS.gene29370.t1
chr3.2	CDS	68588727	68588803	68588727	ID=cds.MS.gene29370.t1;Parent=MS.gene29370.t1

Gene Sequence

>MS.gene29370

ATGGGTTCTATGCAGAGTTCTGCGAAGAGCAAAGAAGTGATGGGAACTGCCATGAACAAAGCTAAGGAGATCGCCGCTTCATCCCCCGTCTTTGTCTTCAGGTTTTCTATTTCGTTCATATTTTTTTTTTTAATAACTTCATTTTTCATTAAATTTAACTTTAAAAAAATGAACTGATTGTGGGGATGCCAGTGATTTTTAGGGTTTAGGGGAATCTCAACCCTAACGATTTTCTTGAATGTCTAAAGATTTTCTTGAATCGTCTAACGATTTTTAAGAAAATCGTTATTTTTAAGAAAATCTTGAATCAGTATTTGGTGTGTCTAACGATTTTCTTGAATCAGTATTTGGTGTGTCTAAACATTCAAGATTTTCTTGAATGTCTAAAGAGCAATTTTTAAGACACACCAAATACTGATTTTCTTGAATCAGTTGCTTGTTATGCTCTTTAATGAAAAGGGACGTGGCAATGTAAACACGCACGTGTTGGTTGGAGTGTGTCCAAGCGTTTGACGCTAGGGGTTCTCTTATATAATATAGGTTGGAAAATAAATTCAAATCTAAAAATCAATTATCGAAGCCAATAGCTGCAAATTCTAGTTAAAGTTAGAATCAATTCTAGAGACATGATCATTTTTCCTCAAGAACATTCAAACATGTCAAAATCGATTCTACTCCTTTAGAATCAATTTCGGCTTCTCTAAAAGTGGAACCAAACATACACTCAGCCTTCGTTTCGAAACACGACGTAACCTGACGTCCACACAGAAGCACTGATTGTGGCTTCCCAATTTTCACAATAAAAACTCACGGTAATTGTAGCTTCACAATTTTCATGTGTAAAGTACATGGGATTCAAGAATGAGTCTTCAAAAGCTGTTCCTAACACACACTTAGCTGTTTTATTTTTTTACCAAACAAACAAAATTTATTAAACACAAAAAAGGGGTTACAAAGGATTGGGTGGGGTGGGGGGGAAGAACCAATGCCTAATAAGTCCCTATAGAAATAATAGCCAATAAAAGCGGGCACTTAGCTGTTAGGCAATGTTGTGCAATTTGATCTCATGTATGCATTGAATTGGTTGTCGAGACAACTTGTTGTCTTTCACACGTAGGTTTAATGTTGATAATCCCATTCTGTAATTTATGTTGTGGTGTGGCAGTAAGACTTATTGTGGTTACTGCAATCGGGTCAAGGATCTACTCAAACAGCTGGGAGCAGCCCACAAGGTCATTGAATTGGACAGAGAAAGTGAGTTTACTTTCAATGCCGTCTCAATATATTTCATGTTTGCTCGATTATCTGCTTTTTTCCAAAAGTTGAATGTGAGGACTATTTTGTTTTGTTGCCCCTTTTTAGGTCTTTGTTTGTTATTGAACCTCTTAGACATATTTTAAGTTTTCCAATTTCACTTGGGCTATGTTTGGGAGTTTTGGAGGGAAGGAGAGAACTTTGTAGAAAATGAAAAAGAAGAAAGGAGAATACAAAATCTCCGTATACGGGAAAACAAAAAATGTATTGGTAGAAGACTTTAGAGGGCAGACATGAATTTTTTATTTCAATGTTTTTATAATAGTCTCCATTAAAAGTATATTAATCATAAACATTTTCTTCTCATTCTCTACAAAAAAACTCTCTTAAATAAGCTAGATTTGTGTCTTTTCCTCCCCTCTCTCCTCCTCTCCAAACCTCTCAAACTGAGCTTACTTGCTAGTTTAGTTTTGCCTTAGTTACTAATTACTAGTTTAGTTCCAGATCAACTAATCATAAACGGTGCCGAGGTAAATTATTAATTCTGTGCACAACACATGTCTTGTCATAACATTATTTTGAGGGTGGCTTCTAAGTTGAGGGAGTAATCAAGTCCCTCACCGGTGTACCATCAATAATATACCATAAGATCTATTTGAAGGTTTAGATTTGTTGAAACAAAAAAGAGCAACACCTATGCCTTGCCCCACCCAATCCCACTCTTCTTTTCATTTCCGGCAAACTCTTCCATGTTCTCATCCACTCATCGGAGGCAAGAAGATCTGCTCCTTCGCCATCACCCCTCCTCATTTTTTTTTTATCCGTTCATTTCCAATCAGATTTTGTTGAGGATTGATAAAAGAATTACCAGTATGATTGTTTTGGTCATCATAAAGTATTTTCTAGAAACTGATCCAAATCCATAAAATCCAAGAATTTCATGCAATACAAAAATTTGAAGGCAAAAGTTAAGTAAAACAGATTTTTATACGCACTGGAGAGAAACATGATAAGAATTCATACACCCAAATAATCATTTTGTAACGTAAATAATGGTCTTATTCAGAAGTAAGAGTTTTTCATGGCTTTCTTTGCACAATTCTGCTTCCAAGGTTCATAATATCCCTCCTCATGTTGGGTTCCTTACAATGGAATCGCCGATGAACCTCACTGTCTAACATAAAAGGTTTTGCTGGAAAAAACAAAGGGCAGAAATTGGGTGGGTCAAGGCATAGGTGTTCTTTTTTGTTTCAACCAATCTACCCTAAAATAGATCTTGTGATATATTATTGATGGTACACCGGTGAGGGATTTAATTGCTCCCTCACCTTAGAAGCCACATATTTTGAGTTCATTGTTACTTTGATATTATTGTACGAGTACCGTGCTTTGTGAAAAAGACAAAAATGAGTGTTATTTCCAATTAAATCCAAAGTGGGGATCTAGTATTATCTTCTGCTGTTTTTACCTATTTGAAGGTGATGGGGGTGAGATTCAAGCAGCATTAGCTGAGTGGACAGGGCAAAGGACAGTACCTAACGTGTTTATTGGAGGCAAGCACATTGGTGGTTGTGATTGTAAGGCCACACTCCTTTAGCTACTTTTTCATGAGGCGAACCAAAACTAGAGTTTTTATTGTTCTGTTTTTCATTAGAGTAATGATATTTTAACATCCATTTGATGACAACTTTGTTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAGCAATGGAGAGAGAAAAAGAAAGAGAGAGGATAACAACATCATGTAAGTATGAGAGAGAAAGTTGTCCAAAAGTTGTCAAAAAGTGGTTGTCAAAATATCATTTCTCTTTTCATTATTTGTGTGTAACATTTTTATCACATGTTTATTTGTTTCAGCTGTTTTGGAGAAACACCGGACAGGTCAATTGGTTCCCCTTCTCAATGATGCTGGAGCCATTCCGCTCAGCACTTAA

Protein sequence

>MS.gene29370.t1

MGSMQSSAKSKEVMGTAMNKAKEIAASSPVFVFSKTYCGYCNRVKDLLKQLGAAHKVIELDRESDGGEIQAALAEWTGQRTVPNVFIGGKHIGGCDSVLEKHRTGQLVPLLNDAGAIPLST