AlfalfaGEDB | MS.gene03024

M. sativa cultivar XinJiangDaYe / MS.gene03024

KEGG: K03676
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03024.t1	XP_013469212.1	96.1	102	4	0	1	102	1	102	8.20E-47	196.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03024.t1	Q9LYC8	62.7	102	38	0	1	102	1	102	5.2e-34	144.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03024.t1	A0A072VYV0	96.1	102	4	0	1	102	1	102	5.9e-47	196.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene03024	MS.gene07181	PPI
MS.gene005633	MS.gene03024	PPI
MS.gene050229	MS.gene03024	PPI
MS.gene03024	MS.gene03022	PPI
MS.gene036528	MS.gene03024	PPI
MS.gene006984	MS.gene03024	PPI
MS.gene25978	MS.gene03024	PPI
MS.gene006983	MS.gene03024	PPI
MS.gene005630	MS.gene03024	PPI
MS.gene006980	MS.gene03024	PPI
MS.gene041518	MS.gene03024	PPI
MS.gene03024	MS.gene005628	PPI
MS.gene20704	MS.gene03024	PPI
MS.gene03024	MS.gene005630	PPI
MS.gene035290	MS.gene03024	PPI
MS.gene87167	MS.gene03024	PPI
MS.gene036527	MS.gene03024	PPI
MS.gene59643	MS.gene03024	PPI
MS.gene005629	MS.gene03024	PPI
MS.gene23008	MS.gene03024	PPI
MS.gene29979	MS.gene03024	PPI
MS.gene70642	MS.gene03024	PPI
MS.gene20702	MS.gene03024	PPI
MS.gene20703	MS.gene03024	PPI
MS.gene07179	MS.gene03024	PPI
MS.gene07183	MS.gene03024	PPI
MS.gene25976	MS.gene03024	PPI
MS.gene041521	MS.gene03024	PPI
MS.gene23007	MS.gene03024	PPI
MS.gene03024	MS.gene006984	PPI
MS.gene58938	MS.gene03024	PPI
MS.gene036524	MS.gene03024	PPI
MS.gene03022	MS.gene03024	PPI
MS.gene022312	MS.gene03024	PPI
MS.gene035294	MS.gene03024	PPI
MS.gene70641	MS.gene03024	PPI
MS.gene005632	MS.gene03024	PPI
MS.gene03024	MS.gene005631	PPI
MS.gene07180	MS.gene03024	PPI
MS.gene03024	MS.gene022311	PPI
MS.gene23009	MS.gene03024	PPI
MS.gene041519	MS.gene03024	PPI
MS.gene03024	MS.gene20701	PPI
MS.gene035291	MS.gene03024	PPI
MS.gene23005	MS.gene03024	PPI
MS.gene29370	MS.gene03024	PPI
MS.gene58937	MS.gene03024	PPI
MS.gene29371	MS.gene03024	PPI
MS.gene03023	MS.gene03024	PPI
MS.gene03026	MS.gene03024	PPI
MS.gene03024	MS.gene006982	PPI
MS.gene07182	MS.gene03024	PPI
MS.gene58935	MS.gene03024	PPI
MS.gene52509	MS.gene03024	PPI
MS.gene03024	MS.gene050229	PPI
MS.gene20705	MS.gene03024	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03024.t1	MTR_1g088905	96.078	102	4	0	1	102	1	102	5.22e-69	201
MS.gene03024.t1	MTR_7g108250	76.471	102	24	0	1	102	1	102	5.92e-58	174
MS.gene03024.t1	MTR_4g119050	58.252	103	42	1	1	102	1	103	5.03e-42	133
MS.gene03024.t1	MTR_4g119030	58.252	103	42	1	1	102	1	103	5.03e-42	133
MS.gene03024.t1	MTR_4g119040	58.252	103	42	1	1	102	1	103	5.03e-42	133
MS.gene03024.t1	MTR_2g019900	54.902	102	46	0	1	102	1	102	1.48e-41	132
MS.gene03024.t1	MTR_1g088895	53.922	102	47	0	1	102	1	102	4.72e-39	126
MS.gene03024.t1	MTR_7g108260	55.446	101	45	0	1	101	1	101	4.84e-38	123
MS.gene03024.t1	MTR_2g019950	53.922	102	47	0	1	102	1	102	3.60e-36	119
MS.gene03024.t1	MTR_1g088910	50.000	102	51	0	1	102	1	102	1.90e-32	109
MS.gene03024.t1	MTR_7g108220	48.544	103	52	1	1	102	1	103	1.15e-30	105
MS.gene03024.t1	MTR_7g108210	47.573	103	53	1	1	102	1	103	6.68e-30	102
MS.gene03024.t1	MTR_7g022690	43.689	103	57	1	1	102	30	132	1.99e-27	97.8
MS.gene03024.t1	MTR_7g026770	48.544	103	52	1	1	102	22	124	5.37e-27	100
MS.gene03024.t1	MTR_7g022710	41.748	103	59	1	1	102	30	132	5.48e-27	96.7
MS.gene03024.t1	MTR_1g088920	41.489	94	55	0	1	94	1	94	1.07e-26	94.7
MS.gene03024.t1	MTR_7g108200	43.617	94	53	0	1	94	1	94	1.17e-26	94.7
MS.gene03024.t1	MTR_1g088925	39.362	94	57	0	1	94	1	94	1.52e-26	94.4
MS.gene03024.t1	MTR_7g022550	40.777	103	60	1	1	102	30	132	3.97e-25	91.7
MS.gene03024.t1	MTR_2g090755	38.462	104	59	2	2	102	39	140	2.15e-21	82.4
MS.gene03024.t1	MTR_2g048970	40.000	105	59	1	2	102	29	133	2.39e-20	79.7
MS.gene03024.t1	MTR_4g079110	37.255	102	61	2	3	102	55	155	1.31e-19	78.2
MS.gene03024.t1	MTR_2g014760	35.354	99	64	0	4	102	29	127	1.56e-19	77.4
MS.gene03024.t1	MTR_3g077570	38.000	100	62	0	1	100	18	117	1.70e-19	77.0
MS.gene03024.t1	MTR_3g077560	36.000	100	64	0	1	100	21	120	3.40e-18	73.9
MS.gene03024.t1	MTR_7g035245	42.105	95	55	0	6	100	8	102	8.45e-18	72.4
MS.gene03024.t1	MTR_1g015890	35.644	101	63	1	4	102	49	149	1.93e-17	72.8
MS.gene03024.t1	MTR_1g069255	37.374	99	61	1	2	99	84	182	7.21e-16	69.3
MS.gene03024.t1	MTR_3g104510	35.354	99	58	3	4	101	24	117	2.16e-14	63.9
MS.gene03024.t1	MTR_5g077550	37.500	104	61	2	2	102	21	123	4.72e-14	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03024.t1	AT3G62930	62.745	102	38	0	1	102	1	102	2.86e-48	149
MS.gene03024.t1	AT1G03020	58.824	102	42	0	1	102	1	102	1.97e-46	144
MS.gene03024.t1	AT5G18600	59.804	102	41	0	1	102	1	102	3.97e-46	144
MS.gene03024.t1	AT4G15680	57.843	102	43	0	1	102	1	102	1.27e-43	137
MS.gene03024.t1	AT4G15690	57.843	102	43	0	1	102	1	102	4.89e-43	136
MS.gene03024.t1	AT4G15700	56.863	102	44	0	1	102	1	102	5.58e-43	135
MS.gene03024.t1	AT4G15670	53.922	102	47	0	1	102	1	102	3.05e-41	131
MS.gene03024.t1	AT4G15660	54.902	102	46	0	1	102	1	102	7.58e-41	130
MS.gene03024.t1	AT3G21460	48.039	102	53	0	1	102	1	102	2.97e-33	111
MS.gene03024.t1	AT3G62950	45.631	103	55	1	1	102	1	103	2.54e-29	101
MS.gene03024.t1	AT1G06830	43.617	94	53	0	1	94	1	94	4.03e-28	98.6
MS.gene03024.t1	AT2G47870	40.777	103	60	1	1	102	1	103	4.05e-28	98.6
MS.gene03024.t1	AT2G30540	43.617	94	53	0	1	94	1	94	8.45e-28	97.8
MS.gene03024.t1	AT2G47880	41.489	94	55	0	1	94	1	94	1.82e-26	94.4
MS.gene03024.t1	AT5G14070	42.991	107	53	2	4	102	34	140	2.66e-26	95.1
MS.gene03024.t1	AT3G62960	40.426	94	56	0	1	94	1	94	2.65e-25	91.3
MS.gene03024.t1	AT3G02000	43.810	105	53	1	4	102	32	136	3.32e-23	87.0
MS.gene03024.t1	AT5G63030	43.158	95	54	0	6	100	24	118	6.31e-20	78.6
MS.gene03024.t1	AT4G33040	37.500	104	59	2	4	102	42	144	3.18e-18	74.7
MS.gene03024.t1	AT5G40370	39.000	100	61	0	1	100	3	102	1.27e-17	72.0
MS.gene03024.t1	AT1G28480	30.476	105	69	2	2	102	33	137	1.33e-16	70.1
MS.gene03024.t1	AT5G11930	34.343	99	55	3	4	101	58	147	2.41e-16	69.7
MS.gene03024.t1	AT2G20270	34.343	99	64	1	2	99	76	174	4.39e-16	69.7
MS.gene03024.t1	AT1G03850	32.292	96	61	1	7	102	59	150	4.38e-15	66.6
MS.gene03024.t1	AT5G40370	39.535	86	52	0	15	100	42	127	2.81e-13	61.6
MS.gene03024.t1	AT4G28730	33.333	99	65	1	2	99	71	169	2.18e-12	60.1
MS.gene03024.t1	AT5G20500	32.990	97	65	0	2	98	33	129	3.14e-12	58.9

Find 25 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTGTACCAGTTGTGTTTAT+TGG	0.272819	1.3:-62323775	MS.gene03024:CDS
TCATCAAGCTCATAAACAAT+TGG	0.354952	1.3:+62323853	None:intergenic
TCATGAATGCCGGAGCTATA+TGG	0.387749	1.3:-62323684	MS.gene03024:CDS
TAGAGCCACCAATGAATTGT+TGG	0.395335	1.3:+62323752	None:intergenic
GAGCTTGATGAGATAACAAA+TGG	0.409290	1.3:-62323841	MS.gene03024:CDS
CATCAAGCTCATAAACAATT+GGG	0.430944	1.3:+62323854	None:intergenic
GAATCATGACCCTTCATCTT+CGG	0.437884	1.3:-62323726	MS.gene03024:CDS
TGTTGGCCAATAAACACAAC+TGG	0.465473	1.3:+62323769	None:intergenic
TTTATTGGCCAACAATTCAT+TGG	0.465893	1.3:-62323760	MS.gene03024:CDS
ATGACATTGATACGAAGCTT+TGG	0.484478	1.3:-62323883	MS.gene03024:CDS
CTAGCTCATTCCGAAGATGA+AGG	0.506749	1.3:+62323716	None:intergenic
ATTGGCCAACAATTCATTGG+TGG	0.532087	1.3:-62323757	MS.gene03024:CDS
AAATTAAATCCATATAGCTC+CGG	0.539907	1.3:+62323675	None:intergenic
GAAAGAGCACTGATTCAACT+AGG	0.544425	1.3:-62323808	MS.gene03024:CDS
ACACAACTGGTACACTTGGT+TGG	0.550739	1.3:+62323782	None:intergenic
GTACCTATGCTCATGAATGC+CGG	0.552236	1.3:-62323694	MS.gene03024:CDS
ATAAACACAACTGGTACACT+TGG	0.565056	1.3:+62323778	None:intergenic
GCTTCGTATCAATGTCATGA+TGG	0.581724	1.3:+62323888	None:intergenic
AGCTTGATGAGATAACAAAT+GGG	0.593380	1.3:-62323840	MS.gene03024:CDS
TAATCATGGACATGATTACA+AGG	0.612323	1.3:-62323969	None:intergenic
TAGCTCATTCCGAAGATGAA+GGG	0.619643	1.3:+62323717	None:intergenic
AAAGAGCACTGATTCAACTA+GGG	0.626942	1.3:-62323807	MS.gene03024:CDS
GTATCAATGTCATGATGGAG+TGG	0.644776	1.3:+62323893	None:intergenic
GCTCCGGCATTCATGAGCAT+AGG	0.659701	1.3:+62323691	None:intergenic
GATAGTGAGTGATAAACCTG+TGG	0.751670	1.3:-62323947	MS.gene03024:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AGCTTGATGAGATAACAAAT+GGG	-	chr1.3:62323802-62323821	MS.gene03024:CDS	30.0%
	CATCAAGCTCATAAACAATT+GGG	+	chr1.3:62323791-62323810	None:intergenic	30.0%
	TCATCAAGCTCATAAACAAT+TGG	+	chr1.3:62323792-62323811	None:intergenic	30.0%
	TTTATTGGCCAACAATTCAT+TGG	-	chr1.3:62323882-62323901	MS.gene03024:CDS	30.0%
	AGTGTACCAGTTGTGTTTAT+TGG	-	chr1.3:62323867-62323886	MS.gene03024:CDS	35.0%
	ATAAACACAACTGGTACACT+TGG	+	chr1.3:62323867-62323886	None:intergenic	35.0%
	ATGACATTGATACGAAGCTT+TGG	-	chr1.3:62323759-62323778	MS.gene03024:CDS	35.0%
	GAGCTTGATGAGATAACAAA+TGG	-	chr1.3:62323801-62323820	MS.gene03024:CDS	35.0%
!!	AAAGAGCACTGATTCAACTA+GGG	-	chr1.3:62323835-62323854	MS.gene03024:CDS	35.0%
	ATTGGCCAACAATTCATTGG+TGG	-	chr1.3:62323885-62323904	MS.gene03024:CDS	40.0%
	GAATCATGACCCTTCATCTT+CGG	-	chr1.3:62323916-62323935	MS.gene03024:CDS	40.0%
	GATAGTGAGTGATAAACCTG+TGG	-	chr1.3:62323695-62323714	MS.gene03024:CDS	40.0%
	GCTTCGTATCAATGTCATGA+TGG	+	chr1.3:62323757-62323776	None:intergenic	40.0%
	TAGAGCCACCAATGAATTGT+TGG	+	chr1.3:62323893-62323912	None:intergenic	40.0%
	TAGCTCATTCCGAAGATGAA+GGG	+	chr1.3:62323928-62323947	None:intergenic	40.0%
	TGTTGGCCAATAAACACAAC+TGG	+	chr1.3:62323876-62323895	None:intergenic	40.0%
!	CTTTTGCTGAATATCACCAC+AGG	+	chr1.3:62323714-62323733	None:intergenic	40.0%
!	GTATCAATGTCATGATGGAG+TGG	+	chr1.3:62323752-62323771	None:intergenic	40.0%
!!	GAAAGAGCACTGATTCAACT+AGG	-	chr1.3:62323834-62323853	MS.gene03024:CDS	40.0%
	ACACAACTGGTACACTTGGT+TGG	+	chr1.3:62323863-62323882	None:intergenic	45.0%
	CTAGCTCATTCCGAAGATGA+AGG	+	chr1.3:62323929-62323948	None:intergenic	45.0%
	GTACCTATGCTCATGAATGC+CGG	-	chr1.3:62323948-62323967	MS.gene03024:CDS	45.0%
	TCATGAATGCCGGAGCTATA+TGG	-	chr1.3:62323958-62323977	MS.gene03024:CDS	45.0%
	GCTCCGGCATTCATGAGCAT+AGG	+	chr1.3:62323954-62323973	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	62323678	62323986	62323678	ID=MS.gene03024
chr1.3	mRNA	62323678	62323986	62323678	ID=MS.gene03024.t1;Parent=MS.gene03024
chr1.3	exon	62323678	62323986	62323678	ID=MS.gene03024.t1.exon1;Parent=MS.gene03024.t1
chr1.3	CDS	62323678	62323986	62323678	ID=cds.MS.gene03024.t1;Parent=MS.gene03024.t1

Gene Sequence	>MS.gene03024 ATGGACATGATTACAAGGATAGTGAGTGATAAACCTGTGGTGATATTCAGCAAAAGCACATGTTGTTTGAGCCACTCCATCATGACATTGATACGAAGCTTTGGTGCAAACCCAATTGTTTATGAGCTTGATGAGATAACAAATGGGACACAGATAGAAAGAGCACTGATTCAACTAGGGTGCCAACCAAGTGTACCAGTTGTGTTTATTGGCCAACAATTCATTGGTGGCTCTAAAAGAATCATGACCCTTCATCTTCGGAATGAGCTAGTACCTATGCTCATGAATGCCGGAGCTATATGGATTTAA
Protein sequence	>MS.gene03024.t1 MDMITRIVSDKPVVIFSKSTCCLSHSIMTLIRSFGANPIVYELDEITNGTQIERALIQLGCQPSVPVVFIGQQFIGGSKRIMTLHLRNELVPMLMNAGAIWI