Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29979.t1 | XP_013448230.1 | 99.1 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 4.00E-52 | 213.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29979.t1 | P55142 | 77.1 | 105 | 24 | 0 | 1 | 105 | 1 | 105 | 2.7e-41 | 169.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29979.t1 | A0A072TXU3 | 99.1 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.9e-52 | 213.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29979.t1 | MTR_7g035245 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 5.32e-75 | 217 |
| MS.gene29979.t1 | MTR_3g077570 | 65.714 | 105 | 36 | 0 | 2 | 106 | 17 | 121 | 9.17e-47 | 146 |
| MS.gene29979.t1 | MTR_3g077560 | 60.377 | 106 | 42 | 0 | 2 | 107 | 20 | 125 | 2.34e-45 | 143 |
| MS.gene29979.t1 | MTR_1g069255 | 52.083 | 96 | 45 | 1 | 7 | 101 | 87 | 182 | 5.02e-26 | 95.9 |
| MS.gene29979.t1 | MTR_2g038560 | 44.828 | 87 | 48 | 0 | 10 | 96 | 35 | 121 | 7.54e-24 | 88.6 |
| MS.gene29979.t1 | MTR_5g021090 | 43.333 | 90 | 51 | 0 | 10 | 99 | 40 | 129 | 1.88e-23 | 87.8 |
| MS.gene29979.t1 | MTR_2g038560 | 44.828 | 87 | 48 | 0 | 10 | 96 | 79 | 165 | 2.30e-23 | 88.6 |
| MS.gene29979.t1 | MTR_2g038560 | 44.828 | 87 | 48 | 0 | 10 | 96 | 76 | 162 | 2.41e-23 | 88.6 |
| MS.gene29979.t1 | MTR_2g019900 | 40.000 | 100 | 60 | 0 | 3 | 102 | 1 | 100 | 9.33e-21 | 80.1 |
| MS.gene29979.t1 | MTR_4g119050 | 40.594 | 101 | 59 | 1 | 3 | 102 | 1 | 101 | 2.25e-19 | 76.6 |
| MS.gene29979.t1 | MTR_4g119030 | 40.594 | 101 | 59 | 1 | 3 | 102 | 1 | 101 | 2.25e-19 | 76.6 |
| MS.gene29979.t1 | MTR_4g119040 | 40.594 | 101 | 59 | 1 | 3 | 102 | 1 | 101 | 2.25e-19 | 76.6 |
| MS.gene29979.t1 | MTR_7g108260 | 42.553 | 94 | 54 | 0 | 9 | 102 | 7 | 100 | 1.42e-18 | 74.3 |
| MS.gene29979.t1 | MTR_1g088905 | 41.053 | 95 | 56 | 0 | 8 | 102 | 6 | 100 | 4.01e-18 | 73.2 |
| MS.gene29979.t1 | MTR_7g026770 | 41.584 | 101 | 58 | 1 | 3 | 102 | 22 | 122 | 2.47e-17 | 75.1 |
| MS.gene29979.t1 | MTR_7g022690 | 36.634 | 101 | 63 | 1 | 3 | 102 | 30 | 130 | 4.56e-16 | 68.9 |
| MS.gene29979.t1 | MTR_1g088910 | 35.000 | 100 | 65 | 0 | 3 | 102 | 1 | 100 | 6.33e-16 | 67.8 |
| MS.gene29979.t1 | MTR_7g022550 | 36.634 | 101 | 63 | 1 | 3 | 102 | 30 | 130 | 8.08e-16 | 68.2 |
| MS.gene29979.t1 | MTR_7g022710 | 35.644 | 101 | 64 | 1 | 3 | 102 | 30 | 130 | 1.29e-15 | 67.8 |
| MS.gene29979.t1 | MTR_7g108250 | 39.362 | 94 | 57 | 0 | 9 | 102 | 7 | 100 | 3.33e-15 | 65.9 |
| MS.gene29979.t1 | MTR_1g088925 | 36.170 | 94 | 60 | 0 | 3 | 96 | 1 | 94 | 3.80e-15 | 65.5 |
| MS.gene29979.t1 | MTR_2g048970 | 38.384 | 99 | 57 | 1 | 8 | 102 | 33 | 131 | 4.74e-15 | 66.2 |
| MS.gene29979.t1 | MTR_2g019950 | 35.000 | 100 | 65 | 0 | 3 | 102 | 1 | 100 | 4.81e-15 | 65.5 |
| MS.gene29979.t1 | MTR_1g088920 | 35.106 | 94 | 61 | 0 | 3 | 96 | 1 | 94 | 5.86e-15 | 65.1 |
| MS.gene29979.t1 | MTR_1g088895 | 37.234 | 94 | 59 | 0 | 9 | 102 | 7 | 100 | 1.31e-14 | 64.3 |
| MS.gene29979.t1 | MTR_7g108220 | 34.653 | 101 | 65 | 1 | 3 | 102 | 1 | 101 | 2.27e-14 | 63.5 |
| MS.gene29979.t1 | MTR_7g108210 | 33.663 | 101 | 66 | 1 | 3 | 102 | 1 | 101 | 1.15e-13 | 62.0 |
| MS.gene29979.t1 | MTR_7g108200 | 34.043 | 94 | 62 | 0 | 3 | 96 | 1 | 94 | 2.27e-13 | 61.2 |
| MS.gene29979.t1 | MTR_1g015890 | 33.000 | 100 | 65 | 1 | 5 | 102 | 48 | 147 | 4.68e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29979.t1 | AT5G40370 | 73.832 | 107 | 28 | 0 | 1 | 107 | 1 | 107 | 7.03e-58 | 174 |
| MS.gene29979.t1 | AT5G63030 | 67.961 | 103 | 33 | 0 | 5 | 107 | 21 | 123 | 3.44e-48 | 150 |
| MS.gene29979.t1 | AT5G40370 | 72.527 | 91 | 25 | 0 | 17 | 107 | 42 | 132 | 1.45e-47 | 149 |
| MS.gene29979.t1 | AT2G20270 | 51.485 | 101 | 48 | 1 | 7 | 106 | 79 | 179 | 2.36e-27 | 99.0 |
| MS.gene29979.t1 | AT5G20500 | 46.809 | 94 | 50 | 0 | 7 | 100 | 36 | 129 | 6.82e-27 | 96.7 |
| MS.gene29979.t1 | AT1G77370 | 44.444 | 90 | 50 | 0 | 10 | 99 | 41 | 130 | 1.64e-24 | 90.5 |
| MS.gene29979.t1 | AT4G28730 | 43.564 | 101 | 56 | 1 | 7 | 106 | 74 | 174 | 8.91e-24 | 89.7 |
| MS.gene29979.t1 | AT2G20270 | 40.625 | 128 | 48 | 1 | 7 | 106 | 79 | 206 | 7.04e-23 | 88.2 |
| MS.gene29979.t1 | AT4G15700 | 44.792 | 96 | 53 | 0 | 7 | 102 | 5 | 100 | 1.98e-20 | 79.3 |
| MS.gene29979.t1 | AT4G15680 | 41.000 | 100 | 59 | 0 | 3 | 102 | 1 | 100 | 2.38e-19 | 76.6 |
| MS.gene29979.t1 | AT4G15690 | 41.000 | 100 | 59 | 0 | 3 | 102 | 1 | 100 | 5.86e-19 | 75.5 |
| MS.gene29979.t1 | AT4G15670 | 40.000 | 100 | 60 | 0 | 3 | 102 | 1 | 100 | 6.40e-19 | 75.5 |
| MS.gene29979.t1 | AT4G15660 | 40.000 | 100 | 60 | 0 | 3 | 102 | 1 | 100 | 8.67e-19 | 75.1 |
| MS.gene29979.t1 | AT1G77370 | 34.483 | 116 | 50 | 1 | 10 | 99 | 41 | 156 | 1.07e-18 | 76.3 |
| MS.gene29979.t1 | AT5G18600 | 40.000 | 95 | 57 | 0 | 8 | 102 | 6 | 100 | 1.33e-18 | 74.7 |
| MS.gene29979.t1 | AT3G62930 | 38.000 | 100 | 62 | 0 | 3 | 102 | 1 | 100 | 5.28e-18 | 73.2 |
| MS.gene29979.t1 | AT1G03020 | 38.000 | 100 | 62 | 0 | 3 | 102 | 1 | 100 | 4.25e-17 | 70.9 |
| MS.gene29979.t1 | AT3G21460 | 38.947 | 95 | 58 | 0 | 8 | 102 | 6 | 100 | 4.02e-16 | 68.2 |
| MS.gene29979.t1 | AT2G47880 | 36.000 | 100 | 64 | 0 | 3 | 102 | 1 | 100 | 2.60e-15 | 66.2 |
| MS.gene29979.t1 | AT5G14070 | 37.037 | 108 | 60 | 1 | 3 | 102 | 31 | 138 | 2.79e-15 | 67.0 |
| MS.gene29979.t1 | AT4G33040 | 35.294 | 102 | 62 | 1 | 5 | 102 | 41 | 142 | 3.35e-15 | 67.0 |
| MS.gene29979.t1 | AT3G62950 | 33.663 | 101 | 66 | 1 | 3 | 102 | 1 | 101 | 1.23e-14 | 64.3 |
| MS.gene29979.t1 | AT3G62960 | 36.170 | 94 | 60 | 0 | 3 | 96 | 1 | 94 | 1.97e-14 | 63.9 |
| MS.gene29979.t1 | AT4G28730 | 46.269 | 67 | 35 | 1 | 7 | 72 | 74 | 140 | 2.27e-14 | 64.7 |
| MS.gene29979.t1 | AT1G06830 | 36.170 | 94 | 60 | 0 | 3 | 96 | 1 | 94 | 3.55e-14 | 63.2 |
| MS.gene29979.t1 | AT2G30540 | 37.234 | 94 | 59 | 0 | 3 | 96 | 1 | 94 | 7.47e-14 | 62.4 |
| MS.gene29979.t1 | AT2G47870 | 30.693 | 101 | 69 | 1 | 3 | 102 | 1 | 101 | 8.53e-14 | 62.4 |
| MS.gene29979.t1 | AT3G02000 | 37.736 | 106 | 60 | 1 | 3 | 102 | 29 | 134 | 5.61e-13 | 60.8 |
| MS.gene29979.t1 | AT5G11930 | 32.323 | 99 | 57 | 3 | 5 | 102 | 57 | 146 | 6.44e-11 | 55.8 |
Find 32 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAACTCTTCACTGATT+TGG | 0.249041 | 7.1:+60731925 | MS.gene29979:CDS |
| ACATCTGCTGGAGCTATTTC+CGG | 0.264150 | 7.1:+60734067 | MS.gene29979:CDS |
| AAGAAACTCTTCACTGATTT+GGG | 0.299250 | 7.1:+60731926 | MS.gene29979:CDS |
| CGGTCCTCTGACCAGTCCAC+TGG | 0.398861 | 7.1:-60733672 | None:intergenic |
| TTTCTTCACTTGAACGCAAA+AGG | 0.401883 | 7.1:-60731909 | None:intergenic |
| GACACGATCTCCTTTGCCTT+TGG | 0.420598 | 7.1:-60731731 | None:intergenic |
| GTACCCCTGCTGACATCTGC+TGG | 0.425056 | 7.1:+60734055 | MS.gene29979:CDS |
| TCCACTGGGCTAATGCTGCC+TGG | 0.439792 | 7.1:-60733657 | None:intergenic |
| CCTGAAAACAACGACGGGAT+TGG | 0.458655 | 7.1:-60731756 | None:intergenic |
| TAGCTCCAGCAGATGTCAGC+AGG | 0.465614 | 7.1:-60734060 | None:intergenic |
| TCATCTTTATGAGGTTGAAC+CGG | 0.477995 | 7.1:-60734086 | None:intergenic |
| AACAACTAACTTGCAGAACC+AGG | 0.482285 | 7.1:+60734024 | MS.gene29979:CDS |
| AAACCAAGCTCATCTTTATG+AGG | 0.483988 | 7.1:-60734095 | None:intergenic |
| TTCTTCACTTGAACGCAAAA+GGG | 0.501319 | 7.1:-60731908 | None:intergenic |
| AGCTGATGGAAGTGAGATCC+AGG | 0.502280 | 7.1:+60733639 | MS.gene29979:intron |
| ATTGGCGGAAACCACATTGG+CGG | 0.544707 | 7.1:+60733709 | MS.gene29979:CDS |
| GCAGGGGTACCAACTTGCCC+TGG | 0.558407 | 7.1:-60734042 | None:intergenic |
| GCAGCATTAGCCCAGTGGAC+TGG | 0.561864 | 7.1:+60733661 | MS.gene29979:CDS |
| CTTGCAGAACCAGGGCAAGT+TGG | 0.564190 | 7.1:+60734033 | MS.gene29979:CDS |
| ACATTCAGAATCAAGTTCAA+CGG | 0.570967 | 7.1:-60731963 | None:intergenic |
| GGTCCTCTGACCAGTCCACT+GGG | 0.581734 | 7.1:-60733671 | None:intergenic |
| TTTATTGGCGGAAACCACAT+TGG | 0.582108 | 7.1:+60733706 | MS.gene29979:CDS |
| TAGCAAAATGGCACTACCAA+AGG | 0.597425 | 7.1:+60731715 | None:intergenic |
| AGTTACCTGAAAACAACGAC+GGG | 0.599879 | 7.1:-60731761 | None:intergenic |
| AGCTCCAGCAGATGTCAGCA+GGG | 0.606978 | 7.1:-60734059 | None:intergenic |
| TAGCCCAGTGGACTGGTCAG+AGG | 0.617235 | 7.1:+60733668 | MS.gene29979:CDS |
| AATGGCACTACCAAAGGCAA+AGG | 0.621312 | 7.1:+60731721 | None:intergenic |
| TCCAGGCAGCATTAGCCCAG+TGG | 0.640066 | 7.1:+60733656 | MS.gene29979:CDS |
| ACAACTAACTTGCAGAACCA+GGG | 0.651856 | 7.1:+60734025 | MS.gene29979:CDS |
| TACAGTCACAGCCGCCAATG+TGG | 0.654629 | 7.1:-60733720 | None:intergenic |
| GAGTTACCTGAAAACAACGA+CGG | 0.699277 | 7.1:-60731762 | None:intergenic |
| GCTCCAGCAGATGTCAGCAG+GGG | 0.702458 | 7.1:-60734058 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTAAATAAATAAA+AGG | - | chr7.1:60732003-60732022 | None:intergenic | 0.0% |
| !!! | AGAATACTTTATTATATTTT+AGG | + | chr7.1:60732050-60732069 | MS.gene29979:intron | 10.0% |
| !!! | GAATACTTTATTATATTTTA+GGG | + | chr7.1:60732051-60732070 | MS.gene29979:intron | 10.0% |
| !! | TTATTATTCAAAAACTAAAG+TGG | - | chr7.1:60732146-60732165 | None:intergenic | 15.0% |
| !!! | ATAATTGATTTTGATATGTT+TGG | + | chr7.1:60732252-60732271 | MS.gene29979:intron | 15.0% |
| !!! | CTTTAGTTTTTGAATAATAA+TGG | + | chr7.1:60732146-60732165 | MS.gene29979:intron | 15.0% |
| !!! | TAATTGATTTTGATATGTTT+GGG | + | chr7.1:60732253-60732272 | MS.gene29979:intron | 15.0% |
| !!! | TGTTTTTATTTATTTCATTG+AGG | - | chr7.1:60732586-60732605 | None:intergenic | 15.0% |
| !! | AGAACATAAGAAAAATGAAT+CGG | - | chr7.1:60732443-60732462 | None:intergenic | 20.0% |
| !! | CATTAAGTAGTAATTACAAT+AGG | - | chr7.1:60733066-60733085 | None:intergenic | 20.0% |
| !! | TCAACAGAAAAAAAAAATGA+AGG | - | chr7.1:60731801-60731820 | None:intergenic | 20.0% |
| !!! | AACATTAATTTTGACATGTT+TGG | - | chr7.1:60732858-60732877 | None:intergenic | 20.0% |
| !!! | ATAATTTTCACTTAGTCATA+TGG | + | chr7.1:60733471-60733490 | MS.gene29979:intron | 20.0% |
| !!! | CAAGTTAGAATCAATTTTAA+AGG | + | chr7.1:60732808-60732827 | MS.gene29979:intron | 20.0% |
| !!! | TAGTTTTTGAATAATAATGG+TGG | + | chr7.1:60732149-60732168 | MS.gene29979:intron | 20.0% |
| !!! | TTTGAATATTTTGTGAACAT+AGG | + | chr7.1:60732925-60732944 | MS.gene29979:intron | 20.0% |
| ! | AAAACCATAAAATACACACA+AGG | - | chr7.1:60733541-60733560 | None:intergenic | 25.0% |
| ! | AATAAATGAAACCAGTGATT+AGG | - | chr7.1:60733969-60733988 | None:intergenic | 25.0% |
| ! | ATCATGCAAATAAAGTGATT+AGG | - | chr7.1:60733148-60733167 | None:intergenic | 25.0% |
| ! | GAACATAAGAAAAATGAATC+GGG | - | chr7.1:60732442-60732461 | None:intergenic | 25.0% |
| ! | GATTATCTAGAAAACAACTA+TGG | - | chr7.1:60733442-60733461 | None:intergenic | 25.0% |
| ! | TATTCAAAATGAAGTGTGTT+TGG | - | chr7.1:60732913-60732932 | None:intergenic | 25.0% |
| !! | ATTTCCTTGTGTGTATTTTA+TGG | + | chr7.1:60733534-60733553 | MS.gene29979:intron | 25.0% |
| !! | GTTTTGTATTATTCATGATG+AGG | - | chr7.1:60732631-60732650 | None:intergenic | 25.0% |
| !! | TAAGTGTCATATGTTGTTTA+AGG | + | chr7.1:60733010-60733029 | MS.gene29979:intron | 25.0% |
| !! | TAATAAAGTATTCTCAGAAG+AGG | - | chr7.1:60732044-60732063 | None:intergenic | 25.0% |
| !! | TTAATGTTATGCATCACTTT+TGG | + | chr7.1:60732870-60732889 | MS.gene29979:intron | 25.0% |
| !!! | ACTCAATTTTCTAGTCAAAT+TGG | + | chr7.1:60732605-60732624 | MS.gene29979:intron | 25.0% |
| !!! | TCACTTTATTTGCATGATTT+TGG | + | chr7.1:60733150-60733169 | MS.gene29979:intron | 25.0% |
| AAAAATGAATCGGGTGAAAA+TGG | - | chr7.1:60732433-60732452 | None:intergenic | 30.0% | |
| ACATTCAGAATCAAGTTCAA+CGG | - | chr7.1:60731966-60731985 | None:intergenic | 30.0% | |
| CTGTAGAATTCACTAGTAAT+TGG | + | chr7.1:60733511-60733530 | MS.gene29979:intron | 30.0% | |
| GACAAAACACATAGAAATCA+TGG | - | chr7.1:60733576-60733595 | None:intergenic | 30.0% | |
| GTCATAAAATCAAACCAACA+CGG | - | chr7.1:60732658-60732677 | None:intergenic | 30.0% | |
| TACAAGTGATTCACTTTGTT+TGG | + | chr7.1:60732109-60732128 | MS.gene29979:intron | 30.0% | |
| TTTCAGTAAAATGTGTACGA+AGG | + | chr7.1:60733299-60733318 | MS.gene29979:intron | 30.0% | |
| TTTCCGCCAATAAAAACATT+TGG | - | chr7.1:60733700-60733719 | None:intergenic | 30.0% | |
| ! | CAAACAACATTTTACATGTG+AGG | + | chr7.1:60732526-60732545 | MS.gene29979:intron | 30.0% |
| ! | TTGATATGTTTGGGTGTTAT+CGG | + | chr7.1:60732262-60732281 | MS.gene29979:intron | 30.0% |
| ! | TTGGTGTGTATTTTGTTACT+GGG | + | chr7.1:60733169-60733188 | MS.gene29979:intron | 30.0% |
| !! | AAGAAACTCTTCACTGATTT+GGG | + | chr7.1:60731926-60731945 | MS.gene29979:CDS | 30.0% |
| !! | CAACGCTGATTTGTTTAATT+CGG | + | chr7.1:60731841-60731860 | MS.gene29979:intron | 30.0% |
| !! | TTTGGTGTGTATTTTGTTAC+TGG | + | chr7.1:60733168-60733187 | MS.gene29979:intron | 30.0% |
| !!! | AGTTGTTTTTGGTTAAGTGT+TGG | + | chr7.1:60733242-60733261 | MS.gene29979:intron | 30.0% |
| AATACAAAACAACTCCGTGT+TGG | + | chr7.1:60732641-60732660 | MS.gene29979:intron | 35.0% | |
| AATCACTCTGCTTCATTTAC+TGG | + | chr7.1:60733333-60733352 | MS.gene29979:intron | 35.0% | |
| ACATCACAAACTCATACCAA+AGG | - | chr7.1:60732498-60732517 | None:intergenic | 35.0% | |
| CGAACATTAGTAACCTATGT+TGG | + | chr7.1:60733383-60733402 | MS.gene29979:intron | 35.0% | |
| GCCAATAAAAACATTTGGCA+CGG | - | chr7.1:60733695-60733714 | None:intergenic | 35.0% | |
| TAGTAACCTATGTTGGATCA+GGG | + | chr7.1:60733390-60733409 | MS.gene29979:intron | 35.0% | |
| TGCATAATGTCAAACCACTT+CGG | - | chr7.1:60733620-60733639 | None:intergenic | 35.0% | |
| TTAGTAACCTATGTTGGATC+AGG | + | chr7.1:60733389-60733408 | MS.gene29979:intron | 35.0% | |
| TTCTTCACTTGAACGCAAAA+GGG | - | chr7.1:60731911-60731930 | None:intergenic | 35.0% | |
| TTTACATGTGAGGTTATAGC+TGG | + | chr7.1:60732536-60732555 | MS.gene29979:intron | 35.0% | |
| TTTCTTCACTTGAACGCAAA+AGG | - | chr7.1:60731912-60731931 | None:intergenic | 35.0% | |
| TTTGTGAACATAGGTTTCAC+TGG | + | chr7.1:60732934-60732953 | MS.gene29979:intron | 35.0% | |
| ! | ATGAAGTGTGTTTGGTTTCA+TGG | - | chr7.1:60732905-60732924 | None:intergenic | 35.0% |
| ! | GAAGAAACTCTTCACTGATT+TGG | + | chr7.1:60731925-60731944 | MS.gene29979:CDS | 35.0% |
| ! | GATTCACTTTGTTTGGATCA+CGG | + | chr7.1:60732116-60732135 | MS.gene29979:intron | 35.0% |
| !! | ACCGTGCCAAATGTTTTTAT+TGG | + | chr7.1:60733691-60733710 | MS.gene29979:CDS | 35.0% |
| !! | GTGCCAAATGTTTTTATTGG+CGG | + | chr7.1:60733694-60733713 | MS.gene29979:CDS | 35.0% |
| !!! | TTTTTTCTACGATTCACGGA+TGG | - | chr7.1:60733783-60733802 | None:intergenic | 35.0% |
| AACAATCCCTGATCCAACAT+AGG | - | chr7.1:60733399-60733418 | None:intergenic | 40.0% | |
| ACAAACTCATACCAAAGGTG+GGG | - | chr7.1:60732493-60732512 | None:intergenic | 40.0% | |
| ACCAAGTGAATTAACCGAAG+TGG | + | chr7.1:60733603-60733622 | MS.gene29979:intron | 40.0% | |
| ACCACTTCGGTTAATTCACT+TGG | - | chr7.1:60733607-60733626 | None:intergenic | 40.0% | |
| AGATTTAGTGTACGTCACGA+TGG | - | chr7.1:60732196-60732215 | None:intergenic | 40.0% | |
| AGTTACCTGAAAACAACGAC+GGG | - | chr7.1:60731764-60731783 | None:intergenic | 40.0% | |
| ATCGTGACGTACACTAAATC+TGG | + | chr7.1:60732195-60732214 | MS.gene29979:intron | 40.0% | |
| CACAAACTCATACCAAAGGT+GGG | - | chr7.1:60732494-60732513 | None:intergenic | 40.0% | |
| CATGTTTGGATGATGTCGAT+TGG | - | chr7.1:60732844-60732863 | None:intergenic | 40.0% | |
| CCGTGAATCGTAGAAAAAAG+CGG | + | chr7.1:60733784-60733803 | MS.gene29979:intron | 40.0% | |
| GAAGCAGAGTGATTAACTGA+AGG | - | chr7.1:60733327-60733346 | None:intergenic | 40.0% | |
| GAGTTACCTGAAAACAACGA+CGG | - | chr7.1:60731765-60731784 | None:intergenic | 40.0% | |
| GTTTGACATTATGCAGCTGA+TGG | + | chr7.1:60733625-60733644 | MS.gene29979:intron | 40.0% | |
| TAAAGCAGAACAAATGCCCT+GGG | - | chr7.1:60732992-60733011 | None:intergenic | 40.0% | |
| TAGACCTTCCTCTCATTACA+GGG | + | chr7.1:60733214-60733233 | MS.gene29979:intron | 40.0% | |
| TATGCGAGTTTCCTAATCAC+TGG | + | chr7.1:60733955-60733974 | MS.gene29979:intron | 40.0% | |
| TCACAAACTCATACCAAAGG+TGG | - | chr7.1:60732495-60732514 | None:intergenic | 40.0% | |
| TCGTGACGTACACTAAATCT+GGG | + | chr7.1:60732196-60732215 | MS.gene29979:intron | 40.0% | |
| TTAAAGCAGAACAAATGCCC+TGG | - | chr7.1:60732993-60733012 | None:intergenic | 40.0% | |
| TTTATTGGCGGAAACCACAT+TGG | + | chr7.1:60733706-60733725 | MS.gene29979:CDS | 40.0% | |
| ! | AACAACTAACTTGCAGAACC+AGG | + | chr7.1:60734024-60734043 | MS.gene29979:CDS | 40.0% |
| ! | ACAACTAACTTGCAGAACCA+GGG | + | chr7.1:60734025-60734044 | MS.gene29979:CDS | 40.0% |
| ! | AGTGTGTTTGGTTTCATGGT+AGG | - | chr7.1:60732901-60732920 | None:intergenic | 40.0% |
| ! | CGATGGATTTGTCAGAATCA+CGG | - | chr7.1:60732179-60732198 | None:intergenic | 40.0% |
| ! | CTAAATCTGGGCGACAATTT+TGG | + | chr7.1:60732208-60732227 | MS.gene29979:intron | 40.0% |
| ! | GTGTGTTTGGTTTCATGGTA+GGG | - | chr7.1:60732900-60732919 | None:intergenic | 40.0% |
| !! | ACAGGGTTCAGAGTTGTTTT+TGG | + | chr7.1:60733231-60733250 | MS.gene29979:intron | 40.0% |
| !!! | CCGCTTTTTTCTACGATTCA+CGG | - | chr7.1:60733787-60733806 | None:intergenic | 40.0% |
| ACTCTGAACCCTGTAATGAG+AGG | - | chr7.1:60733225-60733244 | None:intergenic | 45.0% | |
| CAAACATTTGTCCCCACCTT+TGG | + | chr7.1:60732479-60732498 | MS.gene29979:intron | 45.0% | |
| CTAGACCTTCCTCTCATTAC+AGG | + | chr7.1:60733213-60733232 | MS.gene29979:intron | 45.0% | |
| CTGCTTCATTTACTGGCAGA+AGG | + | chr7.1:60733340-60733359 | MS.gene29979:intron | 45.0% | |
| TGAACCCTGTAATGAGAGGA+AGG | - | chr7.1:60733221-60733240 | None:intergenic | 45.0% | |
| ! | ACATCTGCTGGAGCTATTTC+CGG | + | chr7.1:60734067-60734086 | MS.gene29979:CDS | 45.0% |
| !!! | TTTAATTTTAAACTATAATT+TGG | + | chr7.1:60732311-60732330 | MS.gene29979:intron | 5.0% |
| AGCTGATGGAAGTGAGATCC+AGG | + | chr7.1:60733639-60733658 | MS.gene29979:intron | 50.0% | |
| ATTGGCGGAAACCACATTGG+CGG | + | chr7.1:60733709-60733728 | MS.gene29979:CDS | 50.0% | |
| CCTGAAAACAACGACGGGAT+TGG | - | chr7.1:60731759-60731778 | None:intergenic | 50.0% | |
| GACACGATCTCCTTTGCCTT+TGG | - | chr7.1:60731734-60731753 | None:intergenic | 50.0% | |
| GCAAGATGACTGCAAACCCA+GGG | + | chr7.1:60732973-60732992 | MS.gene29979:intron | 50.0% | |
| GGGTTTGCAGTCATCTTGCA+GGG | - | chr7.1:60732972-60732991 | None:intergenic | 50.0% | |
| TGCAAGATGACTGCAAACCC+AGG | + | chr7.1:60732972-60732991 | MS.gene29979:intron | 50.0% | |
| TGGGTTTGCAGTCATCTTGC+AGG | - | chr7.1:60732973-60732992 | None:intergenic | 50.0% | |
| !! | CCAATCCCGTCGTTGTTTTC+AGG | + | chr7.1:60731756-60731775 | MS.gene29979:CDS | 50.0% |
| AGCTCCAGCAGATGTCAGCA+GGG | - | chr7.1:60734062-60734081 | None:intergenic | 55.0% | |
| CTTGCAGAACCAGGGCAAGT+TGG | + | chr7.1:60734033-60734052 | MS.gene29979:CDS | 55.0% | |
| TACAGTCACAGCCGCCAATG+TGG | - | chr7.1:60733723-60733742 | None:intergenic | 55.0% | |
| TAGCTCCAGCAGATGTCAGC+AGG | - | chr7.1:60734063-60734082 | None:intergenic | 55.0% | |
| GCAGCATTAGCCCAGTGGAC+TGG | + | chr7.1:60733661-60733680 | MS.gene29979:CDS | 60.0% | |
| GCTCCAGCAGATGTCAGCAG+GGG | - | chr7.1:60734061-60734080 | None:intergenic | 60.0% | |
| GGTCCTCTGACCAGTCCACT+GGG | - | chr7.1:60733674-60733693 | None:intergenic | 60.0% | |
| GTACCCCTGCTGACATCTGC+TGG | + | chr7.1:60734055-60734074 | MS.gene29979:CDS | 60.0% | |
| TCCACTGGGCTAATGCTGCC+TGG | - | chr7.1:60733660-60733679 | None:intergenic | 60.0% | |
| TCCAGGCAGCATTAGCCCAG+TGG | + | chr7.1:60733656-60733675 | MS.gene29979:CDS | 60.0% | |
| !! | TAGCCCAGTGGACTGGTCAG+AGG | + | chr7.1:60733668-60733687 | MS.gene29979:CDS | 60.0% |
| CGGTCCTCTGACCAGTCCAC+TGG | - | chr7.1:60733675-60733694 | None:intergenic | 65.0% | |
| !! | GCAGGGGTACCAACTTGCCC+TGG | - | chr7.1:60734045-60734064 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 60731722 | 60734102 | 60731722 | ID=MS.gene29979 |
| chr7.1 | mRNA | 60731722 | 60734102 | 60731722 | ID=MS.gene29979.t1;Parent=MS.gene29979 |
| chr7.1 | exon | 60731722 | 60731777 | 60731722 | ID=MS.gene29979.t1.exon1;Parent=MS.gene29979.t1 |
| chr7.1 | CDS | 60731722 | 60731777 | 60731722 | ID=cds.MS.gene29979.t1;Parent=MS.gene29979.t1 |
| chr7.1 | exon | 60731895 | 60731983 | 60731895 | ID=MS.gene29979.t1.exon2;Parent=MS.gene29979.t1 |
| chr7.1 | CDS | 60731895 | 60731983 | 60731895 | ID=cds.MS.gene29979.t1;Parent=MS.gene29979.t1 |
| chr7.1 | exon | 60733641 | 60733739 | 60733641 | ID=MS.gene29979.t1.exon3;Parent=MS.gene29979.t1 |
| chr7.1 | CDS | 60733641 | 60733739 | 60733641 | ID=cds.MS.gene29979.t1;Parent=MS.gene29979.t1 |
| chr7.1 | exon | 60734023 | 60734102 | 60734023 | ID=MS.gene29979.t1.exon4;Parent=MS.gene29979.t1 |
| chr7.1 | CDS | 60734023 | 60734102 | 60734023 | ID=cds.MS.gene29979.t1;Parent=MS.gene29979.t1 |
| Gene Sequence |
| Protein sequence |
