AlfalfaGEDB | MS.gene006982

M. sativa cultivar XinJiangDaYe / MS.gene006982

KEGG: K03676
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006982.t1	XP_003625872.1	98.1	103	2	0	1	103	1	103	1.70E-52	214.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006982.t1	Q9LYC6	74.5	102	26	0	1	102	1	102	3.2e-39	162.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006982.t1	G7KQZ8	98.1	103	2	0	1	103	1	103	1.2e-52	214.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene006983	MS.gene006982	PPI
MS.gene006982	MS.gene20701	PPI
MS.gene006980	MS.gene006982	PPI
MS.gene041518	MS.gene006982	PPI
MS.gene035290	MS.gene006982	PPI
MS.gene07181	MS.gene006982	PPI
MS.gene87167	MS.gene006982	PPI
MS.gene036527	MS.gene006982	PPI
MS.gene59643	MS.gene006982	PPI
MS.gene005629	MS.gene006982	PPI
MS.gene23008	MS.gene006982	PPI
MS.gene03022	MS.gene006982	PPI
MS.gene70642	MS.gene006982	PPI
MS.gene006982	MS.gene07181	PPI
MS.gene20703	MS.gene006982	PPI
MS.gene005628	MS.gene006982	PPI
MS.gene07179	MS.gene006982	PPI
MS.gene07183	MS.gene006982	PPI
MS.gene25976	MS.gene006982	PPI
MS.gene041521	MS.gene006982	PPI
MS.gene006982	MS.gene005628	PPI
MS.gene23007	MS.gene006982	PPI
MS.gene005631	MS.gene006982	PPI
MS.gene58938	MS.gene006982	PPI
MS.gene036524	MS.gene006982	PPI
MS.gene022312	MS.gene006982	PPI
MS.gene035294	MS.gene006982	PPI
MS.gene70641	MS.gene006982	PPI
MS.gene005632	MS.gene006982	PPI
MS.gene58935	MS.gene006982	PPI
MS.gene07180	MS.gene006982	PPI
MS.gene23009	MS.gene006982	PPI
MS.gene041519	MS.gene006982	PPI
MS.gene035291	MS.gene006982	PPI
MS.gene23005	MS.gene006982	PPI
MS.gene29370	MS.gene006982	PPI
MS.gene58937	MS.gene006982	PPI
MS.gene29371	MS.gene006982	PPI
MS.gene03023	MS.gene006982	PPI
MS.gene03026	MS.gene006982	PPI
MS.gene005630	MS.gene006982	PPI
MS.gene20704	MS.gene006982	PPI
MS.gene07182	MS.gene006982	PPI
MS.gene52509	MS.gene006982	PPI
MS.gene20705	MS.gene006982	PPI
MS.gene022311	MS.gene006982	PPI
MS.gene03024	MS.gene006982	PPI
MS.gene005633	MS.gene006982	PPI
MS.gene050229	MS.gene006982	PPI
MS.gene006982	MS.gene005631	PPI
MS.gene29979	MS.gene006982	PPI
MS.gene20701	MS.gene006982	PPI
MS.gene036528	MS.gene006982	PPI
MS.gene006984	MS.gene006982	PPI
MS.gene20702	MS.gene006982	PPI
MS.gene25978	MS.gene006982	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006982.t1	MTR_7g108220	98.058	103	2	0	1	103	1	103	3.68e-74	214
MS.gene006982.t1	MTR_7g108210	97.087	103	3	0	1	103	1	103	1.10e-73	213
MS.gene006982.t1	MTR_1g088910	88.350	103	11	1	1	103	1	102	3.30e-63	187
MS.gene006982.t1	MTR_2g019950	64.078	103	36	1	1	103	1	102	4.08e-46	144
MS.gene006982.t1	MTR_2g019900	55.882	102	44	1	1	102	1	101	2.64e-36	119
MS.gene006982.t1	MTR_4g119050	50.485	103	51	0	1	103	1	103	2.57e-33	111
MS.gene006982.t1	MTR_4g119030	50.485	103	51	0	1	103	1	103	2.57e-33	111
MS.gene006982.t1	MTR_4g119040	50.485	103	51	0	1	103	1	103	2.57e-33	111
MS.gene006982.t1	MTR_7g108200	53.684	95	43	1	1	95	1	94	1.20e-32	110
MS.gene006982.t1	MTR_1g088920	51.579	95	45	1	1	95	1	94	3.52e-31	106
MS.gene006982.t1	MTR_1g088925	49.474	95	47	1	1	95	1	94	8.45e-31	105
MS.gene006982.t1	MTR_7g026770	48.544	103	53	0	1	103	22	124	2.00e-30	109
MS.gene006982.t1	MTR_7g022550	44.660	103	57	0	1	103	30	132	1.40e-28	100
MS.gene006982.t1	MTR_7g108250	47.573	103	53	1	1	103	1	102	1.41e-28	99.8
MS.gene006982.t1	MTR_7g022690	44.660	103	57	0	1	103	30	132	1.63e-28	100
MS.gene006982.t1	MTR_7g022710	44.660	103	57	0	1	103	30	132	4.69e-28	99.4
MS.gene006982.t1	MTR_1g088905	45.631	103	55	1	1	103	1	102	3.08e-27	96.3
MS.gene006982.t1	MTR_7g108260	42.718	103	58	1	1	103	1	102	3.55e-25	90.9
MS.gene006982.t1	MTR_1g088895	45.000	100	54	1	4	103	4	102	2.21e-22	84.0
MS.gene006982.t1	MTR_2g048970	40.000	105	60	1	2	103	29	133	2.76e-20	79.3
MS.gene006982.t1	MTR_2g014760	35.294	102	65	1	2	103	27	127	5.34e-19	75.9
MS.gene006982.t1	MTR_3g077570	39.604	101	60	1	1	101	18	117	6.57e-19	75.5
MS.gene006982.t1	MTR_3g077560	37.624	101	62	1	1	101	21	120	1.61e-16	69.7
MS.gene006982.t1	MTR_2g090755	31.731	104	63	2	4	103	41	140	2.90e-16	69.3
MS.gene006982.t1	MTR_7g035245	36.634	101	63	1	1	101	3	102	2.29e-15	66.2
MS.gene006982.t1	MTR_1g015890	35.294	102	65	1	3	103	48	149	5.66e-15	66.2
MS.gene006982.t1	MTR_1g069255	36.000	100	62	2	2	100	84	182	6.07e-14	64.3
MS.gene006982.t1	MTR_4g079110	33.333	99	64	2	6	103	58	155	2.07e-13	62.4
MS.gene006982.t1	MTR_5g077550	33.010	103	68	1	2	103	21	123	5.30e-11	55.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006982.t1	AT3G62950	73.786	103	27	0	1	103	1	103	2.76e-54	164
MS.gene006982.t1	AT2G47870	72.816	103	28	0	1	103	1	103	5.78e-51	156
MS.gene006982.t1	AT3G21460	57.282	103	43	1	1	103	1	102	1.16e-41	132
MS.gene006982.t1	AT4G15700	49.515	103	51	1	1	103	1	102	3.88e-33	111
MS.gene006982.t1	AT4G15690	48.544	103	52	1	1	103	1	102	8.26e-33	110
MS.gene006982.t1	AT5G18600	50.980	102	49	1	1	102	1	101	1.21e-32	110
MS.gene006982.t1	AT4G15670	47.573	103	53	1	1	103	1	102	1.31e-32	109
MS.gene006982.t1	AT4G15680	47.573	103	53	1	1	103	1	102	2.66e-32	108
MS.gene006982.t1	AT4G15660	46.602	103	54	1	1	103	1	102	4.36e-32	108
MS.gene006982.t1	AT2G47880	45.631	103	55	1	1	103	1	102	1.19e-29	102
MS.gene006982.t1	AT5G14070	43.636	110	55	1	1	103	31	140	2.17e-28	100
MS.gene006982.t1	AT3G62960	48.421	95	48	1	1	95	1	94	8.78e-28	97.8
MS.gene006982.t1	AT3G62930	49.020	102	51	1	1	102	1	101	1.58e-27	97.1
MS.gene006982.t1	AT2G30540	45.000	100	54	1	1	100	1	99	4.63e-27	95.9
MS.gene006982.t1	AT1G06830	49.451	91	45	1	1	91	1	90	5.97e-27	95.5
MS.gene006982.t1	AT1G03020	47.573	103	53	1	1	103	1	102	7.65e-27	95.5
MS.gene006982.t1	AT3G02000	44.340	106	54	1	3	103	31	136	4.66e-24	89.4
MS.gene006982.t1	AT1G28480	30.476	105	70	1	2	103	33	137	8.77e-17	70.9
MS.gene006982.t1	AT4G33040	33.333	105	65	2	3	103	41	144	7.62e-16	68.6
MS.gene006982.t1	AT5G40370	34.653	101	65	1	1	101	3	102	1.72e-15	66.6
MS.gene006982.t1	AT5G63030	37.624	101	62	1	1	101	19	118	4.99e-15	65.9
MS.gene006982.t1	AT5G20500	40.426	94	55	1	2	95	33	125	2.06e-13	62.0
MS.gene006982.t1	AT5G11930	30.693	101	59	2	3	102	57	147	3.31e-12	59.3
MS.gene006982.t1	AT4G28730	32.653	98	64	2	2	98	71	167	6.42e-12	58.9
MS.gene006982.t1	AT2G20270	34.000	100	64	2	2	100	76	174	8.21e-12	58.5
MS.gene006982.t1	AT1G77370	37.805	82	50	1	14	95	47	127	2.63e-11	56.2
MS.gene006982.t1	AT5G40370	37.931	87	53	1	15	101	42	127	9.17e-11	55.1

Find 0 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATATGGTAGAGAAATGGAAT+GGG	+	51716:49672-49691	MS.gene006982:CDS	30.0%
	ATCTCTCAAACAAATGCTTA+TGG	+	51716:49798-49817	MS.gene006982:CDS	30.0%
	GAACTAGACAATGATTCATA+TGG	+	51716:49655-49674	MS.gene006982:CDS	30.0%
	TGATTCATATGGTAGAGAAA+TGG	+	51716:49666-49685	MS.gene006982:CDS	30.0%
	TTCATAGGTGGAAAATTTGT+AGG	+	51716:49739-49758	MS.gene006982:CDS	30.0%
!	AAGCAACTTTTCTATGAACT+TGG	+	51716:49613-49632	MS.gene006982:CDS	30.0%
!	ATGAGATATCACATCTTTTG+AGG	-	51716:49767-49786	None:intergenic	30.0%
!	TAATTTTGGATGTAACCCTA+CGG	+	51716:49705-49724	MS.gene006982:CDS	30.0%
	ACAAATGCTTATGGATGCAA+AGG	+	51716:49807-49826	MS.gene006982:CDS	35.0%
	CATATGGTAGAGAAATGGAA+TGG	+	51716:49671-49690	MS.gene006982:CDS	35.0%
	GTGATATCTCATCATGTTGA+TGG	+	51716:49775-49794	MS.gene006982:CDS	35.0%
	TTATGGATGCAAAGGCCATT+TGG	+	51716:49815-49834	MS.gene006982:CDS	40.0%
!	AGAAATGGAATGGGCTTTGA+GGG	+	51716:49681-49700	MS.gene006982:CDS	40.0%
!	TTGTCTAGTTCATACACTGC+AGG	-	51716:49646-49665	None:intergenic	40.0%
	TTTCCACCTATGAACACTGC+TGG	-	51716:49733-49752	None:intergenic	45.0%
!	GAGAAATGGAATGGGCTTTG+AGG	+	51716:49680-49699	MS.gene006982:CDS	45.0%
!!	GAAATGGAATGGGCTTTGAG+GGG	+	51716:49682-49701	MS.gene006982:CDS	45.0%
!!!	TGGGCTTTGAGGGGTAATTT+TGG	+	51716:49691-49710	MS.gene006982:CDS	45.0%
	ACGGTTCCAGCAGTGTTCAT+AGG	+	51716:49724-49743	MS.gene006982:CDS	50.0%
	ATGAACACTGCTGGAACCGT+AGG	-	51716:49724-49743	None:intergenic	50.0%
	GTTCCAGCAGTGTTCATAGG+TGG	+	51716:49727-49746	MS.gene006982:CDS	50.0%
	TGAACACTGCTGGAACCGTA+GGG	-	51716:49723-49742	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
51716	gene	49532	49843	49532	ID=MS.gene006982
51716	mRNA	49532	49843	49532	ID=MS.gene006982.t1;Parent=MS.gene006982
51716	exon	49532	49843	49532	ID=MS.gene006982.t1.exon1;Parent=MS.gene006982.t1
51716	CDS	49532	49843	49532	ID=cds.MS.gene006982.t1;Parent=MS.gene006982.t1

Gene Sequence	>MS.gene006982 ATGGATAGAGTAAAGGATTTAGCATCAAAGAAAGCTGCAGTTATATTTACAAAGAGTTCATGTTACATGTGTCATAGCATCAAGCAACTTTTCTATGAACTTGGAGCAAGTCCTGCAGTGTATGAACTAGACAATGATTCATATGGTAGAGAAATGGAATGGGCTTTGAGGGGTAATTTTGGATGTAACCCTACGGTTCCAGCAGTGTTCATAGGTGGAAAATTTGTAGGATCCTCAAAAGATGTGATATCTCATCATGTTGATGGATCTCTCAAACAAATGCTTATGGATGCAAAGGCCATTTGGTTTTAG
Protein sequence	>MS.gene006982.t1 MDRVKDLASKKAAVIFTKSSCYMCHSIKQLFYELGASPAVYELDNDSYGREMEWALRGNFGCNPTVPAVFIGGKFVGSSKDVISHHVDGSLKQMLMDAKAIWF