AlfalfaGEDB | MS.gene006980

M. sativa cultivar XinJiangDaYe / MS.gene006980

KEGG: K03676
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009055 GO:0009987 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF00462.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006980.t1	XP_003625874.1	100	102	0	0	1	102	1	102	4.60E-50	206.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006980.t1	Q9LYC8	63.7	102	37	0	1	102	1	102	1.5e-33	143.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006980.t1	B7FMW2	100.0	102	0	0	1	102	1	102	3.3e-50	206.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene006980	MS.gene036527	PPI
MS.gene006980	MS.gene29370	PPI
MS.gene022312	MS.gene006980	PPI
MS.gene70642	MS.gene006980	PPI
MS.gene006980	MS.gene006982	PPI
MS.gene006980	MS.gene005628	PPI
MS.gene20703	MS.gene006980	PPI
MS.gene006980	MS.gene035294	PPI
MS.gene006980	MS.gene52509	PPI
MS.gene006980	MS.gene03024	PPI
MS.gene006980	MS.gene005629	PPI
MS.gene006980	MS.gene07183	PPI
MS.gene006980	MS.gene03022	PPI
MS.gene006980	MS.gene58937	PPI
MS.gene23005	MS.gene006980	PPI
MS.gene006980	MS.gene23009	PPI
MS.gene03023	MS.gene006980	PPI
MS.gene006980	MS.gene041519	PPI
MS.gene006980	MS.gene005630	PPI
MS.gene006980	MS.gene25978	PPI
MS.gene005632	MS.gene006980	PPI
MS.gene006980	MS.gene59643	PPI
MS.gene58935	MS.gene006980	PPI
MS.gene006980	MS.gene035291	PPI
MS.gene006980	MS.gene20704	PPI
MS.gene006980	MS.gene58938	PPI
MS.gene036528	MS.gene006980	PPI
MS.gene29371	MS.gene006980	PPI
MS.gene006983	MS.gene006980	PPI
MS.gene006980	MS.gene87167	PPI
MS.gene006980	MS.gene005631	PPI
MS.gene006980	MS.gene29979	PPI
MS.gene006980	MS.gene022311	PPI
MS.gene006980	MS.gene005633	PPI
MS.gene006980	MS.gene041518	PPI
MS.gene006980	MS.gene20702	PPI
MS.gene006980	MS.gene70641	PPI
MS.gene006980	MS.gene006984	PPI
MS.gene006980	MS.gene07179	PPI
MS.gene006980	MS.gene20701	PPI
MS.gene006980	MS.gene07182	PPI
MS.gene006980	MS.gene03026	PPI
MS.gene005633	MS.gene006980	PPI
MS.gene006980	MS.gene050229	PPI
MS.gene006980	MS.gene041521	PPI
MS.gene006980	MS.gene07181	PPI
MS.gene006980	MS.gene23008	PPI
MS.gene25976	MS.gene006980	PPI
MS.gene035290	MS.gene006980	PPI
MS.gene006980	MS.gene07180	PPI
MS.gene23007	MS.gene006980	PPI
MS.gene036524	MS.gene006980	PPI
MS.gene006980	MS.gene20705	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006980.t1	MTR_7g108250	100.000	102	0	0	1	102	1	102	1.04e-72	211
MS.gene006980.t1	MTR_1g088905	76.471	102	24	0	1	102	1	102	6.34e-57	171
MS.gene006980.t1	MTR_2g019900	52.941	102	48	0	1	102	1	102	8.42e-40	127
MS.gene006980.t1	MTR_1g088895	57.843	102	43	0	1	102	1	102	1.60e-39	127
MS.gene006980.t1	MTR_4g119050	55.340	103	45	1	1	102	1	103	1.89e-39	127
MS.gene006980.t1	MTR_4g119030	55.340	103	45	1	1	102	1	103	1.89e-39	127
MS.gene006980.t1	MTR_4g119040	55.340	103	45	1	1	102	1	103	1.89e-39	127
MS.gene006980.t1	MTR_7g108260	56.436	101	44	0	1	101	1	101	1.10e-36	120
MS.gene006980.t1	MTR_2g019950	46.078	102	55	0	1	102	1	102	2.73e-32	108
MS.gene006980.t1	MTR_1g088910	49.020	102	52	0	1	102	1	102	2.62e-30	103
MS.gene006980.t1	MTR_7g108220	49.515	103	51	1	1	102	1	103	1.64e-29	102
MS.gene006980.t1	MTR_7g108210	48.544	103	52	1	1	102	1	103	9.32e-29	100
MS.gene006980.t1	MTR_7g108200	45.263	95	52	0	1	95	1	95	3.82e-26	93.6
MS.gene006980.t1	MTR_1g088920	43.158	95	54	0	1	95	1	95	1.24e-25	92.0
MS.gene006980.t1	MTR_1g088925	41.053	95	56	0	1	95	1	95	1.83e-25	91.7
MS.gene006980.t1	MTR_7g022690	37.864	103	63	1	1	102	30	132	1.59e-23	87.8
MS.gene006980.t1	MTR_7g022550	37.864	103	63	1	1	102	30	132	2.15e-23	87.4
MS.gene006980.t1	MTR_7g022710	35.922	103	65	1	1	102	30	132	4.13e-23	86.7
MS.gene006980.t1	MTR_7g026770	39.806	103	61	1	1	102	22	124	1.30e-22	89.4
MS.gene006980.t1	MTR_2g014760	40.000	100	58	2	4	102	29	127	4.06e-22	84.0
MS.gene006980.t1	MTR_2g048970	40.952	105	58	1	2	102	29	133	9.81e-22	83.2
MS.gene006980.t1	MTR_4g079110	41.837	98	56	1	6	102	58	155	8.77e-21	81.3
MS.gene006980.t1	MTR_2g090755	36.000	100	63	1	4	102	41	140	8.47e-20	78.6
MS.gene006980.t1	MTR_3g077570	37.000	100	63	0	1	100	18	117	1.28e-18	74.7
MS.gene006980.t1	MTR_3g077560	35.000	100	65	0	1	100	21	120	6.32e-17	70.9
MS.gene006980.t1	MTR_1g015890	36.634	101	62	1	4	102	49	149	1.79e-16	70.1
MS.gene006980.t1	MTR_5g077550	35.922	103	64	1	2	102	21	123	1.19e-15	67.4
MS.gene006980.t1	MTR_7g035245	39.362	94	57	0	7	100	9	102	5.16e-15	65.5
MS.gene006980.t1	MTR_1g069255	36.364	99	62	1	2	99	84	182	1.89e-14	65.9
MS.gene006980.t1	MTR_3g104510	33.333	99	60	3	4	101	24	117	4.99e-13	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006980.t1	AT3G62930	63.725	102	37	0	1	102	1	102	1.53e-47	147
MS.gene006980.t1	AT1G03020	57.843	102	43	0	1	102	1	102	9.25e-45	140
MS.gene006980.t1	AT5G18600	56.863	102	44	0	1	102	1	102	3.93e-44	139
MS.gene006980.t1	AT4G15680	53.922	102	47	0	1	102	1	102	1.31e-40	130
MS.gene006980.t1	AT4G15690	53.922	102	47	0	1	102	1	102	1.90e-40	129
MS.gene006980.t1	AT4G15700	52.941	102	48	0	1	102	1	102	3.63e-40	129
MS.gene006980.t1	AT4G15670	50.000	102	51	0	1	102	1	102	3.50e-38	124
MS.gene006980.t1	AT4G15660	50.000	102	51	0	1	102	1	102	4.32e-38	123
MS.gene006980.t1	AT3G21460	44.118	102	57	0	1	102	1	102	7.71e-31	105
MS.gene006980.t1	AT3G62950	43.689	103	57	1	1	102	1	103	2.22e-28	99.4
MS.gene006980.t1	AT2G47870	42.718	103	58	1	1	102	1	103	1.00e-27	97.4
MS.gene006980.t1	AT1G06830	46.316	95	51	0	1	95	1	95	2.50e-27	96.3
MS.gene006980.t1	AT2G30540	45.263	95	52	0	1	95	1	95	9.16e-27	95.1
MS.gene006980.t1	AT5G14070	42.056	107	54	2	4	102	34	140	4.40e-26	94.4
MS.gene006980.t1	AT2G47880	42.574	101	58	0	1	101	1	101	5.09e-26	93.2
MS.gene006980.t1	AT3G62960	42.105	95	55	0	1	95	1	95	4.39e-24	88.2
MS.gene006980.t1	AT3G02000	39.048	105	58	1	4	102	32	136	8.36e-22	83.6
MS.gene006980.t1	AT1G28480	33.019	106	65	2	2	102	33	137	1.11e-18	75.5
MS.gene006980.t1	AT4G33040	36.893	103	61	1	4	102	42	144	5.09e-17	71.6
MS.gene006980.t1	AT5G63030	36.000	100	64	0	1	100	19	118	1.06e-16	70.1
MS.gene006980.t1	AT5G40370	39.000	100	61	0	1	100	3	102	1.59e-16	69.3
MS.gene006980.t1	AT2G20270	37.374	99	61	1	2	99	76	174	1.61e-16	70.9
MS.gene006980.t1	AT1G03850	34.694	98	56	2	7	102	59	150	7.86e-16	68.6
MS.gene006980.t1	AT5G11930	32.292	96	55	3	7	101	61	147	1.95e-14	64.7
MS.gene006980.t1	AT5G40370	40.698	86	51	0	15	100	42	127	5.64e-13	60.8

Find 0 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACTTGATAAAATCACAAAT+GGG	-	51716:34739-34758	MS.gene006980:CDS	20.0%
!!	TATCAAGTTCATAAACAATT+GGG	+	51716:34728-34747	None:intergenic	20.0%
!!	TTATCAAGTTCATAAACAAT+TGG	+	51716:34729-34748	None:intergenic	20.0%
!	GAACTTGATAAAATCACAAA+TGG	-	51716:34738-34757	MS.gene006980:CDS	25.0%
	AAGTTCATAAACAATTGGGT+TGG	+	51716:34724-34743	None:intergenic	30.0%
	TCAATTAGTACCTATGTTGA+AGG	-	51716:34878-34897	MS.gene006980:CDS	30.0%
!!!	ATGAAGGCTCATGATTTTTT+TGG	+	51716:34850-34869	None:intergenic	30.0%
	AAAGTGAGTTGCTTCAAATG+GGG	-	51716:34772-34791	MS.gene006980:CDS	35.0%
	GAAAGTGAGTTGCTTCAAAT+GGG	-	51716:34771-34790	MS.gene006980:CDS	35.0%
	TGAAAGTGAGTTGCTTCAAA+TGG	-	51716:34770-34789	MS.gene006980:CDS	35.0%
	TTCATAGGACAACAATTCAG+AGG	-	51716:34819-34838	MS.gene006980:CDS	35.0%
!	CTAATTGATTCCTCACATGA+AGG	+	51716:34866-34885	None:intergenic	35.0%
	AAATCATGAGCCTTCATGTG+AGG	-	51716:34853-34872	MS.gene006980:CDS	40.0%
	ACATCACTGATACGTAGCTT+TGG	-	51716:34696-34715	MS.gene006980:CDS	40.0%
	ATAGGACAACAATTCAGAGG+TGG	-	51716:34822-34841	MS.gene006980:CDS	40.0%
	ATGAAAACAGCAGGTACACT+TGG	+	51716:34804-34823	None:intergenic	40.0%
	GTATCAGTGATGTTACAGAG+TGG	+	51716:34689-34708	None:intergenic	40.0%
	TGTTGTCCTATGAAAACAGC+AGG	+	51716:34813-34832	None:intergenic	40.0%
!!!	AGTGTACCTGCTGTTTTCAT+AGG	-	51716:34804-34823	MS.gene006980:CDS	40.0%
	CTCTTGCTGAATATCACCAC+TGG	+	51716:34651-34670	None:intergenic	45.0%
	GTACCTATGTTGAAGGATGC+TGG	-	51716:34885-34904	MS.gene006980:CDS	45.0%
	TGAAGGATGCTGGAGCTATA+TGG	-	51716:34895-34914	MS.gene006980:CDS	45.0%
	GACACAGTCACAAGCATGGT+TGG	-	51716:34618-34637	MS.gene006980:CDS	50.0%
	GCTCCAGCATCCTTCAACAT+AGG	+	51716:34891-34910	None:intergenic	50.0%
!!	CATGGTTGGTGAAAAGCCAG+TGG	-	51716:34632-34651	MS.gene006980:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
51716	gene	34615	34923	34615	ID=MS.gene006980
51716	mRNA	34615	34923	34615	ID=MS.gene006980.t1;Parent=MS.gene006980
51716	exon	34615	34923	34615	ID=MS.gene006980.t1.exon1;Parent=MS.gene006980.t1
51716	CDS	34615	34923	34615	ID=cds.MS.gene006980.t1;Parent=MS.gene006980.t1

Gene Sequence	>MS.gene006980 ATGGACACAGTCACAAGCATGGTTGGTGAAAAGCCAGTGGTGATATTCAGCAAGAGTACGTGTTGCTTGAGCCACTCTGTAACATCACTGATACGTAGCTTTGGAGCCAACCCAATTGTTTATGAACTTGATAAAATCACAAATGGGTCACAGATTGAAAGTGAGTTGCTTCAAATGGGGTGTAAACCAAGTGTACCTGCTGTTTTCATAGGACAACAATTCAGAGGTGGTTCCAAAAAAATCATGAGCCTTCATGTGAGGAATCAATTAGTACCTATGTTGAAGGATGCTGGAGCTATATGGATTTGA
Protein sequence	>MS.gene006980.t1 MDTVTSMVGEKPVVIFSKSTCCLSHSVTSLIRSFGANPIVYELDKITNGSQIESELLQMGCKPSVPAVFIGQQFRGGSKKIMSLHVRNQLVPMLKDAGAIWI