Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52509.t1 | XP_013448230.1 | 99.1 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 4.00E-52 | 213.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52509.t1 | P55142 | 77.1 | 105 | 24 | 0 | 1 | 105 | 1 | 105 | 2.7e-41 | 169.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52509.t1 | A0A072TXU3 | 99.1 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.9e-52 | 213.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52509.t1 | MTR_7g035245 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 5.32e-75 | 217 |
| MS.gene52509.t1 | MTR_3g077570 | 65.714 | 105 | 36 | 0 | 2 | 106 | 17 | 121 | 9.17e-47 | 146 |
| MS.gene52509.t1 | MTR_3g077560 | 60.377 | 106 | 42 | 0 | 2 | 107 | 20 | 125 | 2.34e-45 | 143 |
| MS.gene52509.t1 | MTR_1g069255 | 52.083 | 96 | 45 | 1 | 7 | 101 | 87 | 182 | 5.02e-26 | 95.9 |
| MS.gene52509.t1 | MTR_2g038560 | 44.828 | 87 | 48 | 0 | 10 | 96 | 35 | 121 | 7.54e-24 | 88.6 |
| MS.gene52509.t1 | MTR_5g021090 | 43.333 | 90 | 51 | 0 | 10 | 99 | 40 | 129 | 1.88e-23 | 87.8 |
| MS.gene52509.t1 | MTR_2g038560 | 44.828 | 87 | 48 | 0 | 10 | 96 | 79 | 165 | 2.30e-23 | 88.6 |
| MS.gene52509.t1 | MTR_2g038560 | 44.828 | 87 | 48 | 0 | 10 | 96 | 76 | 162 | 2.41e-23 | 88.6 |
| MS.gene52509.t1 | MTR_2g019900 | 40.000 | 100 | 60 | 0 | 3 | 102 | 1 | 100 | 9.33e-21 | 80.1 |
| MS.gene52509.t1 | MTR_4g119050 | 40.594 | 101 | 59 | 1 | 3 | 102 | 1 | 101 | 2.25e-19 | 76.6 |
| MS.gene52509.t1 | MTR_4g119030 | 40.594 | 101 | 59 | 1 | 3 | 102 | 1 | 101 | 2.25e-19 | 76.6 |
| MS.gene52509.t1 | MTR_4g119040 | 40.594 | 101 | 59 | 1 | 3 | 102 | 1 | 101 | 2.25e-19 | 76.6 |
| MS.gene52509.t1 | MTR_7g108260 | 42.553 | 94 | 54 | 0 | 9 | 102 | 7 | 100 | 1.42e-18 | 74.3 |
| MS.gene52509.t1 | MTR_1g088905 | 41.053 | 95 | 56 | 0 | 8 | 102 | 6 | 100 | 4.01e-18 | 73.2 |
| MS.gene52509.t1 | MTR_7g026770 | 41.584 | 101 | 58 | 1 | 3 | 102 | 22 | 122 | 2.47e-17 | 75.1 |
| MS.gene52509.t1 | MTR_7g022690 | 36.634 | 101 | 63 | 1 | 3 | 102 | 30 | 130 | 4.56e-16 | 68.9 |
| MS.gene52509.t1 | MTR_1g088910 | 35.000 | 100 | 65 | 0 | 3 | 102 | 1 | 100 | 6.33e-16 | 67.8 |
| MS.gene52509.t1 | MTR_7g022550 | 36.634 | 101 | 63 | 1 | 3 | 102 | 30 | 130 | 8.08e-16 | 68.2 |
| MS.gene52509.t1 | MTR_7g022710 | 35.644 | 101 | 64 | 1 | 3 | 102 | 30 | 130 | 1.29e-15 | 67.8 |
| MS.gene52509.t1 | MTR_7g108250 | 39.362 | 94 | 57 | 0 | 9 | 102 | 7 | 100 | 3.33e-15 | 65.9 |
| MS.gene52509.t1 | MTR_1g088925 | 36.170 | 94 | 60 | 0 | 3 | 96 | 1 | 94 | 3.80e-15 | 65.5 |
| MS.gene52509.t1 | MTR_2g048970 | 38.384 | 99 | 57 | 1 | 8 | 102 | 33 | 131 | 4.74e-15 | 66.2 |
| MS.gene52509.t1 | MTR_2g019950 | 35.000 | 100 | 65 | 0 | 3 | 102 | 1 | 100 | 4.81e-15 | 65.5 |
| MS.gene52509.t1 | MTR_1g088920 | 35.106 | 94 | 61 | 0 | 3 | 96 | 1 | 94 | 5.86e-15 | 65.1 |
| MS.gene52509.t1 | MTR_1g088895 | 37.234 | 94 | 59 | 0 | 9 | 102 | 7 | 100 | 1.31e-14 | 64.3 |
| MS.gene52509.t1 | MTR_7g108220 | 34.653 | 101 | 65 | 1 | 3 | 102 | 1 | 101 | 2.27e-14 | 63.5 |
| MS.gene52509.t1 | MTR_7g108210 | 33.663 | 101 | 66 | 1 | 3 | 102 | 1 | 101 | 1.15e-13 | 62.0 |
| MS.gene52509.t1 | MTR_7g108200 | 34.043 | 94 | 62 | 0 | 3 | 96 | 1 | 94 | 2.27e-13 | 61.2 |
| MS.gene52509.t1 | MTR_1g015890 | 33.000 | 100 | 65 | 1 | 5 | 102 | 48 | 147 | 4.68e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52509.t1 | AT5G40370 | 73.832 | 107 | 28 | 0 | 1 | 107 | 1 | 107 | 7.03e-58 | 174 |
| MS.gene52509.t1 | AT5G63030 | 67.961 | 103 | 33 | 0 | 5 | 107 | 21 | 123 | 3.44e-48 | 150 |
| MS.gene52509.t1 | AT5G40370 | 72.527 | 91 | 25 | 0 | 17 | 107 | 42 | 132 | 1.45e-47 | 149 |
| MS.gene52509.t1 | AT2G20270 | 51.485 | 101 | 48 | 1 | 7 | 106 | 79 | 179 | 2.36e-27 | 99.0 |
| MS.gene52509.t1 | AT5G20500 | 46.809 | 94 | 50 | 0 | 7 | 100 | 36 | 129 | 6.82e-27 | 96.7 |
| MS.gene52509.t1 | AT1G77370 | 44.444 | 90 | 50 | 0 | 10 | 99 | 41 | 130 | 1.64e-24 | 90.5 |
| MS.gene52509.t1 | AT4G28730 | 43.564 | 101 | 56 | 1 | 7 | 106 | 74 | 174 | 8.91e-24 | 89.7 |
| MS.gene52509.t1 | AT2G20270 | 40.625 | 128 | 48 | 1 | 7 | 106 | 79 | 206 | 7.04e-23 | 88.2 |
| MS.gene52509.t1 | AT4G15700 | 44.792 | 96 | 53 | 0 | 7 | 102 | 5 | 100 | 1.98e-20 | 79.3 |
| MS.gene52509.t1 | AT4G15680 | 41.000 | 100 | 59 | 0 | 3 | 102 | 1 | 100 | 2.38e-19 | 76.6 |
| MS.gene52509.t1 | AT4G15690 | 41.000 | 100 | 59 | 0 | 3 | 102 | 1 | 100 | 5.86e-19 | 75.5 |
| MS.gene52509.t1 | AT4G15670 | 40.000 | 100 | 60 | 0 | 3 | 102 | 1 | 100 | 6.40e-19 | 75.5 |
| MS.gene52509.t1 | AT4G15660 | 40.000 | 100 | 60 | 0 | 3 | 102 | 1 | 100 | 8.67e-19 | 75.1 |
| MS.gene52509.t1 | AT1G77370 | 34.483 | 116 | 50 | 1 | 10 | 99 | 41 | 156 | 1.07e-18 | 76.3 |
| MS.gene52509.t1 | AT5G18600 | 40.000 | 95 | 57 | 0 | 8 | 102 | 6 | 100 | 1.33e-18 | 74.7 |
| MS.gene52509.t1 | AT3G62930 | 38.000 | 100 | 62 | 0 | 3 | 102 | 1 | 100 | 5.28e-18 | 73.2 |
| MS.gene52509.t1 | AT1G03020 | 38.000 | 100 | 62 | 0 | 3 | 102 | 1 | 100 | 4.25e-17 | 70.9 |
| MS.gene52509.t1 | AT3G21460 | 38.947 | 95 | 58 | 0 | 8 | 102 | 6 | 100 | 4.02e-16 | 68.2 |
| MS.gene52509.t1 | AT2G47880 | 36.000 | 100 | 64 | 0 | 3 | 102 | 1 | 100 | 2.60e-15 | 66.2 |
| MS.gene52509.t1 | AT5G14070 | 37.037 | 108 | 60 | 1 | 3 | 102 | 31 | 138 | 2.79e-15 | 67.0 |
| MS.gene52509.t1 | AT4G33040 | 35.294 | 102 | 62 | 1 | 5 | 102 | 41 | 142 | 3.35e-15 | 67.0 |
| MS.gene52509.t1 | AT3G62950 | 33.663 | 101 | 66 | 1 | 3 | 102 | 1 | 101 | 1.23e-14 | 64.3 |
| MS.gene52509.t1 | AT3G62960 | 36.170 | 94 | 60 | 0 | 3 | 96 | 1 | 94 | 1.97e-14 | 63.9 |
| MS.gene52509.t1 | AT4G28730 | 46.269 | 67 | 35 | 1 | 7 | 72 | 74 | 140 | 2.27e-14 | 64.7 |
| MS.gene52509.t1 | AT1G06830 | 36.170 | 94 | 60 | 0 | 3 | 96 | 1 | 94 | 3.55e-14 | 63.2 |
| MS.gene52509.t1 | AT2G30540 | 37.234 | 94 | 59 | 0 | 3 | 96 | 1 | 94 | 7.47e-14 | 62.4 |
| MS.gene52509.t1 | AT2G47870 | 30.693 | 101 | 69 | 1 | 3 | 102 | 1 | 101 | 8.53e-14 | 62.4 |
| MS.gene52509.t1 | AT3G02000 | 37.736 | 106 | 60 | 1 | 3 | 102 | 29 | 134 | 5.61e-13 | 60.8 |
| MS.gene52509.t1 | AT5G11930 | 32.323 | 99 | 57 | 3 | 5 | 102 | 57 | 146 | 6.44e-11 | 55.8 |
Find 32 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAACTCTTCACTGATT+TGG | 0.249041 | 7.2:+62489651 | MS.gene52509:CDS |
| ACATCTGCTGGAGCTATTTC+CGG | 0.264150 | 7.2:+62491848 | MS.gene52509:CDS |
| AAGAAACTCTTCACTGATTT+GGG | 0.299250 | 7.2:+62489652 | MS.gene52509:CDS |
| CAGTCCTCTGACCAGTCCAC+TGG | 0.386968 | 7.2:-62491448 | None:intergenic |
| GTACCCCTGCTGACATCTGC+TGG | 0.393719 | 7.2:+62491836 | MS.gene52509:CDS |
| TTTCTTCACTTGAACGCAAA+AGG | 0.401883 | 7.2:-62489635 | None:intergenic |
| GACACGATCTCCTTTGCCTT+TGG | 0.420598 | 7.2:-62489459 | None:intergenic |
| TCCACTGGGCTAATGCTGCC+TGG | 0.439792 | 7.2:-62491433 | None:intergenic |
| CCTGAAAACAACGACGGGAT+TGG | 0.458655 | 7.2:-62489484 | None:intergenic |
| TAGCTCCAGCAGATGTCAGC+AGG | 0.465614 | 7.2:-62491841 | None:intergenic |
| TCATCTTTATGAGGTTGAAC+CGG | 0.477995 | 7.2:-62491867 | None:intergenic |
| AACAACTAACTTGCAAAACC+AGG | 0.482969 | 7.2:+62491805 | MS.gene52509:CDS |
| AAACCAAGCTCATCTTTATG+AGG | 0.483988 | 7.2:-62491876 | None:intergenic |
| CTTGCAAAACCAGGGTAAGC+TGG | 0.499527 | 7.2:+62491814 | MS.gene52509:CDS |
| TTCTTCACTTGAACGCAAAA+GGG | 0.501319 | 7.2:-62489634 | None:intergenic |
| AGCTGATGGAAGTGAGATCC+AGG | 0.502280 | 7.2:+62491415 | MS.gene52509:intron |
| ATTGGCGGAAACCACATTGG+CGG | 0.544707 | 7.2:+62491485 | MS.gene52509:CDS |
| GCAGCATTAGCCCAGTGGAC+TGG | 0.561864 | 7.2:+62491437 | MS.gene52509:CDS |
| ACATTCAGAATCAAGTTCAA+CGG | 0.570967 | 7.2:-62489689 | None:intergenic |
| TTTATTGGCGGAAACCACAT+TGG | 0.582108 | 7.2:+62491482 | MS.gene52509:CDS |
| GCAGGGGTACCAGCTTACCC+TGG | 0.591610 | 7.2:-62491823 | None:intergenic |
| AGTCCTCTGACCAGTCCACT+GGG | 0.592988 | 7.2:-62491447 | None:intergenic |
| TAGCAAAATGGCACTACCAA+AGG | 0.597425 | 7.2:+62489443 | None:intergenic |
| AGTTACCTGAAAACAACGAC+GGG | 0.599879 | 7.2:-62489489 | None:intergenic |
| AGCTCCAGCAGATGTCAGCA+GGG | 0.606978 | 7.2:-62491840 | None:intergenic |
| TAGCCCAGTGGACTGGTCAG+AGG | 0.614752 | 7.2:+62491444 | MS.gene52509:CDS |
| AATGGCACTACCAAAGGCAA+AGG | 0.621312 | 7.2:+62489449 | None:intergenic |
| TCCAGGCAGCATTAGCCCAG+TGG | 0.640066 | 7.2:+62491432 | MS.gene52509:CDS |
| TACAGTCACAGCCGCCAATG+TGG | 0.654629 | 7.2:-62491496 | None:intergenic |
| ACAACTAACTTGCAAAACCA+GGG | 0.677384 | 7.2:+62491806 | MS.gene52509:CDS |
| GAGTTACCTGAAAACAACGA+CGG | 0.699277 | 7.2:-62489490 | None:intergenic |
| GCTCCAGCAGATGTCAGCAG+GGG | 0.702458 | 7.2:-62491839 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTAAATAAATAAA+AGG | - | chr7.2:62489729-62489748 | None:intergenic | 0.0% |
| !!! | AGAATACTTTATTATATTTT+AGG | + | chr7.2:62489781-62489800 | MS.gene52509:intron | 10.0% |
| !!! | GAATACTTTATTATATTTTA+GGG | + | chr7.2:62489782-62489801 | MS.gene52509:intron | 10.0% |
| !!! | TATTTTTATTTATTTCATTG+AGG | - | chr7.2:62490345-62490364 | None:intergenic | 10.0% |
| !!! | TTTAACTTTAAACTATAATT+TGG | + | chr7.2:62490072-62490091 | MS.gene52509:intron | 10.0% |
| !!! | TATTGTTTAACTCATTTTTA+CGG | + | chr7.2:62490131-62490150 | MS.gene52509:intron | 15.0% |
| !!! | TGATTTCATAAAATTGATTT+TGG | - | chr7.2:62490174-62490193 | None:intergenic | 15.0% |
| !! | AAAACCATAAAATATACACA+AGG | - | chr7.2:62491317-62491336 | None:intergenic | 20.0% |
| !! | AGAACATAAAAAAATGAATC+GGG | - | chr7.2:62490202-62490221 | None:intergenic | 20.0% |
| !! | ATCAACAGAAAAAAAAATGA+AGG | - | chr7.2:62489529-62489548 | None:intergenic | 20.0% |
| !! | CATTAAGTAGTAATTACAAT+AGG | - | chr7.2:62490840-62490859 | None:intergenic | 20.0% |
| !! | GAGAACATAAAAAAATGAAT+CGG | - | chr7.2:62490203-62490222 | None:intergenic | 20.0% |
| !!! | AACATTAATTTTGACATGTT+TGG | - | chr7.2:62490633-62490652 | None:intergenic | 20.0% |
| !!! | AGGGTTAATAAATTGTTTTA+CGG | + | chr7.2:62489801-62489820 | MS.gene52509:intron | 20.0% |
| !!! | ATAATTTTCACTTAGTCATA+TGG | + | chr7.2:62491247-62491266 | MS.gene52509:intron | 20.0% |
| !!! | ATTTCCTTGTGTATATTTTA+TGG | + | chr7.2:62491310-62491329 | MS.gene52509:intron | 20.0% |
| !!! | CAAGTTAGAATCAATTTTAA+AGG | + | chr7.2:62490583-62490602 | MS.gene52509:intron | 20.0% |
| !!! | TTTGAATATTTTGTGAACAT+AGG | + | chr7.2:62490700-62490719 | MS.gene52509:intron | 20.0% |
| ! | ATCATGCAAATAAAGTGATT+AGG | - | chr7.2:62490922-62490941 | None:intergenic | 25.0% |
| ! | TATTCAAAATGAAGTGTGTT+TGG | - | chr7.2:62490688-62490707 | None:intergenic | 25.0% |
| ! | TCAATATTGTTCAAAAGCTA+CGG | - | chr7.2:62489879-62489898 | None:intergenic | 25.0% |
| ! | TTGATTATCTAGAAAACAAC+TGG | - | chr7.2:62491220-62491239 | None:intergenic | 25.0% |
| ! | TTTGATTAGGTCAATGAATT+TGG | + | chr7.2:62490319-62490338 | MS.gene52509:intron | 25.0% |
| !! | AATTCTACAGATTTTATGCA+TGG | - | chr7.2:62491277-62491296 | None:intergenic | 25.0% |
| !! | GTTTTGTATTATTCATGATG+AGG | - | chr7.2:62490390-62490409 | None:intergenic | 25.0% |
| !! | TAAGTGTCATATGTTGTTTA+AGG | + | chr7.2:62490784-62490803 | MS.gene52509:intron | 25.0% |
| !! | TAATAAAGTATTCTCAGAAG+AGG | - | chr7.2:62489775-62489794 | None:intergenic | 25.0% |
| !! | TAGCTTTTGAACAATATTGA+TGG | + | chr7.2:62489879-62489898 | MS.gene52509:intron | 25.0% |
| !! | TTAATGTTATGCATCACTTT+TGG | + | chr7.2:62490645-62490664 | MS.gene52509:intron | 25.0% |
| !!! | TCACTTTATTTGCATGATTT+TGG | + | chr7.2:62490924-62490943 | MS.gene52509:intron | 25.0% |
| !!! | TGCATATTTGGTTTCAATTT+TGG | + | chr7.2:62489962-62489981 | MS.gene52509:intron | 25.0% |
| ACATTCAGAATCAAGTTCAA+CGG | - | chr7.2:62489692-62489711 | None:intergenic | 30.0% | |
| ATGAAATGAAACCAGTGATT+AGG | - | chr7.2:62491745-62491764 | None:intergenic | 30.0% | |
| ATTGAAACCAAATATGCACA+TGG | - | chr7.2:62489960-62489979 | None:intergenic | 30.0% | |
| CTGTAGAATTCACTAGTAAT+TGG | + | chr7.2:62491287-62491306 | MS.gene52509:intron | 30.0% | |
| GACAAAACACATAGAAATCA+TGG | - | chr7.2:62491352-62491371 | None:intergenic | 30.0% | |
| TGATATGTTTGAGTGTTATC+AGG | + | chr7.2:62490023-62490042 | MS.gene52509:intron | 30.0% | |
| TTGAAACCAAATATGCACAT+GGG | - | chr7.2:62489959-62489978 | None:intergenic | 30.0% | |
| TTTCAGTAAAATGTGTACGA+AGG | + | chr7.2:62491077-62491096 | MS.gene52509:intron | 30.0% | |
| TTTCCGCCAATAAAAACATT+TGG | - | chr7.2:62491476-62491495 | None:intergenic | 30.0% | |
| ! | CAAACAACATTTTACATGTG+AGG | + | chr7.2:62490285-62490304 | MS.gene52509:intron | 30.0% |
| ! | CAACATTTTGCACTAAATAG+CGG | + | chr7.2:62491639-62491658 | MS.gene52509:intron | 30.0% |
| ! | TTGGTGTGTATTTTGTTACT+GGG | + | chr7.2:62490943-62490962 | MS.gene52509:intron | 30.0% |
| !! | AAGAAACTCTTCACTGATTT+GGG | + | chr7.2:62489652-62489671 | MS.gene52509:CDS | 30.0% |
| !! | ACTCAATTTTCTAGTCAAAC+TGG | + | chr7.2:62490364-62490383 | MS.gene52509:intron | 30.0% |
| !! | ACTGTGCCAAATGTTTTTAT+TGG | + | chr7.2:62491467-62491486 | MS.gene52509:CDS | 30.0% |
| !! | CAACGCTGATTTGTTTAATT+CGG | + | chr7.2:62489568-62489587 | MS.gene52509:intron | 30.0% |
| !! | TTTGGTGTGTATTTTGTTAC+TGG | + | chr7.2:62490942-62490961 | MS.gene52509:intron | 30.0% |
| !!! | AGTTGTTTTTGGTTAAGTGT+TGG | + | chr7.2:62491016-62491035 | MS.gene52509:intron | 30.0% |
| AATACAAAACAACTCCGTGT+TGG | + | chr7.2:62490400-62490419 | MS.gene52509:intron | 35.0% | |
| AATCACTCTGCTTCATTTAC+TGG | + | chr7.2:62491111-62491130 | MS.gene52509:intron | 35.0% | |
| ACATCACAAACTCATACCAA+AGG | - | chr7.2:62490257-62490276 | None:intergenic | 35.0% | |
| AGATTAATCACACATCACGA+TGG | - | chr7.2:62489926-62489945 | None:intergenic | 35.0% | |
| ATATTGTTCAAAAGCTACGG+TGG | - | chr7.2:62489876-62489895 | None:intergenic | 35.0% | |
| ATCGTGATGTGTGATTAATC+TGG | + | chr7.2:62489925-62489944 | MS.gene52509:intron | 35.0% | |
| CGAACATTAGTAACCTATGT+TGG | + | chr7.2:62491161-62491180 | MS.gene52509:intron | 35.0% | |
| GTCGTAAAATCAAACCAACA+CGG | - | chr7.2:62490417-62490436 | None:intergenic | 35.0% | |
| TAGTAACCTATGTTGGATCA+GGG | + | chr7.2:62491168-62491187 | MS.gene52509:intron | 35.0% | |
| TATGCAAGTTTCCTAATCAC+TGG | + | chr7.2:62491731-62491750 | MS.gene52509:intron | 35.0% | |
| TATGTTTGAGTGTTATCAGG+TGG | + | chr7.2:62490026-62490045 | MS.gene52509:intron | 35.0% | |
| TCGTGATGTGTGATTAATCT+GGG | + | chr7.2:62489926-62489945 | MS.gene52509:intron | 35.0% | |
| TGCATAATGTCAAACCACTT+CGG | - | chr7.2:62491396-62491415 | None:intergenic | 35.0% | |
| TTAGTAACCTATGTTGGATC+AGG | + | chr7.2:62491167-62491186 | MS.gene52509:intron | 35.0% | |
| TTCTTCACTTGAACGCAAAA+GGG | - | chr7.2:62489637-62489656 | None:intergenic | 35.0% | |
| TTTCTTCACTTGAACGCAAA+AGG | - | chr7.2:62489638-62489657 | None:intergenic | 35.0% | |
| TTTGTGAACATAGGTTTCAC+TGG | + | chr7.2:62490709-62490728 | MS.gene52509:intron | 35.0% | |
| ! | AACAACTAACTTGCAAAACC+AGG | + | chr7.2:62491805-62491824 | MS.gene52509:CDS | 35.0% |
| ! | ACAACTAACTTGCAAAACCA+GGG | + | chr7.2:62491806-62491825 | MS.gene52509:CDS | 35.0% |
| ! | ATGAAGTGTGTTTGGTTTCA+TGG | - | chr7.2:62490680-62490699 | None:intergenic | 35.0% |
| ! | GAAGAAACTCTTCACTGATT+TGG | + | chr7.2:62489651-62489670 | MS.gene52509:CDS | 35.0% |
| ! | TCTTTTCTACGATTCACGAA+TGG | - | chr7.2:62491559-62491578 | None:intergenic | 35.0% |
| !! | GTGCCAAATGTTTTTATTGG+CGG | + | chr7.2:62491470-62491489 | MS.gene52509:CDS | 35.0% |
| !! | TTATCAGGTGGAATTGGTTT+TGG | + | chr7.2:62490038-62490057 | MS.gene52509:intron | 35.0% |
| !! | TTTACATGTGAGGTTTTAGC+TGG | + | chr7.2:62490295-62490314 | MS.gene52509:intron | 35.0% |
| AACAATCCCTGATCCAACAT+AGG | - | chr7.2:62491177-62491196 | None:intergenic | 40.0% | |
| ACAAACTCATACCAAAGGTG+GGG | - | chr7.2:62490252-62490271 | None:intergenic | 40.0% | |
| ACCAAGTGAATTAACCGAAG+TGG | + | chr7.2:62491379-62491398 | MS.gene52509:intron | 40.0% | |
| ACCACTTCGGTTAATTCACT+TGG | - | chr7.2:62491383-62491402 | None:intergenic | 40.0% | |
| AGTTACCTGAAAACAACGAC+GGG | - | chr7.2:62489492-62489511 | None:intergenic | 40.0% | |
| CACAAACTCATACCAAAGGT+GGG | - | chr7.2:62490253-62490272 | None:intergenic | 40.0% | |
| CATGTTTGGATGATGTCGAT+TGG | - | chr7.2:62490619-62490638 | None:intergenic | 40.0% | |
| GAAGCAGAGTGATTAACTGA+AGG | - | chr7.2:62491105-62491124 | None:intergenic | 40.0% | |
| GACAAACCCATGTGCATATT+TGG | + | chr7.2:62489950-62489969 | MS.gene52509:intron | 40.0% | |
| GAGTTACCTGAAAACAACGA+CGG | - | chr7.2:62489493-62489512 | None:intergenic | 40.0% | |
| GTTTGACATTATGCAGCTGA+TGG | + | chr7.2:62491401-62491420 | MS.gene52509:intron | 40.0% | |
| TAGTCCTTCCACTCATTACA+GGG | + | chr7.2:62490988-62491007 | MS.gene52509:intron | 40.0% | |
| TCACAAACTCATACCAAAGG+TGG | - | chr7.2:62490254-62490273 | None:intergenic | 40.0% | |
| TCGTGAATCGTAGAAAAGAG+CGG | + | chr7.2:62491560-62491579 | MS.gene52509:intron | 40.0% | |
| TGAGTGTTATCAGGTGGAAT+TGG | + | chr7.2:62490032-62490051 | MS.gene52509:intron | 40.0% | |
| TGTTGCTGCATACAATCACA+TGG | - | chr7.2:62491789-62491808 | None:intergenic | 40.0% | |
| TTAAAGCAGAACAAATGCCC+TGG | - | chr7.2:62490767-62490786 | None:intergenic | 40.0% | |
| TTTATTGGCGGAAACCACAT+TGG | + | chr7.2:62491482-62491501 | MS.gene52509:CDS | 40.0% | |
| ! | AGTGTGTTTGGTTTCATGGT+AGG | - | chr7.2:62490676-62490695 | None:intergenic | 40.0% |
| ! | GTGTGTTTGGTTTCATGGTA+GGG | - | chr7.2:62490675-62490694 | None:intergenic | 40.0% |
| !! | ACAGGGTTCAGAGTTGTTTT+TGG | + | chr7.2:62491005-62491024 | MS.gene52509:intron | 40.0% |
| !!! | GGTTTTAGCTGGCTTTGATT+AGG | + | chr7.2:62490306-62490325 | MS.gene52509:intron | 40.0% |
| ACTCTGAACCCTGTAATGAG+TGG | - | chr7.2:62490999-62491018 | None:intergenic | 45.0% | |
| CAAACATTTGTCCCCACCTT+TGG | + | chr7.2:62490238-62490257 | MS.gene52509:intron | 45.0% | |
| CTAGTCCTTCCACTCATTAC+AGG | + | chr7.2:62490987-62491006 | MS.gene52509:intron | 45.0% | |
| CTGCTTCATTTACTGGCAGA+AGG | + | chr7.2:62491118-62491137 | MS.gene52509:intron | 45.0% | |
| TGAACCCTGTAATGAGTGGA+AGG | - | chr7.2:62490995-62491014 | None:intergenic | 45.0% | |
| TGCAAGATGACTGCAAACCA+GGG | + | chr7.2:62490747-62490766 | MS.gene52509:intron | 45.0% | |
| ! | ACATCTGCTGGAGCTATTTC+CGG | + | chr7.2:62491848-62491867 | MS.gene52509:CDS | 45.0% |
| ! | TGGTTTGCAGTCATCTTGCA+GGG | - | chr7.2:62490747-62490766 | None:intergenic | 45.0% |
| AGCTGATGGAAGTGAGATCC+AGG | + | chr7.2:62491415-62491434 | MS.gene52509:intron | 50.0% | |
| ATTGGCGGAAACCACATTGG+CGG | + | chr7.2:62491485-62491504 | MS.gene52509:CDS | 50.0% | |
| CCTGAAAACAACGACGGGAT+TGG | - | chr7.2:62489487-62489506 | None:intergenic | 50.0% | |
| CTGCAAGATGACTGCAAACC+AGG | + | chr7.2:62490746-62490765 | MS.gene52509:intron | 50.0% | |
| CTTGCAAAACCAGGGTAAGC+TGG | + | chr7.2:62491814-62491833 | MS.gene52509:CDS | 50.0% | |
| GACACGATCTCCTTTGCCTT+TGG | - | chr7.2:62489462-62489481 | None:intergenic | 50.0% | |
| ! | CTGGTTTGCAGTCATCTTGC+AGG | - | chr7.2:62490748-62490767 | None:intergenic | 50.0% |
| !! | CCAATCCCGTCGTTGTTTTC+AGG | + | chr7.2:62489484-62489503 | MS.gene52509:CDS | 50.0% |
| AGCTCCAGCAGATGTCAGCA+GGG | - | chr7.2:62491843-62491862 | None:intergenic | 55.0% | |
| AGTCCTCTGACCAGTCCACT+GGG | - | chr7.2:62491450-62491469 | None:intergenic | 55.0% | |
| TACAGTCACAGCCGCCAATG+TGG | - | chr7.2:62491499-62491518 | None:intergenic | 55.0% | |
| TAGCTCCAGCAGATGTCAGC+AGG | - | chr7.2:62491844-62491863 | None:intergenic | 55.0% | |
| CAGTCCTCTGACCAGTCCAC+TGG | - | chr7.2:62491451-62491470 | None:intergenic | 60.0% | |
| GCAGCATTAGCCCAGTGGAC+TGG | + | chr7.2:62491437-62491456 | MS.gene52509:CDS | 60.0% | |
| GCTCCAGCAGATGTCAGCAG+GGG | - | chr7.2:62491842-62491861 | None:intergenic | 60.0% | |
| GTACCCCTGCTGACATCTGC+TGG | + | chr7.2:62491836-62491855 | MS.gene52509:CDS | 60.0% | |
| TCCACTGGGCTAATGCTGCC+TGG | - | chr7.2:62491436-62491455 | None:intergenic | 60.0% | |
| TCCAGGCAGCATTAGCCCAG+TGG | + | chr7.2:62491432-62491451 | MS.gene52509:CDS | 60.0% | |
| !! | TAGCCCAGTGGACTGGTCAG+AGG | + | chr7.2:62491444-62491463 | MS.gene52509:CDS | 60.0% |
| !! | GCAGGGGTACCAGCTTACCC+TGG | - | chr7.2:62491826-62491845 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 62489450 | 62491883 | 62489450 | ID=MS.gene52509 |
| chr7.2 | mRNA | 62489450 | 62491883 | 62489450 | ID=MS.gene52509.t1;Parent=MS.gene52509 |
| chr7.2 | exon | 62489450 | 62489505 | 62489450 | ID=MS.gene52509.t1.exon1;Parent=MS.gene52509.t1 |
| chr7.2 | CDS | 62489450 | 62489505 | 62489450 | ID=cds.MS.gene52509.t1;Parent=MS.gene52509.t1 |
| chr7.2 | exon | 62489621 | 62489709 | 62489621 | ID=MS.gene52509.t1.exon2;Parent=MS.gene52509.t1 |
| chr7.2 | CDS | 62489621 | 62489709 | 62489621 | ID=cds.MS.gene52509.t1;Parent=MS.gene52509.t1 |
| chr7.2 | exon | 62491417 | 62491515 | 62491417 | ID=MS.gene52509.t1.exon3;Parent=MS.gene52509.t1 |
| chr7.2 | CDS | 62491417 | 62491515 | 62491417 | ID=cds.MS.gene52509.t1;Parent=MS.gene52509.t1 |
| chr7.2 | exon | 62491804 | 62491883 | 62491804 | ID=MS.gene52509.t1.exon4;Parent=MS.gene52509.t1 |
| chr7.2 | CDS | 62491804 | 62491883 | 62491804 | ID=cds.MS.gene52509.t1;Parent=MS.gene52509.t1 |
| Gene Sequence |
| Protein sequence |
