Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23009.t1 | XP_003625870.1 | 99 | 102 | 1 | 0 | 1 | 102 | 1 | 102 | 6.10E-50 | 206.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23009.t1 | O82255 | 75.8 | 99 | 24 | 0 | 1 | 99 | 1 | 99 | 1.1e-39 | 163.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23009.t1 | G7KQZ6 | 99.0 | 102 | 1 | 0 | 1 | 102 | 1 | 102 | 4.4e-50 | 206.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049134 | MS.gene23009 | -0.819351 | 1.22E-52 | -1.69E-46 |
MS.gene049150 | MS.gene23009 | 0.838825 | 2.28E-57 | -1.69E-46 |
MS.gene049151 | MS.gene23009 | 0.805751 | 1.15E-49 | -1.69E-46 |
MS.gene049153 | MS.gene23009 | 0.836183 | 1.09E-56 | -1.69E-46 |
MS.gene049195 | MS.gene23009 | 0.800738 | 1.25E-48 | -1.69E-46 |
MS.gene049233 | MS.gene23009 | 0.819849 | 9.36E-53 | -1.69E-46 |
MS.gene049260 | MS.gene23009 | 0.837919 | 3.91E-57 | -1.69E-46 |
MS.gene049346 | MS.gene23009 | 0.809183 | 2.15E-50 | -1.69E-46 |
MS.gene049758 | MS.gene23009 | 0.84002 | 1.12E-57 | -1.69E-46 |
MS.gene049910 | MS.gene23009 | 0.832802 | 7.68E-56 | -1.69E-46 |
MS.gene049993 | MS.gene23009 | 0.803076 | 4.14E-49 | -1.69E-46 |
MS.gene050128 | MS.gene23009 | 0.817244 | 3.65E-52 | -1.69E-46 |
MS.gene050168 | MS.gene23009 | 0.837414 | 5.27E-57 | -1.69E-46 |
MS.gene050226 | MS.gene23009 | 0.807864 | 4.10E-50 | -1.69E-46 |
MS.gene050227 | MS.gene23009 | 0.806463 | 8.13E-50 | -1.69E-46 |
MS.gene050301 | MS.gene23009 | 0.829136 | 6.10E-55 | -1.69E-46 |
MS.gene050442 | MS.gene23009 | 0.802728 | 4.89E-49 | -1.69E-46 |
MS.gene050464 | MS.gene23009 | 0.802143 | 6.45E-49 | -1.69E-46 |
MS.gene050558 | MS.gene23009 | 0.816968 | 4.21E-52 | -1.69E-46 |
MS.gene050680 | MS.gene23009 | 0.814438 | 1.54E-51 | -1.69E-46 |
MS.gene050787 | MS.gene23009 | 0.843542 | 1.31E-58 | -1.69E-46 |
MS.gene050820 | MS.gene23009 | 0.805893 | 1.07E-49 | -1.69E-46 |
MS.gene050900 | MS.gene23009 | 0.812984 | 3.22E-51 | -1.69E-46 |
MS.gene05119 | MS.gene23009 | -0.820349 | 7.19E-53 | -1.69E-46 |
MS.gene051265 | MS.gene23009 | 0.810263 | 1.26E-50 | -1.69E-46 |
MS.gene051860 | MS.gene23009 | 0.870425 | 1.47E-66 | -1.69E-46 |
MS.gene052011 | MS.gene23009 | -0.822077 | 2.87E-53 | -1.69E-46 |
MS.gene052077 | MS.gene23009 | 0.813462 | 2.53E-51 | -1.69E-46 |
MS.gene052207 | MS.gene23009 | 0.812582 | 3.94E-51 | -1.69E-46 |
MS.gene052253 | MS.gene23009 | 0.829445 | 5.13E-55 | -1.69E-46 |
MS.gene052255 | MS.gene23009 | 0.823996 | 1.03E-53 | -1.69E-46 |
MS.gene052340 | MS.gene23009 | 0.800652 | 1.30E-48 | -1.69E-46 |
MS.gene053074 | MS.gene23009 | 0.811131 | 8.16E-51 | -1.69E-46 |
MS.gene053184 | MS.gene23009 | 0.857631 | 1.43E-62 | -1.69E-46 |
MS.gene053494 | MS.gene23009 | 0.820579 | 6.37E-53 | -1.69E-46 |
MS.gene053836 | MS.gene23009 | 0.870499 | 1.39E-66 | -1.69E-46 |
MS.gene054010 | MS.gene23009 | 0.812621 | 3.87E-51 | -1.69E-46 |
MS.gene054011 | MS.gene23009 | 0.825851 | 3.74E-54 | -1.69E-46 |
MS.gene054012 | MS.gene23009 | 0.810201 | 1.30E-50 | -1.69E-46 |
MS.gene054013 | MS.gene23009 | 0.808457 | 3.07E-50 | -1.69E-46 |
MS.gene054183 | MS.gene23009 | 0.863549 | 2.30E-64 | -1.69E-46 |
MS.gene054184 | MS.gene23009 | 0.80227 | 6.08E-49 | -1.69E-46 |
MS.gene054185 | MS.gene23009 | 0.807042 | 6.13E-50 | -1.69E-46 |
MS.gene054473 | MS.gene23009 | 0.861539 | 9.56E-64 | -1.69E-46 |
MS.gene054542 | MS.gene23009 | 0.850379 | 1.76E-60 | -1.69E-46 |
MS.gene054618 | MS.gene23009 | 0.827688 | 1.36E-54 | -1.69E-46 |
MS.gene054713 | MS.gene23009 | 0.836775 | 7.68E-57 | -1.69E-46 |
MS.gene054918 | MS.gene23009 | 0.830079 | 3.59E-55 | -1.69E-46 |
MS.gene054930 | MS.gene23009 | 0.833104 | 6.46E-56 | -1.69E-46 |
MS.gene054983 | MS.gene23009 | 0.813792 | 2.14E-51 | -1.69E-46 |
MS.gene055356 | MS.gene23009 | 0.863571 | 2.26E-64 | -1.69E-46 |
MS.gene055357 | MS.gene23009 | 0.800514 | 1.39E-48 | -1.69E-46 |
MS.gene055358 | MS.gene23009 | 0.877434 | 6.30E-69 | -1.69E-46 |
MS.gene055422 | MS.gene23009 | 0.817675 | 2.92E-52 | -1.69E-46 |
MS.gene055428 | MS.gene23009 | 0.812697 | 3.72E-51 | -1.69E-46 |
MS.gene055604 | MS.gene23009 | 0.829431 | 5.17E-55 | -1.69E-46 |
MS.gene055701 | MS.gene23009 | 0.838442 | 2.87E-57 | -1.69E-46 |
MS.gene056191 | MS.gene23009 | 0.804564 | 2.03E-49 | -1.69E-46 |
MS.gene056723 | MS.gene23009 | 0.810393 | 1.18E-50 | -1.69E-46 |
MS.gene056875 | MS.gene23009 | 0.808972 | 2.38E-50 | -1.69E-46 |
MS.gene056902 | MS.gene23009 | 0.802912 | 4.48E-49 | -1.69E-46 |
MS.gene057121 | MS.gene23009 | 0.800546 | 1.37E-48 | -1.69E-46 |
MS.gene057245 | MS.gene23009 | 0.80698 | 6.32E-50 | -1.69E-46 |
MS.gene057448 | MS.gene23009 | 0.811298 | 7.51E-51 | -1.69E-46 |
MS.gene057450 | MS.gene23009 | 0.811583 | 6.51E-51 | -1.69E-46 |
MS.gene057469 | MS.gene23009 | 0.871237 | 7.96E-67 | -1.69E-46 |
MS.gene057639 | MS.gene23009 | 0.826266 | 2.98E-54 | -1.69E-46 |
MS.gene057750 | MS.gene23009 | 0.812963 | 3.25E-51 | -1.69E-46 |
MS.gene058002 | MS.gene23009 | 0.823332 | 1.47E-53 | -1.69E-46 |
MS.gene05811 | MS.gene23009 | 0.82632 | 2.89E-54 | -1.69E-46 |
MS.gene058164 | MS.gene23009 | 0.823709 | 1.20E-53 | -1.69E-46 |
MS.gene058168 | MS.gene23009 | 0.803444 | 3.48E-49 | -1.69E-46 |
MS.gene058236 | MS.gene23009 | 0.805437 | 1.34E-49 | -1.69E-46 |
MS.gene058484 | MS.gene23009 | 0.805923 | 1.06E-49 | -1.69E-46 |
MS.gene05856 | MS.gene23009 | 0.812055 | 5.14E-51 | -1.69E-46 |
MS.gene05886 | MS.gene23009 | 0.81431 | 1.64E-51 | -1.69E-46 |
MS.gene05907 | MS.gene23009 | 0.824099 | 9.70E-54 | -1.69E-46 |
MS.gene059124 | MS.gene23009 | 0.806821 | 6.83E-50 | -1.69E-46 |
MS.gene059128 | MS.gene23009 | 0.822782 | 1.97E-53 | -1.69E-46 |
MS.gene059285 | MS.gene23009 | 0.808038 | 3.77E-50 | -1.69E-46 |
MS.gene059420 | MS.gene23009 | 0.841609 | 4.28E-58 | -1.69E-46 |
MS.gene059462 | MS.gene23009 | 0.811255 | 7.67E-51 | -1.69E-46 |
MS.gene059518 | MS.gene23009 | 0.801193 | 1.01E-48 | -1.69E-46 |
MS.gene059597 | MS.gene23009 | 0.808327 | 3.27E-50 | -1.69E-46 |
MS.gene059609 | MS.gene23009 | 0.857398 | 1.68E-62 | -1.69E-46 |
MS.gene05984 | MS.gene23009 | 0.827501 | 1.51E-54 | -1.69E-46 |
MS.gene059876 | MS.gene23009 | 0.810916 | 9.08E-51 | -1.69E-46 |
MS.gene059958 | MS.gene23009 | 0.80523 | 1.48E-49 | -1.69E-46 |
MS.gene060137 | MS.gene23009 | -0.811442 | 6.99E-51 | -1.69E-46 |
MS.gene060247 | MS.gene23009 | 0.807527 | 4.84E-50 | -1.69E-46 |
MS.gene060322 | MS.gene23009 | 0.80664 | 7.46E-50 | -1.69E-46 |
MS.gene06037 | MS.gene23009 | 0.82003 | 8.51E-53 | -1.69E-46 |
MS.gene060495 | MS.gene23009 | 0.827339 | 1.65E-54 | -1.69E-46 |
MS.gene060683 | MS.gene23009 | 0.811293 | 7.53E-51 | -1.69E-46 |
MS.gene060685 | MS.gene23009 | 0.806349 | 8.59E-50 | -1.69E-46 |
MS.gene060802 | MS.gene23009 | 0.810057 | 1.39E-50 | -1.69E-46 |
MS.gene060998 | MS.gene23009 | 0.803106 | 4.08E-49 | -1.69E-46 |
MS.gene061049 | MS.gene23009 | 0.857473 | 1.59E-62 | -1.69E-46 |
MS.gene061114 | MS.gene23009 | -0.829953 | 3.86E-55 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23009.t1 | MTR_7g108200 | 99.020 | 102 | 1 | 0 | 1 | 102 | 1 | 102 | 1.51e-72 | 210 |
MS.gene23009.t1 | MTR_1g088920 | 78.571 | 98 | 21 | 0 | 1 | 98 | 1 | 98 | 2.48e-57 | 172 |
MS.gene23009.t1 | MTR_1g088925 | 76.531 | 98 | 23 | 0 | 1 | 98 | 1 | 98 | 3.56e-57 | 171 |
MS.gene23009.t1 | MTR_1g088910 | 57.447 | 94 | 40 | 0 | 1 | 94 | 1 | 94 | 2.57e-37 | 121 |
MS.gene23009.t1 | MTR_2g019900 | 55.789 | 95 | 42 | 0 | 1 | 95 | 1 | 95 | 3.13e-37 | 121 |
MS.gene23009.t1 | MTR_2g019950 | 55.789 | 95 | 42 | 0 | 1 | 95 | 1 | 95 | 5.90e-37 | 120 |
MS.gene23009.t1 | MTR_7g108220 | 53.684 | 95 | 43 | 1 | 1 | 94 | 1 | 95 | 1.54e-32 | 109 |
MS.gene23009.t1 | MTR_7g022690 | 46.875 | 96 | 50 | 1 | 1 | 95 | 30 | 125 | 3.84e-32 | 109 |
MS.gene23009.t1 | MTR_7g108210 | 52.632 | 95 | 44 | 1 | 1 | 94 | 1 | 95 | 1.05e-31 | 107 |
MS.gene23009.t1 | MTR_7g022710 | 46.875 | 96 | 50 | 1 | 1 | 95 | 30 | 125 | 1.05e-31 | 108 |
MS.gene23009.t1 | MTR_4g119050 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 1.75e-31 | 107 |
MS.gene23009.t1 | MTR_4g119030 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 1.75e-31 | 107 |
MS.gene23009.t1 | MTR_4g119040 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 1.75e-31 | 107 |
MS.gene23009.t1 | MTR_7g022550 | 45.833 | 96 | 51 | 1 | 1 | 95 | 30 | 125 | 6.78e-31 | 106 |
MS.gene23009.t1 | MTR_7g026770 | 50.000 | 96 | 47 | 1 | 1 | 95 | 22 | 117 | 1.34e-30 | 110 |
MS.gene23009.t1 | MTR_7g108250 | 45.263 | 95 | 52 | 0 | 1 | 95 | 1 | 95 | 3.91e-26 | 93.6 |
MS.gene23009.t1 | MTR_1g088905 | 42.553 | 94 | 54 | 0 | 1 | 94 | 1 | 94 | 1.02e-24 | 89.7 |
MS.gene23009.t1 | MTR_1g088895 | 44.681 | 94 | 52 | 0 | 1 | 94 | 1 | 94 | 6.68e-22 | 82.8 |
MS.gene23009.t1 | MTR_7g108260 | 42.553 | 94 | 54 | 0 | 1 | 94 | 1 | 94 | 1.67e-21 | 81.6 |
MS.gene23009.t1 | MTR_2g014760 | 38.298 | 94 | 58 | 0 | 2 | 95 | 27 | 120 | 8.30e-19 | 75.5 |
MS.gene23009.t1 | MTR_2g048970 | 38.776 | 98 | 56 | 1 | 2 | 95 | 29 | 126 | 1.21e-17 | 72.8 |
MS.gene23009.t1 | MTR_2g090755 | 34.375 | 96 | 56 | 2 | 4 | 95 | 41 | 133 | 1.75e-16 | 70.1 |
MS.gene23009.t1 | MTR_1g069255 | 36.170 | 94 | 59 | 1 | 2 | 94 | 84 | 177 | 1.58e-15 | 68.6 |
MS.gene23009.t1 | MTR_4g079110 | 36.082 | 97 | 59 | 2 | 2 | 95 | 52 | 148 | 9.10e-15 | 65.9 |
MS.gene23009.t1 | MTR_3g077570 | 32.979 | 94 | 63 | 0 | 1 | 94 | 18 | 111 | 1.80e-13 | 61.6 |
MS.gene23009.t1 | MTR_7g035245 | 34.043 | 94 | 62 | 0 | 1 | 94 | 3 | 96 | 4.42e-13 | 60.5 |
MS.gene23009.t1 | MTR_3g077560 | 32.979 | 94 | 63 | 0 | 1 | 94 | 21 | 114 | 1.74e-12 | 59.3 |
MS.gene23009.t1 | MTR_1g015890 | 34.737 | 95 | 52 | 2 | 3 | 91 | 48 | 138 | 2.95e-12 | 59.3 |
MS.gene23009.t1 | MTR_2g038560 | 31.707 | 82 | 56 | 0 | 13 | 94 | 40 | 121 | 3.97e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23009.t1 | AT2G47880 | 75.758 | 99 | 24 | 0 | 1 | 99 | 1 | 99 | 1.14e-54 | 165 |
MS.gene23009.t1 | AT2G30540 | 71.000 | 100 | 29 | 0 | 1 | 100 | 1 | 100 | 4.86e-54 | 164 |
MS.gene23009.t1 | AT1G06830 | 74.227 | 97 | 25 | 0 | 1 | 97 | 1 | 97 | 2.59e-53 | 162 |
MS.gene23009.t1 | AT3G62960 | 71.569 | 102 | 29 | 0 | 1 | 102 | 1 | 102 | 4.92e-53 | 161 |
MS.gene23009.t1 | AT3G62950 | 53.000 | 100 | 46 | 1 | 1 | 99 | 1 | 100 | 1.01e-37 | 122 |
MS.gene23009.t1 | AT2G47870 | 53.125 | 96 | 44 | 1 | 1 | 95 | 1 | 96 | 4.10e-36 | 118 |
MS.gene23009.t1 | AT3G21460 | 54.737 | 95 | 43 | 0 | 1 | 95 | 1 | 95 | 1.93e-35 | 117 |
MS.gene23009.t1 | AT4G15680 | 49.474 | 95 | 48 | 0 | 1 | 95 | 1 | 95 | 1.27e-32 | 109 |
MS.gene23009.t1 | AT5G18600 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 2.30e-32 | 109 |
MS.gene23009.t1 | AT4G15670 | 48.421 | 95 | 49 | 0 | 1 | 95 | 1 | 95 | 5.52e-32 | 108 |
MS.gene23009.t1 | AT4G15660 | 47.423 | 97 | 51 | 0 | 1 | 97 | 1 | 97 | 9.85e-32 | 107 |
MS.gene23009.t1 | AT4G15700 | 48.421 | 95 | 49 | 0 | 1 | 95 | 1 | 95 | 1.43e-31 | 107 |
MS.gene23009.t1 | AT4G15690 | 48.421 | 95 | 49 | 0 | 1 | 95 | 1 | 95 | 2.67e-31 | 106 |
MS.gene23009.t1 | AT5G14070 | 43.689 | 103 | 50 | 2 | 1 | 95 | 31 | 133 | 3.50e-26 | 94.7 |
MS.gene23009.t1 | AT3G62930 | 42.105 | 95 | 55 | 0 | 1 | 95 | 1 | 95 | 2.48e-25 | 91.3 |
MS.gene23009.t1 | AT3G02000 | 43.434 | 99 | 50 | 1 | 3 | 95 | 31 | 129 | 1.23e-23 | 88.2 |
MS.gene23009.t1 | AT1G03020 | 42.105 | 95 | 55 | 0 | 1 | 95 | 1 | 95 | 1.83e-23 | 86.7 |
MS.gene23009.t1 | AT1G28480 | 33.673 | 98 | 61 | 2 | 2 | 95 | 33 | 130 | 3.93e-15 | 66.2 |
MS.gene23009.t1 | AT4G33040 | 39.785 | 93 | 50 | 2 | 3 | 90 | 41 | 132 | 5.21e-15 | 66.2 |
MS.gene23009.t1 | AT4G28730 | 35.556 | 90 | 57 | 1 | 2 | 90 | 71 | 160 | 1.08e-14 | 66.2 |
MS.gene23009.t1 | AT5G40370 | 31.915 | 94 | 64 | 0 | 1 | 94 | 3 | 96 | 1.28e-12 | 59.3 |
MS.gene23009.t1 | AT5G20500 | 33.333 | 93 | 62 | 0 | 2 | 94 | 33 | 125 | 4.71e-12 | 58.5 |
MS.gene23009.t1 | AT4G28730 | 38.571 | 70 | 42 | 1 | 2 | 70 | 71 | 140 | 1.12e-11 | 57.8 |
MS.gene23009.t1 | AT2G20270 | 31.915 | 94 | 63 | 1 | 2 | 94 | 76 | 169 | 1.62e-11 | 57.8 |
Find 34 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCCATTTCCCTTCCTTC+AGG | 0.237314 | 7.2:-6758220 | None:intergenic |
CCTGTTCCTGCTGTGTTCAT+TGG | 0.272350 | 7.2:+6758271 | MS.gene23009:CDS |
TGTTTCAAGAACTTGGGATT+AGG | 0.357723 | 7.2:+6758170 | MS.gene23009:CDS |
TCTCCATTTCCCTTCCTTCA+GGG | 0.366539 | 7.2:-6758219 | None:intergenic |
AACATTCTGTTTCAAGAACT+TGG | 0.368312 | 7.2:+6758163 | MS.gene23009:CDS |
GTGAAGGGACATAATTTCAT+TGG | 0.393227 | 7.2:-6758314 | None:intergenic |
AGACCCTGAAGGAAGGGAAA+TGG | 0.401791 | 7.2:+6758216 | MS.gene23009:CDS |
TTGAGGTTGGCATCTGAAAA+AGG | 0.425553 | 7.2:+6758094 | MS.gene23009:CDS |
TGATTCAATTAGAACGAGAT+TGG | 0.435807 | 7.2:-6758372 | None:intergenic |
AGAACTTGGGATTAGGCCTA+TGG | 0.436071 | 7.2:+6758177 | MS.gene23009:CDS |
GTTCCTGCTGTGTTCATTGG+AGG | 0.437740 | 7.2:+6758274 | MS.gene23009:CDS |
GAGAAAGCTTTGTTGAGGTT+AGG | 0.441107 | 7.2:+6758238 | MS.gene23009:CDS |
TTCATTGGAGGGCAACTGAT+GGG | 0.446550 | 7.2:+6758286 | MS.gene23009:CDS |
CCAATGAACACAGCAGGAAC+AGG | 0.496655 | 7.2:-6758271 | None:intergenic |
GTTCATTGGAGGGCAACTGA+TGG | 0.499451 | 7.2:+6758285 | MS.gene23009:CDS |
ATTGAGTGAGGGAGCCACTT+AGG | 0.507881 | 7.2:-6758336 | None:intergenic |
CAATTAGAACGAGATTGGTA+TGG | 0.511391 | 7.2:-6758367 | None:intergenic |
TGATCAATTTCATGAACCAT+AGG | 0.516130 | 7.2:-6758193 | None:intergenic |
TTCCTGCTGTGTTCATTGGA+GGG | 0.520038 | 7.2:+6758275 | MS.gene23009:CDS |
ACATTCTGTTTCAAGAACTT+GGG | 0.523434 | 7.2:+6758164 | MS.gene23009:CDS |
TGCCCTCCAATGAACACAGC+AGG | 0.533916 | 7.2:-6758277 | None:intergenic |
TTGATCAAGACCCTGAAGGA+AGG | 0.541164 | 7.2:+6758209 | MS.gene23009:CDS |
AAGGGACATAATTTCATTGG+TGG | 0.541849 | 7.2:-6758311 | None:intergenic |
ATTATGTCCCTTCACCTAAG+TGG | 0.557113 | 7.2:+6758322 | MS.gene23009:CDS |
TGATCAAGACCCTGAAGGAA+GGG | 0.574619 | 7.2:+6758210 | MS.gene23009:CDS |
TCATTGGAGGGCAACTGATG+GGG | 0.576911 | 7.2:+6758287 | MS.gene23009:CDS |
TGAGGGAGCCACTTAGGTGA+AGG | 0.580811 | 7.2:-6758330 | None:intergenic |
AAATGGAGAAAGCTTTGTTG+AGG | 0.591044 | 7.2:+6758233 | MS.gene23009:CDS |
GATGGACAAAGTGTTGAGGT+TGG | 0.596621 | 7.2:+6758081 | None:intergenic |
GAGGGAGCCACTTAGGTGAA+GGG | 0.625802 | 7.2:-6758329 | None:intergenic |
TCAAGATGGACAAAGTGTTG+AGG | 0.649690 | 7.2:+6758077 | None:intergenic |
TGGCTTGATCAATTGAGTGA+GGG | 0.652206 | 7.2:-6758347 | None:intergenic |
GAAATTGATCAAGACCCTGA+AGG | 0.656540 | 7.2:+6758205 | MS.gene23009:CDS |
ATGGCTTGATCAATTGAGTG+AGG | 0.695900 | 7.2:-6758348 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AACATTCTGTTTCAAGAACT+TGG | + | chr7.2:6758163-6758182 | MS.gene23009:CDS | 30.0% | |
ACATTCTGTTTCAAGAACTT+GGG | + | chr7.2:6758164-6758183 | MS.gene23009:CDS | 30.0% | |
TGATCAATTTCATGAACCAT+AGG | - | chr7.2:6758196-6758215 | None:intergenic | 30.0% | |
AAGGGACATAATTTCATTGG+TGG | - | chr7.2:6758314-6758333 | None:intergenic | 35.0% | |
CAATTAGAACGAGATTGGTA+TGG | - | chr7.2:6758370-6758389 | None:intergenic | 35.0% | |
GTGAAGGGACATAATTTCAT+TGG | - | chr7.2:6758317-6758336 | None:intergenic | 35.0% | |
TGTTTCAAGAACTTGGGATT+AGG | + | chr7.2:6758170-6758189 | MS.gene23009:CDS | 35.0% | |
!! | AAATGGAGAAAGCTTTGTTG+AGG | + | chr7.2:6758233-6758252 | MS.gene23009:CDS | 35.0% |
ATGGCTTGATCAATTGAGTG+AGG | - | chr7.2:6758351-6758370 | None:intergenic | 40.0% | |
ATTATGTCCCTTCACCTAAG+TGG | + | chr7.2:6758322-6758341 | MS.gene23009:CDS | 40.0% | |
GAAATTGATCAAGACCCTGA+AGG | + | chr7.2:6758205-6758224 | MS.gene23009:CDS | 40.0% | |
TGGCTTGATCAATTGAGTGA+GGG | - | chr7.2:6758350-6758369 | None:intergenic | 40.0% | |
TTGAGGTTGGCATCTGAAAA+AGG | + | chr7.2:6758094-6758113 | MS.gene23009:CDS | 40.0% | |
!! | GAGAAAGCTTTGTTGAGGTT+AGG | + | chr7.2:6758238-6758257 | MS.gene23009:CDS | 40.0% |
AGAACTTGGGATTAGGCCTA+TGG | + | chr7.2:6758177-6758196 | MS.gene23009:CDS | 45.0% | |
GTTGGCATCTGAAAAAGGTG+TGG | + | chr7.2:6758099-6758118 | MS.gene23009:CDS | 45.0% | |
TCTCCATTTCCCTTCCTTCA+GGG | - | chr7.2:6758222-6758241 | None:intergenic | 45.0% | |
TGATCAAGACCCTGAAGGAA+GGG | + | chr7.2:6758210-6758229 | MS.gene23009:CDS | 45.0% | |
TTCATTGGAGGGCAACTGAT+GGG | + | chr7.2:6758286-6758305 | MS.gene23009:CDS | 45.0% | |
TTCCTGCTGTGTTCATTGGA+GGG | + | chr7.2:6758275-6758294 | MS.gene23009:CDS | 45.0% | |
TTCTCCATTTCCCTTCCTTC+AGG | - | chr7.2:6758223-6758242 | None:intergenic | 45.0% | |
TTGATCAAGACCCTGAAGGA+AGG | + | chr7.2:6758209-6758228 | MS.gene23009:CDS | 45.0% | |
AGACCCTGAAGGAAGGGAAA+TGG | + | chr7.2:6758216-6758235 | MS.gene23009:CDS | 50.0% | |
ATTGAGTGAGGGAGCCACTT+AGG | - | chr7.2:6758339-6758358 | None:intergenic | 50.0% | |
CCAATGAACACAGCAGGAAC+AGG | - | chr7.2:6758274-6758293 | None:intergenic | 50.0% | |
CCTGTTCCTGCTGTGTTCAT+TGG | + | chr7.2:6758271-6758290 | MS.gene23009:CDS | 50.0% | |
GTTCATTGGAGGGCAACTGA+TGG | + | chr7.2:6758285-6758304 | MS.gene23009:CDS | 50.0% | |
GTTCCTGCTGTGTTCATTGG+AGG | + | chr7.2:6758274-6758293 | MS.gene23009:CDS | 50.0% | |
TCATTGGAGGGCAACTGATG+GGG | + | chr7.2:6758287-6758306 | MS.gene23009:CDS | 50.0% | |
GAGGGAGCCACTTAGGTGAA+GGG | - | chr7.2:6758332-6758351 | None:intergenic | 55.0% | |
TGAGGGAGCCACTTAGGTGA+AGG | - | chr7.2:6758333-6758352 | None:intergenic | 55.0% | |
TGCCCTCCAATGAACACAGC+AGG | - | chr7.2:6758280-6758299 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 6758082 | 6758390 | 6758082 | ID=MS.gene23009 |
chr7.2 | mRNA | 6758082 | 6758390 | 6758082 | ID=MS.gene23009.t1;Parent=MS.gene23009 |
chr7.2 | exon | 6758082 | 6758390 | 6758082 | ID=MS.gene23009.t1.exon1;Parent=MS.gene23009.t1 |
chr7.2 | CDS | 6758082 | 6758390 | 6758082 | ID=cds.MS.gene23009.t1;Parent=MS.gene23009.t1 |
Gene Sequence |
Protein sequence |