Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29803.t1 | XP_003602090.2 | 93.8 | 771 | 43 | 1 | 1 | 766 | 66 | 836 | 0.00E+00 | 1389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29803.t1 | Q84W56 | 71.8 | 790 | 193 | 7 | 1 | 766 | 98 | 881 | 0.0e+00 | 1095.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29803.t1 | G7J5I7 | 93.8 | 771 | 43 | 1 | 1 | 766 | 66 | 836 | 0.0e+00 | 1389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29803.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050406 | MS.gene29803 | 0.814524 | 1.47E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene29803 | -0.811757 | 5.97E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene29803 | 0.84887 | 4.65E-60 | -1.69E-46 |
| MS.gene050812 | MS.gene29803 | 0.815807 | 7.65E-52 | -1.69E-46 |
| MS.gene051171 | MS.gene29803 | 0.840486 | 8.45E-58 | -1.69E-46 |
| MS.gene051240 | MS.gene29803 | 0.828394 | 9.21E-55 | -1.69E-46 |
| MS.gene051242 | MS.gene29803 | 0.836736 | 7.86E-57 | -1.69E-46 |
| MS.gene051244 | MS.gene29803 | 0.808918 | 2.45E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene29803 | 0.813852 | 2.08E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene29803 | 0.820167 | 7.91E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene29803 | 0.827919 | 1.20E-54 | -1.69E-46 |
| MS.gene052600 | MS.gene29803 | 0.829335 | 5.45E-55 | -1.69E-46 |
| MS.gene053330 | MS.gene29803 | 0.842171 | 3.04E-58 | -1.69E-46 |
| MS.gene053557 | MS.gene29803 | 0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene29803 | 0.805478 | 1.31E-49 | -1.69E-46 |
| MS.gene053971 | MS.gene29803 | 0.802162 | 6.39E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene29803 | 0.817093 | 3.94E-52 | -1.69E-46 |
| MS.gene055539 | MS.gene29803 | 0.815182 | 1.05E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene29803 | 0.833313 | 5.73E-56 | -1.69E-46 |
| MS.gene056633 | MS.gene29803 | 0.809703 | 1.66E-50 | -1.69E-46 |
| MS.gene056664 | MS.gene29803 | 0.821752 | 3.42E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene29803 | 0.806885 | 6.62E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene29803 | 0.811888 | 5.59E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene29803 | 0.805848 | 1.09E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene29803 | 0.809842 | 1.55E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene29803 | 0.858676 | 6.99E-63 | -1.69E-46 |
| MS.gene058276 | MS.gene29803 | 0.864059 | 1.60E-64 | -1.69E-46 |
| MS.gene058743 | MS.gene29803 | 0.853564 | 2.20E-61 | -1.69E-46 |
| MS.gene058746 | MS.gene29803 | 0.812621 | 3.87E-51 | -1.69E-46 |
| MS.gene058833 | MS.gene29803 | 0.815725 | 7.98E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene29803 | 0.830797 | 2.40E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene29803 | 0.807437 | 5.06E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene29803 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene060083 | MS.gene29803 | 0.834909 | 2.28E-56 | -1.69E-46 |
| MS.gene060407 | MS.gene29803 | 0.858679 | 6.98E-63 | -1.69E-46 |
| MS.gene061231 | MS.gene29803 | 0.803856 | 2.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29803.t1 | MTR_3g089020 | 95.850 | 771 | 27 | 1 | 1 | 766 | 66 | 836 | 0.0 | 1511 |
| MS.gene29803.t1 | MTR_4g103770 | 84.603 | 617 | 86 | 3 | 1 | 612 | 70 | 682 | 0.0 | 1075 |
| MS.gene29803.t1 | MTR_7g014365 | 88.372 | 43 | 5 | 0 | 646 | 688 | 203 | 245 | 2.03e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29803.t1 | AT5G63420 | 72.005 | 793 | 186 | 8 | 1 | 766 | 98 | 881 | 0.0 | 1124 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAAGATGCAAGATTTA+AGG | 0.149877 | 3.4:-73449546 | None:intergenic |
| GCCTTAAATCTTGCATCTTT+TGG | 0.181875 | 3.4:+73449545 | MS.gene29803:CDS |
| TTGGCTGGAAACACCTTAAA+AGG | 0.186376 | 3.4:+73451022 | MS.gene29803:CDS |
| TATTTGTTGGCATGTCTTTA+AGG | 0.202740 | 3.4:+73448472 | MS.gene29803:CDS |
| CAGGGGAATCGGATGAATTT+TGG | 0.207468 | 3.4:+73452179 | MS.gene29803:CDS |
| CAAATCTTTGTGGACATCTT+TGG | 0.240355 | 3.4:+73452525 | MS.gene29803:CDS |
| ATCCATGGATGAACATAAAA+AGG | 0.267555 | 3.4:+73451336 | MS.gene29803:CDS |
| ATTGGTGGTTTGGGTGAAAT+TGG | 0.278425 | 3.4:+73445438 | MS.gene29803:CDS |
| GATTCACTGGTTGTCCTTCC+AGG | 0.285382 | 3.4:-73448214 | None:intergenic |
| CAAGTGATTCATGCTCCTTC+AGG | 0.286343 | 3.4:-73450470 | None:intergenic |
| TTTCTTATAAATGTTGTATC+AGG | 0.286634 | 3.4:-73445847 | None:intergenic |
| CCATTACGTGTTCTTCCTAT+TGG | 0.296621 | 3.4:+73445420 | MS.gene29803:CDS |
| GAAGGCGATTTATCTGATTC+AGG | 0.300145 | 3.4:+73452160 | MS.gene29803:CDS |
| AAAGCTGCTGCCGATTTAAC+TGG | 0.300725 | 3.4:+73448334 | MS.gene29803:CDS |
| ATACAACATTTATAAGAAAA+TGG | 0.305949 | 3.4:+73445851 | MS.gene29803:CDS |
| CCTTGGAAAAGAAAATTTAC+AGG | 0.307438 | 3.4:+73450703 | MS.gene29803:CDS |
| GATGTAGATTTGATGCAAAC+TGG | 0.345615 | 3.4:-73448297 | None:intergenic |
| TGAAAGGAAGGATGGCTCTC+TGG | 0.354049 | 3.4:+73452446 | MS.gene29803:CDS |
| CTTCTAAATGTTGATATTCC+AGG | 0.354594 | 3.4:-73451313 | None:intergenic |
| AATAGAAGGGTTCTTTCTAA+TGG | 0.365515 | 3.4:+73450671 | MS.gene29803:CDS |
| TGTTCTTCCTATTGGTGGTT+TGG | 0.367711 | 3.4:+73445428 | MS.gene29803:CDS |
| ATCTTTGGCACTTAAATATG+AGG | 0.370175 | 3.4:+73452540 | MS.gene29803:CDS |
| ATCATATCGGTGCGTTGCCT+TGG | 0.376836 | 3.4:+73445917 | MS.gene29803:CDS |
| TTATTATATCAGGTATTTGT+TGG | 0.378839 | 3.4:+73448459 | MS.gene29803:intron |
| ATCGCAATGGCAATTACTTC+GGG | 0.381041 | 3.4:-73451223 | None:intergenic |
| GTTCTTCCTATTGGTGGTTT+GGG | 0.382494 | 3.4:+73445429 | MS.gene29803:CDS |
| TTTCACACTTGAGAAATAGA+AGG | 0.384172 | 3.4:+73450657 | MS.gene29803:CDS |
| GCATTTATTACCAGAGTTGA+TGG | 0.385749 | 3.4:-73448540 | None:intergenic |
| ATGCACCAGGTTATTAAGAA+TGG | 0.386575 | 3.4:+73450620 | MS.gene29803:intron |
| TTGTTTGCAGTGTGGTGGAC+TGG | 0.387215 | 3.4:-73451363 | None:intergenic |
| GGCAAATCCCACGCTGGTCC+TGG | 0.387256 | 3.4:+73451295 | MS.gene29803:CDS |
| GAATGAATTGTATGCTTGTT+GGG | 0.394201 | 3.4:+73445460 | MS.gene29803:CDS |
| CAACTTTCTCCCAGTTAAAT+CGG | 0.401807 | 3.4:-73448344 | None:intergenic |
| CTAGTTCTTCGTTGTTCTGA+TGG | 0.406463 | 3.4:+73447373 | MS.gene29803:CDS |
| TAGATGGCATCATTGTGATT+AGG | 0.412496 | 3.4:+73450889 | MS.gene29803:CDS |
| AATGAAAACTTACACACATC+TGG | 0.415170 | 3.4:+73449904 | MS.gene29803:CDS |
| AGAATGAGAATTGCATTAGA+TGG | 0.417290 | 3.4:+73450873 | MS.gene29803:CDS |
| ATTGGATCAACAATAGTTAT+GGG | 0.421279 | 3.4:+73449877 | MS.gene29803:CDS |
| GATTGGATCAACAATAGTTA+TGG | 0.427638 | 3.4:+73449876 | MS.gene29803:CDS |
| CTATTCTTCACACTGGGGAT+TGG | 0.430987 | 3.4:+73447398 | MS.gene29803:CDS |
| ATCACACGGGACTCATTACC+AGG | 0.431628 | 3.4:-73449829 | None:intergenic |
| GAATTACCACAAGATGTCTA+TGG | 0.437596 | 3.4:+73451053 | MS.gene29803:CDS |
| GAGAAAGAGACCACTACAAC+TGG | 0.440855 | 3.4:+73452133 | MS.gene29803:CDS |
| CATTTGAGATAGAACCAATC+AGG | 0.444198 | 3.4:+73447320 | MS.gene29803:CDS |
| CTGGACAATGCAAATCTTTG+TGG | 0.444645 | 3.4:+73452515 | MS.gene29803:CDS |
| ACATGCATATCGTGGAGAAT+TGG | 0.445598 | 3.4:+73449927 | MS.gene29803:CDS |
| GAATCACTTGGAAAATCAAC+TGG | 0.447489 | 3.4:+73450483 | MS.gene29803:CDS |
| TCTAATGGTTTCATTTCCCT+TGG | 0.447711 | 3.4:+73450686 | MS.gene29803:CDS |
| TATCGCAATGGCAATTACTT+CGG | 0.447759 | 3.4:-73451224 | None:intergenic |
| ACCAGAGTTGATGGGTCAAA+TGG | 0.450689 | 3.4:-73448531 | None:intergenic |
| TCATATCGGTGCGTTGCCTT+GGG | 0.452996 | 3.4:+73445918 | MS.gene29803:CDS |
| GGAATGAATTGTATGCTTGT+TGG | 0.453098 | 3.4:+73445459 | MS.gene29803:CDS |
| TTACGTGTTCTTCCTATTGG+TGG | 0.453954 | 3.4:+73445423 | MS.gene29803:CDS |
| GAGATAAACACAAAATTGTC+TGG | 0.454789 | 3.4:+73451274 | MS.gene29803:CDS |
| TTTATCTGATTCAGGGGAAT+CGG | 0.455159 | 3.4:+73452168 | MS.gene29803:CDS |
| AGTGATGGTGACAAAGCATT+TGG | 0.457642 | 3.4:+73450822 | MS.gene29803:CDS |
| ATCAGACATTTCTTCAGACT+TGG | 0.457953 | 3.4:-73452317 | None:intergenic |
| CTGATTGGTTCTATCTCAAA+TGG | 0.459887 | 3.4:-73447319 | None:intergenic |
| ATTTCACCCAAACCACCAAT+AGG | 0.461698 | 3.4:-73445435 | None:intergenic |
| ATTGACGAGACACCACTTGA+TGG | 0.463031 | 3.4:+73447508 | MS.gene29803:CDS |
| GTTACAATAAGCAGATCCTT+AGG | 0.463234 | 3.4:-73449395 | None:intergenic |
| TCAACTGATGATGCAATGAA+TGG | 0.463811 | 3.4:-73452205 | None:intergenic |
| GATCTGCTTATTGTAACAAC+TGG | 0.465028 | 3.4:+73449401 | MS.gene29803:CDS |
| TCAACAAATGTGCTCTCACC+TGG | 0.467892 | 3.4:+73448196 | MS.gene29803:CDS |
| GATGGGATCAGCAGAAGTCC+TGG | 0.469354 | 3.4:+73452496 | MS.gene29803:CDS |
| CCTTGGTAAGTTTGAAAGCA+TGG | 0.473674 | 3.4:-73449574 | None:intergenic |
| ATGAATCGCATATCAGAGAT+TGG | 0.474239 | 3.4:+73449859 | MS.gene29803:CDS |
| CGATTTAACTGGGAGAAAGT+TGG | 0.476469 | 3.4:+73448345 | MS.gene29803:CDS |
| AATCAGCTTCTTGACTTCCT+CGG | 0.476513 | 3.4:-73452386 | None:intergenic |
| CTCAGAGCTTGTTGGCTGAT+GGG | 0.478275 | 3.4:+73452479 | MS.gene29803:CDS |
| CACAAAGATTTGCATTGTCC+AGG | 0.480128 | 3.4:-73452514 | None:intergenic |
| TCTCAGAGCTTGTTGGCTGA+TGG | 0.481622 | 3.4:+73452478 | MS.gene29803:CDS |
| ATAGAATGAGTCACCCTGAT+TGG | 0.482517 | 3.4:-73447334 | None:intergenic |
| TTGGAAAATCAACTGGCATT+CGG | 0.486197 | 3.4:+73450490 | MS.gene29803:CDS |
| TCATCAGGTCATCCCAGCAT+TGG | 0.486824 | 3.4:+73446890 | MS.gene29803:intron |
| ATACAAAACAATATCTTCCT+TGG | 0.488079 | 3.4:-73449591 | None:intergenic |
| TCAAGAAGCTGATTGATTTG+CGG | 0.490229 | 3.4:+73452395 | MS.gene29803:CDS |
| CAATTCTCATTCTTTCATCA+AGG | 0.490742 | 3.4:-73450863 | None:intergenic |
| GACAAAGCATTTGGTACATC+CGG | 0.492657 | 3.4:+73450831 | MS.gene29803:CDS |
| ACAAAGAACAAGTTTGTCGC+TGG | 0.495185 | 3.4:+73447295 | MS.gene29803:CDS |
| GATGTCTATGGCTGGACAAA+GGG | 0.497228 | 3.4:+73451065 | MS.gene29803:CDS |
| AAGGCGATTTATCTGATTCA+GGG | 0.497243 | 3.4:+73452161 | MS.gene29803:CDS |
| CAAAAGTCCACTGGCTCACA+TGG | 0.497633 | 3.4:+73451144 | MS.gene29803:CDS |
| CATTCTATTCCTGACTGTTG+TGG | 0.499925 | 3.4:+73447349 | MS.gene29803:CDS |
| ACCTCTTGTTTGCAGTGTGG+TGG | 0.502821 | 3.4:-73451368 | None:intergenic |
| TTAGAAGCAGCTTGGAAGGA+TGG | 0.505273 | 3.4:+73448501 | MS.gene29803:CDS |
| AGGCACATTTCAGCTTCAAA+AGG | 0.507331 | 3.4:+73448259 | MS.gene29803:CDS |
| GATTTAAAGTTGTGAAAGGA+AGG | 0.508605 | 3.4:+73452434 | MS.gene29803:CDS |
| GAAAGGAAGGATGGCTCTCT+GGG | 0.509095 | 3.4:+73452447 | MS.gene29803:CDS |
| ACATTTCAGCTTCAAAAGGA+AGG | 0.510397 | 3.4:+73448263 | MS.gene29803:CDS |
| CTGAAGGAGCATGAATCACT+TGG | 0.511676 | 3.4:+73450471 | MS.gene29803:CDS |
| CGTTATATCCTCATTGATGC+TGG | 0.516389 | 3.4:+73445492 | MS.gene29803:CDS |
| TGGCTGGAAACACCTTAAAA+GGG | 0.519920 | 3.4:+73451023 | MS.gene29803:CDS |
| AGAGATATCTCAGAGCTTGT+TGG | 0.522256 | 3.4:+73452471 | MS.gene29803:CDS |
| TGCATCTTCCTTTACAATGG+AGG | 0.526281 | 3.4:+73446932 | MS.gene29803:CDS |
| TATTGATGCTTATGCACCTA+AGG | 0.528326 | 3.4:+73449379 | MS.gene29803:CDS |
| GACAGATTTAAAGTTGTGAA+AGG | 0.528331 | 3.4:+73452430 | MS.gene29803:CDS |
| GCATCAAATCTACATCGGAT+TGG | 0.529989 | 3.4:+73448304 | MS.gene29803:CDS |
| TTCATCAAGGAAGAGTTCAC+CGG | 0.530019 | 3.4:-73450850 | None:intergenic |
| TCAATTTGTCAGGTTATCCC+TGG | 0.531224 | 3.4:+73449811 | MS.gene29803:intron |
| CAGCATCAATGAGGATATAA+CGG | 0.531872 | 3.4:-73445491 | None:intergenic |
| GGACATACTTAGAAGCAGCT+TGG | 0.532316 | 3.4:+73448493 | MS.gene29803:CDS |
| ATCAACATTTAGAAGATCCA+TGG | 0.532606 | 3.4:+73451321 | MS.gene29803:CDS |
| TTGACGAGACACCACTTGAT+GGG | 0.533040 | 3.4:+73447509 | MS.gene29803:CDS |
| TCCATTTGACCCATCAACTC+TGG | 0.534282 | 3.4:+73448530 | MS.gene29803:CDS |
| AGAACTAGTCCACAACAGTC+AGG | 0.535143 | 3.4:-73447358 | None:intergenic |
| TACCACAAGATGTCTATGGC+TGG | 0.535188 | 3.4:+73451057 | MS.gene29803:CDS |
| TCTTCACACTGGGGATTGGA+AGG | 0.536502 | 3.4:+73447402 | MS.gene29803:CDS |
| CATGGTCATGAAGATCATAT+CGG | 0.538341 | 3.4:+73445904 | MS.gene29803:CDS |
| GGTGTATTGGAATCCAATGC+TGG | 0.538955 | 3.4:-73446903 | None:intergenic |
| GCCGAATACCTCCATTGTAA+AGG | 0.539763 | 3.4:-73446940 | None:intergenic |
| TAAAGTTGTGAAAGGAAGGA+TGG | 0.540086 | 3.4:+73452438 | MS.gene29803:CDS |
| ATCTGCCACAACAGATTCAC+TGG | 0.540628 | 3.4:-73448227 | None:intergenic |
| TTGTGGCAGATTCATTATTG+AGG | 0.541904 | 3.4:+73448239 | MS.gene29803:CDS |
| ATTAAGAATGGAGAGATGCT+TGG | 0.543149 | 3.4:+73450632 | MS.gene29803:CDS |
| ATACTTAGAAGCAGCTTGGA+AGG | 0.544162 | 3.4:+73448497 | MS.gene29803:CDS |
| TTAGAGGAACTCTCTAAAGA+AGG | 0.550937 | 3.4:+73447553 | MS.gene29803:CDS |
| CAAAGAACAAGTTTGTCGCT+GGG | 0.552337 | 3.4:+73447296 | MS.gene29803:CDS |
| CATTTCAGCTTCAAAAGGAA+GGG | 0.552543 | 3.4:+73448264 | MS.gene29803:CDS |
| GCCATTGCGATAGAAAATCC+TGG | 0.555157 | 3.4:+73451235 | MS.gene29803:CDS |
| CTGTCCCGTCAAAAGTCCAC+TGG | 0.559295 | 3.4:+73451135 | MS.gene29803:CDS |
| CATTTATTACCAGAGTTGAT+GGG | 0.561091 | 3.4:-73448539 | None:intergenic |
| GTCGGAGATGTTGAGGAAGA+TGG | 0.562067 | 3.4:+73451177 | MS.gene29803:CDS |
| TCACAACTTTAAATCTGTCA+CGG | 0.562346 | 3.4:-73452426 | None:intergenic |
| AGATGTTGAGGAAGATGGTG+AGG | 0.567241 | 3.4:+73451182 | MS.gene29803:CDS |
| GAACTGTGTCGGAGATGTTG+AGG | 0.569522 | 3.4:+73451170 | MS.gene29803:CDS |
| ATGGAACTATTCTTCACACT+GGG | 0.571280 | 3.4:+73447392 | MS.gene29803:CDS |
| GTCCAGCCATAGACATCTTG+TGG | 0.573025 | 3.4:-73451059 | None:intergenic |
| ACCACTACAACTGGAGCTGA+AGG | 0.573383 | 3.4:+73452142 | MS.gene29803:CDS |
| CTCTAAAGAAGGAGTAACAT+TGG | 0.574233 | 3.4:+73447564 | MS.gene29803:CDS |
| TTCACACTTGAGAAATAGAA+GGG | 0.575027 | 3.4:+73450658 | MS.gene29803:CDS |
| AGATGTCTATGGCTGGACAA+AGG | 0.582028 | 3.4:+73451064 | MS.gene29803:CDS |
| CAATGGTTATGTTTCACGAA+AGG | 0.585188 | 3.4:+73452246 | MS.gene29803:CDS |
| GCCTTCAGCTCCAGTTGTAG+TGG | 0.589034 | 3.4:-73452143 | None:intergenic |
| GTTCTTTCCATGTGAGCCAG+TGG | 0.589970 | 3.4:-73451151 | None:intergenic |
| AAGCTGCTGCCGATTTAACT+GGG | 0.591068 | 3.4:+73448335 | MS.gene29803:CDS |
| TGGTAATGAGTCCCGTGTGA+TGG | 0.593761 | 3.4:+73449831 | MS.gene29803:CDS |
| CCAATAGGAAGAACACGTAA+TGG | 0.600542 | 3.4:-73445420 | None:intergenic |
| AGCAGCTTGGAAGGATGGAA+AGG | 0.602363 | 3.4:+73448506 | MS.gene29803:CDS |
| TCACATGGAAAGAACTGTGT+CGG | 0.607611 | 3.4:+73451159 | MS.gene29803:CDS |
| CCATGCTTTCAAACTTACCA+AGG | 0.609185 | 3.4:+73449574 | MS.gene29803:CDS |
| GACAACCAGTGAATCTGTTG+TGG | 0.610763 | 3.4:+73448222 | MS.gene29803:CDS |
| TCCACCACACTGCAAACAAG+AGG | 0.611195 | 3.4:+73451367 | MS.gene29803:CDS |
| GTCTGAAGAAATGTCTGATG+CGG | 0.611515 | 3.4:+73452321 | MS.gene29803:CDS |
| CAAATGTGCTCTCACCTGGA+AGG | 0.615112 | 3.4:+73448200 | MS.gene29803:CDS |
| GATGGAACTATTCTTCACAC+TGG | 0.616053 | 3.4:+73447391 | MS.gene29803:CDS |
| GATGATGGCATTGACACGGA+AGG | 0.627007 | 3.4:+73452100 | MS.gene29803:intron |
| TGGAGAATACTTGTTCCTGA+AGG | 0.627983 | 3.4:+73450455 | MS.gene29803:CDS |
| TGCAGATGATGGCATTGACA+CGG | 0.630101 | 3.4:+73452096 | MS.gene29803:intron |
| GTTACCTCTTGTTTGCAGTG+TGG | 0.633512 | 3.4:-73451371 | None:intergenic |
| ATGTAGATTTGATGCAAACT+GGG | 0.634137 | 3.4:-73448296 | None:intergenic |
| GATTCATCATTTCCATCACA+CGG | 0.639799 | 3.4:-73449843 | None:intergenic |
| ATTTGAGATAGAACCAATCA+GGG | 0.643383 | 3.4:+73447321 | MS.gene29803:CDS |
| ATTCATCATTTCCATCACAC+GGG | 0.645095 | 3.4:-73449842 | None:intergenic |
| TTGATATTCCAGGACCAGCG+TGG | 0.651033 | 3.4:-73451303 | None:intergenic |
| AGGCGATTTATCTGATTCAG+GGG | 0.651319 | 3.4:+73452162 | MS.gene29803:CDS |
| TGATATTCCAGGACCAGCGT+GGG | 0.657450 | 3.4:-73451302 | None:intergenic |
| GTGTATTGGAATCCAATGCT+GGG | 0.657667 | 3.4:-73446902 | None:intergenic |
| AAATCAATCAAAGCAAACAA+TGG | 0.658404 | 3.4:+73452229 | MS.gene29803:CDS |
| TTGGATCAACAATAGTTATG+GGG | 0.659409 | 3.4:+73449878 | MS.gene29803:CDS |
| ACATCTGGACATGCATATCG+TGG | 0.659861 | 3.4:+73449919 | MS.gene29803:CDS |
| ACATGATACCAGCATCAATG+AGG | 0.660800 | 3.4:-73445500 | None:intergenic |
| AGTTTGCATCAAATCTACAT+CGG | 0.660918 | 3.4:+73448299 | MS.gene29803:CDS |
| TTGTCTGGCAAATCCCACGC+TGG | 0.665079 | 3.4:+73451289 | MS.gene29803:CDS |
| AAGATGGTGAGGAAGTACAG+TGG | 0.672062 | 3.4:+73451193 | MS.gene29803:CDS |
| GAAGCACTTGTTATAACACA+TGG | 0.674931 | 3.4:+73445886 | MS.gene29803:CDS |
| TGAGGAAGTACAGTGGTAAG+CGG | 0.677242 | 3.4:+73451200 | MS.gene29803:CDS |
| ATGCAGTTGAAATATAGTGA+TGG | 0.680617 | 3.4:+73450807 | MS.gene29803:intron |
| GCAAGATTTAAGGCAGCACG+TGG | 0.681321 | 3.4:-73449536 | None:intergenic |
| ATGTACAGAAGAAAATGTTG+CGG | 0.692780 | 3.4:-73450433 | None:intergenic |
| CAACTTTAAATCTGTCACGG+AGG | 0.723247 | 3.4:-73452423 | None:intergenic |
| ATAGGAAGAACACGTAATGG+CGG | 0.726743 | 3.4:-73445417 | None:intergenic |
| TCACACGGGACTCATTACCA+GGG | 0.727328 | 3.4:-73449828 | None:intergenic |
| TGGAACTATTCTTCACACTG+GGG | 0.745314 | 3.4:+73447393 | MS.gene29803:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 73445387 | 73452561 | 73445387 | ID=MS.gene29803 |
| chr3.4 | mRNA | 73445387 | 73452561 | 73445387 | ID=MS.gene29803.t1;Parent=MS.gene29803 |
| chr3.4 | exon | 73445387 | 73445529 | 73445387 | ID=MS.gene29803.t1.exon1;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73445387 | 73445529 | 73445387 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73445816 | 73445939 | 73445816 | ID=MS.gene29803.t1.exon2;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73445816 | 73445939 | 73445816 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73446897 | 73446953 | 73446897 | ID=MS.gene29803.t1.exon3;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73446897 | 73446953 | 73446897 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73447232 | 73447423 | 73447232 | ID=MS.gene29803.t1.exon4;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73447232 | 73447423 | 73447232 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73447508 | 73447585 | 73447508 | ID=MS.gene29803.t1.exon5;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73447508 | 73447585 | 73447508 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73448184 | 73448366 | 73448184 | ID=MS.gene29803.t1.exon6;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73448184 | 73448366 | 73448184 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73448471 | 73448551 | 73448471 | ID=MS.gene29803.t1.exon7;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73448471 | 73448551 | 73448471 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73449365 | 73449430 | 73449365 | ID=MS.gene29803.t1.exon8;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73449365 | 73449430 | 73449365 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73449530 | 73449622 | 73449530 | ID=MS.gene29803.t1.exon9;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73449530 | 73449622 | 73449530 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73449823 | 73449948 | 73449823 | ID=MS.gene29803.t1.exon10;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73449823 | 73449948 | 73449823 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73450423 | 73450521 | 73450423 | ID=MS.gene29803.t1.exon11;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73450423 | 73450521 | 73450423 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73450629 | 73450724 | 73450629 | ID=MS.gene29803.t1.exon12;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73450629 | 73450724 | 73450629 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73450813 | 73450910 | 73450813 | ID=MS.gene29803.t1.exon13;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73450813 | 73450910 | 73450813 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73450988 | 73451388 | 73450988 | ID=MS.gene29803.t1.exon14;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73450988 | 73451388 | 73450988 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| chr3.4 | exon | 73452101 | 73452561 | 73452101 | ID=MS.gene29803.t1.exon15;Parent=MS.gene29803.t1 |
| chr3.4 | CDS | 73452101 | 73452561 | 73452101 | ID=cds.MS.gene29803.t1;Parent=MS.gene29803.t1 |
| Gene Sequence |
| Protein sequence |
