AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31305


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31305.t1 MTR_2g094093 98.901 364 4 0 1 364 1 364 0.0 744
MS.gene31305.t1 MTR_4g108280 50.276 362 164 5 14 364 24 380 3.14e-123 360
MS.gene31305.t1 MTR_8g468030 50.142 351 162 4 22 364 152 497 1.73e-113 339
MS.gene31305.t1 MTR_5g039390 49.718 354 165 4 19 364 128 476 2.89e-113 338
MS.gene31305.t1 MTR_0345s0010 49.422 346 161 5 27 364 96 435 5.36e-112 333
MS.gene31305.t1 MTR_0105s0170 49.422 346 161 5 27 364 109 448 7.06e-112 333
MS.gene31305.t1 MTR_0105s0020 48.844 346 163 5 27 364 96 435 1.70e-111 332
MS.gene31305.t1 MTR_0105s0130 49.422 346 161 5 27 364 96 435 3.36e-111 332
MS.gene31305.t1 MTR_0105s0040 49.133 346 162 5 27 364 194 533 2.47e-110 332
MS.gene31305.t1 MTR_4g022400 48.295 352 170 4 20 364 68 414 8.85e-110 327
MS.gene31305.t1 MTR_0496s0010 47.977 346 160 6 27 364 78 411 2.78e-109 326
MS.gene31305.t1 MTR_1330s0010 50.789 317 147 3 27 335 109 424 2.99e-108 324
MS.gene31305.t1 MTR_4g022260 47.246 345 170 4 27 364 78 417 3.78e-108 323
MS.gene31305.t1 MTR_7g029290 39.130 345 202 6 24 362 59 401 4.94e-76 240
MS.gene31305.t1 MTR_6g023805 35.775 355 207 6 21 362 57 403 2.38e-70 226
MS.gene31305.t1 MTR_4g114110 30.420 286 177 9 13 286 74 349 2.70e-28 115
MS.gene31305.t1 MTR_8g085600 30.241 291 183 11 8 287 65 346 2.16e-26 109
MS.gene31305.t1 MTR_3g085570 25.610 328 211 9 15 325 30 341 1.54e-21 95.1
MS.gene31305.t1 MTR_8g080370 26.646 319 206 9 17 320 47 352 3.47e-21 94.4
MS.gene31305.t1 MTR_2g019230 26.688 311 205 8 20 315 52 354 3.75e-19 88.6
MS.gene31305.t1 MTR_7g095220 27.245 323 188 13 20 321 4 300 3.43e-18 85.1
MS.gene31305.t1 MTR_2g008440 23.913 368 199 12 14 303 37 401 5.39e-18 85.5
MS.gene31305.t1 MTR_4g011900 24.332 337 205 10 17 319 2 322 1.87e-17 83.2
MS.gene31305.t1 MTR_0105s0060 43.956 91 46 2 274 364 20 105 7.93e-16 73.2
MS.gene31305.t1 MTR_3g073640 26.336 262 164 8 2 243 14 266 8.78e-16 79.0
MS.gene31305.t1 MTR_3g094850 25.788 349 193 13 17 336 6 317 1.93e-14 73.9
MS.gene31305.t1 MTR_8g085650 23.735 257 157 5 20 244 7 256 3.70e-14 73.2
MS.gene31305.t1 MTR_1g043110 60.784 51 19 1 302 351 7 57 7.88e-12 63.2
MS.gene31305.t1 MTR_8g030940 22.939 279 197 8 17 284 22 293 2.35e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31305.t1 AT5G60570 71.468 361 102 1 5 364 33 393 0.0 537
MS.gene31305.t1 AT5G60570 71.468 361 102 1 5 364 33 393 0.0 537
MS.gene31305.t1 AT5G60570 71.468 361 102 1 5 364 33 393 0.0 537
MS.gene31305.t1 AT1G26930 47.861 374 177 5 2 364 55 421 1.01e-117 348
MS.gene31305.t1 AT1G14330 47.967 369 180 6 2 364 79 441 7.32e-113 336
MS.gene31305.t1 AT2G02870 47.326 374 183 5 1 364 98 467 2.44e-112 335
MS.gene31305.t1 AT2G02870 47.326 374 183 5 1 364 98 467 2.44e-112 335
MS.gene31305.t1 AT2G02870 47.326 374 183 5 1 364 98 467 2.44e-112 335
MS.gene31305.t1 AT1G74510 46.499 357 171 4 24 364 99 451 1.02e-105 318
MS.gene31305.t1 AT1G74510 46.499 357 171 4 24 364 99 451 1.02e-105 318
MS.gene31305.t1 AT1G74510 46.499 357 171 4 24 364 99 451 1.02e-105 318
MS.gene31305.t1 AT1G26930 39.305 374 157 7 2 364 55 369 6.12e-82 254
MS.gene31305.t1 AT3G27150 39.660 353 199 7 21 362 71 420 2.53e-80 252
MS.gene31305.t1 AT3G27150 39.660 353 199 7 21 362 71 420 2.53e-80 252
MS.gene31305.t1 AT5G40680 35.475 358 205 7 21 362 66 413 4.82e-68 220
MS.gene31305.t1 AT1G55270 29.932 294 180 11 8 287 66 347 1.15e-25 107
MS.gene31305.t1 AT3G63220 26.524 328 198 11 13 321 4 307 2.41e-25 105
MS.gene31305.t1 AT3G63220 26.524 328 198 11 13 321 4 307 2.41e-25 105
MS.gene31305.t1 AT3G63220 26.791 321 192 11 20 321 4 300 4.92e-25 104
MS.gene31305.t1 AT1G16250 23.529 323 223 7 17 317 5 325 3.49e-23 99.8
MS.gene31305.t1 AT1G16250 23.529 323 223 7 17 317 5 325 3.49e-23 99.8
MS.gene31305.t1 AT1G67480 25.478 314 211 8 17 318 36 338 7.66e-22 95.9
MS.gene31305.t1 AT1G67480 25.478 314 211 8 17 318 36 338 7.66e-22 95.9
MS.gene31305.t1 AT1G67480 25.478 314 211 8 17 318 36 338 7.66e-22 95.9
MS.gene31305.t1 AT1G15670 27.746 346 198 15 20 330 3 331 1.34e-16 80.5
MS.gene31305.t1 AT3G61350 24.779 339 217 13 19 334 20 343 3.95e-16 79.3
MS.gene31305.t1 AT3G61350 24.779 339 217 13 19 334 20 343 3.95e-16 79.3
MS.gene31305.t1 AT1G80440 24.771 327 199 11 20 316 3 312 2.64e-15 76.6
MS.gene31305.t1 AT1G22040 24.513 359 192 15 20 303 43 397 4.16e-15 76.6
MS.gene31305.t1 AT5G02980 27.928 222 113 7 16 237 9 183 2.65e-14 73.6
MS.gene31305.t1 AT1G30090 24.912 285 195 7 18 288 51 330 5.73e-14 73.2
MS.gene31305.t1 AT3G59940 26.936 297 162 10 20 261 15 311 1.87e-13 71.6
MS.gene31305.t1 AT2G21950 23.200 375 248 13 9 359 9 367 5.09e-13 70.1
MS.gene31305.t1 AT5G03000 28.448 232 141 8 19 231 38 263 5.43e-12 66.6
MS.gene31305.t1 AT1G27420 21.646 328 201 11 20 313 10 315 2.38e-11 64.7
MS.gene31305.t1 AT4G19870 27.570 214 127 5 26 238 35 221 6.42e-11 63.9
MS.gene31305.t1 AT4G19870 27.570 214 127 5 26 238 35 221 6.42e-11 63.9
MS.gene31305.t1 AT1G19460 22.840 324 205 9 17 317 51 352 8.41e-11 63.5

Find 111 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGTAGTGGTTATTTATA+TGG 0.196933 2.4:-8164734 MS.gene31305:CDS
TGTGGAACATTTGGTTTATT+TGG 0.199868 2.4:-8164690 MS.gene31305:CDS
CACTGTCTTGTATTAATAAA+AGG 0.245075 2.4:-8164769 MS.gene31305:CDS
CCATCCCTGACACCGGATTT+AGG 0.245877 2.4:+8163903 None:intergenic
TGGCTGGGGCCTTGCTTTCA+AGG 0.285708 2.4:-8164003 MS.gene31305:CDS
AACCAACCTCGCTGTTTGTT+TGG 0.309371 2.4:-8164455 MS.gene31305:CDS
AAAGAACACTTGGAATGAAT+TGG 0.319362 2.4:-8164057 MS.gene31305:CDS
GGGCTGATTCTTCAAATGGC+TGG 0.323493 2.4:-8164019 MS.gene31305:CDS
GGCTGATTCTTCAAATGGCT+GGG 0.327405 2.4:-8164018 MS.gene31305:CDS
GGCTGTGGGTTGTGAACTCT+TGG 0.337719 2.4:-8164558 MS.gene31305:CDS
AGCACGATAGCTTCACCTTC+TGG 0.354930 2.4:+8163939 None:intergenic
GCCGGTGGAAGTGATAAATA+TGG 0.355398 2.4:-8164401 MS.gene31305:CDS
ATTGGGGAGGCTCCCAGTTC+GGG 0.361540 2.4:-8164039 MS.gene31305:CDS
ATTGGGAGTTGTGGAACATT+TGG 0.362570 2.4:-8164699 MS.gene31305:CDS
TATGGGTTGCGGAAAGAATT+GGG 0.363669 2.4:-8164716 MS.gene31305:CDS
TCAGTAGTGGTTATTTATAT+GGG 0.364286 2.4:-8164733 MS.gene31305:CDS
CACTCATCGCACGGTATCTT+AGG 0.371909 2.4:+8164608 None:intergenic
ATATGGGTTGCGGAAAGAAT+TGG 0.372232 2.4:-8164717 MS.gene31305:CDS
TTGCCCTCAATTGTCTCGCT+TGG 0.372370 2.4:-8164814 MS.gene31305:CDS
AAGAACACTTGGAATGAATT+GGG 0.376731 2.4:-8164056 MS.gene31305:CDS
GACGGTAAATTCTATGTTAT+CGG 0.385842 2.4:-8164275 MS.gene31305:CDS
TCGGTTTGAAGGAGCATGTC+GGG 0.388214 2.4:-8163860 MS.gene31305:CDS
GGTGTCCTAAATCCGGTGTC+AGG 0.395086 2.4:-8163908 MS.gene31305:CDS
AAGAAGTTGGAGGAAAATAG+AGG 0.402405 2.4:-8164195 MS.gene31305:CDS
TGCCCTCAATTGTCTCGCTT+GGG 0.408983 2.4:-8164813 MS.gene31305:CDS
TTTGAAGAATCAGCCCGAAC+TGG 0.411166 2.4:+8164026 None:intergenic
GTATTAATAAAAGGTATAGT+AGG 0.411880 2.4:-8164760 MS.gene31305:CDS
CTACGCGGTGTGTGCATGTT+TGG 0.416639 2.4:+8164320 None:intergenic
GTTCGGGCTGATTCTTCAAA+TGG 0.420110 2.4:-8164023 MS.gene31305:CDS
AATTGGGGAGGCTCCCAGTT+CGG 0.420940 2.4:-8164040 MS.gene31305:CDS
GGCCTTGCTTTCAAGGCTTG+TGG 0.422359 2.4:-8163996 MS.gene31305:CDS
TTGTTTGGATCTAGTAGTCT+TGG 0.429145 2.4:-8164440 MS.gene31305:CDS
AATTGATGGAGTTCGCCATT+TGG 0.441296 2.4:-8164523 MS.gene31305:CDS
ATGATCTTTCAACAAGAAGT+TGG 0.446580 2.4:-8164208 MS.gene31305:CDS
TTTAGTTGTGGGTGGACAAA+GGG 0.453737 2.4:-8163964 MS.gene31305:CDS
CAGCGAGGTTGGTTCATCTC+TGG 0.457367 2.4:+8164464 None:intergenic
AAGCTATCGTGCTGAATTCA+TGG 0.466217 2.4:-8163929 MS.gene31305:CDS
TTGGCAGGTACTCGGTTTGA+AGG 0.470109 2.4:-8163871 MS.gene31305:CDS
TCAGGGATGGCATCATTGAT+TGG 0.476602 2.4:-8163890 MS.gene31305:CDS
TGCTCAAGCACCTCCACTTG+TGG 0.477930 2.4:-8164147 MS.gene31305:CDS
CTCAATTGTCTCGCTTGGGT+TGG 0.478795 2.4:-8164809 MS.gene31305:CDS
TCCATATTTATCACTTCCAC+CGG 0.480339 2.4:+8164400 None:intergenic
GGTTCAATTGCTATTGTAGC+CGG 0.481224 2.4:-8164419 MS.gene31305:CDS
CCAGGGAGAAGCGAATCATT+TGG 0.482859 2.4:+8164851 None:intergenic
ATCATTGATTGGCAGGTACT+CGG 0.486116 2.4:-8163879 MS.gene31305:CDS
TCAAACGCCACCCATCCTCT+TGG 0.488532 2.4:+8164659 None:intergenic
GGATGGCATCATTGATTGGC+AGG 0.490041 2.4:-8163886 MS.gene31305:CDS
GGACAAAGAGTCCTTGGCTG+TGG 0.495417 2.4:-8164573 MS.gene31305:CDS
TGAGCACCCACATTAACATA+TGG 0.504068 2.4:+8164164 None:intergenic
TTGACCCTACCATAGGTAGA+TGG 0.507495 2.4:-8164640 MS.gene31305:CDS
CAACCCAAGCGAGACAATTG+AGG 0.507498 2.4:+8164810 None:intergenic
ACAAGACAGTGACGCGTGAT+CGG 0.508795 2.4:+8164781 None:intergenic
CCACGCGGACAAAGAGTCCT+TGG 0.511167 2.4:-8164579 MS.gene31305:CDS
AATTCATGGTGTCCTAAATC+CGG 0.511637 2.4:-8163915 MS.gene31305:CDS
CTCCACAAGCCTTGAAAGCA+AGG 0.517282 2.4:+8163994 None:intergenic
CAGAGGGAAGGAGTGAATGA+TGG 0.519298 2.4:-8164890 MS.gene31305:CDS
GAATCATTTGGTCTATGTCT+AGG 0.523572 2.4:+8164863 None:intergenic
ACCTCCACTTGTGGCAGTTG+TGG 0.526349 2.4:-8164138 MS.gene31305:CDS
GTGGTTATTTATATGGGTTG+CGG 0.529229 2.4:-8164727 MS.gene31305:CDS
CTTAAAATGGATCAGAGGGA+AGG 0.531777 2.4:-8164902 None:intergenic
CAACGCCATCCATCTACCTA+TGG 0.534689 2.4:+8164631 None:intergenic
ATGACTCTGCATCATGTACA+TGG 0.536787 2.4:-8164352 MS.gene31305:CDS
AATCAAGCTATACTTCCAAA+TGG 0.541475 2.4:+8164508 None:intergenic
AACCCAAGCGAGACAATTGA+GGG 0.543072 2.4:+8164811 None:intergenic
CTCGGTTTGAAGGAGCATGT+CGG 0.543892 2.4:-8163861 MS.gene31305:CDS
TTGAAGAATCAGCCCGAACT+GGG 0.544400 2.4:+8164027 None:intergenic
ATAGCTTGATTTGCCGTCGT+TGG 0.547592 2.4:-8164496 MS.gene31305:CDS
GCAACATCATCGATCAGACC+AGG 0.551069 2.4:+8164833 None:intergenic
ATCCAAACAAACAGCGAGGT+TGG 0.552845 2.4:+8164453 None:intergenic
ATCTTTCAACAAGAAGTTGG+AGG 0.559527 2.4:-8164205 MS.gene31305:CDS
ACAACTGTTTCATTAACTTG+TGG 0.560696 2.4:-8164239 MS.gene31305:CDS
CCTAAATCCGGTGTCAGGGA+TGG 0.560965 2.4:-8163903 MS.gene31305:CDS
CCAAATGATTCGCTTCTCCC+TGG 0.562574 2.4:-8164851 MS.gene31305:CDS
TATAGTAGGTTGATCAGTAG+TGG 0.567034 2.4:-8164746 MS.gene31305:CDS
GCTGATTCTTCAAATGGCTG+GGG 0.569460 2.4:-8164017 MS.gene31305:CDS
TGGTTTGTGATCCAAGAGGA+TGG 0.572503 2.4:-8164670 MS.gene31305:CDS
AGAAGTTGGAGGAAAATAGA+GGG 0.574262 2.4:-8164194 MS.gene31305:CDS
GGTGGACAAAGGGGTCCAGA+AGG 0.576618 2.4:-8163954 MS.gene31305:CDS
GACAAAGAGTCCTTGGCTGT+GGG 0.576875 2.4:-8164572 MS.gene31305:CDS
GCGGAAAGAATTGGGAGTTG+TGG 0.576918 2.4:-8164708 MS.gene31305:CDS
GTGCTGTTATGAGCTGTTGA+GGG 0.579091 2.4:-8163821 None:intergenic
TATGTATCCATATGTTAATG+TGG 0.581465 2.4:-8164171 MS.gene31305:CDS
TCAATTGCTATTGTAGCCGG+TGG 0.583147 2.4:-8164416 MS.gene31305:CDS
GTGTCCTAAATCCGGTGTCA+GGG 0.587917 2.4:-8163907 MS.gene31305:CDS
GGTAAATTCTATGTTATCGG+TGG 0.593344 2.4:-8164272 MS.gene31305:CDS
ATAACAAGCAAAAGAACACT+TGG 0.593822 2.4:-8164067 MS.gene31305:CDS
TCCACAACTGCCACAAGTGG+AGG 0.600198 2.4:+8164137 None:intergenic
AATGATGCCATCCCTGACAC+CGG 0.601414 2.4:+8163896 None:intergenic
GGTTTGTGATCCAAGAGGAT+GGG 0.603205 2.4:-8164669 MS.gene31305:CDS
CCATCCATCTACCTATGGTA+GGG 0.606052 2.4:+8164636 None:intergenic
TGTGCTGTTATGAGCTGTTG+AGG 0.607927 2.4:-8163822 None:intergenic
CCCTACCATAGGTAGATGGA+TGG 0.610147 2.4:-8164636 MS.gene31305:CDS
GCCATCCATCTACCTATGGT+AGG 0.612392 2.4:+8164635 None:intergenic
GAGTTCACAACCCACAGCCA+AGG 0.616056 2.4:+8164562 None:intergenic
TTATCCACAACTGCCACAAG+TGG 0.623897 2.4:+8164134 None:intergenic
AGAACACTTGGAATGAATTG+GGG 0.627130 2.4:-8164055 MS.gene31305:CDS
GTGGCGTTTGACCCTACCAT+AGG 0.627159 2.4:-8164647 MS.gene31305:CDS
ATGTATCCATATGTTAATGT+GGG 0.634893 2.4:-8164170 MS.gene31305:CDS
CGGTTTGAAGGAGCATGTCG+GGG 0.636704 2.4:-8163859 MS.gene31305:CDS
CCAAGGACTCTTTGTCCGCG+TGG 0.654382 2.4:+8164579 None:intergenic
TGGTTAAAACACTCATCGCA+CGG 0.658387 2.4:+8164599 None:intergenic
AGTTGAGCACTTAACTAACA+TGG 0.659156 2.4:-8164099 MS.gene31305:CDS
ACACTTGGAATGAATTGGGG+AGG 0.662795 2.4:-8164052 MS.gene31305:CDS
TTGTGATCCAAGAGGATGGG+TGG 0.673255 2.4:-8164666 MS.gene31305:CDS
CAACATCATCGATCAGACCA+GGG 0.673678 2.4:+8164834 None:intergenic
CTGGACACTTCAACCAACGA+CGG 0.676455 2.4:+8164483 None:intergenic
TTAGTTGTGGGTGGACAAAG+GGG 0.688721 2.4:-8163963 MS.gene31305:CDS
TATTTGGTTTGTGATCCAAG+AGG 0.692041 2.4:-8164674 MS.gene31305:CDS
TGACTCTGCATCATGTACAT+GGG 0.735594 2.4:-8164351 MS.gene31305:CDS
AAACTAGAGCACAATCTACG+CGG 0.755040 2.4:+8164305 None:intergenic
CTAGATCCAAACAAACAGCG+AGG 0.779810 2.4:+8164449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTAATAAAAGGTATAGT+AGG - chr2.4:8163960-8163979 MS.gene31305:CDS 20.0%
! ATCAGTAGTGGTTATTTATA+TGG - chr2.4:8163986-8164005 MS.gene31305:CDS 25.0%
! ATGTATCCATATGTTAATGT+GGG - chr2.4:8164550-8164569 MS.gene31305:CDS 25.0%
! CACTGTCTTGTATTAATAAA+AGG - chr2.4:8163951-8163970 MS.gene31305:CDS 25.0%
! TATGTATCCATATGTTAATG+TGG - chr2.4:8164549-8164568 MS.gene31305:CDS 25.0%
! TCAGTAGTGGTTATTTATAT+GGG - chr2.4:8163987-8164006 MS.gene31305:CDS 25.0%
!!! ATTGTGCTCTAGTTTTTTTA+TGG - chr2.4:8164423-8164442 MS.gene31305:CDS 25.0%
AAAGAACACTTGGAATGAAT+TGG - chr2.4:8164663-8164682 MS.gene31305:CDS 30.0%
AAGAACACTTGGAATGAATT+GGG - chr2.4:8164664-8164683 MS.gene31305:CDS 30.0%
AATCAAGCTATACTTCCAAA+TGG + chr2.4:8164215-8164234 None:intergenic 30.0%
ATAACAAGCAAAAGAACACT+TGG - chr2.4:8164653-8164672 MS.gene31305:CDS 30.0%
ATGATCTTTCAACAAGAAGT+TGG - chr2.4:8164512-8164531 MS.gene31305:CDS 30.0%
GACGGTAAATTCTATGTTAT+CGG - chr2.4:8164445-8164464 MS.gene31305:CDS 30.0%
! ACAACTGTTTCATTAACTTG+TGG - chr2.4:8164481-8164500 MS.gene31305:CDS 30.0%
! TGTGGAACATTTGGTTTATT+TGG - chr2.4:8164030-8164049 MS.gene31305:CDS 30.0%
!! GGAGATAAACTTTTAGTTGT+GGG - chr2.4:8164745-8164764 MS.gene31305:CDS 30.0%
!! TGGAGATAAACTTTTAGTTG+TGG - chr2.4:8164744-8164763 MS.gene31305:CDS 30.0%
!!! TGCTCTAGTTTTTTTATGGA+CGG - chr2.4:8164427-8164446 MS.gene31305:CDS 30.0%
AAGAAGTTGGAGGAAAATAG+AGG - chr2.4:8164525-8164544 MS.gene31305:CDS 35.0%
AATTCATGGTGTCCTAAATC+CGG - chr2.4:8164805-8164824 MS.gene31305:CDS 35.0%
AGAACACTTGGAATGAATTG+GGG - chr2.4:8164665-8164684 MS.gene31305:CDS 35.0%
AGAAGTTGGAGGAAAATAGA+GGG - chr2.4:8164526-8164545 MS.gene31305:CDS 35.0%
AGTTGAGCACTTAACTAACA+TGG - chr2.4:8164621-8164640 MS.gene31305:CDS 35.0%
ATCTTTCAACAAGAAGTTGG+AGG - chr2.4:8164515-8164534 MS.gene31305:CDS 35.0%
GAATCATTTGGTCTATGTCT+AGG + chr2.4:8163860-8163879 None:intergenic 35.0%
GGTAAATTCTATGTTATCGG+TGG - chr2.4:8164448-8164467 MS.gene31305:CDS 35.0%
TCCATATTTATCACTTCCAC+CGG + chr2.4:8164323-8164342 None:intergenic 35.0%
TTGTTTGGATCTAGTAGTCT+TGG - chr2.4:8164280-8164299 MS.gene31305:CDS 35.0%
! GTGGTTATTTATATGGGTTG+CGG - chr2.4:8163993-8164012 MS.gene31305:CDS 35.0%
!! GATAAACTTTTAGTTGTGGG+TGG - chr2.4:8164748-8164767 MS.gene31305:CDS 35.0%
!! TATAGTAGGTTGATCAGTAG+TGG - chr2.4:8163974-8163993 MS.gene31305:CDS 35.0%
!! TATTTGGTTTGTGATCCAAG+AGG - chr2.4:8164046-8164065 MS.gene31305:CDS 35.0%
!!! TGAACTCTTGGTTTTTGGTA+GGG - chr2.4:8164174-8164193 MS.gene31305:CDS 35.0%
AAACTAGAGCACAATCTACG+CGG + chr2.4:8164418-8164437 None:intergenic 40.0%
AAGCTATCGTGCTGAATTCA+TGG - chr2.4:8164791-8164810 MS.gene31305:CDS 40.0%
AATTGATGGAGTTCGCCATT+TGG - chr2.4:8164197-8164216 MS.gene31305:CDS 40.0%
ATGACTCTGCATCATGTACA+TGG - chr2.4:8164368-8164387 MS.gene31305:CDS 40.0%
ATTGGGAGTTGTGGAACATT+TGG - chr2.4:8164021-8164040 MS.gene31305:CDS 40.0%
TGACTCTGCATCATGTACAT+GGG - chr2.4:8164369-8164388 MS.gene31305:CDS 40.0%
TGAGCACCCACATTAACATA+TGG + chr2.4:8164559-8164578 None:intergenic 40.0%
TGGTTAAAACACTCATCGCA+CGG + chr2.4:8164124-8164143 None:intergenic 40.0%
TTTAGTTGTGGGTGGACAAA+GGG - chr2.4:8164756-8164775 MS.gene31305:CDS 40.0%
! ATATGGGTTGCGGAAAGAAT+TGG - chr2.4:8164003-8164022 MS.gene31305:CDS 40.0%
! ATCATTGATTGGCAGGTACT+CGG - chr2.4:8164841-8164860 MS.gene31305:CDS 40.0%
! GGTTCAATTGCTATTGTAGC+CGG - chr2.4:8164301-8164320 MS.gene31305:CDS 40.0%
! TATGGGTTGCGGAAAGAATT+GGG - chr2.4:8164004-8164023 MS.gene31305:CDS 40.0%
!! GGTTGTGAACTCTTGGTTTT+TGG - chr2.4:8164169-8164188 MS.gene31305:CDS 40.0%
!! TTTTAGTTGTGGGTGGACAA+AGG - chr2.4:8164755-8164774 MS.gene31305:CDS 40.0%
!!! GGTTTTTGGTAGGGAATTGA+TGG - chr2.4:8164183-8164202 MS.gene31305:CDS 40.0%
!!! GTGAACTCTTGGTTTTTGGT+AGG - chr2.4:8164173-8164192 MS.gene31305:CDS 40.0%
AACCAACCTCGCTGTTTGTT+TGG - chr2.4:8164265-8164284 MS.gene31305:CDS 45.0%
AACCCAAGCGAGACAATTGA+GGG + chr2.4:8163912-8163931 None:intergenic 45.0%
ACACTTGGAATGAATTGGGG+AGG - chr2.4:8164668-8164687 MS.gene31305:CDS 45.0%
ATCCAAACAAACAGCGAGGT+TGG + chr2.4:8164270-8164289 None:intergenic 45.0%
CAACATCATCGATCAGACCA+GGG + chr2.4:8163889-8163908 None:intergenic 45.0%
CCATCCATCTACCTATGGTA+GGG + chr2.4:8164087-8164106 None:intergenic 45.0%
CTAGATCCAAACAAACAGCG+AGG + chr2.4:8164274-8164293 None:intergenic 45.0%
GCCGGTGGAAGTGATAAATA+TGG - chr2.4:8164319-8164338 MS.gene31305:CDS 45.0%
GGTTTGTGATCCAAGAGGAT+GGG - chr2.4:8164051-8164070 MS.gene31305:CDS 45.0%
TCAGGGATGGCATCATTGAT+TGG - chr2.4:8164830-8164849 MS.gene31305:CDS 45.0%
TTAGTTGTGGGTGGACAAAG+GGG - chr2.4:8164757-8164776 MS.gene31305:CDS 45.0%
TTATCCACAACTGCCACAAG+TGG + chr2.4:8164589-8164608 None:intergenic 45.0%
TTGAAGAATCAGCCCGAACT+GGG + chr2.4:8164696-8164715 None:intergenic 45.0%
TTGACCCTACCATAGGTAGA+TGG - chr2.4:8164080-8164099 MS.gene31305:CDS 45.0%
TTTGAAGAATCAGCCCGAAC+TGG + chr2.4:8164697-8164716 None:intergenic 45.0%
! GCTGATTCTTCAAATGGCTG+GGG - chr2.4:8164703-8164722 MS.gene31305:CDS 45.0%
! GGCTGATTCTTCAAATGGCT+GGG - chr2.4:8164702-8164721 MS.gene31305:CDS 45.0%
! GTTCGGGCTGATTCTTCAAA+TGG - chr2.4:8164697-8164716 MS.gene31305:CDS 45.0%
! TCAATTGCTATTGTAGCCGG+TGG - chr2.4:8164304-8164323 MS.gene31305:CDS 45.0%
! TGGTTTGTGATCCAAGAGGA+TGG - chr2.4:8164050-8164069 MS.gene31305:CDS 45.0%
!! ATAGCTTGATTTGCCGTCGT+TGG - chr2.4:8164224-8164243 MS.gene31305:CDS 45.0%
!!! CGATGAGTGTTTTAACCACG+CGG - chr2.4:8164126-8164145 MS.gene31305:CDS 45.0%
AATGATGCCATCCCTGACAC+CGG + chr2.4:8164827-8164846 None:intergenic 50.0%
ACAAGACAGTGACGCGTGAT+CGG + chr2.4:8163942-8163961 None:intergenic 50.0%
AGCACGATAGCTTCACCTTC+TGG + chr2.4:8164784-8164803 None:intergenic 50.0%
CAACCCAAGCGAGACAATTG+AGG + chr2.4:8163913-8163932 None:intergenic 50.0%
CAACGCCATCCATCTACCTA+TGG + chr2.4:8164092-8164111 None:intergenic 50.0%
CACTCATCGCACGGTATCTT+AGG + chr2.4:8164115-8164134 None:intergenic 50.0%
CAGAGGGAAGGAGTGAATGA+TGG - chr2.4:8163830-8163849 MS.gene31305:CDS 50.0%
CCAAATGATTCGCTTCTCCC+TGG - chr2.4:8163869-8163888 MS.gene31305:CDS 50.0%
CCAGGGAGAAGCGAATCATT+TGG + chr2.4:8163872-8163891 None:intergenic 50.0%
CCCTACCATAGGTAGATGGA+TGG - chr2.4:8164084-8164103 MS.gene31305:CDS 50.0%
CTCAATTGTCTCGCTTGGGT+TGG - chr2.4:8163911-8163930 MS.gene31305:CDS 50.0%
CTCCACAAGCCTTGAAAGCA+AGG + chr2.4:8164729-8164748 None:intergenic 50.0%
CTGGACACTTCAACCAACGA+CGG + chr2.4:8164240-8164259 None:intergenic 50.0%
GACAAAGAGTCCTTGGCTGT+GGG - chr2.4:8164148-8164167 MS.gene31305:CDS 50.0%
GCAACATCATCGATCAGACC+AGG + chr2.4:8163890-8163909 None:intergenic 50.0%
GCCATCCATCTACCTATGGT+AGG + chr2.4:8164088-8164107 None:intergenic 50.0%
GCGGAAAGAATTGGGAGTTG+TGG - chr2.4:8164012-8164031 MS.gene31305:CDS 50.0%
TGCCCTCAATTGTCTCGCTT+GGG - chr2.4:8163907-8163926 MS.gene31305:CDS 50.0%
TTGCCCTCAATTGTCTCGCT+TGG - chr2.4:8163906-8163925 MS.gene31305:CDS 50.0%
TTGTGATCCAAGAGGATGGG+TGG - chr2.4:8164054-8164073 MS.gene31305:CDS 50.0%
! CTCGGTTTGAAGGAGCATGT+CGG - chr2.4:8164859-8164878 MS.gene31305:CDS 50.0%
! GGATGGCATCATTGATTGGC+AGG - chr2.4:8164834-8164853 MS.gene31305:CDS 50.0%
! GGGCTGATTCTTCAAATGGC+TGG - chr2.4:8164701-8164720 MS.gene31305:CDS 50.0%
! GTGTCCTAAATCCGGTGTCA+GGG - chr2.4:8164813-8164832 MS.gene31305:CDS 50.0%
! TCGGTTTGAAGGAGCATGTC+GGG - chr2.4:8164860-8164879 MS.gene31305:CDS 50.0%
! TTGGCAGGTACTCGGTTTGA+AGG - chr2.4:8164849-8164868 MS.gene31305:CDS 50.0%
AATTGGGGAGGCTCCCAGTT+CGG - chr2.4:8164680-8164699 MS.gene31305:CDS 55.0%
ACCTCCACTTGTGGCAGTTG+TGG - chr2.4:8164582-8164601 MS.gene31305:CDS 55.0%
CCATCCCTGACACCGGATTT+AGG + chr2.4:8164820-8164839 None:intergenic 55.0%
CTACGCGGTGTGTGCATGTT+TGG + chr2.4:8164403-8164422 None:intergenic 55.0%
GAGTTCACAACCCACAGCCA+AGG + chr2.4:8164161-8164180 None:intergenic 55.0%
GGACAAAGAGTCCTTGGCTG+TGG - chr2.4:8164147-8164166 MS.gene31305:CDS 55.0%
GGCCTTGCTTTCAAGGCTTG+TGG - chr2.4:8164724-8164743 MS.gene31305:CDS 55.0%
GGTGTCCTAAATCCGGTGTC+AGG - chr2.4:8164812-8164831 MS.gene31305:CDS 55.0%
GTGGCGTTTGACCCTACCAT+AGG - chr2.4:8164073-8164092 MS.gene31305:CDS 55.0%
TCAAACGCCACCCATCCTCT+TGG + chr2.4:8164064-8164083 None:intergenic 55.0%
TCCACAACTGCCACAAGTGG+AGG + chr2.4:8164586-8164605 None:intergenic 55.0%
TGCTCAAGCACCTCCACTTG+TGG - chr2.4:8164573-8164592 MS.gene31305:CDS 55.0%
! CAGCGAGGTTGGTTCATCTC+TGG + chr2.4:8164259-8164278 None:intergenic 55.0%
! CCTAAATCCGGTGTCAGGGA+TGG - chr2.4:8164817-8164836 MS.gene31305:CDS 55.0%
! CGGTTTGAAGGAGCATGTCG+GGG - chr2.4:8164861-8164880 MS.gene31305:CDS 55.0%
! GGCTGTGGGTTGTGAACTCT+TGG - chr2.4:8164162-8164181 MS.gene31305:CDS 55.0%
ATTGGGGAGGCTCCCAGTTC+GGG - chr2.4:8164681-8164700 MS.gene31305:CDS 60.0%
CCAAGGACTCTTTGTCCGCG+TGG + chr2.4:8164144-8164163 None:intergenic 60.0%
CCACGCGGACAAAGAGTCCT+TGG - chr2.4:8164141-8164160 MS.gene31305:CDS 60.0%
GGTGGACAAAGGGGTCCAGA+AGG - chr2.4:8164766-8164785 MS.gene31305:CDS 60.0%
TGGCTGGGGCCTTGCTTTCA+AGG - chr2.4:8164717-8164736 MS.gene31305:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 8163824 8164918 8163824 ID=MS.gene31305
chr2.4 mRNA 8163824 8164918 8163824 ID=MS.gene31305.t1;Parent=MS.gene31305
chr2.4 exon 8163824 8164918 8163824 ID=MS.gene31305.t1.exon1;Parent=MS.gene31305.t1
chr2.4 CDS 8163824 8164918 8163824 ID=cds.MS.gene31305.t1;Parent=MS.gene31305.t1
Gene Sequence

>MS.gene31305

ATGGATCAGAGGGAAGGAGTGAATGATGGTTTTCCTAGACATAGACCAAATGATTCGCTTCTCCCTGGTCTGATCGATGATGTTGCCCTCAATTGTCTCGCTTGGGTTGGTAGATCCGATCACGCGTCACTGTCTTGTATTAATAAAAGGTATAGTAGGTTGATCAGTAGTGGTTATTTATATGGGTTGCGGAAAGAATTGGGAGTTGTGGAACATTTGGTTTATTTGGTTTGTGATCCAAGAGGATGGGTGGCGTTTGACCCTACCATAGGTAGATGGATGGCGTTGCCTAAGATACCGTGCGATGAGTGTTTTAACCACGCGGACAAAGAGTCCTTGGCTGTGGGTTGTGAACTCTTGGTTTTTGGTAGGGAATTGATGGAGTTCGCCATTTGGAAGTATAGCTTGATTTGCCGTCGTTGGTTGAAGTGTCCAGAGATGAACCAACCTCGCTGTTTGTTTGGATCTAGTAGTCTTGGTTCAATTGCTATTGTAGCCGGTGGAAGTGATAAATATGGAAATGTTCTGAAGTCTGCTGAGTTGTATGACTCTGCATCATGTACATGGGAACTTTTACCAAACATGCACACACCGCGTAGATTGTGCTCTAGTTTTTTTATGGACGGTAAATTCTATGTTATCGGTGGAATGTCGAGCACAACTGTTTCATTAACTTGTGGAGAAGAATATGATCTTTCAACAAGAAGTTGGAGGAAAATAGAGGGTATGTATCCATATGTTAATGTGGGTGCTCAAGCACCTCCACTTGTGGCAGTTGTGGATAATCAGTTGTATGCAGTTGAGCACTTAACTAACATGGTGAAGATGTATAACAAGCAAAAGAACACTTGGAATGAATTGGGGAGGCTCCCAGTTCGGGCTGATTCTTCAAATGGCTGGGGCCTTGCTTTCAAGGCTTGTGGAGATAAACTTTTAGTTGTGGGTGGACAAAGGGGTCCAGAAGGTGAAGCTATCGTGCTGAATTCATGGTGTCCTAAATCCGGTGTCAGGGATGGCATCATTGATTGGCAGGTACTCGGTTTGAAGGAGCATGTCGGGGTGTTCGTGTATAATTGTGCTGTTATGAGCTGTTGA

Protein sequence

>MS.gene31305.t1

MDQREGVNDGFPRHRPNDSLLPGLIDDVALNCLAWVGRSDHASLSCINKRYSRLISSGYLYGLRKELGVVEHLVYLVCDPRGWVAFDPTIGRWMALPKIPCDECFNHADKESLAVGCELLVFGRELMEFAIWKYSLICRRWLKCPEMNQPRCLFGSSSLGSIAIVAGGSDKYGNVLKSAELYDSASCTWELLPNMHTPRRLCSSFFMDGKFYVIGGMSSTTVSLTCGEEYDLSTRSWRKIEGMYPYVNVGAQAPPLVAVVDNQLYAVEHLTNMVKMYNKQKNTWNELGRLPVRADSSNGWGLAFKACGDKLLVVGGQRGPEGEAIVLNSWCPKSGVRDGIIDWQVLGLKEHVGVFVYNCAVMSC