Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31305.t1 | XP_013465289.1 | 98.9 | 364 | 4 | 0 | 1 | 364 | 1 | 364 | 7.20E-178 | 633.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31305.t1 | Q9FKJ0 | 75.3 | 348 | 86 | 0 | 17 | 364 | 46 | 393 | 2.4e-121 | 436.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31305.t1 | A0A072VBD7 | 98.9 | 364 | 4 | 0 | 1 | 364 | 1 | 364 | 5.2e-178 | 633.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene31305 | 0.829627 | 4.63E-55 | -1.69E-46 |
MS.gene049801 | MS.gene31305 | 0.818602 | 1.80E-52 | -1.69E-46 |
MS.gene049983 | MS.gene31305 | 0.807786 | 4.26E-50 | -1.69E-46 |
MS.gene050084 | MS.gene31305 | 0.835216 | 1.91E-56 | -1.69E-46 |
MS.gene050085 | MS.gene31305 | 0.834743 | 2.51E-56 | -1.69E-46 |
MS.gene050654 | MS.gene31305 | 0.849217 | 3.73E-60 | -1.69E-46 |
MS.gene050737 | MS.gene31305 | 0.809532 | 1.81E-50 | -1.69E-46 |
MS.gene050941 | MS.gene31305 | 0.804923 | 1.71E-49 | -1.69E-46 |
MS.gene051066 | MS.gene31305 | 0.802181 | 6.34E-49 | -1.69E-46 |
MS.gene051198 | MS.gene31305 | 0.814254 | 1.69E-51 | -1.69E-46 |
MS.gene051209 | MS.gene31305 | 0.806143 | 9.49E-50 | -1.69E-46 |
MS.gene051275 | MS.gene31305 | 0.808111 | 3.64E-50 | -1.69E-46 |
MS.gene051597 | MS.gene31305 | 0.817665 | 2.93E-52 | -1.69E-46 |
MS.gene052034 | MS.gene31305 | 0.816278 | 6.01E-52 | -1.69E-46 |
MS.gene05216 | MS.gene31305 | 0.800593 | 1.34E-48 | -1.69E-46 |
MS.gene052674 | MS.gene31305 | 0.813888 | 2.04E-51 | -1.69E-46 |
MS.gene052675 | MS.gene31305 | 0.818923 | 1.52E-52 | -1.69E-46 |
MS.gene052677 | MS.gene31305 | 0.821468 | 3.97E-53 | -1.69E-46 |
MS.gene053931 | MS.gene31305 | 0.805471 | 1.31E-49 | -1.69E-46 |
MS.gene056480 | MS.gene31305 | 0.835821 | 1.34E-56 | -1.69E-46 |
MS.gene056831 | MS.gene31305 | 0.80653 | 7.87E-50 | -1.69E-46 |
MS.gene056834 | MS.gene31305 | 0.809225 | 2.10E-50 | -1.69E-46 |
MS.gene056973 | MS.gene31305 | 0.816648 | 4.96E-52 | -1.69E-46 |
MS.gene057208 | MS.gene31305 | 0.825364 | 4.88E-54 | -1.69E-46 |
MS.gene057371 | MS.gene31305 | 0.808411 | 3.14E-50 | -1.69E-46 |
MS.gene058010 | MS.gene31305 | 0.804285 | 2.32E-49 | -1.69E-46 |
MS.gene058292 | MS.gene31305 | 0.801603 | 8.33E-49 | -1.69E-46 |
MS.gene058781 | MS.gene31305 | 0.806687 | 7.29E-50 | -1.69E-46 |
MS.gene059007 | MS.gene31305 | 0.807636 | 4.59E-50 | -1.69E-46 |
MS.gene060244 | MS.gene31305 | 0.801327 | 9.49E-49 | -1.69E-46 |
MS.gene060296 | MS.gene31305 | 0.810258 | 1.26E-50 | -1.69E-46 |
MS.gene060527 | MS.gene31305 | 0.805245 | 1.47E-49 | -1.69E-46 |
MS.gene06121 | MS.gene31305 | 0.802148 | 6.44E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31305.t1 | MTR_2g094093 | 98.901 | 364 | 4 | 0 | 1 | 364 | 1 | 364 | 0.0 | 744 |
MS.gene31305.t1 | MTR_4g108280 | 50.276 | 362 | 164 | 5 | 14 | 364 | 24 | 380 | 3.14e-123 | 360 |
MS.gene31305.t1 | MTR_8g468030 | 50.142 | 351 | 162 | 4 | 22 | 364 | 152 | 497 | 1.73e-113 | 339 |
MS.gene31305.t1 | MTR_5g039390 | 49.718 | 354 | 165 | 4 | 19 | 364 | 128 | 476 | 2.89e-113 | 338 |
MS.gene31305.t1 | MTR_0345s0010 | 49.422 | 346 | 161 | 5 | 27 | 364 | 96 | 435 | 5.36e-112 | 333 |
MS.gene31305.t1 | MTR_0105s0170 | 49.422 | 346 | 161 | 5 | 27 | 364 | 109 | 448 | 7.06e-112 | 333 |
MS.gene31305.t1 | MTR_0105s0020 | 48.844 | 346 | 163 | 5 | 27 | 364 | 96 | 435 | 1.70e-111 | 332 |
MS.gene31305.t1 | MTR_0105s0130 | 49.422 | 346 | 161 | 5 | 27 | 364 | 96 | 435 | 3.36e-111 | 332 |
MS.gene31305.t1 | MTR_0105s0040 | 49.133 | 346 | 162 | 5 | 27 | 364 | 194 | 533 | 2.47e-110 | 332 |
MS.gene31305.t1 | MTR_4g022400 | 48.295 | 352 | 170 | 4 | 20 | 364 | 68 | 414 | 8.85e-110 | 327 |
MS.gene31305.t1 | MTR_0496s0010 | 47.977 | 346 | 160 | 6 | 27 | 364 | 78 | 411 | 2.78e-109 | 326 |
MS.gene31305.t1 | MTR_1330s0010 | 50.789 | 317 | 147 | 3 | 27 | 335 | 109 | 424 | 2.99e-108 | 324 |
MS.gene31305.t1 | MTR_4g022260 | 47.246 | 345 | 170 | 4 | 27 | 364 | 78 | 417 | 3.78e-108 | 323 |
MS.gene31305.t1 | MTR_7g029290 | 39.130 | 345 | 202 | 6 | 24 | 362 | 59 | 401 | 4.94e-76 | 240 |
MS.gene31305.t1 | MTR_6g023805 | 35.775 | 355 | 207 | 6 | 21 | 362 | 57 | 403 | 2.38e-70 | 226 |
MS.gene31305.t1 | MTR_4g114110 | 30.420 | 286 | 177 | 9 | 13 | 286 | 74 | 349 | 2.70e-28 | 115 |
MS.gene31305.t1 | MTR_8g085600 | 30.241 | 291 | 183 | 11 | 8 | 287 | 65 | 346 | 2.16e-26 | 109 |
MS.gene31305.t1 | MTR_3g085570 | 25.610 | 328 | 211 | 9 | 15 | 325 | 30 | 341 | 1.54e-21 | 95.1 |
MS.gene31305.t1 | MTR_8g080370 | 26.646 | 319 | 206 | 9 | 17 | 320 | 47 | 352 | 3.47e-21 | 94.4 |
MS.gene31305.t1 | MTR_2g019230 | 26.688 | 311 | 205 | 8 | 20 | 315 | 52 | 354 | 3.75e-19 | 88.6 |
MS.gene31305.t1 | MTR_7g095220 | 27.245 | 323 | 188 | 13 | 20 | 321 | 4 | 300 | 3.43e-18 | 85.1 |
MS.gene31305.t1 | MTR_2g008440 | 23.913 | 368 | 199 | 12 | 14 | 303 | 37 | 401 | 5.39e-18 | 85.5 |
MS.gene31305.t1 | MTR_4g011900 | 24.332 | 337 | 205 | 10 | 17 | 319 | 2 | 322 | 1.87e-17 | 83.2 |
MS.gene31305.t1 | MTR_0105s0060 | 43.956 | 91 | 46 | 2 | 274 | 364 | 20 | 105 | 7.93e-16 | 73.2 |
MS.gene31305.t1 | MTR_3g073640 | 26.336 | 262 | 164 | 8 | 2 | 243 | 14 | 266 | 8.78e-16 | 79.0 |
MS.gene31305.t1 | MTR_3g094850 | 25.788 | 349 | 193 | 13 | 17 | 336 | 6 | 317 | 1.93e-14 | 73.9 |
MS.gene31305.t1 | MTR_8g085650 | 23.735 | 257 | 157 | 5 | 20 | 244 | 7 | 256 | 3.70e-14 | 73.2 |
MS.gene31305.t1 | MTR_1g043110 | 60.784 | 51 | 19 | 1 | 302 | 351 | 7 | 57 | 7.88e-12 | 63.2 |
MS.gene31305.t1 | MTR_8g030940 | 22.939 | 279 | 197 | 8 | 17 | 284 | 22 | 293 | 2.35e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31305.t1 | AT5G60570 | 71.468 | 361 | 102 | 1 | 5 | 364 | 33 | 393 | 0.0 | 537 |
MS.gene31305.t1 | AT5G60570 | 71.468 | 361 | 102 | 1 | 5 | 364 | 33 | 393 | 0.0 | 537 |
MS.gene31305.t1 | AT5G60570 | 71.468 | 361 | 102 | 1 | 5 | 364 | 33 | 393 | 0.0 | 537 |
MS.gene31305.t1 | AT1G26930 | 47.861 | 374 | 177 | 5 | 2 | 364 | 55 | 421 | 1.01e-117 | 348 |
MS.gene31305.t1 | AT1G14330 | 47.967 | 369 | 180 | 6 | 2 | 364 | 79 | 441 | 7.32e-113 | 336 |
MS.gene31305.t1 | AT2G02870 | 47.326 | 374 | 183 | 5 | 1 | 364 | 98 | 467 | 2.44e-112 | 335 |
MS.gene31305.t1 | AT2G02870 | 47.326 | 374 | 183 | 5 | 1 | 364 | 98 | 467 | 2.44e-112 | 335 |
MS.gene31305.t1 | AT2G02870 | 47.326 | 374 | 183 | 5 | 1 | 364 | 98 | 467 | 2.44e-112 | 335 |
MS.gene31305.t1 | AT1G74510 | 46.499 | 357 | 171 | 4 | 24 | 364 | 99 | 451 | 1.02e-105 | 318 |
MS.gene31305.t1 | AT1G74510 | 46.499 | 357 | 171 | 4 | 24 | 364 | 99 | 451 | 1.02e-105 | 318 |
MS.gene31305.t1 | AT1G74510 | 46.499 | 357 | 171 | 4 | 24 | 364 | 99 | 451 | 1.02e-105 | 318 |
MS.gene31305.t1 | AT1G26930 | 39.305 | 374 | 157 | 7 | 2 | 364 | 55 | 369 | 6.12e-82 | 254 |
MS.gene31305.t1 | AT3G27150 | 39.660 | 353 | 199 | 7 | 21 | 362 | 71 | 420 | 2.53e-80 | 252 |
MS.gene31305.t1 | AT3G27150 | 39.660 | 353 | 199 | 7 | 21 | 362 | 71 | 420 | 2.53e-80 | 252 |
MS.gene31305.t1 | AT5G40680 | 35.475 | 358 | 205 | 7 | 21 | 362 | 66 | 413 | 4.82e-68 | 220 |
MS.gene31305.t1 | AT1G55270 | 29.932 | 294 | 180 | 11 | 8 | 287 | 66 | 347 | 1.15e-25 | 107 |
MS.gene31305.t1 | AT3G63220 | 26.524 | 328 | 198 | 11 | 13 | 321 | 4 | 307 | 2.41e-25 | 105 |
MS.gene31305.t1 | AT3G63220 | 26.524 | 328 | 198 | 11 | 13 | 321 | 4 | 307 | 2.41e-25 | 105 |
MS.gene31305.t1 | AT3G63220 | 26.791 | 321 | 192 | 11 | 20 | 321 | 4 | 300 | 4.92e-25 | 104 |
MS.gene31305.t1 | AT1G16250 | 23.529 | 323 | 223 | 7 | 17 | 317 | 5 | 325 | 3.49e-23 | 99.8 |
MS.gene31305.t1 | AT1G16250 | 23.529 | 323 | 223 | 7 | 17 | 317 | 5 | 325 | 3.49e-23 | 99.8 |
MS.gene31305.t1 | AT1G67480 | 25.478 | 314 | 211 | 8 | 17 | 318 | 36 | 338 | 7.66e-22 | 95.9 |
MS.gene31305.t1 | AT1G67480 | 25.478 | 314 | 211 | 8 | 17 | 318 | 36 | 338 | 7.66e-22 | 95.9 |
MS.gene31305.t1 | AT1G67480 | 25.478 | 314 | 211 | 8 | 17 | 318 | 36 | 338 | 7.66e-22 | 95.9 |
MS.gene31305.t1 | AT1G15670 | 27.746 | 346 | 198 | 15 | 20 | 330 | 3 | 331 | 1.34e-16 | 80.5 |
MS.gene31305.t1 | AT3G61350 | 24.779 | 339 | 217 | 13 | 19 | 334 | 20 | 343 | 3.95e-16 | 79.3 |
MS.gene31305.t1 | AT3G61350 | 24.779 | 339 | 217 | 13 | 19 | 334 | 20 | 343 | 3.95e-16 | 79.3 |
MS.gene31305.t1 | AT1G80440 | 24.771 | 327 | 199 | 11 | 20 | 316 | 3 | 312 | 2.64e-15 | 76.6 |
MS.gene31305.t1 | AT1G22040 | 24.513 | 359 | 192 | 15 | 20 | 303 | 43 | 397 | 4.16e-15 | 76.6 |
MS.gene31305.t1 | AT5G02980 | 27.928 | 222 | 113 | 7 | 16 | 237 | 9 | 183 | 2.65e-14 | 73.6 |
MS.gene31305.t1 | AT1G30090 | 24.912 | 285 | 195 | 7 | 18 | 288 | 51 | 330 | 5.73e-14 | 73.2 |
MS.gene31305.t1 | AT3G59940 | 26.936 | 297 | 162 | 10 | 20 | 261 | 15 | 311 | 1.87e-13 | 71.6 |
MS.gene31305.t1 | AT2G21950 | 23.200 | 375 | 248 | 13 | 9 | 359 | 9 | 367 | 5.09e-13 | 70.1 |
MS.gene31305.t1 | AT5G03000 | 28.448 | 232 | 141 | 8 | 19 | 231 | 38 | 263 | 5.43e-12 | 66.6 |
MS.gene31305.t1 | AT1G27420 | 21.646 | 328 | 201 | 11 | 20 | 313 | 10 | 315 | 2.38e-11 | 64.7 |
MS.gene31305.t1 | AT4G19870 | 27.570 | 214 | 127 | 5 | 26 | 238 | 35 | 221 | 6.42e-11 | 63.9 |
MS.gene31305.t1 | AT4G19870 | 27.570 | 214 | 127 | 5 | 26 | 238 | 35 | 221 | 6.42e-11 | 63.9 |
MS.gene31305.t1 | AT1G19460 | 22.840 | 324 | 205 | 9 | 17 | 317 | 51 | 352 | 8.41e-11 | 63.5 |
Find 111 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAGTAGTGGTTATTTATA+TGG | 0.196933 | 2.4:-8164734 | MS.gene31305:CDS |
TGTGGAACATTTGGTTTATT+TGG | 0.199868 | 2.4:-8164690 | MS.gene31305:CDS |
CACTGTCTTGTATTAATAAA+AGG | 0.245075 | 2.4:-8164769 | MS.gene31305:CDS |
CCATCCCTGACACCGGATTT+AGG | 0.245877 | 2.4:+8163903 | None:intergenic |
TGGCTGGGGCCTTGCTTTCA+AGG | 0.285708 | 2.4:-8164003 | MS.gene31305:CDS |
AACCAACCTCGCTGTTTGTT+TGG | 0.309371 | 2.4:-8164455 | MS.gene31305:CDS |
AAAGAACACTTGGAATGAAT+TGG | 0.319362 | 2.4:-8164057 | MS.gene31305:CDS |
GGGCTGATTCTTCAAATGGC+TGG | 0.323493 | 2.4:-8164019 | MS.gene31305:CDS |
GGCTGATTCTTCAAATGGCT+GGG | 0.327405 | 2.4:-8164018 | MS.gene31305:CDS |
GGCTGTGGGTTGTGAACTCT+TGG | 0.337719 | 2.4:-8164558 | MS.gene31305:CDS |
AGCACGATAGCTTCACCTTC+TGG | 0.354930 | 2.4:+8163939 | None:intergenic |
GCCGGTGGAAGTGATAAATA+TGG | 0.355398 | 2.4:-8164401 | MS.gene31305:CDS |
ATTGGGGAGGCTCCCAGTTC+GGG | 0.361540 | 2.4:-8164039 | MS.gene31305:CDS |
ATTGGGAGTTGTGGAACATT+TGG | 0.362570 | 2.4:-8164699 | MS.gene31305:CDS |
TATGGGTTGCGGAAAGAATT+GGG | 0.363669 | 2.4:-8164716 | MS.gene31305:CDS |
TCAGTAGTGGTTATTTATAT+GGG | 0.364286 | 2.4:-8164733 | MS.gene31305:CDS |
CACTCATCGCACGGTATCTT+AGG | 0.371909 | 2.4:+8164608 | None:intergenic |
ATATGGGTTGCGGAAAGAAT+TGG | 0.372232 | 2.4:-8164717 | MS.gene31305:CDS |
TTGCCCTCAATTGTCTCGCT+TGG | 0.372370 | 2.4:-8164814 | MS.gene31305:CDS |
AAGAACACTTGGAATGAATT+GGG | 0.376731 | 2.4:-8164056 | MS.gene31305:CDS |
GACGGTAAATTCTATGTTAT+CGG | 0.385842 | 2.4:-8164275 | MS.gene31305:CDS |
TCGGTTTGAAGGAGCATGTC+GGG | 0.388214 | 2.4:-8163860 | MS.gene31305:CDS |
GGTGTCCTAAATCCGGTGTC+AGG | 0.395086 | 2.4:-8163908 | MS.gene31305:CDS |
AAGAAGTTGGAGGAAAATAG+AGG | 0.402405 | 2.4:-8164195 | MS.gene31305:CDS |
TGCCCTCAATTGTCTCGCTT+GGG | 0.408983 | 2.4:-8164813 | MS.gene31305:CDS |
TTTGAAGAATCAGCCCGAAC+TGG | 0.411166 | 2.4:+8164026 | None:intergenic |
GTATTAATAAAAGGTATAGT+AGG | 0.411880 | 2.4:-8164760 | MS.gene31305:CDS |
CTACGCGGTGTGTGCATGTT+TGG | 0.416639 | 2.4:+8164320 | None:intergenic |
GTTCGGGCTGATTCTTCAAA+TGG | 0.420110 | 2.4:-8164023 | MS.gene31305:CDS |
AATTGGGGAGGCTCCCAGTT+CGG | 0.420940 | 2.4:-8164040 | MS.gene31305:CDS |
GGCCTTGCTTTCAAGGCTTG+TGG | 0.422359 | 2.4:-8163996 | MS.gene31305:CDS |
TTGTTTGGATCTAGTAGTCT+TGG | 0.429145 | 2.4:-8164440 | MS.gene31305:CDS |
AATTGATGGAGTTCGCCATT+TGG | 0.441296 | 2.4:-8164523 | MS.gene31305:CDS |
ATGATCTTTCAACAAGAAGT+TGG | 0.446580 | 2.4:-8164208 | MS.gene31305:CDS |
TTTAGTTGTGGGTGGACAAA+GGG | 0.453737 | 2.4:-8163964 | MS.gene31305:CDS |
CAGCGAGGTTGGTTCATCTC+TGG | 0.457367 | 2.4:+8164464 | None:intergenic |
AAGCTATCGTGCTGAATTCA+TGG | 0.466217 | 2.4:-8163929 | MS.gene31305:CDS |
TTGGCAGGTACTCGGTTTGA+AGG | 0.470109 | 2.4:-8163871 | MS.gene31305:CDS |
TCAGGGATGGCATCATTGAT+TGG | 0.476602 | 2.4:-8163890 | MS.gene31305:CDS |
TGCTCAAGCACCTCCACTTG+TGG | 0.477930 | 2.4:-8164147 | MS.gene31305:CDS |
CTCAATTGTCTCGCTTGGGT+TGG | 0.478795 | 2.4:-8164809 | MS.gene31305:CDS |
TCCATATTTATCACTTCCAC+CGG | 0.480339 | 2.4:+8164400 | None:intergenic |
GGTTCAATTGCTATTGTAGC+CGG | 0.481224 | 2.4:-8164419 | MS.gene31305:CDS |
CCAGGGAGAAGCGAATCATT+TGG | 0.482859 | 2.4:+8164851 | None:intergenic |
ATCATTGATTGGCAGGTACT+CGG | 0.486116 | 2.4:-8163879 | MS.gene31305:CDS |
TCAAACGCCACCCATCCTCT+TGG | 0.488532 | 2.4:+8164659 | None:intergenic |
GGATGGCATCATTGATTGGC+AGG | 0.490041 | 2.4:-8163886 | MS.gene31305:CDS |
GGACAAAGAGTCCTTGGCTG+TGG | 0.495417 | 2.4:-8164573 | MS.gene31305:CDS |
TGAGCACCCACATTAACATA+TGG | 0.504068 | 2.4:+8164164 | None:intergenic |
TTGACCCTACCATAGGTAGA+TGG | 0.507495 | 2.4:-8164640 | MS.gene31305:CDS |
CAACCCAAGCGAGACAATTG+AGG | 0.507498 | 2.4:+8164810 | None:intergenic |
ACAAGACAGTGACGCGTGAT+CGG | 0.508795 | 2.4:+8164781 | None:intergenic |
CCACGCGGACAAAGAGTCCT+TGG | 0.511167 | 2.4:-8164579 | MS.gene31305:CDS |
AATTCATGGTGTCCTAAATC+CGG | 0.511637 | 2.4:-8163915 | MS.gene31305:CDS |
CTCCACAAGCCTTGAAAGCA+AGG | 0.517282 | 2.4:+8163994 | None:intergenic |
CAGAGGGAAGGAGTGAATGA+TGG | 0.519298 | 2.4:-8164890 | MS.gene31305:CDS |
GAATCATTTGGTCTATGTCT+AGG | 0.523572 | 2.4:+8164863 | None:intergenic |
ACCTCCACTTGTGGCAGTTG+TGG | 0.526349 | 2.4:-8164138 | MS.gene31305:CDS |
GTGGTTATTTATATGGGTTG+CGG | 0.529229 | 2.4:-8164727 | MS.gene31305:CDS |
CTTAAAATGGATCAGAGGGA+AGG | 0.531777 | 2.4:-8164902 | None:intergenic |
CAACGCCATCCATCTACCTA+TGG | 0.534689 | 2.4:+8164631 | None:intergenic |
ATGACTCTGCATCATGTACA+TGG | 0.536787 | 2.4:-8164352 | MS.gene31305:CDS |
AATCAAGCTATACTTCCAAA+TGG | 0.541475 | 2.4:+8164508 | None:intergenic |
AACCCAAGCGAGACAATTGA+GGG | 0.543072 | 2.4:+8164811 | None:intergenic |
CTCGGTTTGAAGGAGCATGT+CGG | 0.543892 | 2.4:-8163861 | MS.gene31305:CDS |
TTGAAGAATCAGCCCGAACT+GGG | 0.544400 | 2.4:+8164027 | None:intergenic |
ATAGCTTGATTTGCCGTCGT+TGG | 0.547592 | 2.4:-8164496 | MS.gene31305:CDS |
GCAACATCATCGATCAGACC+AGG | 0.551069 | 2.4:+8164833 | None:intergenic |
ATCCAAACAAACAGCGAGGT+TGG | 0.552845 | 2.4:+8164453 | None:intergenic |
ATCTTTCAACAAGAAGTTGG+AGG | 0.559527 | 2.4:-8164205 | MS.gene31305:CDS |
ACAACTGTTTCATTAACTTG+TGG | 0.560696 | 2.4:-8164239 | MS.gene31305:CDS |
CCTAAATCCGGTGTCAGGGA+TGG | 0.560965 | 2.4:-8163903 | MS.gene31305:CDS |
CCAAATGATTCGCTTCTCCC+TGG | 0.562574 | 2.4:-8164851 | MS.gene31305:CDS |
TATAGTAGGTTGATCAGTAG+TGG | 0.567034 | 2.4:-8164746 | MS.gene31305:CDS |
GCTGATTCTTCAAATGGCTG+GGG | 0.569460 | 2.4:-8164017 | MS.gene31305:CDS |
TGGTTTGTGATCCAAGAGGA+TGG | 0.572503 | 2.4:-8164670 | MS.gene31305:CDS |
AGAAGTTGGAGGAAAATAGA+GGG | 0.574262 | 2.4:-8164194 | MS.gene31305:CDS |
GGTGGACAAAGGGGTCCAGA+AGG | 0.576618 | 2.4:-8163954 | MS.gene31305:CDS |
GACAAAGAGTCCTTGGCTGT+GGG | 0.576875 | 2.4:-8164572 | MS.gene31305:CDS |
GCGGAAAGAATTGGGAGTTG+TGG | 0.576918 | 2.4:-8164708 | MS.gene31305:CDS |
GTGCTGTTATGAGCTGTTGA+GGG | 0.579091 | 2.4:-8163821 | None:intergenic |
TATGTATCCATATGTTAATG+TGG | 0.581465 | 2.4:-8164171 | MS.gene31305:CDS |
TCAATTGCTATTGTAGCCGG+TGG | 0.583147 | 2.4:-8164416 | MS.gene31305:CDS |
GTGTCCTAAATCCGGTGTCA+GGG | 0.587917 | 2.4:-8163907 | MS.gene31305:CDS |
GGTAAATTCTATGTTATCGG+TGG | 0.593344 | 2.4:-8164272 | MS.gene31305:CDS |
ATAACAAGCAAAAGAACACT+TGG | 0.593822 | 2.4:-8164067 | MS.gene31305:CDS |
TCCACAACTGCCACAAGTGG+AGG | 0.600198 | 2.4:+8164137 | None:intergenic |
AATGATGCCATCCCTGACAC+CGG | 0.601414 | 2.4:+8163896 | None:intergenic |
GGTTTGTGATCCAAGAGGAT+GGG | 0.603205 | 2.4:-8164669 | MS.gene31305:CDS |
CCATCCATCTACCTATGGTA+GGG | 0.606052 | 2.4:+8164636 | None:intergenic |
TGTGCTGTTATGAGCTGTTG+AGG | 0.607927 | 2.4:-8163822 | None:intergenic |
CCCTACCATAGGTAGATGGA+TGG | 0.610147 | 2.4:-8164636 | MS.gene31305:CDS |
GCCATCCATCTACCTATGGT+AGG | 0.612392 | 2.4:+8164635 | None:intergenic |
GAGTTCACAACCCACAGCCA+AGG | 0.616056 | 2.4:+8164562 | None:intergenic |
TTATCCACAACTGCCACAAG+TGG | 0.623897 | 2.4:+8164134 | None:intergenic |
AGAACACTTGGAATGAATTG+GGG | 0.627130 | 2.4:-8164055 | MS.gene31305:CDS |
GTGGCGTTTGACCCTACCAT+AGG | 0.627159 | 2.4:-8164647 | MS.gene31305:CDS |
ATGTATCCATATGTTAATGT+GGG | 0.634893 | 2.4:-8164170 | MS.gene31305:CDS |
CGGTTTGAAGGAGCATGTCG+GGG | 0.636704 | 2.4:-8163859 | MS.gene31305:CDS |
CCAAGGACTCTTTGTCCGCG+TGG | 0.654382 | 2.4:+8164579 | None:intergenic |
TGGTTAAAACACTCATCGCA+CGG | 0.658387 | 2.4:+8164599 | None:intergenic |
AGTTGAGCACTTAACTAACA+TGG | 0.659156 | 2.4:-8164099 | MS.gene31305:CDS |
ACACTTGGAATGAATTGGGG+AGG | 0.662795 | 2.4:-8164052 | MS.gene31305:CDS |
TTGTGATCCAAGAGGATGGG+TGG | 0.673255 | 2.4:-8164666 | MS.gene31305:CDS |
CAACATCATCGATCAGACCA+GGG | 0.673678 | 2.4:+8164834 | None:intergenic |
CTGGACACTTCAACCAACGA+CGG | 0.676455 | 2.4:+8164483 | None:intergenic |
TTAGTTGTGGGTGGACAAAG+GGG | 0.688721 | 2.4:-8163963 | MS.gene31305:CDS |
TATTTGGTTTGTGATCCAAG+AGG | 0.692041 | 2.4:-8164674 | MS.gene31305:CDS |
TGACTCTGCATCATGTACAT+GGG | 0.735594 | 2.4:-8164351 | MS.gene31305:CDS |
AAACTAGAGCACAATCTACG+CGG | 0.755040 | 2.4:+8164305 | None:intergenic |
CTAGATCCAAACAAACAGCG+AGG | 0.779810 | 2.4:+8164449 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTATTAATAAAAGGTATAGT+AGG | - | chr2.4:8163960-8163979 | MS.gene31305:CDS | 20.0% |
! | ATCAGTAGTGGTTATTTATA+TGG | - | chr2.4:8163986-8164005 | MS.gene31305:CDS | 25.0% |
! | ATGTATCCATATGTTAATGT+GGG | - | chr2.4:8164550-8164569 | MS.gene31305:CDS | 25.0% |
! | CACTGTCTTGTATTAATAAA+AGG | - | chr2.4:8163951-8163970 | MS.gene31305:CDS | 25.0% |
! | TATGTATCCATATGTTAATG+TGG | - | chr2.4:8164549-8164568 | MS.gene31305:CDS | 25.0% |
! | TCAGTAGTGGTTATTTATAT+GGG | - | chr2.4:8163987-8164006 | MS.gene31305:CDS | 25.0% |
!!! | ATTGTGCTCTAGTTTTTTTA+TGG | - | chr2.4:8164423-8164442 | MS.gene31305:CDS | 25.0% |
AAAGAACACTTGGAATGAAT+TGG | - | chr2.4:8164663-8164682 | MS.gene31305:CDS | 30.0% | |
AAGAACACTTGGAATGAATT+GGG | - | chr2.4:8164664-8164683 | MS.gene31305:CDS | 30.0% | |
AATCAAGCTATACTTCCAAA+TGG | + | chr2.4:8164215-8164234 | None:intergenic | 30.0% | |
ATAACAAGCAAAAGAACACT+TGG | - | chr2.4:8164653-8164672 | MS.gene31305:CDS | 30.0% | |
ATGATCTTTCAACAAGAAGT+TGG | - | chr2.4:8164512-8164531 | MS.gene31305:CDS | 30.0% | |
GACGGTAAATTCTATGTTAT+CGG | - | chr2.4:8164445-8164464 | MS.gene31305:CDS | 30.0% | |
! | ACAACTGTTTCATTAACTTG+TGG | - | chr2.4:8164481-8164500 | MS.gene31305:CDS | 30.0% |
! | TGTGGAACATTTGGTTTATT+TGG | - | chr2.4:8164030-8164049 | MS.gene31305:CDS | 30.0% |
!! | GGAGATAAACTTTTAGTTGT+GGG | - | chr2.4:8164745-8164764 | MS.gene31305:CDS | 30.0% |
!! | TGGAGATAAACTTTTAGTTG+TGG | - | chr2.4:8164744-8164763 | MS.gene31305:CDS | 30.0% |
!!! | TGCTCTAGTTTTTTTATGGA+CGG | - | chr2.4:8164427-8164446 | MS.gene31305:CDS | 30.0% |
AAGAAGTTGGAGGAAAATAG+AGG | - | chr2.4:8164525-8164544 | MS.gene31305:CDS | 35.0% | |
AATTCATGGTGTCCTAAATC+CGG | - | chr2.4:8164805-8164824 | MS.gene31305:CDS | 35.0% | |
AGAACACTTGGAATGAATTG+GGG | - | chr2.4:8164665-8164684 | MS.gene31305:CDS | 35.0% | |
AGAAGTTGGAGGAAAATAGA+GGG | - | chr2.4:8164526-8164545 | MS.gene31305:CDS | 35.0% | |
AGTTGAGCACTTAACTAACA+TGG | - | chr2.4:8164621-8164640 | MS.gene31305:CDS | 35.0% | |
ATCTTTCAACAAGAAGTTGG+AGG | - | chr2.4:8164515-8164534 | MS.gene31305:CDS | 35.0% | |
GAATCATTTGGTCTATGTCT+AGG | + | chr2.4:8163860-8163879 | None:intergenic | 35.0% | |
GGTAAATTCTATGTTATCGG+TGG | - | chr2.4:8164448-8164467 | MS.gene31305:CDS | 35.0% | |
TCCATATTTATCACTTCCAC+CGG | + | chr2.4:8164323-8164342 | None:intergenic | 35.0% | |
TTGTTTGGATCTAGTAGTCT+TGG | - | chr2.4:8164280-8164299 | MS.gene31305:CDS | 35.0% | |
! | GTGGTTATTTATATGGGTTG+CGG | - | chr2.4:8163993-8164012 | MS.gene31305:CDS | 35.0% |
!! | GATAAACTTTTAGTTGTGGG+TGG | - | chr2.4:8164748-8164767 | MS.gene31305:CDS | 35.0% |
!! | TATAGTAGGTTGATCAGTAG+TGG | - | chr2.4:8163974-8163993 | MS.gene31305:CDS | 35.0% |
!! | TATTTGGTTTGTGATCCAAG+AGG | - | chr2.4:8164046-8164065 | MS.gene31305:CDS | 35.0% |
!!! | TGAACTCTTGGTTTTTGGTA+GGG | - | chr2.4:8164174-8164193 | MS.gene31305:CDS | 35.0% |
AAACTAGAGCACAATCTACG+CGG | + | chr2.4:8164418-8164437 | None:intergenic | 40.0% | |
AAGCTATCGTGCTGAATTCA+TGG | - | chr2.4:8164791-8164810 | MS.gene31305:CDS | 40.0% | |
AATTGATGGAGTTCGCCATT+TGG | - | chr2.4:8164197-8164216 | MS.gene31305:CDS | 40.0% | |
ATGACTCTGCATCATGTACA+TGG | - | chr2.4:8164368-8164387 | MS.gene31305:CDS | 40.0% | |
ATTGGGAGTTGTGGAACATT+TGG | - | chr2.4:8164021-8164040 | MS.gene31305:CDS | 40.0% | |
TGACTCTGCATCATGTACAT+GGG | - | chr2.4:8164369-8164388 | MS.gene31305:CDS | 40.0% | |
TGAGCACCCACATTAACATA+TGG | + | chr2.4:8164559-8164578 | None:intergenic | 40.0% | |
TGGTTAAAACACTCATCGCA+CGG | + | chr2.4:8164124-8164143 | None:intergenic | 40.0% | |
TTTAGTTGTGGGTGGACAAA+GGG | - | chr2.4:8164756-8164775 | MS.gene31305:CDS | 40.0% | |
! | ATATGGGTTGCGGAAAGAAT+TGG | - | chr2.4:8164003-8164022 | MS.gene31305:CDS | 40.0% |
! | ATCATTGATTGGCAGGTACT+CGG | - | chr2.4:8164841-8164860 | MS.gene31305:CDS | 40.0% |
! | GGTTCAATTGCTATTGTAGC+CGG | - | chr2.4:8164301-8164320 | MS.gene31305:CDS | 40.0% |
! | TATGGGTTGCGGAAAGAATT+GGG | - | chr2.4:8164004-8164023 | MS.gene31305:CDS | 40.0% |
!! | GGTTGTGAACTCTTGGTTTT+TGG | - | chr2.4:8164169-8164188 | MS.gene31305:CDS | 40.0% |
!! | TTTTAGTTGTGGGTGGACAA+AGG | - | chr2.4:8164755-8164774 | MS.gene31305:CDS | 40.0% |
!!! | GGTTTTTGGTAGGGAATTGA+TGG | - | chr2.4:8164183-8164202 | MS.gene31305:CDS | 40.0% |
!!! | GTGAACTCTTGGTTTTTGGT+AGG | - | chr2.4:8164173-8164192 | MS.gene31305:CDS | 40.0% |
AACCAACCTCGCTGTTTGTT+TGG | - | chr2.4:8164265-8164284 | MS.gene31305:CDS | 45.0% | |
AACCCAAGCGAGACAATTGA+GGG | + | chr2.4:8163912-8163931 | None:intergenic | 45.0% | |
ACACTTGGAATGAATTGGGG+AGG | - | chr2.4:8164668-8164687 | MS.gene31305:CDS | 45.0% | |
ATCCAAACAAACAGCGAGGT+TGG | + | chr2.4:8164270-8164289 | None:intergenic | 45.0% | |
CAACATCATCGATCAGACCA+GGG | + | chr2.4:8163889-8163908 | None:intergenic | 45.0% | |
CCATCCATCTACCTATGGTA+GGG | + | chr2.4:8164087-8164106 | None:intergenic | 45.0% | |
CTAGATCCAAACAAACAGCG+AGG | + | chr2.4:8164274-8164293 | None:intergenic | 45.0% | |
GCCGGTGGAAGTGATAAATA+TGG | - | chr2.4:8164319-8164338 | MS.gene31305:CDS | 45.0% | |
GGTTTGTGATCCAAGAGGAT+GGG | - | chr2.4:8164051-8164070 | MS.gene31305:CDS | 45.0% | |
TCAGGGATGGCATCATTGAT+TGG | - | chr2.4:8164830-8164849 | MS.gene31305:CDS | 45.0% | |
TTAGTTGTGGGTGGACAAAG+GGG | - | chr2.4:8164757-8164776 | MS.gene31305:CDS | 45.0% | |
TTATCCACAACTGCCACAAG+TGG | + | chr2.4:8164589-8164608 | None:intergenic | 45.0% | |
TTGAAGAATCAGCCCGAACT+GGG | + | chr2.4:8164696-8164715 | None:intergenic | 45.0% | |
TTGACCCTACCATAGGTAGA+TGG | - | chr2.4:8164080-8164099 | MS.gene31305:CDS | 45.0% | |
TTTGAAGAATCAGCCCGAAC+TGG | + | chr2.4:8164697-8164716 | None:intergenic | 45.0% | |
! | GCTGATTCTTCAAATGGCTG+GGG | - | chr2.4:8164703-8164722 | MS.gene31305:CDS | 45.0% |
! | GGCTGATTCTTCAAATGGCT+GGG | - | chr2.4:8164702-8164721 | MS.gene31305:CDS | 45.0% |
! | GTTCGGGCTGATTCTTCAAA+TGG | - | chr2.4:8164697-8164716 | MS.gene31305:CDS | 45.0% |
! | TCAATTGCTATTGTAGCCGG+TGG | - | chr2.4:8164304-8164323 | MS.gene31305:CDS | 45.0% |
! | TGGTTTGTGATCCAAGAGGA+TGG | - | chr2.4:8164050-8164069 | MS.gene31305:CDS | 45.0% |
!! | ATAGCTTGATTTGCCGTCGT+TGG | - | chr2.4:8164224-8164243 | MS.gene31305:CDS | 45.0% |
!!! | CGATGAGTGTTTTAACCACG+CGG | - | chr2.4:8164126-8164145 | MS.gene31305:CDS | 45.0% |
AATGATGCCATCCCTGACAC+CGG | + | chr2.4:8164827-8164846 | None:intergenic | 50.0% | |
ACAAGACAGTGACGCGTGAT+CGG | + | chr2.4:8163942-8163961 | None:intergenic | 50.0% | |
AGCACGATAGCTTCACCTTC+TGG | + | chr2.4:8164784-8164803 | None:intergenic | 50.0% | |
CAACCCAAGCGAGACAATTG+AGG | + | chr2.4:8163913-8163932 | None:intergenic | 50.0% | |
CAACGCCATCCATCTACCTA+TGG | + | chr2.4:8164092-8164111 | None:intergenic | 50.0% | |
CACTCATCGCACGGTATCTT+AGG | + | chr2.4:8164115-8164134 | None:intergenic | 50.0% | |
CAGAGGGAAGGAGTGAATGA+TGG | - | chr2.4:8163830-8163849 | MS.gene31305:CDS | 50.0% | |
CCAAATGATTCGCTTCTCCC+TGG | - | chr2.4:8163869-8163888 | MS.gene31305:CDS | 50.0% | |
CCAGGGAGAAGCGAATCATT+TGG | + | chr2.4:8163872-8163891 | None:intergenic | 50.0% | |
CCCTACCATAGGTAGATGGA+TGG | - | chr2.4:8164084-8164103 | MS.gene31305:CDS | 50.0% | |
CTCAATTGTCTCGCTTGGGT+TGG | - | chr2.4:8163911-8163930 | MS.gene31305:CDS | 50.0% | |
CTCCACAAGCCTTGAAAGCA+AGG | + | chr2.4:8164729-8164748 | None:intergenic | 50.0% | |
CTGGACACTTCAACCAACGA+CGG | + | chr2.4:8164240-8164259 | None:intergenic | 50.0% | |
GACAAAGAGTCCTTGGCTGT+GGG | - | chr2.4:8164148-8164167 | MS.gene31305:CDS | 50.0% | |
GCAACATCATCGATCAGACC+AGG | + | chr2.4:8163890-8163909 | None:intergenic | 50.0% | |
GCCATCCATCTACCTATGGT+AGG | + | chr2.4:8164088-8164107 | None:intergenic | 50.0% | |
GCGGAAAGAATTGGGAGTTG+TGG | - | chr2.4:8164012-8164031 | MS.gene31305:CDS | 50.0% | |
TGCCCTCAATTGTCTCGCTT+GGG | - | chr2.4:8163907-8163926 | MS.gene31305:CDS | 50.0% | |
TTGCCCTCAATTGTCTCGCT+TGG | - | chr2.4:8163906-8163925 | MS.gene31305:CDS | 50.0% | |
TTGTGATCCAAGAGGATGGG+TGG | - | chr2.4:8164054-8164073 | MS.gene31305:CDS | 50.0% | |
! | CTCGGTTTGAAGGAGCATGT+CGG | - | chr2.4:8164859-8164878 | MS.gene31305:CDS | 50.0% |
! | GGATGGCATCATTGATTGGC+AGG | - | chr2.4:8164834-8164853 | MS.gene31305:CDS | 50.0% |
! | GGGCTGATTCTTCAAATGGC+TGG | - | chr2.4:8164701-8164720 | MS.gene31305:CDS | 50.0% |
! | GTGTCCTAAATCCGGTGTCA+GGG | - | chr2.4:8164813-8164832 | MS.gene31305:CDS | 50.0% |
! | TCGGTTTGAAGGAGCATGTC+GGG | - | chr2.4:8164860-8164879 | MS.gene31305:CDS | 50.0% |
! | TTGGCAGGTACTCGGTTTGA+AGG | - | chr2.4:8164849-8164868 | MS.gene31305:CDS | 50.0% |
AATTGGGGAGGCTCCCAGTT+CGG | - | chr2.4:8164680-8164699 | MS.gene31305:CDS | 55.0% | |
ACCTCCACTTGTGGCAGTTG+TGG | - | chr2.4:8164582-8164601 | MS.gene31305:CDS | 55.0% | |
CCATCCCTGACACCGGATTT+AGG | + | chr2.4:8164820-8164839 | None:intergenic | 55.0% | |
CTACGCGGTGTGTGCATGTT+TGG | + | chr2.4:8164403-8164422 | None:intergenic | 55.0% | |
GAGTTCACAACCCACAGCCA+AGG | + | chr2.4:8164161-8164180 | None:intergenic | 55.0% | |
GGACAAAGAGTCCTTGGCTG+TGG | - | chr2.4:8164147-8164166 | MS.gene31305:CDS | 55.0% | |
GGCCTTGCTTTCAAGGCTTG+TGG | - | chr2.4:8164724-8164743 | MS.gene31305:CDS | 55.0% | |
GGTGTCCTAAATCCGGTGTC+AGG | - | chr2.4:8164812-8164831 | MS.gene31305:CDS | 55.0% | |
GTGGCGTTTGACCCTACCAT+AGG | - | chr2.4:8164073-8164092 | MS.gene31305:CDS | 55.0% | |
TCAAACGCCACCCATCCTCT+TGG | + | chr2.4:8164064-8164083 | None:intergenic | 55.0% | |
TCCACAACTGCCACAAGTGG+AGG | + | chr2.4:8164586-8164605 | None:intergenic | 55.0% | |
TGCTCAAGCACCTCCACTTG+TGG | - | chr2.4:8164573-8164592 | MS.gene31305:CDS | 55.0% | |
! | CAGCGAGGTTGGTTCATCTC+TGG | + | chr2.4:8164259-8164278 | None:intergenic | 55.0% |
! | CCTAAATCCGGTGTCAGGGA+TGG | - | chr2.4:8164817-8164836 | MS.gene31305:CDS | 55.0% |
! | CGGTTTGAAGGAGCATGTCG+GGG | - | chr2.4:8164861-8164880 | MS.gene31305:CDS | 55.0% |
! | GGCTGTGGGTTGTGAACTCT+TGG | - | chr2.4:8164162-8164181 | MS.gene31305:CDS | 55.0% |
ATTGGGGAGGCTCCCAGTTC+GGG | - | chr2.4:8164681-8164700 | MS.gene31305:CDS | 60.0% | |
CCAAGGACTCTTTGTCCGCG+TGG | + | chr2.4:8164144-8164163 | None:intergenic | 60.0% | |
CCACGCGGACAAAGAGTCCT+TGG | - | chr2.4:8164141-8164160 | MS.gene31305:CDS | 60.0% | |
GGTGGACAAAGGGGTCCAGA+AGG | - | chr2.4:8164766-8164785 | MS.gene31305:CDS | 60.0% | |
TGGCTGGGGCCTTGCTTTCA+AGG | - | chr2.4:8164717-8164736 | MS.gene31305:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 8163824 | 8164918 | 8163824 | ID=MS.gene31305 |
chr2.4 | mRNA | 8163824 | 8164918 | 8163824 | ID=MS.gene31305.t1;Parent=MS.gene31305 |
chr2.4 | exon | 8163824 | 8164918 | 8163824 | ID=MS.gene31305.t1.exon1;Parent=MS.gene31305.t1 |
chr2.4 | CDS | 8163824 | 8164918 | 8163824 | ID=cds.MS.gene31305.t1;Parent=MS.gene31305.t1 |
Gene Sequence |
Protein sequence |