Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31960.t1 | XP_013457042.1 | 95.6 | 91 | 4 | 0 | 1 | 91 | 43 | 133 | 7.90E-25 | 122.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31960.t1 | O65426 | 75.3 | 81 | 20 | 0 | 1 | 81 | 61 | 141 | 6.8e-09 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31960.t1 | A0A072UPT8 | 95.6 | 91 | 4 | 0 | 1 | 91 | 43 | 133 | 5.7e-25 | 122.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31960.t1 | TF | C2C2-LSD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049801 | MS.gene31960 | -0.800633 | 1.32E-48 | -1.69E-46 |
| MS.gene04991 | MS.gene31960 | 0.849351 | 3.42E-60 | -1.69E-46 |
| MS.gene050654 | MS.gene31960 | -0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene050737 | MS.gene31960 | -0.838822 | 2.29E-57 | -1.69E-46 |
| MS.gene050941 | MS.gene31960 | -0.824681 | 7.07E-54 | -1.69E-46 |
| MS.gene051122 | MS.gene31960 | -0.821778 | 3.37E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene31960 | -0.828436 | 9.00E-55 | -1.69E-46 |
| MS.gene051655 | MS.gene31960 | -0.809808 | 1.58E-50 | -1.69E-46 |
| MS.gene05216 | MS.gene31960 | -0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene31960 | -0.826083 | 3.30E-54 | -1.69E-46 |
| MS.gene052675 | MS.gene31960 | -0.824437 | 8.08E-54 | -1.69E-46 |
| MS.gene052677 | MS.gene31960 | -0.827257 | 1.73E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene31960 | -0.809524 | 1.81E-50 | -1.69E-46 |
| MS.gene055442 | MS.gene31960 | -0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene31960 | -0.804352 | 2.25E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene31960 | -0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene31960 | -0.859738 | 3.36E-63 | -1.69E-46 |
| MS.gene058223 | MS.gene31960 | 0.839813 | 1.27E-57 | -1.69E-46 |
| MS.gene058429 | MS.gene31960 | -0.837917 | 3.92E-57 | -1.69E-46 |
| MS.gene06010 | MS.gene31960 | -0.802701 | 4.95E-49 | -1.69E-46 |
| MS.gene060520 | MS.gene31960 | -0.805614 | 1.23E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene31960 | -0.811806 | 5.82E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene31960 | -0.800731 | 1.26E-48 | -1.69E-46 |
| MS.gene060850 | MS.gene31960 | -0.832992 | 6.89E-56 | -1.69E-46 |
| MS.gene060851 | MS.gene31960 | -0.851251 | 1.00E-60 | -1.69E-46 |
| MS.gene060852 | MS.gene31960 | -0.850236 | 1.93E-60 | -1.69E-46 |
| MS.gene060932 | MS.gene31960 | -0.819926 | 8.98E-53 | -1.69E-46 |
| MS.gene06121 | MS.gene31960 | -0.856879 | 2.39E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31960.t1 | MTR_4g088850 | 98.901 | 91 | 1 | 0 | 1 | 91 | 43 | 133 | 3.23e-62 | 185 |
| MS.gene31960.t1 | MTR_4g088850 | 98.571 | 70 | 1 | 0 | 1 | 70 | 43 | 112 | 3.19e-45 | 142 |
| MS.gene31960.t1 | MTR_4g098500 | 57.746 | 71 | 30 | 0 | 1 | 71 | 47 | 117 | 7.04e-25 | 90.5 |
| MS.gene31960.t1 | MTR_4g098500 | 57.746 | 71 | 30 | 0 | 1 | 71 | 73 | 143 | 1.97e-24 | 90.1 |
| MS.gene31960.t1 | MTR_2g047838 | 43.529 | 85 | 48 | 0 | 1 | 85 | 47 | 131 | 3.01e-24 | 90.1 |
| MS.gene31960.t1 | MTR_8g089310 | 51.316 | 76 | 37 | 0 | 1 | 76 | 44 | 119 | 5.49e-23 | 87.0 |
| MS.gene31960.t1 | MTR_8g089310 | 51.316 | 76 | 37 | 0 | 1 | 76 | 57 | 132 | 6.99e-23 | 87.0 |
| MS.gene31960.t1 | MTR_8g089310 | 51.316 | 76 | 37 | 0 | 1 | 76 | 91 | 166 | 1.52e-22 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31960.t1 | AT4G21610 | 76.543 | 81 | 19 | 0 | 1 | 81 | 61 | 141 | 5.94e-41 | 132 |
| MS.gene31960.t1 | AT4G21610 | 76.812 | 69 | 16 | 0 | 1 | 69 | 61 | 129 | 2.58e-32 | 110 |
| MS.gene31960.t1 | AT1G32540 | 56.338 | 71 | 31 | 0 | 1 | 71 | 107 | 177 | 3.35e-24 | 90.5 |
| MS.gene31960.t1 | AT1G32540 | 56.338 | 71 | 31 | 0 | 1 | 71 | 74 | 144 | 3.62e-24 | 89.7 |
| MS.gene31960.t1 | AT1G32540 | 56.338 | 71 | 31 | 0 | 1 | 71 | 74 | 144 | 3.62e-24 | 89.7 |
| MS.gene31960.t1 | AT1G32540 | 59.091 | 66 | 27 | 0 | 1 | 66 | 74 | 139 | 1.71e-22 | 85.5 |
| MS.gene31960.t1 | AT4G20380 | 45.349 | 86 | 38 | 1 | 1 | 77 | 46 | 131 | 3.68e-21 | 82.8 |
| MS.gene31960.t1 | AT4G20380 | 45.349 | 86 | 38 | 1 | 1 | 77 | 46 | 131 | 3.68e-21 | 82.8 |
| MS.gene31960.t1 | AT4G20380 | 45.349 | 86 | 38 | 1 | 1 | 77 | 46 | 131 | 3.68e-21 | 82.8 |
| MS.gene31960.t1 | AT4G20380 | 45.349 | 86 | 38 | 1 | 1 | 77 | 46 | 131 | 3.68e-21 | 82.8 |
| MS.gene31960.t1 | AT4G20380 | 45.349 | 86 | 38 | 1 | 1 | 77 | 46 | 131 | 3.68e-21 | 82.8 |
| MS.gene31960.t1 | AT4G20380 | 45.349 | 86 | 38 | 1 | 1 | 77 | 51 | 136 | 3.84e-21 | 82.8 |
| MS.gene31960.t1 | AT4G20380 | 45.349 | 86 | 38 | 1 | 1 | 77 | 51 | 136 | 3.84e-21 | 82.8 |
| MS.gene31960.t1 | AT4G20380 | 46.154 | 78 | 33 | 1 | 1 | 69 | 46 | 123 | 3.59e-19 | 76.3 |
| MS.gene31960.t1 | AT4G20380 | 38.961 | 77 | 44 | 1 | 1 | 74 | 5 | 81 | 3.05e-13 | 60.8 |
| MS.gene31960.t1 | AT4G20380 | 35.714 | 112 | 37 | 1 | 1 | 77 | 46 | 157 | 6.81e-18 | 74.7 |
| MS.gene31960.t1 | AT4G20380 | 43.939 | 66 | 34 | 1 | 1 | 63 | 5 | 70 | 1.04e-12 | 61.2 |
Find 31 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCGGTTTGTGACAGAAAT+CGG | 0.319178 | 4.3:-24292107 | MS.gene31960:CDS |
| AGGGCGCTAACAACCAGATT+TGG | 0.330254 | 4.3:+24291569 | None:intergenic |
| GCATGAACATTTGACATGTT+TGG | 0.343047 | 4.3:+24294358 | None:intergenic |
| TTCCTTCGTCACAGCTGATC+AGG | 0.397948 | 4.3:-24292207 | MS.gene31960:intron |
| AAACCAACTCCTCCCAAATC+TGG | 0.417656 | 4.3:-24291582 | MS.gene31960:CDS |
| GCCGGTTTGTGACAGAAATC+GGG | 0.420532 | 4.3:-24292106 | MS.gene31960:CDS |
| GGGCGCTAACAACCAGATTT+GGG | 0.421983 | 4.3:+24291570 | None:intergenic |
| CTAATACAATGTTGACTGTC+TGG | 0.430906 | 4.3:+24294333 | None:intergenic |
| CATACGGTGCTCCACAAGTT+AGG | 0.437213 | 4.3:-24292139 | MS.gene31960:CDS |
| CAACCAGATTTGGGAGGAGT+TGG | 0.440236 | 4.3:+24291579 | None:intergenic |
| CCCCGATTTCTGTCACAAAC+CGG | 0.464843 | 4.3:+24292105 | None:intergenic |
| ACAGTCAACATTGTATTAGA+AGG | 0.509196 | 4.3:-24294329 | MS.gene31960:intron |
| CATTTGACATGTTTGGCACC+TGG | 0.517148 | 4.3:+24294365 | None:intergenic |
| CGCCTGCTTTCGTATCCACC+AGG | 0.522323 | 4.3:-24294383 | MS.gene31960:CDS |
| AAGTTAGGTGTTCATCATGC+CGG | 0.527912 | 4.3:-24292124 | MS.gene31960:CDS |
| CTAACTTGTGGAGCACCGTA+TGG | 0.535574 | 4.3:+24292140 | None:intergenic |
| CAGACAACAAGCGGCCTCCA+TGG | 0.537061 | 4.3:-24291620 | MS.gene31960:CDS |
| CACCTGGTGGATACGAAAGC+AGG | 0.543193 | 4.3:+24294381 | None:intergenic |
| TTGTGCAGGCAGACAACAAG+CGG | 0.571247 | 4.3:-24291629 | MS.gene31960:intron |
| TAACTTGTGGAGCACCGTAT+GGG | 0.583052 | 4.3:+24292141 | None:intergenic |
| TTACTTTGTTGTACAGACCA+TGG | 0.588700 | 4.3:+24291603 | None:intergenic |
| TTCGTCACAGCTGATCAGGT+TGG | 0.596338 | 4.3:-24292203 | MS.gene31960:intron |
| CAGGTTGGACAAGTTAAGTG+TGG | 0.602861 | 4.3:-24292188 | MS.gene31960:CDS |
| CATGATGAACACCTAACTTG+TGG | 0.604697 | 4.3:+24292128 | None:intergenic |
| AGGTTGGACAAGTTAAGTGT+GGG | 0.628125 | 4.3:-24292187 | MS.gene31960:CDS |
| TTGACATGTTTGGCACCTGG+TGG | 0.642814 | 4.3:+24294368 | None:intergenic |
| GTATTGCTAATGTACCCATA+CGG | 0.650598 | 4.3:-24292155 | MS.gene31960:CDS |
| CCGGTTTGTGACAGAAATCG+GGG | 0.660382 | 4.3:-24292105 | MS.gene31960:intron |
| CGCTAACAACCAGATTTGGG+AGG | 0.672253 | 4.3:+24291573 | None:intergenic |
| CTGGTGGATACGAAAGCAGG+CGG | 0.684251 | 4.3:+24294384 | None:intergenic |
| CTTTGTTGTACAGACCATGG+AGG | 0.723748 | 4.3:+24291606 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAATAATATATATGTAT+AGG | + | chr4.3:24294071-24294090 | None:intergenic | 10.0% |
| !!! | TATTATTGATTTTATATTGT+TGG | - | chr4.3:24294280-24294299 | MS.gene31960:intron | 10.0% |
| !! | AAAATGTCTAATTGAAAATT+TGG | + | chr4.3:24293593-24293612 | None:intergenic | 15.0% |
| !! | ATAAAATCAATAATAGCTAT+AGG | + | chr4.3:24294275-24294294 | None:intergenic | 15.0% |
| !!! | TTTTGACTTAAAAAATTAGA+AGG | + | chr4.3:24293945-24293964 | None:intergenic | 15.0% |
| !! | ACATATTACATATTGTTCTA+AGG | - | chr4.3:24293999-24294018 | MS.gene31960:intron | 20.0% |
| !! | AGTAACATTTCTAACAAAAA+AGG | - | chr4.3:24293484-24293503 | MS.gene31960:intron | 20.0% |
| !! | ATATTCAACATTGTATTAGA+AGG | - | chr4.3:24293259-24293278 | MS.gene31960:intron | 20.0% |
| !! | ATTTCATTGCGATTATAAAT+CGG | + | chr4.3:24292004-24292023 | None:intergenic | 20.0% |
| !! | GAAAATTTCATTAACATAAC+AGG | + | chr4.3:24293193-24293212 | None:intergenic | 20.0% |
| !! | TTCATAAACAATTACATGAT+TGG | - | chr4.3:24293383-24293402 | MS.gene31960:intron | 20.0% |
| !! | TTCATATTTGAAAATTGTGT+CGG | + | chr4.3:24292695-24292714 | None:intergenic | 20.0% |
| !!! | ATAATGACCAAATATTTTCT+TGG | - | chr4.3:24292536-24292555 | MS.gene31960:intron | 20.0% |
| !!! | TTCAATTAGACATTTTAGTA+TGG | - | chr4.3:24293597-24293616 | MS.gene31960:intron | 20.0% |
| ! | AACTTAAAATGCAAGTTTCA+TGG | + | chr4.3:24293331-24293350 | None:intergenic | 25.0% |
| ! | ATCAAAAGTTGAAGATTACA+TGG | - | chr4.3:24292767-24292786 | MS.gene31960:intron | 25.0% |
| ! | CTTTAAATTATCCAAGTGTA+GGG | - | chr4.3:24294170-24294189 | MS.gene31960:intron | 25.0% |
| ! | TACATAAATCAACTTGCAAT+TGG | + | chr4.3:24293980-24293999 | None:intergenic | 25.0% |
| ! | TACTTGTACAAAATATGACA+TGG | - | chr4.3:24293708-24293727 | MS.gene31960:intron | 25.0% |
| ! | TCAAAAGTTGAAGATTACAT+GGG | - | chr4.3:24292768-24292787 | MS.gene31960:intron | 25.0% |
| ! | TCATCAAATTCAAATGTGAT+TGG | + | chr4.3:24293555-24293574 | None:intergenic | 25.0% |
| ! | TTTAAATTATCCAAGTGTAG+GGG | - | chr4.3:24294171-24294190 | MS.gene31960:intron | 25.0% |
| ! | TTTCATTGCGATTATAAATC+GGG | + | chr4.3:24292003-24292022 | None:intergenic | 25.0% |
| !! | ATGAAATTTTCAATGCTCTA+CGG | - | chr4.3:24292017-24292036 | MS.gene31960:intron | 25.0% |
| !!! | AGTCTATTTTTCTCTTTGTA+CGG | - | chr4.3:24294107-24294126 | MS.gene31960:intron | 25.0% |
| !!! | TTTCTAAAAGCTAATTTTCG+AGG | + | chr4.3:24291763-24291782 | None:intergenic | 25.0% |
| AACAACTATTTCAACATCGA+TGG | - | chr4.3:24292388-24292407 | MS.gene31960:intron | 30.0% | |
| AACTTCCTGGTCATTATAAA+AGG | - | chr4.3:24293507-24293526 | MS.gene31960:intron | 30.0% | |
| AAGTTTGACATTTGATGTAG+CGG | - | chr4.3:24294039-24294058 | MS.gene31960:intron | 30.0% | |
| ACAGTCAACATTGTATTAGA+AGG | - | chr4.3:24291650-24291669 | MS.gene31960:intron | 30.0% | |
| ACTTCCTGGTCATTATAAAA+GGG | - | chr4.3:24293508-24293527 | MS.gene31960:intron | 30.0% | |
| AGACATGTTCATGAGAAAAA+AGG | + | chr4.3:24291684-24291703 | None:intergenic | 30.0% | |
| AGCTAACATGTATAAGATCA+TGG | - | chr4.3:24293044-24293063 | MS.gene31960:intron | 30.0% | |
| ATGAGGATATCAGTGTTTAA+AGG | + | chr4.3:24294325-24294344 | None:intergenic | 30.0% | |
| ATTATAAATCGGGGATTGTT+GGG | + | chr4.3:24291993-24292012 | None:intergenic | 30.0% | |
| ATTTGTCCAAAGTACAAACA+AGG | + | chr4.3:24292213-24292232 | None:intergenic | 30.0% | |
| CAGGAAATTTGATTACAATC+AGG | + | chr4.3:24293174-24293193 | None:intergenic | 30.0% | |
| CCTACACTTGGATAATTTAA+AGG | + | chr4.3:24294172-24294191 | None:intergenic | 30.0% | |
| CCTTTAAATTATCCAAGTGT+AGG | - | chr4.3:24294169-24294188 | MS.gene31960:intron | 30.0% | |
| CTCAAGTTTATATCTCACAT+TGG | - | chr4.3:24292140-24292159 | MS.gene31960:CDS | 30.0% | |
| TAGTTGATCTACGAAGATTT+GGG | + | chr4.3:24291931-24291950 | None:intergenic | 30.0% | |
| TATCATCTTGATCTTTGTCT+TGG | + | chr4.3:24292992-24293011 | None:intergenic | 30.0% | |
| TCTTCAGATTGAATGAATAG+AGG | + | chr4.3:24294249-24294268 | None:intergenic | 30.0% | |
| TGAGGATATCAGTGTTTAAA+GGG | + | chr4.3:24294324-24294343 | None:intergenic | 30.0% | |
| TGCAGCTTCAATTTCATTAT+GGG | + | chr4.3:24292806-24292825 | None:intergenic | 30.0% | |
| TTAAATTATCCAAGTGTAGG+GGG | - | chr4.3:24294172-24294191 | MS.gene31960:intron | 30.0% | |
| TTCATTGCGATTATAAATCG+GGG | + | chr4.3:24292002-24292021 | None:intergenic | 30.0% | |
| TTGCAGCTTCAATTTCATTA+TGG | + | chr4.3:24292807-24292826 | None:intergenic | 30.0% | |
| TTTGTCCAAAGTACAAACAA+GGG | + | chr4.3:24292212-24292231 | None:intergenic | 30.0% | |
| ! | AAACTATCCTCTTTTGTCAA+TGG | + | chr4.3:24293021-24293040 | None:intergenic | 30.0% |
| ! | ATTCAAATGTGATTGGTCAT+TGG | + | chr4.3:24293548-24293567 | None:intergenic | 30.0% |
| ! | TGAAATTTTCAATGCTCTAC+GGG | - | chr4.3:24292018-24292037 | MS.gene31960:intron | 30.0% |
| !! | AGTTCAGGTTTTTATACATC+TGG | - | chr4.3:24293347-24293366 | MS.gene31960:intron | 30.0% |
| !!! | GAAACTTGCATTTTAAGTTC+AGG | - | chr4.3:24293332-24293351 | MS.gene31960:intron | 30.0% |
| AAAGAGTGGTTAAGTTCCAT+TGG | - | chr4.3:24292083-24292102 | MS.gene31960:intron | 35.0% | |
| AAAGTTGAAGATTACATGGG+AGG | - | chr4.3:24292771-24292790 | MS.gene31960:intron | 35.0% | |
| AACAACTCGTTGATCATAGT+TGG | + | chr4.3:24292743-24292762 | None:intergenic | 35.0% | |
| AACTATGATCAACGAGTTGT+TGG | - | chr4.3:24292742-24292761 | MS.gene31960:intron | 35.0% | |
| AATGATTGACCAAGAACTCA+TGG | - | chr4.3:24292960-24292979 | MS.gene31960:intron | 35.0% | |
| ACAATCAGGCGTTAAACAAA+AGG | + | chr4.3:24293160-24293179 | None:intergenic | 35.0% | |
| ACAGGCTACTCCTAAAATTA+GGG | + | chr4.3:24292605-24292624 | None:intergenic | 35.0% | |
| ACATAGCGTATATGCATTCT+TGG | + | chr4.3:24293632-24293651 | None:intergenic | 35.0% | |
| ACATTGTTTGGATATTGCTG+TGG | + | chr4.3:24292661-24292680 | None:intergenic | 35.0% | |
| AGAAGATGAGAACTATAACC+AGG | - | chr4.3:24292564-24292583 | MS.gene31960:intron | 35.0% | |
| CATTGTTTGGATATTGCTGT+GGG | + | chr4.3:24292660-24292679 | None:intergenic | 35.0% | |
| CTAACAAAAAAGGAACTTCC+TGG | - | chr4.3:24293494-24293513 | MS.gene31960:intron | 35.0% | |
| CTACAACAGATGAACCATAT+CGG | - | chr4.3:24291948-24291967 | MS.gene31960:intron | 35.0% | |
| CTGGGAACCAAGAAAATATT+TGG | + | chr4.3:24292546-24292565 | None:intergenic | 35.0% | |
| GATTATAAATCGGGGATTGT+TGG | + | chr4.3:24291994-24292013 | None:intergenic | 35.0% | |
| GCAAATGATTGGAATGAGAA+CGG | + | chr4.3:24292338-24292357 | None:intergenic | 35.0% | |
| GCATGAACATTTGACATGTT+TGG | + | chr4.3:24291624-24291643 | None:intergenic | 35.0% | |
| GGTTATAGTTCTCATCTTCT+GGG | + | chr4.3:24292564-24292583 | None:intergenic | 35.0% | |
| GTAGTTGATCTACGAAGATT+TGG | + | chr4.3:24291932-24291951 | None:intergenic | 35.0% | |
| GTATTGCTAATGTACCCATA+CGG | - | chr4.3:24293824-24293843 | MS.gene31960:intron | 35.0% | |
| GTGAGATATAAACTTGAGAG+AGG | + | chr4.3:24292138-24292157 | None:intergenic | 35.0% | |
| TACAGGCTACTCCTAAAATT+AGG | + | chr4.3:24292606-24292625 | None:intergenic | 35.0% | |
| TCAGATTGAATGAATAGAGG+CGG | + | chr4.3:24294246-24294265 | None:intergenic | 35.0% | |
| TGAAATAGTTGTTACCGTCT+AGG | + | chr4.3:24292381-24292400 | None:intergenic | 35.0% | |
| TGGTTATAGTTCTCATCTTC+TGG | + | chr4.3:24292565-24292584 | None:intergenic | 35.0% | |
| TTGTCCAAAGTACAAACAAG+GGG | + | chr4.3:24292211-24292230 | None:intergenic | 35.0% | |
| TTTATTTGAGAATCTCCAGC+TGG | - | chr4.3:24291735-24291754 | MS.gene31960:intron | 35.0% | |
| ! | CATGGCATTATTCTTTTGCA+TGG | - | chr4.3:24293726-24293745 | MS.gene31960:intron | 35.0% |
| ! | CTAATACAATGTTGACTGTC+TGG | + | chr4.3:24291649-24291668 | None:intergenic | 35.0% |
| ! | GTATCCCTTTTATAATGACC+AGG | + | chr4.3:24293515-24293534 | None:intergenic | 35.0% |
| ! | TATCCTCATGATTTTTGTGC+AGG | - | chr4.3:24294336-24294355 | MS.gene31960:CDS | 35.0% |
| ! | TTACTTTGTTGTACAGACCA+TGG | + | chr4.3:24294379-24294398 | None:intergenic | 35.0% |
| !! | TTGTATACTCAGCTTTAAGC+TGG | + | chr4.3:24292858-24292877 | None:intergenic | 35.0% |
| AAGTTAGGTGTTCATCATGC+CGG | - | chr4.3:24293855-24293874 | MS.gene31960:intron | 40.0% | |
| AATAGTTGTTACCGTCTAGG+TGG | + | chr4.3:24292378-24292397 | None:intergenic | 40.0% | |
| ACCTATTCCAATGACGTTCT+AGG | - | chr4.3:24292487-24292506 | MS.gene31960:intron | 40.0% | |
| ACTACGCTCGTGTAATTAGA+AGG | - | chr4.3:24293076-24293095 | MS.gene31960:intron | 40.0% | |
| AGCACACAACTACCAATAAC+AGG | + | chr4.3:24293418-24293437 | None:intergenic | 40.0% | |
| AGGTTGGACAAGTTAAGTGT+GGG | - | chr4.3:24293792-24293811 | MS.gene31960:intron | 40.0% | |
| ATAGTTGGAGTAGAACTGAG+CGG | + | chr4.3:24292728-24292747 | None:intergenic | 40.0% | |
| ATCTACGAAGATTTGGGTAG+TGG | + | chr4.3:24291925-24291944 | None:intergenic | 40.0% | |
| CAGATTGAATGAATAGAGGC+GGG | + | chr4.3:24294245-24294264 | None:intergenic | 40.0% | |
| CATGATGAACACCTAACTTG+TGG | + | chr4.3:24293854-24293873 | None:intergenic | 40.0% | |
| CCACTTTGACATAAAGTGGA+GGG | + | chr4.3:24292053-24292072 | None:intergenic | 40.0% | |
| CCTCCACTTTATGTCAAAGT+GGG | - | chr4.3:24292051-24292070 | MS.gene31960:intron | 40.0% | |
| GAATGGTGAATGATCCGATA+TGG | + | chr4.3:24291965-24291984 | None:intergenic | 40.0% | |
| GACAAATTTGCAGTCGAGAT+AGG | - | chr4.3:24292226-24292245 | MS.gene31960:intron | 40.0% | |
| TCCTAGAACGTCATTGGAAT+AGG | + | chr4.3:24292491-24292510 | None:intergenic | 40.0% | |
| TGTCCCACTTTGACATAAAG+TGG | + | chr4.3:24292057-24292076 | None:intergenic | 40.0% | |
| TGTTTATGCCTCAAACAGAG+AGG | - | chr4.3:24292171-24292190 | MS.gene31960:CDS | 40.0% | |
| ! | ACATAAAGTGGAGGGTGTAA+AGG | + | chr4.3:24292045-24292064 | None:intergenic | 40.0% |
| ! | ATCAACCTGGCCCTAATTTT+AGG | - | chr4.3:24292592-24292611 | MS.gene31960:intron | 40.0% |
| ! | CTATCCTCTTTTGTCAATGG+CGG | + | chr4.3:24293018-24293037 | None:intergenic | 40.0% |
| ! | TATCCTCTTTTGTCAATGGC+GGG | + | chr4.3:24293017-24293036 | None:intergenic | 40.0% |
| ! | TTGAAAATTGTGTCGGCGTT+GGG | + | chr4.3:24292688-24292707 | None:intergenic | 40.0% |
| ! | TTTGAAAATTGTGTCGGCGT+TGG | + | chr4.3:24292689-24292708 | None:intergenic | 40.0% |
| !! | ATTCCAATGACGTTCTAGGA+CGG | - | chr4.3:24292491-24292510 | MS.gene31960:intron | 40.0% |
| !! | CTTGAGAGCATTGAGCAATA+GGG | + | chr4.3:24292284-24292303 | None:intergenic | 40.0% |
| !! | GTGGGACATTTTGAAAAGAG+TGG | - | chr4.3:24292069-24292088 | MS.gene31960:intron | 40.0% |
| !! | TCATCAGCCATTTGCTGTTT+GGG | + | chr4.3:24292465-24292484 | None:intergenic | 40.0% |
| !! | TTCATCAGCCATTTGCTGTT+TGG | + | chr4.3:24292466-24292485 | None:intergenic | 40.0% |
| AAACCAACTCCTCCCAAATC+TGG | - | chr4.3:24294397-24294416 | MS.gene31960:CDS | 45.0% | |
| AATGGGGTGGTGCAAATGAT+TGG | + | chr4.3:24292349-24292368 | None:intergenic | 45.0% | |
| ACAGCTTATGAGTTGCAGTG+CGG | + | chr4.3:24293116-24293135 | None:intergenic | 45.0% | |
| ATCATCAATCCCCCTACACT+TGG | + | chr4.3:24294184-24294203 | None:intergenic | 45.0% | |
| ATCGGATCATTCACCATTCG+TGG | - | chr4.3:24291966-24291985 | MS.gene31960:intron | 45.0% | |
| ATCTTCATCCAGTCCTGACA+TGG | + | chr4.3:24291835-24291854 | None:intergenic | 45.0% | |
| ATTGAATGAATAGAGGCGGG+TGG | + | chr4.3:24294242-24294261 | None:intergenic | 45.0% | |
| CATTTGACATGTTTGGCACC+TGG | + | chr4.3:24291617-24291636 | None:intergenic | 45.0% | |
| CCCACTTTGACATAAAGTGG+AGG | + | chr4.3:24292054-24292073 | None:intergenic | 45.0% | |
| CCCTCCACTTTATGTCAAAG+TGG | - | chr4.3:24292050-24292069 | MS.gene31960:intron | 45.0% | |
| CGCTGAAGAGTTCAGTATTG+AGG | + | chr4.3:24292420-24292439 | None:intergenic | 45.0% | |
| CGTCTAGGTGGTTCCAAAAT+GGG | + | chr4.3:24292366-24292385 | None:intergenic | 45.0% | |
| CTACTCCTAAAATTAGGGCC+AGG | + | chr4.3:24292600-24292619 | None:intergenic | 45.0% | |
| CTGCCTGCACAAAAATCATG+AGG | + | chr4.3:24294342-24294361 | None:intergenic | 45.0% | |
| GCGTATATGCATTCTTGGAG+AGG | + | chr4.3:24293627-24293646 | None:intergenic | 45.0% | |
| GTAGTGGTCCTTGAAAAGGA+CGG | + | chr4.3:24291909-24291928 | None:intergenic | 45.0% | |
| GTCTAGGTGGTTCCAAAATG+GGG | + | chr4.3:24292365-24292384 | None:intergenic | 45.0% | |
| GTGGGATATCATCATCGCTT+GGG | + | chr4.3:24292642-24292661 | None:intergenic | 45.0% | |
| TAACCAGGATGACATCAACC+TGG | - | chr4.3:24292579-24292598 | MS.gene31960:intron | 45.0% | |
| TAGTTGGAGTAGAACTGAGC+GGG | + | chr4.3:24292727-24292746 | None:intergenic | 45.0% | |
| TATAACCCTGATGCCATGTC+AGG | - | chr4.3:24291819-24291838 | MS.gene31960:intron | 45.0% | |
| TGACTGACCCAAACAGCAAA+TGG | - | chr4.3:24292455-24292474 | MS.gene31960:intron | 45.0% | |
| TGCCAGTCAAGTAGCCAAAA+TGG | + | chr4.3:24292517-24292536 | None:intergenic | 45.0% | |
| TGGACGAACAGTCCTGTTAT+TGG | - | chr4.3:24293403-24293422 | MS.gene31960:intron | 45.0% | |
| TGGGATATCATCATCGCTTG+GGG | + | chr4.3:24292641-24292660 | None:intergenic | 45.0% | |
| TGTGGGATATCATCATCGCT+TGG | + | chr4.3:24292643-24292662 | None:intergenic | 45.0% | |
| TTGAATGAATAGAGGCGGGT+GGG | + | chr4.3:24294241-24294260 | None:intergenic | 45.0% | |
| TTGGTCAATCATTTCGCCAG+TGG | + | chr4.3:24292953-24292972 | None:intergenic | 45.0% | |
| ! | ATAACTGGGGTGTTACCTTC+AGG | + | chr4.3:24291864-24291883 | None:intergenic | 45.0% |
| ! | ATTGGTAGTTGTGTGCTTGC+TGG | - | chr4.3:24293421-24293440 | MS.gene31960:intron | 45.0% |
| ! | CAGGTTGGACAAGTTAAGTG+TGG | - | chr4.3:24293791-24293810 | MS.gene31960:intron | 45.0% |
| ! | CTTTGTTGTACAGACCATGG+AGG | + | chr4.3:24294376-24294395 | None:intergenic | 45.0% |
| ! | GCTTCCCCTTGTTTGTACTT+TGG | - | chr4.3:24292204-24292223 | MS.gene31960:intron | 45.0% |
| ! | TAACTGGGGTGTTACCTTCA+GGG | + | chr4.3:24291863-24291882 | None:intergenic | 45.0% |
| ! | TCATTTGCACCACCCCATTT+TGG | - | chr4.3:24292350-24292369 | MS.gene31960:intron | 45.0% |
| ! | TGGCTGGAGCTTTGATAACT+GGG | + | chr4.3:24291878-24291897 | None:intergenic | 45.0% |
| ! | TTGGGTAGTGGTCCTTGAAA+AGG | + | chr4.3:24291913-24291932 | None:intergenic | 45.0% |
| !! | CTAATTTTCGAGGAACCAGC+TGG | + | chr4.3:24291753-24291772 | None:intergenic | 45.0% |
| !! | GCTTGAGAGCATTGAGCAAT+AGG | + | chr4.3:24292285-24292304 | None:intergenic | 45.0% |
| !! | TAACTTGTGGAGCACCGTAT+GGG | + | chr4.3:24293841-24293860 | None:intergenic | 45.0% |
| !! | TGCCGGTTTGTGACAGAAAT+CGG | - | chr4.3:24293872-24293891 | MS.gene31960:intron | 45.0% |
| !!! | CCATTTTGGAACCACCTAGA+CGG | - | chr4.3:24292364-24292383 | MS.gene31960:intron | 45.0% |
| AACCTGATCAGCTGTGACGA+AGG | + | chr4.3:24293777-24293796 | None:intergenic | 50.0% | |
| AACTGCTTGTCCTGAGCCTT+CGG | + | chr4.3:24292917-24292936 | None:intergenic | 50.0% | |
| AGACCCGCCATTGACAAAAG+AGG | - | chr4.3:24293011-24293030 | MS.gene31960:intron | 50.0% | |
| CAACCAGATTTGGGAGGAGT+TGG | + | chr4.3:24294403-24294422 | None:intergenic | 50.0% | |
| CAACTCAAGACCTGCTGCAA+TGG | - | chr4.3:24292885-24292904 | MS.gene31960:intron | 50.0% | |
| CAGCTTATGAGTTGCAGTGC+GGG | + | chr4.3:24293115-24293134 | None:intergenic | 50.0% | |
| CATACGGTGCTCCACAAGTT+AGG | - | chr4.3:24293840-24293859 | MS.gene31960:intron | 50.0% | |
| CCCCGATTTCTGTCACAAAC+CGG | + | chr4.3:24293877-24293896 | None:intergenic | 50.0% | |
| CCGTCTAGGTGGTTCCAAAA+TGG | + | chr4.3:24292367-24292386 | None:intergenic | 50.0% | |
| GATGAAGATACGACCCCTGA+AGG | - | chr4.3:24291846-24291865 | MS.gene31960:intron | 50.0% | |
| GTATTTAGCCTCCTCAGCAG+TGG | + | chr4.3:24292116-24292135 | None:intergenic | 50.0% | |
| TAGGTGGTTCCAAAATGGGG+TGG | + | chr4.3:24292362-24292381 | None:intergenic | 50.0% | |
| TATCATCATCGCTTGGGGCT+AGG | + | chr4.3:24292636-24292655 | None:intergenic | 50.0% | |
| TCAATGCTCTCAAGCCGACT+CGG | - | chr4.3:24292290-24292309 | MS.gene31960:intron | 50.0% | |
| TGGCATGAGCCATGAGTTCT+TGG | + | chr4.3:24292972-24292991 | None:intergenic | 50.0% | |
| TTCCTTCGTCACAGCTGATC+AGG | - | chr4.3:24293772-24293791 | MS.gene31960:intron | 50.0% | |
| TTCGTCACAGCTGATCAGGT+TGG | - | chr4.3:24293776-24293795 | MS.gene31960:intron | 50.0% | |
| TTGACATGTTTGGCACCTGG+TGG | + | chr4.3:24291614-24291633 | None:intergenic | 50.0% | |
| TTGTGCAGGCAGACAACAAG+CGG | - | chr4.3:24294350-24294369 | MS.gene31960:CDS | 50.0% | |
| ! | AACTGGGGTGTTACCTTCAG+GGG | + | chr4.3:24291862-24291881 | None:intergenic | 50.0% |
| ! | CCGGTTTGTGACAGAAATCG+GGG | - | chr4.3:24293874-24293893 | MS.gene31960:intron | 50.0% |
| ! | CTGGCTGGAGCTTTGATAAC+TGG | + | chr4.3:24291879-24291898 | None:intergenic | 50.0% |
| ! | GGCTGGAGCTTTGATAACTG+GGG | + | chr4.3:24291877-24291896 | None:intergenic | 50.0% |
| !! | CTAACTTGTGGAGCACCGTA+TGG | + | chr4.3:24293842-24293861 | None:intergenic | 50.0% |
| !! | GAGCATTGAGCAATAGGGTG+AGG | + | chr4.3:24292279-24292298 | None:intergenic | 50.0% |
| !! | GCCGGTTTGTGACAGAAATC+GGG | - | chr4.3:24293873-24293892 | MS.gene31960:intron | 50.0% |
| !!! | ACGTTCTAGGACGGCCATTT+TGG | - | chr4.3:24292500-24292519 | MS.gene31960:intron | 50.0% |
| !!! | GGCCATTTTGGCTACTTGAC+TGG | - | chr4.3:24292512-24292531 | MS.gene31960:intron | 50.0% |
| ATGGATACAGCCGAAGGCTC+AGG | - | chr4.3:24292904-24292923 | MS.gene31960:intron | 55.0% | |
| ATTTCGCCAGTGGCGCGAAA+TGG | + | chr4.3:24292943-24292962 | None:intergenic | 55.0% | |
| CCAGTCCTGACATGGCATCA+GGG | + | chr4.3:24291827-24291846 | None:intergenic | 55.0% | |
| CCTCAAACAGAGAGGCTTGC+AGG | - | chr4.3:24292179-24292198 | MS.gene31960:CDS | 55.0% | |
| CCTGCAAGCCTCTCTGTTTG+AGG | + | chr4.3:24292182-24292201 | None:intergenic | 55.0% | |
| GCGTTGGGCACGACATTGTT+TGG | + | chr4.3:24292673-24292692 | None:intergenic | 55.0% | |
| GCTGCAATGGATACAGCCGA+AGG | - | chr4.3:24292898-24292917 | MS.gene31960:intron | 55.0% | |
| GGAATGAGAACGGAGCTGTC+AGG | + | chr4.3:24292328-24292347 | None:intergenic | 55.0% | |
| GGGATTGTTGGGTCCACGAA+TGG | + | chr4.3:24291982-24292001 | None:intergenic | 55.0% | |
| GTGGTCCTTGAAAAGGACGG+AGG | + | chr4.3:24291906-24291925 | None:intergenic | 55.0% | |
| TCCAGTCCTGACATGGCATC+AGG | + | chr4.3:24291828-24291847 | None:intergenic | 55.0% | |
| TCGGCTGTATCCATTGCAGC+AGG | + | chr4.3:24292898-24292917 | None:intergenic | 55.0% | |
| TGAAAAGGACGGAGGTCTGC+TGG | + | chr4.3:24291898-24291917 | None:intergenic | 55.0% | |
| TGGCCGTCCTAGAACGTCAT+TGG | + | chr4.3:24292497-24292516 | None:intergenic | 55.0% | |
| TTGGAACTCCACCACTGCTG+AGG | - | chr4.3:24292102-24292121 | MS.gene31960:intron | 55.0% | |
| TTTAGCCTCCTCAGCAGTGG+TGG | + | chr4.3:24292113-24292132 | None:intergenic | 55.0% | |
| TTTCGCCAGTGGCGCGAAAT+GGG | + | chr4.3:24292942-24292961 | None:intergenic | 55.0% | |
| ! | ACTCTTCAGCGCACTGATGC+AGG | - | chr4.3:24292429-24292448 | MS.gene31960:intron | 55.0% |
| ! | CAATGCTCTCAAGCCGACTC+GGG | - | chr4.3:24292291-24292310 | MS.gene31960:intron | 55.0% |
| ! | CACCTGGTGGATACGAAAGC+AGG | + | chr4.3:24291601-24291620 | None:intergenic | 55.0% |
| ! | CAGCAGTGGTGGAGTTCCAA+TGG | + | chr4.3:24292102-24292121 | None:intergenic | 55.0% |
| ! | CTGGTGGATACGAAAGCAGG+CGG | + | chr4.3:24291598-24291617 | None:intergenic | 55.0% |
| ! | GCAGACCTCCGTCCTTTTCA+AGG | - | chr4.3:24291898-24291917 | MS.gene31960:intron | 55.0% |
| CAGACAACAAGCGGCCTCCA+TGG | - | chr4.3:24294359-24294378 | MS.gene31960:CDS | 60.0% | |
| CCCTGATGCCATGTCAGGAC+TGG | - | chr4.3:24291824-24291843 | MS.gene31960:intron | 60.0% | |
| CGCCTGCTTTCGTATCCACC+AGG | - | chr4.3:24291596-24291615 | MS.gene31960:CDS | 60.0% | |
| GAACTCCACCACTGCTGAGG+AGG | - | chr4.3:24292105-24292124 | MS.gene31960:intron | 60.0% | |
| GTTGTCCCATTTCGCGCCAC+TGG | - | chr4.3:24292934-24292953 | MS.gene31960:intron | 60.0% | |
| TCATCGCTTGGGGCTAGGTG+TGG | + | chr4.3:24292631-24292650 | None:intergenic | 60.0% | |
| TGGGGCTAGGTGTGGAGTAC+AGG | + | chr4.3:24292623-24292642 | None:intergenic | 60.0% | |
| !! | GGGCCAGGTTGATGTCATCC+TGG | + | chr4.3:24292585-24292604 | None:intergenic | 60.0% |
| AAGGACGGAGGTCTGCTGGC+TGG | + | chr4.3:24291894-24291913 | None:intergenic | 65.0% | |
| GGCGTTCCAGTGACCCGAGT+CGG | + | chr4.3:24292307-24292326 | None:intergenic | 65.0% | |
| !! | CTCAAGCCGACTCGGGTCAC+TGG | - | chr4.3:24292298-24292317 | MS.gene31960:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24291575 | 24294426 | 24291575 | ID=MS.gene31960 |
| chr4.3 | mRNA | 24291575 | 24294426 | 24291575 | ID=MS.gene31960.t1;Parent=MS.gene31960 |
| chr4.3 | exon | 24294330 | 24294426 | 24294330 | ID=MS.gene31960.t1.exon1;Parent=MS.gene31960.t1 |
| chr4.3 | CDS | 24294330 | 24294426 | 24294330 | ID=cds.MS.gene31960.t1;Parent=MS.gene31960.t1 |
| chr4.3 | exon | 24292106 | 24292215 | 24292106 | ID=MS.gene31960.t1.exon2;Parent=MS.gene31960.t1 |
| chr4.3 | CDS | 24292106 | 24292215 | 24292106 | ID=cds.MS.gene31960.t1;Parent=MS.gene31960.t1 |
| chr4.3 | exon | 24291575 | 24291643 | 24291575 | ID=MS.gene31960.t1.exon3;Parent=MS.gene31960.t1 |
| chr4.3 | CDS | 24291575 | 24291643 | 24291575 | ID=cds.MS.gene31960.t1;Parent=MS.gene31960.t1 |
| Gene Sequence |
| Protein sequence |
