Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32519.t1 | XP_003616470.1 | 97.6 | 369 | 9 | 0 | 1 | 369 | 1 | 369 | 9.20E-213 | 749.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32519.t1 | G7KGV1 | 97.6 | 369 | 9 | 0 | 1 | 369 | 1 | 369 | 6.7e-213 | 749.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene32519 | 0.809607 | 1.74E-50 | -1.69E-46 |
| MS.gene049491 | MS.gene32519 | 0.805829 | 1.10E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene32519 | 0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene32519 | 0.879721 | 9.89E-70 | -1.69E-46 |
| MS.gene050301 | MS.gene32519 | 0.827845 | 1.25E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene32519 | 0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene32519 | 0.825714 | 4.03E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene32519 | 0.803657 | 3.14E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene32519 | 0.813001 | 3.19E-51 | -1.69E-46 |
| MS.gene051240 | MS.gene32519 | 0.82383 | 1.12E-53 | -1.69E-46 |
| MS.gene051242 | MS.gene32519 | 0.841576 | 4.37E-58 | -1.69E-46 |
| MS.gene051244 | MS.gene32519 | 0.81222 | 4.73E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene32519 | 0.803236 | 3.84E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene32519 | 0.835964 | 1.23E-56 | -1.69E-46 |
| MS.gene052178 | MS.gene32519 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene32519 | 0.828359 | 9.40E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene32519 | 0.811634 | 6.35E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene32519 | 0.816389 | 5.67E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene32519 | 0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene32519 | 0.807396 | 5.16E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene32519 | 0.806478 | 8.07E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene32519 | 0.820031 | 8.50E-53 | -1.69E-46 |
| MS.gene053971 | MS.gene32519 | 0.820155 | 7.96E-53 | -1.69E-46 |
| MS.gene05455 | MS.gene32519 | 0.814549 | 1.46E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene32519 | 0.806506 | 7.96E-50 | -1.69E-46 |
| MS.gene055390 | MS.gene32519 | 0.822437 | 2.37E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene32519 | 0.820778 | 5.73E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene32519 | 0.844736 | 6.29E-59 | -1.69E-46 |
| MS.gene055971 | MS.gene32519 | 0.811312 | 7.46E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene32519 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene32519 | 0.823371 | 1.44E-53 | -1.69E-46 |
| MS.gene057121 | MS.gene32519 | 0.819083 | 1.40E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene32519 | 0.859988 | 2.83E-63 | -1.69E-46 |
| MS.gene05811 | MS.gene32519 | 0.885602 | 7.06E-72 | -1.69E-46 |
| MS.gene058142 | MS.gene32519 | 0.815429 | 9.29E-52 | -1.69E-46 |
| MS.gene058276 | MS.gene32519 | 0.813605 | 2.35E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene32519 | 0.801871 | 7.34E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene32519 | 0.808496 | 3.01E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene32519 | 0.815642 | 8.33E-52 | -1.69E-46 |
| MS.gene058993 | MS.gene32519 | 0.806426 | 8.27E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene32519 | 0.841218 | 5.43E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene32519 | 0.848465 | 6.02E-60 | -1.69E-46 |
| MS.gene059597 | MS.gene32519 | 0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene32519 | 0.810707 | 1.01E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene32519 | 0.852363 | 4.85E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene32519 | 0.81997 | 8.78E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene32519 | 0.86248 | 4.92E-64 | -1.69E-46 |
| MS.gene06090 | MS.gene32519 | 0.804978 | 1.67E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene32519 | 0.803705 | 3.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32519.t1 | MTR_5g080700 | 97.561 | 369 | 9 | 0 | 1 | 369 | 1 | 369 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32519.t1 | AT3G14900 | 68.301 | 306 | 89 | 3 | 72 | 369 | 60 | 365 | 8.78e-148 | 431 |
Find 92 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAAACCTGATAGTGAATT+TGG | 0.130783 | 5.2:-68598662 | MS.gene32519:CDS |
| AATTTATTGTAAGGTGAAAA+TGG | 0.160932 | 5.2:+68598773 | None:intergenic |
| CACTATCAGGTTTCGTGTTT+CGG | 0.165811 | 5.2:+68598669 | None:intergenic |
| GTAAGGTGAAAATGGGTTTA+AGG | 0.168800 | 5.2:+68598781 | None:intergenic |
| TCTGAAATGGCTGCTGATTT+TGG | 0.188371 | 5.2:-68598176 | MS.gene32519:CDS |
| GCAAGAATTCAGTTGTAAAA+TGG | 0.193149 | 5.2:+68598810 | None:intergenic |
| TGATCGAATGGTGAGGTTTA+TGG | 0.229882 | 5.2:-68598375 | MS.gene32519:CDS |
| TTGAAATTTGATTAGGGTTT+GGG | 0.238914 | 5.2:+68598724 | None:intergenic |
| TGGTATAAGTATGGTGAATA+TGG | 0.271027 | 5.2:-68598317 | MS.gene32519:CDS |
| TGTGGGGTTGAAATTTGATT+AGG | 0.275563 | 5.2:+68598717 | None:intergenic |
| GTGTGTAGTAGAAGAGATTT+TGG | 0.277398 | 5.2:-68598617 | MS.gene32519:CDS |
| ACGGGTGGTGCGTCGTCTTC+TGG | 0.288444 | 5.2:-68598569 | MS.gene32519:CDS |
| ACTATCAGGTTTCGTGTTTC+GGG | 0.289290 | 5.2:+68598670 | None:intergenic |
| AGAAGGATGATCCGAATTTA+AGG | 0.298146 | 5.2:-68598352 | MS.gene32519:CDS |
| AAAATCCCAAATTCACTATC+AGG | 0.308274 | 5.2:+68598656 | None:intergenic |
| GTGGGGTTGAAATTTGATTA+GGG | 0.314782 | 5.2:+68598718 | None:intergenic |
| GTGAATATGGGCCGTATTCT+TGG | 0.329544 | 5.2:-68598304 | MS.gene32519:CDS |
| GAAAATGGGTTTAAGGTTCT+AGG | 0.356727 | 5.2:+68598788 | None:intergenic |
| CGCTTGACATACACAATATC+AGG | 0.359861 | 5.2:+68597933 | None:intergenic |
| GTTGAGACGTGTACTTATTA+TGG | 0.361515 | 5.2:-68597792 | MS.gene32519:CDS |
| CCGTATGATTGGTATAAGTA+TGG | 0.362102 | 5.2:-68598326 | MS.gene32519:CDS |
| ATTTATTGTAAGGTGAAAAT+GGG | 0.378152 | 5.2:+68598774 | None:intergenic |
| ATTAGATAAGTGGACTTTGA+TGG | 0.391474 | 5.2:-68598012 | MS.gene32519:CDS |
| GTTGAAATTTGATTAGGGTT+TGG | 0.396176 | 5.2:+68598723 | None:intergenic |
| CAAGAATTCAGTTGTAAAAT+GGG | 0.397794 | 5.2:+68598811 | None:intergenic |
| ATTTAAGGCATCCGTATGAT+TGG | 0.406925 | 5.2:-68598337 | MS.gene32519:CDS |
| CGAAACCTGATAGTGAATTT+GGG | 0.410945 | 5.2:-68598661 | MS.gene32519:CDS |
| GCCGGTTAGTGGTGGGATTA+CGG | 0.412984 | 5.2:-68598261 | MS.gene32519:CDS |
| TCTTGGCGTGGGATTGTTGT+TGG | 0.413217 | 5.2:-68598287 | MS.gene32519:CDS |
| TCCGTAATCCCACCACTAAC+CGG | 0.420970 | 5.2:+68598260 | None:intergenic |
| GCATCCAAAGTGGAGAGTTT+CGG | 0.425817 | 5.2:-68598096 | MS.gene32519:CDS |
| TTGTTGCAGCAGATTGGTCT+TGG | 0.435120 | 5.2:-68598401 | MS.gene32519:CDS |
| AATTTAGATGAGCAATTTCA+AGG | 0.454598 | 5.2:+68596393 | None:intergenic |
| GTTGTTGGTGAGCCGGTTAG+TGG | 0.456995 | 5.2:-68598272 | MS.gene32519:CDS |
| TCATACGGATGCCTTAAATT+CGG | 0.467531 | 5.2:+68598341 | None:intergenic |
| ACAATCCCACGCCAAGAATA+CGG | 0.469604 | 5.2:+68598293 | None:intergenic |
| GTCGTCTTCTGGTGGTAGAT+TGG | 0.474291 | 5.2:-68598558 | MS.gene32519:CDS |
| GGAGATTGAGAAATCTGAAA+TGG | 0.474478 | 5.2:-68598189 | MS.gene32519:CDS |
| AGTTGGATCAAACTAAGTTA+AGG | 0.475032 | 5.2:-68598139 | MS.gene32519:CDS |
| GGATAATTCCCACGTCCCCT+AGG | 0.481600 | 5.2:+68598443 | None:intergenic |
| AAGATTTGAAGTTGTTTCGT+TGG | 0.489011 | 5.2:-68598693 | MS.gene32519:CDS |
| GAGGATTTGTTGCAGCAGAT+TGG | 0.492138 | 5.2:-68598407 | MS.gene32519:CDS |
| TTAGATAAGTGGACTTTGAT+GGG | 0.499763 | 5.2:-68598011 | MS.gene32519:CDS |
| AGGGTTTGGGATTTATTGAA+AGG | 0.501241 | 5.2:+68598737 | None:intergenic |
| AATGGTGAGGTTTATGGAGA+AGG | 0.501783 | 5.2:-68598369 | MS.gene32519:CDS |
| TGGGATTGTTGTTGGTGAGC+CGG | 0.502603 | 5.2:-68598279 | MS.gene32519:CDS |
| CGGAACTTCCGTGGCAGCAA+TGG | 0.504345 | 5.2:-68598076 | MS.gene32519:CDS |
| GGTATAAGTATGGTGAATAT+GGG | 0.506400 | 5.2:-68598316 | MS.gene32519:CDS |
| TCCGTGCGAGGATCAAGAAA+TGG | 0.508804 | 5.2:+68597855 | None:intergenic |
| AGTTCCGAAACTCTCCACTT+TGG | 0.512515 | 5.2:+68598092 | None:intergenic |
| ACTTGTGAAGGTGAATCAAA+AGG | 0.514790 | 5.2:-68597757 | MS.gene32519:CDS |
| GTAAACAGAGATTAGATAAG+TGG | 0.514937 | 5.2:-68598022 | MS.gene32519:CDS |
| AAGTGAAGGATCATGAAGAG+TGG | 0.518155 | 5.2:-68598214 | MS.gene32519:CDS |
| TGTCAGTTAGAAAATGATGA+TGG | 0.526533 | 5.2:-68597819 | MS.gene32519:CDS |
| TGGACTTTGATGGGTAGACT+TGG | 0.527390 | 5.2:-68598002 | MS.gene32519:CDS |
| GAACAAGGCGAGGTCGTTGG+TGG | 0.532527 | 5.2:-68597979 | MS.gene32519:CDS |
| AGTGAAGGATCATGAAGAGT+GGG | 0.533298 | 5.2:-68598213 | MS.gene32519:CDS |
| GAAGGATCATGAAGAGTGGG+AGG | 0.533393 | 5.2:-68598210 | MS.gene32519:CDS |
| GATGGGTAGACTTGGGAACA+AGG | 0.541745 | 5.2:-68597994 | MS.gene32519:CDS |
| ACTAATGTCCATTGCTGCCA+CGG | 0.545549 | 5.2:+68598068 | None:intergenic |
| TATGGGCCGTATTCTTGGCG+TGG | 0.547439 | 5.2:-68598299 | MS.gene32519:CDS |
| ATGGGCCGTATTCTTGGCGT+GGG | 0.548779 | 5.2:-68598298 | MS.gene32519:CDS |
| TCAAACCTACACTGGAACAC+CGG | 0.551313 | 5.2:+68597909 | None:intergenic |
| GATAATTCCCACGTCCCCTA+GGG | 0.552003 | 5.2:+68598444 | None:intergenic |
| ATTTAGATGAGCAATTTCAA+GGG | 0.556182 | 5.2:+68596394 | None:intergenic |
| AGCGTCCGGTGTTCCAGTGT+AGG | 0.561427 | 5.2:-68597914 | MS.gene32519:CDS |
| GACGATAATTAATGAAGTGA+AGG | 0.567261 | 5.2:-68598228 | MS.gene32519:CDS |
| AGTGAGGTGGTACTTGAAGC+TGG | 0.567986 | 5.2:-68598044 | MS.gene32519:CDS |
| GTTGGTGAGCCGGTTAGTGG+TGG | 0.568225 | 5.2:-68598269 | MS.gene32519:CDS |
| CTTGTGGCTCAAACCTACAC+TGG | 0.570916 | 5.2:+68597901 | None:intergenic |
| TCCATTTCTTGATCCTCGCA+CGG | 0.582367 | 5.2:-68597856 | MS.gene32519:CDS |
| TCTTCTGGTGGTAGATTGGA+AGG | 0.584210 | 5.2:-68598554 | MS.gene32519:CDS |
| CCATACTTATACCAATCATA+CGG | 0.586671 | 5.2:+68598326 | None:intergenic |
| TGGGAACAAGGCGAGGTCGT+TGG | 0.588053 | 5.2:-68597982 | MS.gene32519:CDS |
| TGCGGGTCGTAGTAAGAAGA+CGG | 0.591662 | 5.2:-68598588 | MS.gene32519:CDS |
| TTGGTGAGCCGGTTAGTGGT+GGG | 0.598420 | 5.2:-68598268 | MS.gene32519:CDS |
| GGAGAGTTTCGGAACTTCCG+TGG | 0.600733 | 5.2:-68598085 | MS.gene32519:CDS |
| GGACTTTGATGGGTAGACTT+GGG | 0.600845 | 5.2:-68598001 | MS.gene32519:CDS |
| GCGGGTCGTAGTAAGAAGAC+GGG | 0.610634 | 5.2:-68598587 | MS.gene32519:CDS |
| AGGTAATCTTGTTCCGTGCG+AGG | 0.617139 | 5.2:+68597843 | None:intergenic |
| TATTGTGTATGTCAAGCGTC+CGG | 0.618713 | 5.2:-68597928 | MS.gene32519:CDS |
| GAGACGTGTACTTATTATGG+TGG | 0.632746 | 5.2:-68597789 | MS.gene32519:CDS |
| GCAATGGACATTAGTTAGTG+AGG | 0.638320 | 5.2:-68598060 | MS.gene32519:CDS |
| GACGGATGAAACGTAATGCG+AGG | 0.643669 | 5.2:-68598514 | MS.gene32519:CDS |
| GGTGGTGCGTCGTCTTCTGG+TGG | 0.646886 | 5.2:-68598566 | MS.gene32519:CDS |
| TGGATTGTGTAAACTTGTGA+AGG | 0.667346 | 5.2:-68597769 | MS.gene32519:CDS |
| TGGTCTTGGATATGATCGAA+TGG | 0.675588 | 5.2:-68598387 | MS.gene32519:CDS |
| ATGGACATTAGTTAGTGAGG+TGG | 0.676342 | 5.2:-68598057 | MS.gene32519:CDS |
| GTAGACTTGGGAACAAGGCG+AGG | 0.677293 | 5.2:-68597989 | MS.gene32519:CDS |
| TTGGATATGATCGAATGGTG+AGG | 0.678613 | 5.2:-68598382 | MS.gene32519:CDS |
| GGTCGTAGTAAGAAGACGGG+TGG | 0.679738 | 5.2:-68598584 | MS.gene32519:CDS |
| TGGTGGCGCAATGTGCAGCG+TGG | 0.711158 | 5.2:-68597962 | MS.gene32519:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGGAAAATTTATTGTA+AGG | + | chr5.2:68596456-68596475 | None:intergenic | 15.0% |
| !! | TTTATTGAAAGGTTTAAAAA+AGG | + | chr5.2:68596472-68596491 | None:intergenic | 15.0% |
| !! | AATTTATTGTAAGGTGAAAA+TGG | + | chr5.2:68596447-68596466 | None:intergenic | 20.0% |
| !! | ATTTATTGTAAGGTGAAAAT+GGG | + | chr5.2:68596446-68596465 | None:intergenic | 20.0% |
| !! | TGAAAAAAAGTCAAAATGTT+TGG | - | chr5.2:68597526-68597545 | MS.gene32519:intron | 20.0% |
| !!! | AAACTAAGTTAAGGTATTTT+TGG | - | chr5.2:68597087-68597106 | MS.gene32519:intron | 20.0% |
| !!! | AACTAAGTTAAGGTATTTTT+GGG | - | chr5.2:68597088-68597107 | MS.gene32519:intron | 20.0% |
| !!! | ATTTTACTTACATTTGTGTT+AGG | - | chr5.2:68598311-68598330 | MS.gene32519:CDS | 20.0% |
| !!! | ATTTTACTTACTTTTGTGTT+AGG | - | chr5.2:68598370-68598389 | MS.gene32519:CDS | 20.0% |
| !!! | CATAATCTTTTTCAGAAAAT+AGG | + | chr5.2:68598410-68598429 | None:intergenic | 20.0% |
| !!! | TTAAAGAGATTGTTTTAACT+AGG | - | chr5.2:68598194-68598213 | MS.gene32519:CDS | 20.0% |
| ! | ATAACAAGATAACGAGAAAA+TGG | - | chr5.2:68598685-68598704 | MS.gene32519:CDS | 25.0% |
| ! | ATGATACTGAGATTATAGAT+TGG | - | chr5.2:68597678-68597697 | MS.gene32519:intron | 25.0% |
| ! | ATGTATGTAACATTTCTTTC+TGG | - | chr5.2:68598482-68598501 | MS.gene32519:CDS | 25.0% |
| ! | CAAGAATTCAGTTGTAAAAT+GGG | + | chr5.2:68596409-68596428 | None:intergenic | 25.0% |
| ! | CATGATAGAACATAAATTAC+TGG | - | chr5.2:68598628-68598647 | MS.gene32519:CDS | 25.0% |
| ! | GCATTAAAAAAGTTATCTTG+TGG | + | chr5.2:68597335-68597354 | None:intergenic | 25.0% |
| ! | TAACTCATTCTACTAAACTT+AGG | + | chr5.2:68598351-68598370 | None:intergenic | 25.0% |
| ! | TGTATGTAACATTTCTTTCT+GGG | - | chr5.2:68598483-68598502 | MS.gene32519:CDS | 25.0% |
| ! | TTCTCAATTTATGACTCAAT+GGG | - | chr5.2:68598562-68598581 | MS.gene32519:CDS | 25.0% |
| ! | TTGAAATTTGATTAGGGTTT+GGG | + | chr5.2:68596496-68596515 | None:intergenic | 25.0% |
| !! | AAACAACTTCAAATCTTTTG+TGG | + | chr5.2:68596521-68596540 | None:intergenic | 25.0% |
| !! | AAATGCTCTTAAAGTTTGTT+CGG | - | chr5.2:68598587-68598606 | MS.gene32519:CDS | 25.0% |
| !! | AACAACTTCAAATCTTTTGT+GGG | + | chr5.2:68596520-68596539 | None:intergenic | 25.0% |
| !! | GAATTATCCCGATAATTTTT+CGG | - | chr5.2:68596788-68596807 | MS.gene32519:intron | 25.0% |
| !!! | AAAATGTTTGGAGTTTCTTT+TGG | - | chr5.2:68597538-68597557 | MS.gene32519:intron | 25.0% |
| !!! | AAATGTTTGGAGTTTCTTTT+GGG | - | chr5.2:68597539-68597558 | MS.gene32519:intron | 25.0% |
| !!! | TTCTTAATCTTTTTTCTCCA+CGG | + | chr5.2:68598109-68598128 | None:intergenic | 25.0% |
| !!! | TTGTTCTTAATTTCTGGTTT+AGG | - | chr5.2:68598798-68598817 | MS.gene32519:CDS | 25.0% |
| AAAATCCCAAATTCACTATC+AGG | + | chr5.2:68596564-68596583 | None:intergenic | 30.0% | |
| AAATCCTCCGAAAAATTATC+GGG | + | chr5.2:68596798-68596817 | None:intergenic | 30.0% | |
| AAGCAATAGAAAATATGGCA+AGG | - | chr5.2:68597927-68597946 | MS.gene32519:CDS | 30.0% | |
| ACAAGATTTCTGTAACTGAA+AGG | + | chr5.2:68598175-68598194 | None:intergenic | 30.0% | |
| AGAGTGATGTTGAGAAAATT+AGG | - | chr5.2:68598278-68598297 | MS.gene32519:CDS | 30.0% | |
| AGTTGGATCAAACTAAGTTA+AGG | - | chr5.2:68597078-68597097 | MS.gene32519:intron | 30.0% | |
| ATATCATCATCTTCTTCATC+AGG | + | chr5.2:68597647-68597666 | None:intergenic | 30.0% | |
| ATGTGTCAAACACTACTTAT+TGG | - | chr5.2:68598763-68598782 | MS.gene32519:CDS | 30.0% | |
| CAAATCCTCCGAAAAATTAT+CGG | + | chr5.2:68596799-68596818 | None:intergenic | 30.0% | |
| CCATACTTATACCAATCATA+CGG | + | chr5.2:68596894-68596913 | None:intergenic | 30.0% | |
| GAAGAAGATGATGATATTGT+TGG | - | chr5.2:68597650-68597669 | MS.gene32519:intron | 30.0% | |
| GACGATAATTAATGAAGTGA+AGG | - | chr5.2:68596989-68597008 | MS.gene32519:intron | 30.0% | |
| GCAAGAATTCAGTTGTAAAA+TGG | + | chr5.2:68596410-68596429 | None:intergenic | 30.0% | |
| GGTATAAGTATGGTGAATAT+GGG | - | chr5.2:68596901-68596920 | MS.gene32519:intron | 30.0% | |
| GTAAACAGAGATTAGATAAG+TGG | - | chr5.2:68597195-68597214 | MS.gene32519:intron | 30.0% | |
| GTTCTCAATTTATGACTCAA+TGG | - | chr5.2:68598561-68598580 | MS.gene32519:CDS | 30.0% | |
| GTTGAAATTTGATTAGGGTT+TGG | + | chr5.2:68596497-68596516 | None:intergenic | 30.0% | |
| TACATCCATATACTAAAGAG+TGG | - | chr5.2:68597582-68597601 | MS.gene32519:intron | 30.0% | |
| TATGGATGTAAAATTTGCAC+TGG | + | chr5.2:68597572-68597591 | None:intergenic | 30.0% | |
| TCTCAATTTATGACTCAATG+GGG | - | chr5.2:68598563-68598582 | MS.gene32519:CDS | 30.0% | |
| TGAGATTATAGATTGGATTG+AGG | - | chr5.2:68597685-68597704 | MS.gene32519:intron | 30.0% | |
| TGCAGAAGCAATAGAAAATA+TGG | - | chr5.2:68597922-68597941 | MS.gene32519:CDS | 30.0% | |
| TGGTATAAGTATGGTGAATA+TGG | - | chr5.2:68596900-68596919 | MS.gene32519:intron | 30.0% | |
| TGTCAGTTAGAAAATGATGA+TGG | - | chr5.2:68597398-68597417 | MS.gene32519:intron | 30.0% | |
| TTGAGGTTGTTCTTAATTTC+TGG | - | chr5.2:68598792-68598811 | MS.gene32519:CDS | 30.0% | |
| ! | AAGATTTGAAGTTGTTTCGT+TGG | - | chr5.2:68596524-68596543 | MS.gene32519:intron | 30.0% |
| ! | ACAACTTCAAATCTTTTGTG+GGG | + | chr5.2:68596519-68596538 | None:intergenic | 30.0% |
| ! | ATTAGATAAGTGGACTTTGA+TGG | - | chr5.2:68597205-68597224 | MS.gene32519:intron | 30.0% |
| ! | CATCATTTTCTAACTGACAA+AGG | + | chr5.2:68597397-68597416 | None:intergenic | 30.0% |
| ! | TGTGTAGTAGAAGAGATTTT+GGG | - | chr5.2:68596601-68596620 | MS.gene32519:intron | 30.0% |
| ! | TTAGATAAGTGGACTTTGAT+GGG | - | chr5.2:68597206-68597225 | MS.gene32519:intron | 30.0% |
| ! | TTATAGGTTGAAAAACCCTA+GGG | - | chr5.2:68596758-68596777 | MS.gene32519:intron | 30.0% |
| ! | TTTAACTAGGCATGCAATTT+TGG | - | chr5.2:68598207-68598226 | MS.gene32519:CDS | 30.0% |
| ! | TTTATAGGTTGAAAAACCCT+AGG | - | chr5.2:68596757-68596776 | MS.gene32519:intron | 30.0% |
| !!! | GGTATTTTTGGGTTTTCATT+AGG | - | chr5.2:68597099-68597118 | MS.gene32519:intron | 30.0% |
| !!! | TTGCTGAGAGTTTGTTTTAT+AGG | - | chr5.2:68596742-68596761 | MS.gene32519:intron | 30.0% |
| ACTTGTGAAGGTGAATCAAA+AGG | - | chr5.2:68597460-68597479 | MS.gene32519:intron | 35.0% | |
| AGAAGGATGATCCGAATTTA+AGG | - | chr5.2:68596865-68596884 | MS.gene32519:intron | 35.0% | |
| ATAGATTGGATTGAGGATGA+AGG | - | chr5.2:68597692-68597711 | MS.gene32519:intron | 35.0% | |
| CATGTTTGTCATTAACACTG+TGG | - | chr5.2:68598507-68598526 | MS.gene32519:CDS | 35.0% | |
| CCGTATGATTGGTATAAGTA+TGG | - | chr5.2:68596891-68596910 | MS.gene32519:intron | 35.0% | |
| CTACTTATTGGTAAAGCTTG+AGG | - | chr5.2:68598775-68598794 | MS.gene32519:CDS | 35.0% | |
| CTCAATTTATGACTCAATGG+GGG | - | chr5.2:68598564-68598583 | MS.gene32519:CDS | 35.0% | |
| GGAGATTGAGAAATCTGAAA+TGG | - | chr5.2:68597028-68597047 | MS.gene32519:intron | 35.0% | |
| GTGGGGTTGAAATTTGATTA+GGG | + | chr5.2:68596502-68596521 | None:intergenic | 35.0% | |
| GTTGAGACGTGTACTTATTA+TGG | - | chr5.2:68597425-68597444 | MS.gene32519:intron | 35.0% | |
| TAAGAAGCAAATGATGACAG+CGG | - | chr5.2:68597979-68597998 | MS.gene32519:CDS | 35.0% | |
| TCATACGGATGCCTTAAATT+CGG | + | chr5.2:68596879-68596898 | None:intergenic | 35.0% | |
| TCCATATACTAAAGAGTGGA+AGG | - | chr5.2:68597586-68597605 | MS.gene32519:intron | 35.0% | |
| TGGATTGTGTAAACTTGTGA+AGG | - | chr5.2:68597448-68597467 | MS.gene32519:intron | 35.0% | |
| TGTGGGGTTGAAATTTGATT+AGG | + | chr5.2:68596503-68596522 | None:intergenic | 35.0% | |
| ! | ACGAAACCTGATAGTGAATT+TGG | - | chr5.2:68596555-68596574 | MS.gene32519:intron | 35.0% |
| ! | AGGGTTTGGGATTTATTGAA+AGG | + | chr5.2:68596483-68596502 | None:intergenic | 35.0% |
| ! | ATTTAAGGCATCCGTATGAT+TGG | - | chr5.2:68596880-68596899 | MS.gene32519:intron | 35.0% |
| ! | CGAAACCTGATAGTGAATTT+GGG | - | chr5.2:68596556-68596575 | MS.gene32519:intron | 35.0% |
| ! | GAAAATGGGTTTAAGGTTCT+AGG | + | chr5.2:68596432-68596451 | None:intergenic | 35.0% |
| ! | GTAAGGTGAAAATGGGTTTA+AGG | + | chr5.2:68596439-68596458 | None:intergenic | 35.0% |
| ! | GTGTGTAGTAGAAGAGATTT+TGG | - | chr5.2:68596600-68596619 | MS.gene32519:intron | 35.0% |
| ! | TATAGGTTGAAAAACCCTAG+GGG | - | chr5.2:68596759-68596778 | MS.gene32519:intron | 35.0% |
| ! | TTTTCATTAGGCATCCAAAG+TGG | - | chr5.2:68597111-68597130 | MS.gene32519:intron | 35.0% |
| !! | AAGAGATTTTGGGTGTTATG+CGG | - | chr5.2:68596611-68596630 | MS.gene32519:intron | 35.0% |
| !! | TTATCCCGATAATTTTTCGG+AGG | - | chr5.2:68596791-68596810 | MS.gene32519:intron | 35.0% |
| !!! | AAAGGCTTTTGTTGATGATG+TGG | - | chr5.2:68597478-68597497 | MS.gene32519:intron | 35.0% |
| !!! | TGGAAGGTAATGCTGATTTT+CGG | - | chr5.2:68596679-68596698 | MS.gene32519:intron | 35.0% |
| AAGTGAAGGATCATGAAGAG+TGG | - | chr5.2:68597003-68597022 | MS.gene32519:intron | 40.0% | |
| AATGGTGAGGTTTATGGAGA+AGG | - | chr5.2:68596848-68596867 | MS.gene32519:intron | 40.0% | |
| ACTATCAGGTTTCGTGTTTC+GGG | + | chr5.2:68596550-68596569 | None:intergenic | 40.0% | |
| AGATGGTAAATTCCATGCCA+TGG | - | chr5.2:68597853-68597872 | MS.gene32519:CDS | 40.0% | |
| AGTGAAGGATCATGAAGAGT+GGG | - | chr5.2:68597004-68597023 | MS.gene32519:intron | 40.0% | |
| ATGGACATTAGTTAGTGAGG+TGG | - | chr5.2:68597160-68597179 | MS.gene32519:intron | 40.0% | |
| ATTGAGGATGAAGGTAGTGA+CGG | - | chr5.2:68597701-68597720 | MS.gene32519:intron | 40.0% | |
| CACTATCAGGTTTCGTGTTT+CGG | + | chr5.2:68596551-68596570 | None:intergenic | 40.0% | |
| CGCTTGACATACACAATATC+AGG | + | chr5.2:68597287-68597306 | None:intergenic | 40.0% | |
| GACATGGAAGAAAGCAAAGA+TGG | - | chr5.2:68597836-68597855 | MS.gene32519:CDS | 40.0% | |
| GAGACGTGTACTTATTATGG+TGG | - | chr5.2:68597428-68597447 | MS.gene32519:intron | 40.0% | |
| GCAATGGACATTAGTTAGTG+AGG | - | chr5.2:68597157-68597176 | MS.gene32519:intron | 40.0% | |
| GCCTTCCACTCTTTAGTATA+TGG | + | chr5.2:68597590-68597609 | None:intergenic | 40.0% | |
| TAAAGAGTGGAAGGCTAAGT+TGG | - | chr5.2:68597595-68597614 | MS.gene32519:intron | 40.0% | |
| TATTGTGTATGTCAAGCGTC+CGG | - | chr5.2:68597289-68597308 | MS.gene32519:intron | 40.0% | |
| TGACGATGATGATCAAGAGA+TGG | - | chr5.2:68597754-68597773 | MS.gene32519:CDS | 40.0% | |
| TGATCGAATGGTGAGGTTTA+TGG | - | chr5.2:68596842-68596861 | MS.gene32519:intron | 40.0% | |
| TGCAGACCAAGATCTAGTTA+CGG | - | chr5.2:68597814-68597833 | MS.gene32519:CDS | 40.0% | |
| TGGGAAAAAAGTGAAGCAGT+TGG | - | chr5.2:68597061-68597080 | MS.gene32519:intron | 40.0% | |
| TTGGATATGATCGAATGGTG+AGG | - | chr5.2:68596835-68596854 | MS.gene32519:intron | 40.0% | |
| ! | ACTAGGCATGCAATTTTGGA+TGG | - | chr5.2:68598211-68598230 | MS.gene32519:CDS | 40.0% |
| ! | AGAAGAGTGGAAGTATGTTG+GGG | - | chr5.2:68598078-68598097 | MS.gene32519:CDS | 40.0% |
| ! | CAGAAGAGTGGAAGTATGTT+GGG | - | chr5.2:68598077-68598096 | MS.gene32519:CDS | 40.0% |
| ! | GCAATTTTGGATGGTGACAT+TGG | - | chr5.2:68598220-68598239 | MS.gene32519:CDS | 40.0% |
| ! | TGGTCTTGGATATGATCGAA+TGG | - | chr5.2:68596830-68596849 | MS.gene32519:intron | 40.0% |
| ! | TTTTGGATGGTGACATTGGT+AGG | - | chr5.2:68598224-68598243 | MS.gene32519:CDS | 40.0% |
| !! | AGAGATTTTGGGTGTTATGC+GGG | - | chr5.2:68596612-68596631 | MS.gene32519:intron | 40.0% |
| !! | GGAGACGAAACTGTTTTAAG+AGG | - | chr5.2:68598034-68598053 | MS.gene32519:CDS | 40.0% |
| !!! | CTGAAATGGCTGCTGATTTT+GGG | - | chr5.2:68597042-68597061 | MS.gene32519:intron | 40.0% |
| !!! | GTAATGCTGATTTTCGGAGA+CGG | - | chr5.2:68596685-68596704 | MS.gene32519:intron | 40.0% |
| !!! | TCTGAAATGGCTGCTGATTT+TGG | - | chr5.2:68597041-68597060 | MS.gene32519:intron | 40.0% |
| AAGTTGGAAGAGATGGAGCT+TGG | - | chr5.2:68597611-68597630 | MS.gene32519:intron | 45.0% | |
| ACAATCCCACGCCAAGAATA+CGG | + | chr5.2:68596927-68596946 | None:intergenic | 45.0% | |
| ACTAATGTCCATTGCTGCCA+CGG | + | chr5.2:68597152-68597171 | None:intergenic | 45.0% | |
| AGTTCCGAAACTCTCCACTT+TGG | + | chr5.2:68597128-68597147 | None:intergenic | 45.0% | |
| CCAACATACTTCCACTCTTC+TGG | + | chr5.2:68598079-68598098 | None:intergenic | 45.0% | |
| CCAAGATCTAGTTACGGACA+TGG | - | chr5.2:68597820-68597839 | MS.gene32519:CDS | 45.0% | |
| CCATGTCCGTAACTAGATCT+TGG | + | chr5.2:68597823-68597842 | None:intergenic | 45.0% | |
| CGATGATGATCAAGAGATGG+AGG | - | chr5.2:68597757-68597776 | MS.gene32519:CDS | 45.0% | |
| GAAACAACGCGTTCAGTAGA+CGG | - | chr5.2:68598013-68598032 | MS.gene32519:CDS | 45.0% | |
| GACGGTGATGCTGAATTTGA+TGG | - | chr5.2:68597719-68597738 | MS.gene32519:intron | 45.0% | |
| GCATCCAAAGTGGAGAGTTT+CGG | - | chr5.2:68597121-68597140 | MS.gene32519:intron | 45.0% | |
| GCCATGGAAGAAGATGTGAA+GGG | - | chr5.2:68597869-68597888 | MS.gene32519:CDS | 45.0% | |
| GTGAATATGGGCCGTATTCT+TGG | - | chr5.2:68596913-68596932 | MS.gene32519:intron | 45.0% | |
| TCAAACCTACACTGGAACAC+CGG | + | chr5.2:68597311-68597330 | None:intergenic | 45.0% | |
| TCACATCTTCTTCCATGGCA+TGG | + | chr5.2:68597868-68597887 | None:intergenic | 45.0% | |
| TCCATTTCTTGATCCTCGCA+CGG | - | chr5.2:68597361-68597380 | MS.gene32519:intron | 45.0% | |
| TCTTCTGGTGGTAGATTGGA+AGG | - | chr5.2:68596663-68596682 | MS.gene32519:intron | 45.0% | |
| TGATGATCAAGAGATGGAGG+AGG | - | chr5.2:68597760-68597779 | MS.gene32519:CDS | 45.0% | |
| TGCCATGGAAGAAGATGTGA+AGG | - | chr5.2:68597868-68597887 | MS.gene32519:CDS | 45.0% | |
| TTTAAGAGGAAAGCGAGCGA+AGG | - | chr5.2:68598048-68598067 | MS.gene32519:CDS | 45.0% | |
| ! | CCAGAAGAGTGGAAGTATGT+TGG | - | chr5.2:68598076-68598095 | MS.gene32519:CDS | 45.0% |
| ! | GAAGGCTAAGTTGGAAGAGA+TGG | - | chr5.2:68597604-68597623 | MS.gene32519:intron | 45.0% |
| ! | GGACTTTGATGGGTAGACTT+GGG | - | chr5.2:68597216-68597235 | MS.gene32519:intron | 45.0% |
| ! | TATTTCTGCGAGCAGCTGTT+CGG | - | chr5.2:68598149-68598168 | MS.gene32519:CDS | 45.0% |
| ! | TGGACTTTGATGGGTAGACT+TGG | - | chr5.2:68597215-68597234 | MS.gene32519:intron | 45.0% |
| !! | GAGGATTTGTTGCAGCAGAT+TGG | - | chr5.2:68596810-68596829 | MS.gene32519:intron | 45.0% |
| !! | TTGTTGCAGCAGATTGGTCT+TGG | - | chr5.2:68596816-68596835 | MS.gene32519:intron | 45.0% |
| AAATGATGACAGCGGAGGCA+GGG | - | chr5.2:68597987-68598006 | MS.gene32519:CDS | 50.0% | |
| AGAAGATGTGAAGGGCTGGA+AGG | - | chr5.2:68597877-68597896 | MS.gene32519:CDS | 50.0% | |
| AGGTAATCTTGTTCCGTGCG+AGG | + | chr5.2:68597377-68597396 | None:intergenic | 50.0% | |
| AGTGAGGTGGTACTTGAAGC+TGG | - | chr5.2:68597173-68597192 | MS.gene32519:intron | 50.0% | |
| CTTGTGGCTCAAACCTACAC+TGG | + | chr5.2:68597319-68597338 | None:intergenic | 50.0% | |
| GAAGCAAATGATGACAGCGG+AGG | - | chr5.2:68597982-68598001 | MS.gene32519:CDS | 50.0% | |
| GAAGGATCATGAAGAGTGGG+AGG | - | chr5.2:68597007-68597026 | MS.gene32519:intron | 50.0% | |
| GACGGATGAAACGTAATGCG+AGG | - | chr5.2:68596703-68596722 | MS.gene32519:intron | 50.0% | |
| GATAATTCCCACGTCCCCTA+GGG | + | chr5.2:68596776-68596795 | None:intergenic | 50.0% | |
| GATGGGTAGACTTGGGAACA+AGG | - | chr5.2:68597223-68597242 | MS.gene32519:intron | 50.0% | |
| GCCCTTCACATCTTCTTCCA+TGG | + | chr5.2:68597873-68597892 | None:intergenic | 50.0% | |
| GCTCGCAGAAATAGATCTGG+AGG | + | chr5.2:68598142-68598161 | None:intergenic | 50.0% | |
| GCTGCTCGCAGAAATAGATC+TGG | + | chr5.2:68598145-68598164 | None:intergenic | 50.0% | |
| GTCGTCTTCTGGTGGTAGAT+TGG | - | chr5.2:68596659-68596678 | MS.gene32519:intron | 50.0% | |
| TCCGTAATCCCACCACTAAC+CGG | + | chr5.2:68596960-68596979 | None:intergenic | 50.0% | |
| TCCGTGCGAGGATCAAGAAA+TGG | + | chr5.2:68597365-68597384 | None:intergenic | 50.0% | |
| TCTTGGCGTGGGATTGTTGT+TGG | - | chr5.2:68596930-68596949 | MS.gene32519:intron | 50.0% | |
| TGAAAAACCCTAGGGGACGT+GGG | - | chr5.2:68596766-68596785 | MS.gene32519:intron | 50.0% | |
| TGATCAAGAGATGGAGGAGG+AGG | - | chr5.2:68597763-68597782 | MS.gene32519:CDS | 50.0% | |
| TGCGGGTCGTAGTAAGAAGA+CGG | - | chr5.2:68596629-68596648 | MS.gene32519:intron | 50.0% | |
| TGGAAGAAGATGTGAAGGGC+TGG | - | chr5.2:68597873-68597892 | MS.gene32519:CDS | 50.0% | |
| TTGAAAAACCCTAGGGGACG+TGG | - | chr5.2:68596765-68596784 | MS.gene32519:intron | 50.0% | |
| ! | CGAAGGTTAGTCCAGAAGAG+TGG | - | chr5.2:68598065-68598084 | MS.gene32519:CDS | 50.0% |
| ! | GAGTGGAAGTATGTTGGGGT+CGG | - | chr5.2:68598082-68598101 | MS.gene32519:CDS | 50.0% |
| ! | TGGGATTGTTGTTGGTGAGC+CGG | - | chr5.2:68596938-68596957 | MS.gene32519:intron | 50.0% |
| AATGATGACAGCGGAGGCAG+GGG | - | chr5.2:68597988-68598007 | MS.gene32519:CDS | 55.0% | |
| AGAGATGGAGGAGGAGGATG+AGG | - | chr5.2:68597769-68597788 | MS.gene32519:CDS | 55.0% | |
| ATGGGCCGTATTCTTGGCGT+GGG | - | chr5.2:68596919-68596938 | MS.gene32519:intron | 55.0% | |
| CAAATGATGACAGCGGAGGC+AGG | - | chr5.2:68597986-68598005 | MS.gene32519:CDS | 55.0% | |
| GCGGGTCGTAGTAAGAAGAC+GGG | - | chr5.2:68596630-68596649 | MS.gene32519:intron | 55.0% | |
| GGAGAGTTTCGGAACTTCCG+TGG | - | chr5.2:68597132-68597151 | MS.gene32519:intron | 55.0% | |
| GGATAATTCCCACGTCCCCT+AGG | + | chr5.2:68596777-68596796 | None:intergenic | 55.0% | |
| GGTCGTAGTAAGAAGACGGG+TGG | - | chr5.2:68596633-68596652 | MS.gene32519:intron | 55.0% | |
| GTAGACTTGGGAACAAGGCG+AGG | - | chr5.2:68597228-68597247 | MS.gene32519:intron | 55.0% | |
| TATGGGCCGTATTCTTGGCG+TGG | - | chr5.2:68596918-68596937 | MS.gene32519:intron | 55.0% | |
| TTGGTGAGCCGGTTAGTGGT+GGG | - | chr5.2:68596949-68596968 | MS.gene32519:intron | 55.0% | |
| ! | GCCGGTTAGTGGTGGGATTA+CGG | - | chr5.2:68596956-68596975 | MS.gene32519:intron | 55.0% |
| ! | GTTGTTGGTGAGCCGGTTAG+TGG | - | chr5.2:68596945-68596964 | MS.gene32519:intron | 55.0% |
| AGCGTCCGGTGTTCCAGTGT+AGG | - | chr5.2:68597303-68597322 | MS.gene32519:intron | 60.0% | |
| AGTATGTTGGGGTCGGTCCG+TGG | - | chr5.2:68598089-68598108 | MS.gene32519:CDS | 60.0% | |
| CGGAACTTCCGTGGCAGCAA+TGG | - | chr5.2:68597141-68597160 | MS.gene32519:intron | 60.0% | |
| GAACAAGGCGAGGTCGTTGG+TGG | - | chr5.2:68597238-68597257 | MS.gene32519:intron | 60.0% | |
| TGGGAACAAGGCGAGGTCGT+TGG | - | chr5.2:68597235-68597254 | MS.gene32519:intron | 60.0% | |
| ! | GTTGGTGAGCCGGTTAGTGG+TGG | - | chr5.2:68596948-68596967 | MS.gene32519:intron | 60.0% |
| ACGGGTGGTGCGTCGTCTTC+TGG | - | chr5.2:68596648-68596667 | MS.gene32519:intron | 65.0% | |
| GGTGGTGCGTCGTCTTCTGG+TGG | - | chr5.2:68596651-68596670 | MS.gene32519:intron | 65.0% | |
| ! | TGGTGGCGCAATGTGCAGCG+TGG | - | chr5.2:68597255-68597274 | MS.gene32519:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 68596396 | 68598843 | 68596396 | ID=MS.gene32519 |
| chr5.2 | mRNA | 68596396 | 68598843 | 68596396 | ID=MS.gene32519.t1;Parent=MS.gene32519 |
| chr5.2 | exon | 68597740 | 68598843 | 68597740 | ID=MS.gene32519.t1.exon1;Parent=MS.gene32519.t1 |
| chr5.2 | CDS | 68597740 | 68598843 | 68597740 | ID=cds.MS.gene32519.t1;Parent=MS.gene32519.t1 |
| chr5.2 | exon | 68596396 | 68596419 | 68596396 | ID=MS.gene32519.t1.exon2;Parent=MS.gene32519.t1 |
| chr5.2 | CDS | 68596396 | 68596419 | 68596396 | ID=cds.MS.gene32519.t1;Parent=MS.gene32519.t1 |
| Gene Sequence |
| Protein sequence |
