Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33407.t1 | XP_024637728.1 | 93.3 | 553 | 26 | 3 | 32 | 576 | 49 | 598 | 5.60E-286 | 993 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33407.t1 | Q8H151 | 62.5 | 579 | 181 | 7 | 19 | 576 | 45 | 608 | 1.0e-195 | 684.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33407.t1 | A0A072UI68 | 91.0 | 545 | 13 | 1 | 32 | 576 | 49 | 557 | 2.1e-274 | 954.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049313 | MS.gene33407 | 0.812921 | 3.32E-51 | -1.69E-46 |
MS.gene052936 | MS.gene33407 | 0.828102 | 1.08E-54 | -1.69E-46 |
MS.gene052937 | MS.gene33407 | 0.936986 | 7.21E-98 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33407.t1 | MTR_4g013210 | 91.009 | 545 | 13 | 1 | 32 | 576 | 49 | 557 | 0.0 | 1004 |
MS.gene33407.t1 | MTR_4g013210 | 92.816 | 515 | 26 | 3 | 39 | 545 | 56 | 567 | 0.0 | 970 |
MS.gene33407.t1 | MTR_4g011790 | 82.084 | 547 | 82 | 5 | 38 | 576 | 61 | 599 | 0.0 | 910 |
MS.gene33407.t1 | MTR_4g011790 | 80.686 | 554 | 86 | 4 | 38 | 576 | 61 | 608 | 0.0 | 909 |
MS.gene33407.t1 | MTR_4g011790 | 82.430 | 535 | 78 | 5 | 38 | 564 | 61 | 587 | 0.0 | 895 |
MS.gene33407.t1 | MTR_4g013210 | 91.796 | 451 | 22 | 3 | 136 | 576 | 1 | 446 | 0.0 | 840 |
MS.gene33407.t1 | MTR_4g013210 | 89.625 | 453 | 11 | 1 | 32 | 484 | 49 | 465 | 0.0 | 820 |
MS.gene33407.t1 | MTR_4g013210 | 89.342 | 441 | 11 | 1 | 136 | 576 | 1 | 405 | 0.0 | 798 |
MS.gene33407.t1 | MTR_4g013210 | 91.022 | 401 | 21 | 3 | 39 | 429 | 56 | 451 | 0.0 | 739 |
MS.gene33407.t1 | MTR_3g035130 | 26.966 | 534 | 333 | 18 | 55 | 575 | 25 | 514 | 6.50e-43 | 161 |
MS.gene33407.t1 | MTR_3g035130 | 27.079 | 469 | 295 | 16 | 55 | 510 | 25 | 459 | 4.14e-34 | 135 |
MS.gene33407.t1 | MTR_4g057730 | 28.000 | 375 | 230 | 11 | 205 | 568 | 189 | 534 | 4.04e-31 | 127 |
MS.gene33407.t1 | MTR_4g077900 | 27.649 | 387 | 236 | 13 | 204 | 575 | 120 | 477 | 6.03e-31 | 126 |
MS.gene33407.t1 | MTR_5g027500 | 27.806 | 392 | 229 | 11 | 204 | 575 | 210 | 567 | 1.68e-30 | 126 |
MS.gene33407.t1 | MTR_1g026310 | 27.551 | 392 | 237 | 14 | 200 | 575 | 199 | 559 | 1.49e-29 | 123 |
MS.gene33407.t1 | MTR_1569s0010 | 24.528 | 530 | 308 | 18 | 89 | 569 | 42 | 528 | 1.92e-29 | 122 |
MS.gene33407.t1 | MTR_1g063120 | 26.203 | 374 | 248 | 11 | 202 | 568 | 192 | 544 | 6.62e-29 | 121 |
MS.gene33407.t1 | MTR_1g063110 | 25.253 | 396 | 262 | 12 | 180 | 568 | 172 | 540 | 1.49e-28 | 120 |
MS.gene33407.t1 | MTR_4g128337 | 24.909 | 550 | 336 | 21 | 48 | 568 | 39 | 540 | 5.42e-28 | 118 |
MS.gene33407.t1 | MTR_0803s0020 | 23.366 | 505 | 325 | 14 | 93 | 576 | 285 | 748 | 7.76e-28 | 119 |
MS.gene33407.t1 | MTR_2g105570 | 23.933 | 539 | 340 | 19 | 63 | 574 | 52 | 547 | 1.70e-27 | 117 |
MS.gene33407.t1 | MTR_5g027480 | 27.249 | 389 | 235 | 13 | 204 | 575 | 197 | 554 | 3.87e-27 | 115 |
MS.gene33407.t1 | MTR_2g095510 | 25.700 | 393 | 228 | 12 | 199 | 568 | 180 | 531 | 4.23e-27 | 115 |
MS.gene33407.t1 | MTR_7g084850 | 26.010 | 396 | 243 | 17 | 203 | 576 | 356 | 723 | 5.98e-27 | 116 |
MS.gene33407.t1 | MTR_8g039720 | 26.562 | 384 | 238 | 11 | 204 | 575 | 207 | 558 | 4.47e-26 | 112 |
MS.gene33407.t1 | MTR_4g005750 | 23.640 | 533 | 339 | 19 | 65 | 574 | 53 | 540 | 1.16e-25 | 111 |
MS.gene33407.t1 | MTR_3g088880 | 23.600 | 500 | 317 | 14 | 90 | 571 | 99 | 551 | 1.19e-25 | 111 |
MS.gene33407.t1 | MTR_5g007640 | 23.604 | 555 | 345 | 21 | 49 | 574 | 81 | 585 | 1.94e-25 | 110 |
MS.gene33407.t1 | MTR_3g064420 | 26.316 | 399 | 219 | 15 | 206 | 569 | 189 | 547 | 4.05e-25 | 110 |
MS.gene33407.t1 | MTR_1g104810 | 27.976 | 336 | 185 | 7 | 204 | 495 | 258 | 580 | 4.20e-25 | 110 |
MS.gene33407.t1 | MTR_2g030240 | 26.173 | 405 | 236 | 16 | 207 | 575 | 75 | 452 | 4.33e-25 | 108 |
MS.gene33407.t1 | MTR_1g104810 | 27.976 | 336 | 185 | 7 | 204 | 495 | 191 | 513 | 4.67e-25 | 110 |
MS.gene33407.t1 | MTR_2g030240 | 26.173 | 405 | 236 | 16 | 207 | 575 | 169 | 546 | 8.52e-25 | 108 |
MS.gene33407.t1 | MTR_1g073180 | 26.087 | 391 | 233 | 15 | 200 | 572 | 179 | 531 | 8.69e-25 | 108 |
MS.gene33407.t1 | MTR_3g088870 | 25.189 | 397 | 241 | 13 | 196 | 571 | 192 | 553 | 4.70e-24 | 106 |
MS.gene33407.t1 | MTR_1g090737 | 26.579 | 380 | 230 | 12 | 205 | 568 | 212 | 558 | 1.81e-22 | 101 |
MS.gene33407.t1 | MTR_5g076220 | 26.010 | 396 | 231 | 14 | 202 | 571 | 185 | 544 | 2.54e-22 | 101 |
MS.gene33407.t1 | MTR_5g076200 | 25.815 | 399 | 228 | 12 | 202 | 571 | 185 | 544 | 2.61e-22 | 101 |
MS.gene33407.t1 | MTR_5g076240 | 26.764 | 411 | 230 | 14 | 191 | 571 | 174 | 543 | 5.97e-22 | 100 |
MS.gene33407.t1 | MTR_0161s0050 | 25.575 | 391 | 233 | 15 | 205 | 571 | 190 | 546 | 4.98e-21 | 97.4 |
MS.gene33407.t1 | MTR_4g057730 | 26.910 | 301 | 190 | 9 | 205 | 494 | 189 | 470 | 8.10e-21 | 96.3 |
MS.gene33407.t1 | MTR_3g460770 | 23.947 | 380 | 248 | 11 | 204 | 570 | 184 | 535 | 6.44e-20 | 94.0 |
MS.gene33407.t1 | MTR_8g035620 | 23.379 | 509 | 321 | 18 | 96 | 568 | 146 | 621 | 2.20e-19 | 93.2 |
MS.gene33407.t1 | MTR_8g074040 | 25.743 | 404 | 219 | 16 | 201 | 570 | 104 | 460 | 2.75e-18 | 88.6 |
MS.gene33407.t1 | MTR_1g073180 | 25.414 | 362 | 215 | 14 | 200 | 544 | 201 | 524 | 3.74e-18 | 88.2 |
MS.gene33407.t1 | MTR_8g074040 | 25.743 | 404 | 219 | 16 | 201 | 570 | 222 | 578 | 3.92e-18 | 88.6 |
MS.gene33407.t1 | MTR_1g034360 | 22.642 | 477 | 297 | 14 | 93 | 512 | 103 | 564 | 1.07e-17 | 87.0 |
MS.gene33407.t1 | MTR_5g008800 | 27.342 | 395 | 216 | 17 | 205 | 570 | 182 | 534 | 1.08e-17 | 87.0 |
MS.gene33407.t1 | MTR_2g044180 | 23.160 | 557 | 326 | 22 | 65 | 569 | 46 | 552 | 1.58e-17 | 86.3 |
MS.gene33407.t1 | MTR_1054s0020 | 29.818 | 275 | 173 | 7 | 306 | 570 | 502 | 766 | 1.66e-17 | 86.7 |
MS.gene33407.t1 | MTR_8g074120 | 24.250 | 400 | 230 | 15 | 201 | 570 | 133 | 489 | 5.40e-17 | 84.3 |
MS.gene33407.t1 | MTR_5g009350 | 22.874 | 494 | 309 | 16 | 83 | 517 | 92 | 572 | 7.64e-17 | 84.3 |
MS.gene33407.t1 | MTR_2g044180 | 26.873 | 387 | 220 | 18 | 211 | 569 | 110 | 461 | 1.27e-16 | 83.2 |
MS.gene33407.t1 | MTR_4g057730 | 27.113 | 284 | 177 | 9 | 205 | 477 | 189 | 453 | 1.68e-16 | 82.8 |
MS.gene33407.t1 | MTR_4g121600 | 21.898 | 548 | 348 | 20 | 63 | 569 | 44 | 552 | 2.64e-16 | 82.4 |
MS.gene33407.t1 | MTR_5g009350 | 22.904 | 489 | 296 | 16 | 83 | 502 | 92 | 568 | 7.77e-16 | 81.3 |
MS.gene33407.t1 | MTR_5g009350 | 23.093 | 472 | 292 | 15 | 83 | 495 | 92 | 551 | 1.24e-15 | 80.5 |
MS.gene33407.t1 | MTR_5g009350 | 23.093 | 472 | 292 | 15 | 83 | 495 | 92 | 551 | 1.25e-15 | 80.5 |
MS.gene33407.t1 | MTR_7g109830 | 21.965 | 519 | 312 | 14 | 66 | 518 | 78 | 569 | 4.28e-15 | 79.0 |
MS.gene33407.t1 | MTR_1g030290 | 21.499 | 507 | 318 | 13 | 95 | 534 | 134 | 627 | 6.38e-15 | 78.6 |
MS.gene33407.t1 | MTR_5g008820 | 30.818 | 159 | 97 | 5 | 411 | 569 | 386 | 531 | 2.32e-13 | 73.2 |
MS.gene33407.t1 | MTR_3g084470 | 25.000 | 268 | 156 | 10 | 338 | 573 | 450 | 704 | 5.60e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33407.t1 | AT3G16170 | 62.522 | 579 | 181 | 7 | 19 | 576 | 45 | 608 | 0.0 | 720 |
MS.gene33407.t1 | AT3G48990 | 27.345 | 501 | 311 | 14 | 78 | 566 | 45 | 504 | 9.98e-51 | 182 |
MS.gene33407.t1 | AT4G19010 | 27.968 | 379 | 241 | 11 | 205 | 574 | 205 | 560 | 3.79e-36 | 142 |
MS.gene33407.t1 | AT1G20510 | 28.244 | 393 | 230 | 12 | 200 | 574 | 184 | 542 | 3.86e-35 | 139 |
MS.gene33407.t1 | AT1G20480 | 24.283 | 593 | 362 | 19 | 16 | 575 | 26 | 564 | 1.33e-32 | 132 |
MS.gene33407.t1 | AT1G20500 | 27.720 | 386 | 241 | 12 | 200 | 575 | 192 | 549 | 3.62e-30 | 125 |
MS.gene33407.t1 | AT5G38120 | 28.756 | 386 | 224 | 13 | 205 | 575 | 200 | 549 | 6.43e-30 | 124 |
MS.gene33407.t1 | AT4G05160 | 26.234 | 385 | 236 | 12 | 199 | 568 | 185 | 536 | 6.67e-30 | 124 |
MS.gene33407.t1 | AT1G30520 | 27.913 | 412 | 242 | 15 | 196 | 575 | 164 | 552 | 8.42e-30 | 124 |
MS.gene33407.t1 | AT1G30520 | 27.913 | 412 | 242 | 15 | 196 | 575 | 164 | 552 | 8.42e-30 | 124 |
MS.gene33407.t1 | AT1G65060 | 24.030 | 541 | 328 | 18 | 63 | 573 | 74 | 561 | 2.67e-29 | 122 |
MS.gene33407.t1 | AT5G36880 | 27.500 | 400 | 232 | 18 | 203 | 576 | 301 | 668 | 9.15e-29 | 121 |
MS.gene33407.t1 | AT5G36880 | 27.500 | 400 | 232 | 18 | 203 | 576 | 301 | 668 | 9.15e-29 | 121 |
MS.gene33407.t1 | AT5G36880 | 27.500 | 400 | 232 | 18 | 203 | 576 | 301 | 668 | 9.15e-29 | 121 |
MS.gene33407.t1 | AT5G36880 | 27.500 | 400 | 232 | 18 | 203 | 576 | 301 | 668 | 9.15e-29 | 121 |
MS.gene33407.t1 | AT5G36880 | 27.500 | 400 | 232 | 18 | 203 | 576 | 351 | 718 | 1.01e-28 | 122 |
MS.gene33407.t1 | AT3G21240 | 26.904 | 394 | 233 | 15 | 202 | 574 | 193 | 552 | 3.22e-28 | 119 |
MS.gene33407.t1 | AT1G68270 | 25.806 | 372 | 242 | 7 | 201 | 571 | 183 | 521 | 9.04e-28 | 117 |
MS.gene33407.t1 | AT5G63380 | 25.765 | 392 | 235 | 14 | 199 | 571 | 199 | 553 | 3.63e-25 | 110 |
MS.gene33407.t1 | AT1G20510 | 27.476 | 313 | 185 | 10 | 200 | 494 | 184 | 472 | 3.76e-25 | 109 |
MS.gene33407.t1 | AT1G65890 | 25.124 | 402 | 237 | 11 | 201 | 571 | 183 | 551 | 4.17e-25 | 110 |
MS.gene33407.t1 | AT1G77240 | 25.822 | 426 | 235 | 16 | 191 | 574 | 157 | 543 | 8.21e-25 | 108 |
MS.gene33407.t1 | AT5G38120 | 28.916 | 332 | 193 | 12 | 205 | 519 | 200 | 505 | 1.60e-24 | 107 |
MS.gene33407.t1 | AT5G36880 | 28.173 | 323 | 182 | 15 | 203 | 499 | 301 | 599 | 1.76e-24 | 108 |
MS.gene33407.t1 | AT1G21540 | 25.000 | 392 | 239 | 10 | 206 | 574 | 189 | 548 | 3.58e-24 | 107 |
MS.gene33407.t1 | AT1G66120 | 27.431 | 401 | 222 | 14 | 201 | 571 | 183 | 544 | 5.58e-24 | 106 |
MS.gene33407.t1 | AT1G51680 | 24.747 | 396 | 251 | 12 | 196 | 574 | 194 | 559 | 7.42e-24 | 106 |
MS.gene33407.t1 | AT1G65880 | 25.310 | 403 | 236 | 12 | 201 | 571 | 183 | 552 | 8.72e-24 | 105 |
MS.gene33407.t1 | AT1G49430 | 23.853 | 545 | 331 | 17 | 31 | 512 | 44 | 567 | 1.29e-23 | 105 |
MS.gene33407.t1 | AT1G21530 | 25.765 | 392 | 230 | 12 | 206 | 571 | 186 | 542 | 1.65e-23 | 105 |
MS.gene33407.t1 | AT1G21530 | 24.422 | 389 | 241 | 10 | 206 | 571 | 186 | 544 | 2.41e-23 | 104 |
MS.gene33407.t1 | AT5G16340 | 29.703 | 404 | 204 | 18 | 202 | 571 | 183 | 540 | 4.20e-22 | 100 |
MS.gene33407.t1 | AT3G21230 | 24.808 | 391 | 234 | 14 | 202 | 569 | 208 | 561 | 4.47e-22 | 100 |
MS.gene33407.t1 | AT5G27600 | 28.443 | 334 | 186 | 8 | 204 | 495 | 261 | 583 | 1.31e-21 | 99.8 |
MS.gene33407.t1 | AT3G05970 | 28.571 | 336 | 183 | 8 | 204 | 495 | 261 | 583 | 1.73e-21 | 99.4 |
MS.gene33407.t1 | AT5G38120 | 28.758 | 306 | 177 | 11 | 204 | 494 | 199 | 478 | 2.05e-21 | 98.2 |
MS.gene33407.t1 | AT5G38120 | 28.758 | 306 | 177 | 11 | 204 | 494 | 199 | 478 | 2.05e-21 | 98.2 |
MS.gene33407.t1 | AT1G49430 | 24.375 | 480 | 282 | 15 | 31 | 447 | 44 | 505 | 7.40e-21 | 96.7 |
MS.gene33407.t1 | AT1G62940 | 27.062 | 388 | 221 | 14 | 211 | 573 | 188 | 538 | 8.28e-21 | 96.7 |
MS.gene33407.t1 | AT1G65060 | 23.982 | 442 | 263 | 14 | 63 | 474 | 74 | 472 | 1.65e-20 | 95.5 |
MS.gene33407.t1 | AT5G16370 | 27.635 | 427 | 242 | 19 | 171 | 571 | 155 | 540 | 2.01e-20 | 95.5 |
MS.gene33407.t1 | AT1G20510 | 27.740 | 292 | 169 | 10 | 200 | 473 | 184 | 451 | 4.71e-20 | 94.0 |
MS.gene33407.t1 | AT1G75960 | 26.933 | 401 | 220 | 16 | 202 | 571 | 182 | 540 | 5.52e-20 | 94.0 |
MS.gene33407.t1 | AT1G51680 | 24.490 | 343 | 222 | 10 | 196 | 521 | 194 | 516 | 1.62e-19 | 92.4 |
MS.gene33407.t1 | AT2G17650 | 27.250 | 400 | 219 | 17 | 201 | 570 | 238 | 595 | 6.22e-19 | 90.9 |
MS.gene33407.t1 | AT1G20560 | 24.082 | 490 | 307 | 17 | 111 | 569 | 6 | 461 | 2.16e-18 | 88.6 |
MS.gene33407.t1 | AT3G21230 | 26.100 | 341 | 196 | 13 | 202 | 519 | 208 | 515 | 2.38e-18 | 89.0 |
MS.gene33407.t1 | AT3G16910 | 22.420 | 562 | 329 | 20 | 63 | 569 | 46 | 555 | 1.52e-17 | 86.7 |
MS.gene33407.t1 | AT1G20560 | 36.478 | 159 | 88 | 5 | 411 | 569 | 394 | 539 | 1.54e-17 | 86.7 |
MS.gene33407.t1 | AT1G64400 | 22.470 | 494 | 297 | 15 | 83 | 511 | 93 | 565 | 1.63e-17 | 86.7 |
MS.gene33407.t1 | AT3G21230 | 25.949 | 316 | 184 | 12 | 202 | 494 | 208 | 496 | 2.08e-17 | 85.9 |
MS.gene33407.t1 | AT1G30520 | 28.053 | 303 | 167 | 12 | 196 | 470 | 164 | 443 | 3.43e-17 | 85.1 |
MS.gene33407.t1 | AT1G30520 | 28.053 | 303 | 167 | 12 | 196 | 470 | 164 | 443 | 3.43e-17 | 85.1 |
MS.gene33407.t1 | AT1G51680 | 24.606 | 317 | 202 | 10 | 196 | 495 | 194 | 490 | 1.36e-16 | 83.2 |
MS.gene33407.t1 | AT3G23790 | 23.583 | 547 | 303 | 21 | 64 | 514 | 110 | 637 | 1.47e-16 | 84.0 |
MS.gene33407.t1 | AT4G14070 | 27.189 | 217 | 136 | 6 | 338 | 538 | 471 | 681 | 1.67e-12 | 70.9 |
MS.gene33407.t1 | AT1G20490 | 26.103 | 272 | 166 | 11 | 200 | 457 | 194 | 444 | 8.15e-12 | 68.2 |
MS.gene33407.t1 | AT1G20490 | 26.103 | 272 | 166 | 11 | 200 | 457 | 194 | 444 | 8.15e-12 | 68.2 |
MS.gene33407.t1 | AT5G35930 | 22.414 | 522 | 308 | 21 | 96 | 571 | 97 | 567 | 5.80e-11 | 66.2 |
MS.gene33407.t1 | AT5G35930 | 22.414 | 522 | 308 | 21 | 96 | 571 | 5 | 475 | 6.27e-11 | 65.9 |
Find 130 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTCCATCTTCTTCATTTA+TGG | 0.135801 | 4.2:-87415378 | MS.gene33407:CDS |
GCTCTTCTCTAACGACTTAT+TGG | 0.194762 | 4.2:+87413694 | None:intergenic |
CATCATTGTTTAAAGAATAT+TGG | 0.213595 | 4.2:-87411486 | MS.gene33407:CDS |
ATTCCGCTGACACTAAATTT+TGG | 0.236074 | 4.2:+87412733 | None:intergenic |
AATTTAGTGTCAGCGGAATT+TGG | 0.256272 | 4.2:-87412729 | MS.gene33407:CDS |
GCTTCCCATTCTTGCATAAC+AGG | 0.262858 | 4.2:+87412010 | None:intergenic |
CACGGTAACCTTGTATTAAT+CGG | 0.269004 | 4.2:+87412357 | None:intergenic |
CCCAAGTGGATAACTCTTCT+AGG | 0.269417 | 4.2:+87409673 | None:intergenic |
TATCACTGGCCATCGTTTAT+TGG | 0.273179 | 4.2:-87411987 | MS.gene33407:CDS |
GTAAGGTGCAAGTTTATCTT+TGG | 0.297335 | 4.2:+87409650 | None:intergenic |
GCATTGTCAAATCCATTAAA+AGG | 0.298576 | 4.2:-87411848 | MS.gene33407:CDS |
GAATTTGTTGCTGCTGTACT+TGG | 0.306477 | 4.2:-87414244 | MS.gene33407:CDS |
TACCAACTCGTCTGATCCTT+TGG | 0.314071 | 4.2:-87408564 | MS.gene33407:CDS |
TTGATCTTTCAATGGTTTCC+AGG | 0.320902 | 4.2:+87413624 | None:intergenic |
CATCGTTTATTGGAGCGATA+TGG | 0.337894 | 4.2:-87411977 | MS.gene33407:CDS |
AACAAATTCAGCAGAGGGTT+TGG | 0.342190 | 4.2:+87414258 | None:intergenic |
GTCTCAGAATGTTGTGTCTT+GGG | 0.343760 | 4.2:-87409795 | MS.gene33407:CDS |
GGCTTACCACACAAAGAATA+TGG | 0.348017 | 4.2:-87409774 | MS.gene33407:CDS |
GATGGATATTACATCATTCT+AGG | 0.360406 | 4.2:-87410377 | MS.gene33407:CDS |
CAATATTCTTTAAACAATGA+TGG | 0.361902 | 4.2:+87411487 | None:intergenic |
CTCAACCTGTTATGCAAGAA+TGG | 0.387119 | 4.2:-87412015 | MS.gene33407:CDS |
TTGCTGCTGTACTTGGGACT+TGG | 0.387636 | 4.2:-87414237 | MS.gene33407:CDS |
TATTTCCATGTAGGTAACTA+AGG | 0.390753 | 4.2:-87410456 | MS.gene33407:intron |
TTACATGCAAATTATTTCTT+CGG | 0.391512 | 4.2:-87415276 | MS.gene33407:CDS |
AAGGAATCATTTACGGAAGA+AGG | 0.399018 | 4.2:-87410437 | MS.gene33407:CDS |
GAATCTCATTGTATTGTTGA+AGG | 0.399613 | 4.2:-87412767 | MS.gene33407:CDS |
ATATCCAACTGAAGGATCTA+AGG | 0.400947 | 4.2:-87412689 | MS.gene33407:CDS |
GTACTTGGGACTTGGCTTAG+TGG | 0.407283 | 4.2:-87414229 | MS.gene33407:CDS |
GGTAACTAAGGAATCATTTA+CGG | 0.408234 | 4.2:-87410444 | MS.gene33407:CDS |
TTTCGTTTAACATCAGCTTC+TGG | 0.417769 | 4.2:+87409726 | None:intergenic |
TGCAAGGAACTTGCGTCTAA+TGG | 0.425487 | 4.2:-87412297 | MS.gene33407:intron |
ACCAAAACCTAGGGAAATCT+TGG | 0.427393 | 4.2:-87414304 | MS.gene33407:intron |
TGTCTCAGAATGTTGTGTCT+TGG | 0.427969 | 4.2:-87409796 | MS.gene33407:CDS |
CCTGTATGTGATGAATAATT+CGG | 0.428694 | 4.2:-87414161 | MS.gene33407:intron |
TATCATACTTGATCTTTCAA+TGG | 0.428840 | 4.2:+87413616 | None:intergenic |
AAAGAATATGGAGAAATTGT+TGG | 0.453282 | 4.2:-87409762 | MS.gene33407:CDS |
CCATGTCACCATACCTTGTA+AGG | 0.457324 | 4.2:+87409633 | None:intergenic |
ATCTGTTGTAACTGCATCTC+CGG | 0.459657 | 4.2:+87410403 | None:intergenic |
ATTAATCGGGCATACATAGT+TGG | 0.466685 | 4.2:+87412371 | None:intergenic |
TCTAACGACTTATTGGCAAC+AGG | 0.467126 | 4.2:+87413701 | None:intergenic |
TTGTACACTAGCGGAACAAC+AGG | 0.468770 | 4.2:-87413473 | MS.gene33407:CDS |
AATATTCTTTAAACAATGAT+GGG | 0.471095 | 4.2:+87411488 | None:intergenic |
CTTCATGATGAGTATCTACT+AGG | 0.471821 | 4.2:-87418379 | MS.gene33407:intron |
ACATACAGGAGCTCTACTTC+TGG | 0.472249 | 4.2:+87414175 | None:intergenic |
CTAACCTGCACTCCGGGTAA+TGG | 0.477390 | 4.2:+87411797 | None:intergenic |
ACGGTAACCTTGTATTAATC+GGG | 0.478750 | 4.2:+87412358 | None:intergenic |
ACCAACTCGTCTGATCCTTT+GGG | 0.478839 | 4.2:-87408563 | MS.gene33407:CDS |
TGTGTATGAACAACTCCCTT+AGG | 0.479091 | 4.2:+87413446 | None:intergenic |
AGATAAACTTGCACCTTACA+AGG | 0.483125 | 4.2:-87409646 | MS.gene33407:intron |
CTTTCTCTTAGGTCAAGATC+CGG | 0.483958 | 4.2:-87413504 | MS.gene33407:intron |
TCACTCCCTCGCAATGCAAT+GGG | 0.485005 | 4.2:-87408538 | MS.gene33407:CDS |
AATCGAATCAGTTATAATAG+AGG | 0.487731 | 4.2:-87409942 | MS.gene33407:intron |
GAGCGTAAGGCAGGCACAGT+TGG | 0.488137 | 4.2:-87411824 | MS.gene33407:CDS |
CATTCTTGCATAACAGGTTG+AGG | 0.493045 | 4.2:+87412016 | None:intergenic |
GAAGAAGGTTTCTTTAAGAC+CGG | 0.495029 | 4.2:-87410422 | MS.gene33407:CDS |
GCTGACACAGCTTGTAGCTC+AGG | 0.495695 | 4.2:+87412326 | None:intergenic |
GATGCTATAACTGTATTCAC+TGG | 0.503554 | 4.2:-87412661 | MS.gene33407:CDS |
ATCAATGTTCTAGTTTGTCA+TGG | 0.503981 | 4.2:-87411870 | MS.gene33407:intron |
CCGAATTATTCATCACATAC+AGG | 0.507169 | 4.2:+87414161 | None:intergenic |
CATCAACTAACCTGCACTCC+GGG | 0.507644 | 4.2:+87411791 | None:intergenic |
TCAACCTGTTATGCAAGAAT+GGG | 0.508086 | 4.2:-87412014 | MS.gene33407:CDS |
CTCACTCCCTCGCAATGCAA+TGG | 0.508145 | 4.2:-87408539 | MS.gene33407:CDS |
AATTTGTTGCTGCTGTACTT+GGG | 0.510580 | 4.2:-87414243 | MS.gene33407:CDS |
TTGAAGTAGAAGAAATGAAA+AGG | 0.512360 | 4.2:-87418465 | None:intergenic |
CTCTGATAGCAACATTTCCA+TGG | 0.513615 | 4.2:+87415318 | None:intergenic |
AAAACCATTACCCGGAGTGC+AGG | 0.524416 | 4.2:-87411801 | MS.gene33407:intron |
TTAAAAGGTGAGCGTAAGGC+AGG | 0.525924 | 4.2:-87411833 | MS.gene33407:CDS |
TATTGGCAACAGGTGGAAGA+TGG | 0.526160 | 4.2:+87413711 | None:intergenic |
AAGATATCTAATCTCTTATG+TGG | 0.526973 | 4.2:-87415248 | MS.gene33407:CDS |
CGGAACAACAGGTAAACCTA+AGG | 0.528875 | 4.2:-87413462 | MS.gene33407:CDS |
AACTCTTCTAGGCTTAGAGC+CGG | 0.531743 | 4.2:+87409684 | None:intergenic |
GCAGTTACAACAGATAAAGA+TGG | 0.535005 | 4.2:-87410395 | MS.gene33407:CDS |
TCCATTAAAAGGTGAGCGTA+AGG | 0.537596 | 4.2:-87411837 | MS.gene33407:CDS |
ACCTCCATAAATGAAGAAGA+TGG | 0.538825 | 4.2:+87415374 | None:intergenic |
AAGCAAGACCTTGCATCCCA+TGG | 0.541759 | 4.2:-87415335 | MS.gene33407:CDS |
ACACAACATTCTGAGACAGC+TGG | 0.542670 | 4.2:+87409801 | None:intergenic |
TCCATCTTCTTCATTTATGG+AGG | 0.548029 | 4.2:-87415375 | MS.gene33407:CDS |
CAACATTTCCATGGGATGCA+AGG | 0.549065 | 4.2:+87415327 | None:intergenic |
AATCTTGGTGGAGCTCGAAT+CGG | 0.550544 | 4.2:-87414289 | MS.gene33407:CDS |
CATGCTATTATTCAGATGTG+TGG | 0.551989 | 4.2:-87412052 | MS.gene33407:intron |
GAATACAGTTATAGCATCAT+CGG | 0.552682 | 4.2:+87412666 | None:intergenic |
TCGGCCTTAGATCCTTCAGT+TGG | 0.554813 | 4.2:+87412685 | None:intergenic |
ATTTCTCCATATTCTTTGTG+TGG | 0.557741 | 4.2:+87409768 | None:intergenic |
CAAGAATGGGAAGCTATCAC+TGG | 0.557923 | 4.2:-87412001 | MS.gene33407:CDS |
AAAACCTAGGGAAATCTTGG+TGG | 0.558124 | 4.2:-87414301 | MS.gene33407:intron |
TCAGCGGAATTTGGAAGAGA+TGG | 0.559886 | 4.2:-87412720 | MS.gene33407:CDS |
ATGCTATTATTCAGATGTGT+GGG | 0.560738 | 4.2:-87412051 | MS.gene33407:intron |
ACCTTTCCCATTGCATTGCG+AGG | 0.560840 | 4.2:+87408532 | None:intergenic |
TTGCCAAAATTTAGTGTCAG+CGG | 0.562865 | 4.2:-87412736 | MS.gene33407:CDS |
CCTTTCCCATTGCATTGCGA+GGG | 0.563073 | 4.2:+87408533 | None:intergenic |
ACACGGAAGCATCATTGCTC+AGG | 0.564348 | 4.2:-87413426 | MS.gene33407:intron |
AATACAAGGTTACCGTGCAA+TGG | 0.566321 | 4.2:-87412351 | MS.gene33407:CDS |
GGTCAAGATTCTTGCAGATG+AGG | 0.566623 | 4.2:-87411557 | MS.gene33407:CDS |
TCTGGATAGCTGACTGCAAG+TGG | 0.569089 | 4.2:+87414193 | None:intergenic |
CCCTCGCAATGCAATGGGAA+AGG | 0.573456 | 4.2:-87408533 | MS.gene33407:intron |
ACAACTCAGTTTGTCTCCAA+AGG | 0.578507 | 4.2:-87418427 | MS.gene33407:CDS |
CTAGTGTACAAAATGAGTGC+CGG | 0.578770 | 4.2:+87413485 | None:intergenic |
CTGTGTCAGCATCTGCTGCA+AGG | 0.579150 | 4.2:-87412313 | MS.gene33407:CDS |
TGCAGACAGCTTATAGCCAC+CGG | 0.580145 | 4.2:+87409970 | None:intergenic |
TACTAGTGCGGACATCATCA+AGG | 0.581799 | 4.2:-87409993 | MS.gene33407:CDS |
GCAAGATGAAGAGTCAAAGC+CGG | 0.583000 | 4.2:-87409703 | MS.gene33407:CDS |
AGAGATGAACATTCACAGAA+TGG | 0.588910 | 4.2:-87413671 | MS.gene33407:CDS |
GCCTAGAAGAGTTATCCACT+TGG | 0.591146 | 4.2:-87409674 | MS.gene33407:CDS |
TTCTTGCAGATGAGGAGCGT+GGG | 0.594041 | 4.2:-87411549 | MS.gene33407:CDS |
TCCCAAAGGATCAGACGAGT+TGG | 0.594683 | 4.2:+87408562 | None:intergenic |
ACATCAACTAACCTGCACTC+CGG | 0.602640 | 4.2:+87411790 | None:intergenic |
AAGTTTATCTTTGGCCCAAG+TGG | 0.603463 | 4.2:+87409659 | None:intergenic |
GCAGCAACAAATTCAGCAGA+GGG | 0.603569 | 4.2:+87414253 | None:intergenic |
TCCAATCCTTGACAAAAGCG+TGG | 0.604797 | 4.2:-87413136 | MS.gene33407:CDS |
CGTGAGTCATATCCAACTGA+AGG | 0.605168 | 4.2:-87412697 | MS.gene33407:CDS |
TGCGAGGGAGTGAGTCCCAA+AGG | 0.606925 | 4.2:+87408548 | None:intergenic |
TCTGATAGCAACATTTCCAT+GGG | 0.607586 | 4.2:+87415319 | None:intergenic |
AGTGCGGACATCATCAAGGC+CGG | 0.613064 | 4.2:-87409989 | MS.gene33407:CDS |
CCAATCCTTGACAAAAGCGT+GGG | 0.616229 | 4.2:-87413135 | MS.gene33407:CDS |
CTTGGGACTTGGCTTAGTGG+TGG | 0.616590 | 4.2:-87414226 | MS.gene33407:CDS |
ATGTATGCCCGATTAATACA+AGG | 0.621258 | 4.2:-87412365 | MS.gene33407:CDS |
ATTCTTGCAGATGAGGAGCG+TGG | 0.628922 | 4.2:-87411550 | MS.gene33407:CDS |
GGAACAACAGGTAAACCTAA+GGG | 0.629104 | 4.2:-87413461 | MS.gene33407:CDS |
CCTAGAAGAGTTATCCACTT+GGG | 0.630017 | 4.2:-87409673 | MS.gene33407:CDS |
AACGACTTATTGGCAACAGG+TGG | 0.637281 | 4.2:+87413704 | None:intergenic |
AGCAGCAACAAATTCAGCAG+AGG | 0.648280 | 4.2:+87414252 | None:intergenic |
GTAGCTCAGGATCCATTGCA+CGG | 0.663777 | 4.2:+87412339 | None:intergenic |
AAGGGAGTTGTTCATACACA+CGG | 0.665894 | 4.2:-87413443 | MS.gene33407:CDS |
GCGGACATCATCAAGGCCGG+TGG | 0.669750 | 4.2:-87409986 | MS.gene33407:CDS |
ACAGTTGGAAAACCATTACC+CGG | 0.672971 | 4.2:-87411809 | MS.gene33407:CDS |
AGAATATTGGAAACTTCCAG+AGG | 0.678041 | 4.2:-87411473 | MS.gene33407:intron |
ATTGGAGCGATATGGCATGA+CGG | 0.683780 | 4.2:-87411969 | MS.gene33407:CDS |
CATATCGCTCCAATAAACGA+TGG | 0.698759 | 4.2:+87411978 | None:intergenic |
AACAGGTTGAGGAAGTGCAG+AGG | 0.703474 | 4.2:+87412027 | None:intergenic |
CTGTTTATCAGGTACTAGTG+CGG | 0.710653 | 4.2:-87410005 | MS.gene33407:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 87407778 | 87418473 | 87407778 | ID=MS.gene33407 |
chr4.2 | mRNA | 87407778 | 87418473 | 87407778 | ID=MS.gene33407.t1;Parent=MS.gene33407 |
chr4.2 | exon | 87418380 | 87418473 | 87418380 | ID=MS.gene33407.t1.exon1;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87418380 | 87418473 | 87418380 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87415232 | 87415401 | 87415232 | ID=MS.gene33407.t1.exon2;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87415232 | 87415401 | 87415232 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87414162 | 87414314 | 87414162 | ID=MS.gene33407.t1.exon3;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87414162 | 87414314 | 87414162 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87413624 | 87413813 | 87413624 | ID=MS.gene33407.t1.exon4;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87413624 | 87413813 | 87413624 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87413427 | 87413515 | 87413427 | ID=MS.gene33407.t1.exon5;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87413427 | 87413515 | 87413427 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87413110 | 87413159 | 87413110 | ID=MS.gene33407.t1.exon6;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87413110 | 87413159 | 87413110 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87412660 | 87412825 | 87412660 | ID=MS.gene33407.t1.exon7;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87412660 | 87412825 | 87412660 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87412298 | 87412396 | 87412298 | ID=MS.gene33407.t1.exon8;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87412298 | 87412396 | 87412298 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87411967 | 87412059 | 87411967 | ID=MS.gene33407.t1.exon9;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87411967 | 87412059 | 87411967 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87411802 | 87411879 | 87411802 | ID=MS.gene33407.t1.exon10;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87411802 | 87411879 | 87411802 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87411474 | 87411578 | 87411474 | ID=MS.gene33407.t1.exon11;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87411474 | 87411578 | 87411474 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87410375 | 87410465 | 87410375 | ID=MS.gene33407.t1.exon12;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87410375 | 87410465 | 87410375 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87409943 | 87410016 | 87409943 | ID=MS.gene33407.t1.exon13;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87409943 | 87410016 | 87409943 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87409647 | 87409826 | 87409647 | ID=MS.gene33407.t1.exon14;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87409647 | 87409826 | 87409647 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87408534 | 87408587 | 87408534 | ID=MS.gene33407.t1.exon15;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87408534 | 87408587 | 87408534 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
chr4.2 | exon | 87407778 | 87407822 | 87407778 | ID=MS.gene33407.t1.exon16;Parent=MS.gene33407.t1 |
chr4.2 | CDS | 87407778 | 87407822 | 87407778 | ID=cds.MS.gene33407.t1;Parent=MS.gene33407.t1 |
Gene Sequence |
Protein sequence |