AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058103

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058103.t1 MTR_5g007640 95.400 587 12 2 1 572 1 587 0.0 1134
MS.gene058103.t1 MTR_2g105570 67.598 537 163 6 40 568 12 545 0.0 738
MS.gene058103.t1 MTR_4g005750 64.794 534 177 4 40 568 11 538 0.0 694
MS.gene058103.t1 MTR_4g128337 61.842 532 196 3 40 568 17 544 0.0 677
MS.gene058103.t1 MTR_4g057730 43.248 548 278 8 40 571 11 541 6.97e-142 421
MS.gene058103.t1 MTR_2g095510 42.329 541 288 6 40 570 11 537 3.26e-136 407
MS.gene058103.t1 MTR_3g460770 36.727 550 325 8 25 568 5 537 5.53e-128 386
MS.gene058103.t1 MTR_1g063120 41.296 540 279 12 47 564 21 544 7.47e-124 375
MS.gene058103.t1 MTR_1g063110 39.741 541 282 11 47 564 21 540 2.41e-117 359
MS.gene058103.t1 MTR_4g057730 42.259 478 243 8 40 501 11 471 8.37e-116 352
MS.gene058103.t1 MTR_1g026310 38.175 537 316 6 37 564 23 552 3.98e-114 351
MS.gene058103.t1 MTR_3g088870 38.800 500 283 8 72 564 67 550 1.07e-104 327
MS.gene058103.t1 MTR_5g027480 39.842 507 286 8 72 570 58 553 1.78e-104 326
MS.gene058103.t1 MTR_8g039720 37.427 513 285 9 72 564 55 551 1.06e-103 324
MS.gene058103.t1 MTR_4g057730 40.570 456 238 8 40 479 11 449 1.43e-103 320
MS.gene058103.t1 MTR_1g090737 38.606 531 296 9 47 564 45 558 2.10e-101 318
MS.gene058103.t1 MTR_4g077900 39.834 482 279 7 94 570 1 476 3.19e-99 310
MS.gene058103.t1 MTR_3g088880 36.454 502 289 7 72 564 68 548 4.87e-99 311
MS.gene058103.t1 MTR_5g027500 39.357 498 273 9 92 570 79 566 1.24e-98 311
MS.gene058103.t1 MTR_2g095510 39.111 450 250 6 40 479 11 446 6.47e-97 303
MS.gene058103.t1 MTR_1g073180 36.015 522 298 11 58 568 34 530 1.08e-90 289
MS.gene058103.t1 MTR_1g073180 34.731 501 291 11 58 547 56 531 1.61e-79 260
MS.gene058103.t1 MTR_1569s0010 28.295 516 329 12 83 566 23 529 1.64e-51 185
MS.gene058103.t1 MTR_3g035130 29.666 509 326 18 66 562 17 505 2.11e-47 173
MS.gene058103.t1 MTR_3g064420 28.388 546 341 16 58 567 18 549 1.44e-44 167
MS.gene058103.t1 MTR_1g026470 30.829 386 251 6 40 416 26 404 1.62e-44 163
MS.gene058103.t1 MTR_1g026430 30.366 382 250 6 40 412 26 400 1.85e-42 157
MS.gene058103.t1 MTR_5g008820 27.839 546 350 18 51 570 9 536 8.44e-42 158
MS.gene058103.t1 MTR_5g076220 29.151 518 320 18 81 565 39 542 1.65e-41 158
MS.gene058103.t1 MTR_0803s0020 26.694 487 338 9 80 558 259 734 1.75e-41 161
MS.gene058103.t1 MTR_3g035130 29.437 462 296 16 66 516 17 459 4.33e-40 152
MS.gene058103.t1 MTR_5g008800 27.223 551 349 17 51 570 9 538 6.67e-38 147
MS.gene058103.t1 MTR_5g076200 28.101 516 328 19 81 565 39 542 1.60e-37 146
MS.gene058103.t1 MTR_5g076240 26.642 548 354 20 51 565 9 541 3.17e-37 145
MS.gene058103.t1 MTR_5g023730 26.391 557 346 21 52 570 12 542 3.24e-36 142
MS.gene058103.t1 MTR_8g074040 25.981 535 340 16 69 570 71 582 4.01e-36 143
MS.gene058103.t1 MTR_0161s0050 27.186 526 322 19 81 565 39 544 5.36e-36 142
MS.gene058103.t1 MTR_2g044180 27.580 533 315 23 82 567 46 554 1.44e-31 129
MS.gene058103.t1 MTR_2g030240 25.627 558 349 19 60 570 7 545 2.22e-31 128
MS.gene058103.t1 MTR_4g121600 25.960 547 310 18 80 567 44 554 4.27e-31 127
MS.gene058103.t1 MTR_4g013210 26.369 493 295 19 66 516 66 532 7.10e-31 127
MS.gene058103.t1 MTR_4g011790 24.723 542 345 15 66 565 72 592 1.80e-30 126
MS.gene058103.t1 MTR_7g084850 24.906 530 339 16 81 565 202 717 2.67e-30 126
MS.gene058103.t1 MTR_4g011790 24.635 548 350 15 66 571 72 598 2.35e-29 123
MS.gene058103.t1 MTR_4g013210 27.638 398 234 14 209 570 65 444 5.69e-29 120
MS.gene058103.t1 MTR_4g011790 24.501 551 344 16 66 565 72 601 3.29e-28 119
MS.gene058103.t1 MTR_8g074120 29.517 393 230 15 201 570 125 493 3.04e-27 115
MS.gene058103.t1 MTR_8g074040 25.417 480 304 15 124 570 6 464 2.37e-26 113
MS.gene058103.t1 MTR_1g104810 25.230 543 297 19 31 489 51 568 2.70e-26 114
MS.gene058103.t1 MTR_2g044180 30.208 384 221 16 212 567 99 463 5.84e-26 111
MS.gene058103.t1 MTR_1g104810 25.918 490 268 16 80 499 47 511 6.41e-26 112
MS.gene058103.t1 MTR_2g030240 26.329 395 241 11 212 570 71 451 9.28e-26 110
MS.gene058103.t1 MTR_5g009360 27.236 492 267 17 80 499 77 549 2.53e-24 107
MS.gene058103.t1 MTR_5g009350 27.655 499 256 20 80 499 77 549 2.57e-24 107
MS.gene058103.t1 MTR_5g009350 27.655 499 256 20 80 499 77 549 2.67e-24 107
MS.gene058103.t1 MTR_5g009350 27.733 494 252 20 80 494 77 544 2.70e-24 107
MS.gene058103.t1 MTR_5g009350 27.600 500 257 20 80 500 77 550 3.02e-24 107
MS.gene058103.t1 MTR_5g009360 30.495 364 176 15 194 499 79 423 2.51e-23 104
MS.gene058103.t1 MTR_1g086600 26.482 506 274 20 83 505 100 590 3.21e-23 104
MS.gene058103.t1 MTR_7g109830 27.010 485 271 20 83 499 78 547 4.10e-23 104
MS.gene058103.t1 MTR_4g013210 23.853 545 320 20 66 570 66 555 4.83e-23 103
MS.gene058103.t1 MTR_4g057755 53.247 77 36 0 424 500 42 118 1.71e-22 93.6
MS.gene058103.t1 MTR_4g068670 24.490 490 289 17 76 499 72 546 2.77e-21 98.6
MS.gene058103.t1 MTR_1g034360 24.795 488 277 17 83 499 80 548 7.17e-21 97.1
MS.gene058103.t1 MTR_8g099420 26.253 499 239 23 83 490 81 541 2.83e-20 95.1
MS.gene058103.t1 MTR_4g013210 25.862 406 238 16 66 432 66 447 1.42e-18 89.4
MS.gene058103.t1 MTR_4g013210 24.742 388 217 14 209 570 65 403 4.32e-18 87.0
MS.gene058103.t1 MTR_3g084470 33.333 201 101 6 361 536 471 663 4.93e-18 88.2
MS.gene058103.t1 MTR_3g082660 24.691 486 276 20 83 490 138 611 7.83e-18 87.8
MS.gene058103.t1 MTR_3g084450 30.653 199 110 4 361 536 267 460 1.57e-16 83.2
MS.gene058103.t1 MTR_3g084450 30.653 199 110 4 361 536 475 668 2.54e-16 82.8
MS.gene058103.t1 MTR_8g083170 34.161 161 90 4 363 512 480 635 4.66e-16 82.0
MS.gene058103.t1 MTR_1054s0020 21.616 495 351 13 22 504 232 701 2.23e-15 80.1
MS.gene058103.t1 MTR_3g088890 52.381 63 30 0 474 536 10 72 2.97e-15 71.6
MS.gene058103.t1 MTR_1g026350 34.146 123 81 0 37 159 23 145 1.62e-13 69.3
MS.gene058103.t1 MTR_1g030290 33.143 175 91 8 334 494 421 583 2.11e-13 73.6
MS.gene058103.t1 MTR_4g066130 24.812 399 248 13 209 561 646 1038 3.20e-13 73.6
MS.gene058103.t1 MTR_3g087980 32.353 170 99 8 334 494 419 581 9.05e-12 68.6
MS.gene058103.t1 MTR_8g035620 23.553 501 311 21 105 559 142 616 1.72e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058103.t1 AT1G65060 73.346 544 135 4 30 568 22 560 0.0 815
MS.gene058103.t1 AT3G21240 64.286 546 187 3 27 568 9 550 0.0 730
MS.gene058103.t1 AT1G51680 63.158 551 188 4 28 568 12 557 0.0 687
MS.gene058103.t1 AT1G65060 71.554 457 120 4 30 481 22 473 0.0 668
MS.gene058103.t1 AT3G21240 64.644 478 161 3 27 500 9 482 0.0 639
MS.gene058103.t1 AT3G21240 64.644 478 161 3 27 500 9 482 0.0 639
MS.gene058103.t1 AT1G51680 62.428 519 180 4 28 536 12 525 0.0 633
MS.gene058103.t1 AT3G21230 56.452 558 228 5 24 570 13 566 0.0 607
MS.gene058103.t1 AT1G51680 62.733 483 165 4 28 500 12 489 0.0 591
MS.gene058103.t1 AT3G21230 55.472 530 221 5 24 542 13 538 0.0 560
MS.gene058103.t1 AT3G21230 55.738 488 201 5 24 500 13 496 0.0 520
MS.gene058103.t1 AT4G05160 43.297 552 272 9 40 570 11 542 1.51e-139 416
MS.gene058103.t1 AT3G21230 52.153 418 185 5 24 430 13 426 3.05e-135 401
MS.gene058103.t1 AT1G20510 38.274 533 307 6 41 564 17 536 5.10e-117 358
MS.gene058103.t1 AT1G62940 38.175 537 318 5 39 570 11 538 1.99e-112 346
MS.gene058103.t1 AT1G20500 36.381 536 323 7 36 564 18 542 3.00e-111 343
MS.gene058103.t1 AT1G20480 34.820 583 347 7 2 571 1 563 7.56e-111 342
MS.gene058103.t1 AT5G63380 39.034 497 283 9 73 564 69 550 7.19e-109 337
MS.gene058103.t1 AT4G19010 37.774 548 318 10 35 571 26 561 1.83e-105 328
MS.gene058103.t1 AT5G38120 34.935 541 313 10 41 564 24 542 1.14e-99 313
MS.gene058103.t1 AT1G20510 36.170 470 278 6 41 501 17 473 2.98e-90 286
MS.gene058103.t1 AT5G38120 33.658 514 302 10 41 537 24 515 1.34e-86 278
MS.gene058103.t1 AT1G20510 34.598 448 271 6 41 479 17 451 6.17e-78 254
MS.gene058103.t1 AT5G38120 32.845 478 282 10 41 501 24 479 3.29e-76 249
MS.gene058103.t1 AT5G38120 32.845 478 282 10 41 501 24 479 3.29e-76 249
MS.gene058103.t1 AT1G20490 31.538 390 237 8 73 448 55 428 2.11e-56 196
MS.gene058103.t1 AT1G20490 31.538 390 237 8 73 448 55 428 2.11e-56 196
MS.gene058103.t1 AT1G21540 29.391 558 338 19 51 570 9 548 1.92e-49 180
MS.gene058103.t1 AT5G16340 30.885 531 303 19 74 565 33 538 2.71e-48 177
MS.gene058103.t1 AT3G48990 30.667 525 311 17 61 562 10 504 4.49e-48 175
MS.gene058103.t1 AT5G16370 30.508 531 305 19 74 565 33 538 3.48e-47 174
MS.gene058103.t1 AT1G77240 27.224 562 340 20 51 570 9 543 1.28e-45 169
MS.gene058103.t1 AT1G21530 27.455 550 348 18 51 565 9 542 5.57e-44 164
MS.gene058103.t1 AT1G65890 27.679 560 341 17 51 565 9 549 1.69e-43 164
MS.gene058103.t1 AT1G21530 27.667 553 341 20 51 565 9 540 1.19e-42 161
MS.gene058103.t1 AT1G65880 27.469 557 347 17 51 565 9 550 4.74e-41 157
MS.gene058103.t1 AT1G75960 26.802 541 359 13 51 565 9 538 5.78e-41 156
MS.gene058103.t1 AT1G66120 26.465 563 337 15 51 565 9 542 8.83e-38 147
MS.gene058103.t1 AT3G16170 23.883 582 369 15 36 570 52 606 2.16e-36 144
MS.gene058103.t1 AT1G30520 26.804 582 334 19 50 570 1 551 1.38e-35 141
MS.gene058103.t1 AT1G30520 26.804 582 334 19 50 570 1 551 1.38e-35 141
MS.gene058103.t1 AT1G20560 25.590 551 362 17 51 570 11 544 4.68e-35 139
MS.gene058103.t1 AT1G68270 27.094 561 315 21 51 566 9 520 2.95e-34 137
MS.gene058103.t1 AT1G76290 25.651 538 362 15 51 565 9 531 7.98e-34 135
MS.gene058103.t1 AT3G16910 25.179 560 368 20 45 567 12 557 5.86e-33 133
MS.gene058103.t1 AT2G17650 25.180 556 328 21 67 567 74 596 4.97e-28 119
MS.gene058103.t1 AT1G30520 27.689 437 240 15 94 484 45 451 2.97e-27 115
MS.gene058103.t1 AT1G30520 27.689 437 240 15 94 484 45 451 2.97e-27 115
MS.gene058103.t1 AT5G27600 25.380 461 277 14 83 487 120 569 9.26e-26 112
MS.gene058103.t1 AT4G23850 27.872 470 235 19 83 474 81 524 4.85e-25 110
MS.gene058103.t1 AT1G64400 27.174 460 251 14 83 474 81 524 7.84e-25 109
MS.gene058103.t1 AT5G36880 23.574 526 347 15 83 565 199 712 9.82e-25 109
MS.gene058103.t1 AT5G36880 23.574 526 347 15 83 565 149 662 1.03e-24 109
MS.gene058103.t1 AT5G36880 23.574 526 347 15 83 565 149 662 1.03e-24 109
MS.gene058103.t1 AT5G36880 23.574 526 347 15 83 565 149 662 1.03e-24 109
MS.gene058103.t1 AT5G36880 23.574 526 347 15 83 565 149 662 1.03e-24 109
MS.gene058103.t1 AT4G11030 26.552 467 245 18 83 474 81 524 2.08e-24 108
MS.gene058103.t1 AT2G47240 25.508 541 300 18 31 499 38 547 3.17e-24 107
MS.gene058103.t1 AT2G47240 25.508 541 300 18 31 499 38 547 3.17e-24 107
MS.gene058103.t1 AT2G47240 25.508 541 300 18 31 499 38 547 3.17e-24 107
MS.gene058103.t1 AT3G05970 30.530 321 167 12 212 487 260 569 3.59e-24 107
MS.gene058103.t1 AT2G47240 26.380 489 269 17 83 499 19 488 9.11e-24 105
MS.gene058103.t1 AT1G20560 26.400 375 246 11 211 570 107 466 1.50e-23 104
MS.gene058103.t1 AT1G49430 25.963 493 267 20 83 499 81 551 1.04e-21 99.8
MS.gene058103.t1 AT3G23790 22.378 572 317 17 81 536 110 670 1.48e-19 93.2
MS.gene058103.t1 AT5G36880 23.362 458 299 14 83 500 149 594 1.17e-17 87.0
MS.gene058103.t1 AT1G77590 24.547 497 275 20 83 499 108 584 1.74e-17 86.7
MS.gene058103.t1 AT1G77590 27.473 364 174 17 210 499 91 438 2.70e-17 85.5
MS.gene058103.t1 AT4G14070 31.481 162 95 3 360 510 491 647 3.49e-14 76.3

Find 121 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTTCTGGATGCCTAATT+TGG 0.113190 5.4:-2964164 None:intergenic
TCATAATTACATCGCCTTTC+TGG 0.154790 5.4:-2964177 None:intergenic
CCCAGTACTGTCCATGTCTT+TGG 0.201857 5.4:+2968494 MS.gene058103:CDS
TGGTGTAGAATTTGACTTTA+AGG 0.220793 5.4:+2964387 MS.gene058103:CDS
CCAAGAGAATGACCAGTTTC+AGG 0.223496 5.4:-2968597 None:intergenic
TAGAATTCCTCAAGCTGTTT+TGG 0.237265 5.4:+2964930 MS.gene058103:CDS
TTCATTGCTGCTTCCATGAT+TGG 0.246905 5.4:+2964235 MS.gene058103:CDS
ATTTAAATATATGAGTAGTT+TGG 0.255838 5.4:-2963973 None:intergenic
GGTTGTTCCGCCGTTGGTTT+TGG 0.268098 5.4:+2964801 MS.gene058103:CDS
GGTAGCGCCACCGCGTCTTC+TGG 0.294044 5.4:-2964502 None:intergenic
TCTGTTGTTAAATATAGATT+TGG 0.309547 5.4:-2964619 None:intergenic
ATCTTTCCTGCAGGAGACTT+TGG 0.324085 5.4:-2969655 None:intergenic
GCAGCTGGTTTGTCCAAATT+AGG 0.329485 5.4:+2964151 MS.gene058103:CDS
TTGATGCATAAATTTGAGAT+AGG 0.337125 5.4:+2964733 MS.gene058103:CDS
TTGTCTGGTGCTGCACCGTT+AGG 0.353019 5.4:+2964880 MS.gene058103:CDS
AGCTTTCTAGCTTTGCTCTT+AGG 0.360829 5.4:-2969690 None:intergenic
AAAGGACTTTATAGCTAAAC+AGG 0.362651 5.4:+2969266 MS.gene058103:CDS
TGAAGTTCCTGTTGCCTTTG+TGG 0.364932 5.4:+2969206 MS.gene058103:CDS
TTTAAATATATGAGTAGTTT+GGG 0.366259 5.4:-2963972 None:intergenic
AACCCATTCCCAACAAGTTC+AGG 0.373293 5.4:+2968528 MS.gene058103:CDS
CCAGTACTGTCCATGTCTTT+GGG 0.375039 5.4:+2968495 MS.gene058103:CDS
CCTGTTGTTCCTGAAGAAAA+TGG 0.377277 5.4:-2964523 None:intergenic
ATAGGTTTCGGCGTAGGTAT+AGG 0.384378 5.4:-2964110 None:intergenic
TGTGTTAGAATCACTCCTTT+AGG 0.387631 5.4:-2964550 None:intergenic
TCGACATTGGAGATAGGTTT+CGG 0.392417 5.4:-2964122 None:intergenic
AAAGTTCTTGACCCTGAAAC+TGG 0.398423 5.4:+2968585 MS.gene058103:CDS
TGGTTAGAGATAGGTATATC+TGG 0.398994 5.4:-2964004 None:intergenic
AGTTTGATCTGAGTTCAATA+AGG 0.403154 5.4:+2964851 MS.gene058103:CDS
TCCTCAAAATTATCAAGTTT+AGG 0.419228 5.4:-2963935 None:intergenic
GATCTTACCACAAAGGCAAC+AGG 0.431165 5.4:-2969213 None:intergenic
AGATACTTCTGCGGTCTGTT+TGG 0.433087 5.4:-2963897 None:intergenic
ACAGCTGCATCTGCAATAGA+TGG 0.434911 5.4:-2969062 None:intergenic
GGCGATGGTTGTTCCGCCGT+TGG 0.443145 5.4:+2964795 MS.gene058103:CDS
ATATACCTTTCATAATTTGT+TGG 0.446036 5.4:-2968653 None:intergenic
CCCAAAGACATGGACAGTAC+TGG 0.456217 5.4:-2968495 None:intergenic
GCCTTTGTGGTAAGATCAAA+TGG 0.457862 5.4:+2969219 MS.gene058103:CDS
TTGTTTGAAGATTTCAGCAC+TGG 0.468140 5.4:-2964290 None:intergenic
CCTGAAACTGGTCATTCTCT+TGG 0.471831 5.4:+2968597 MS.gene058103:CDS
TGTTTAATCGTTGCTGCCAC+CGG 0.474076 5.4:+2964082 MS.gene058103:CDS
ATCGAACGAAGAGGATATTC+CGG 0.474093 5.4:+2964465 MS.gene058103:CDS
CAAGAGAATGACCAGTTTCA+GGG 0.474741 5.4:-2968596 None:intergenic
GGTTGCGACCGCGCCAATCA+TGG 0.479681 5.4:-2964248 None:intergenic
AGCCTGAACTTGTTGGGAAT+GGG 0.480663 5.4:-2968530 None:intergenic
TTCCTCAATATCTTTCCTGC+AGG 0.481601 5.4:-2969664 None:intergenic
TGCATGTGTCTTCAGGGGTA+CGG 0.483207 5.4:+2968456 MS.gene058103:intron
AGAAGACCTTCAAGTTCAGC+AGG 0.488280 5.4:-2969029 None:intergenic
ATTTCAGCACTGGTGTAGAA+AGG 0.492985 5.4:-2964280 None:intergenic
GGCGAAGAGTCCGACGGTGG+CGG 0.493316 5.4:+2964828 MS.gene058103:CDS
TGATCTGAGTTCAATAAGGT+TGG 0.493627 5.4:+2964855 MS.gene058103:CDS
CTACTATTGATGAGGAGGGT+TGG 0.494979 5.4:+2968823 MS.gene058103:CDS
CCACATGAGCCTGAACTTGT+TGG 0.497161 5.4:-2968537 None:intergenic
TTTGAGATAGGGACTTTGCT+TGG 0.499477 5.4:+2964745 MS.gene058103:CDS
TGTCTGGTGCTGCACCGTTA+GGG 0.502213 5.4:+2964881 MS.gene058103:CDS
TTTCGAAGCAGTAGGTATGA+AGG 0.503478 5.4:-2964033 None:intergenic
GGGTACGGTATGACAGAGGC+AGG 0.503975 5.4:+2968471 MS.gene058103:CDS
TGGCTTCATACTGGTGATGT+TGG 0.506200 5.4:+2968843 MS.gene058103:CDS
TGATGCATAAATTTGAGATA+GGG 0.511926 5.4:+2964734 MS.gene058103:CDS
ACCTTTCTGAATTTGCTGAT+CGG 0.512697 5.4:+2964056 MS.gene058103:CDS
CCAAAGACATGGACAGTACT+GGG 0.515005 5.4:-2968494 None:intergenic
GAGGAGGGTTGGCTTCATAC+TGG 0.517863 5.4:+2968834 MS.gene058103:CDS
CTCCTGCAGGAAAGATATTG+AGG 0.522472 5.4:+2969662 MS.gene058103:CDS
TCCAAATTAGGCATCCAGAA+AGG 0.523845 5.4:+2964163 MS.gene058103:CDS
ACCTGTCCCAAAACAGCTTG+AGG 0.525310 5.4:-2964937 None:intergenic
TCGAAGCAGTAGGTATGAAG+GGG 0.525990 5.4:-2964031 None:intergenic
GTCTGTTTGGCATCAACAGA+AGG 0.530691 5.4:-2963884 None:intergenic
CGAAGAGGATATTCCGGTAG+TGG 0.532410 5.4:+2964471 MS.gene058103:CDS
GAGCCTGAACTTGTTGGGAA+TGG 0.535251 5.4:-2968531 None:intergenic
TGGTCTTATACAGAAACATA+AGG 0.543491 5.4:+2964765 MS.gene058103:CDS
ACAATTCACCGGTGGTTCGT+CGG 0.543658 5.4:-2964419 None:intergenic
GCCGATCAGCAAATTCAGAA+AGG 0.544730 5.4:-2964057 None:intergenic
AGCACTGGTGTAGAAAGGAT+TGG 0.547952 5.4:-2964275 None:intergenic
AACAAGTGTGGCACAACAAG+TGG 0.550436 5.4:+2964585 MS.gene058103:CDS
ACATAAGGTGACGGTGGCGA+TGG 0.550579 5.4:+2964780 MS.gene058103:CDS
CTTTGCAAAGCCCAAAGACA+TGG 0.552300 5.4:-2968505 None:intergenic
TTCGAAGCAGTAGGTATGAA+GGG 0.552748 5.4:-2964032 None:intergenic
AGAGAAAATATATGAAACAA+TGG 0.554403 5.4:-2964664 None:intergenic
AAAGAACTCATCAAATTCAA+AGG 0.555133 5.4:+2968909 MS.gene058103:CDS
TCTTCAAGCTCCTTCCCTAA+CGG 0.558632 5.4:-2964895 None:intergenic
GCAATTCCAAAGTCTCCTGC+AGG 0.562121 5.4:+2969649 MS.gene058103:CDS
CACATGAGCCTGAACTTGTT+GGG 0.567491 5.4:-2968536 None:intergenic
TCTAACTGAAGAGATTGTAA+AGG 0.570690 5.4:+2969248 MS.gene058103:CDS
CTATTGTGTGCACTGAGAGC+AGG 0.571264 5.4:+2964697 MS.gene058103:CDS
TTGGAGATAGGTTTCGGCGT+AGG 0.573267 5.4:-2964116 None:intergenic
CCACGTATACAAATTTCACC+AGG 0.574095 5.4:-2968630 None:intergenic
TCTGGATCGATCTCCACTAC+CGG 0.574630 5.4:-2964484 None:intergenic
GGCGTTGGCGAAGAGTCCGA+CGG 0.576837 5.4:+2964822 MS.gene058103:CDS
CGTGGCCAACAAATTATGAA+AGG 0.577175 5.4:+2968648 MS.gene058103:CDS
TTCGCCAACGCCAAAACCAA+CGG 0.577652 5.4:-2964811 None:intergenic
GGAACAACAGGATTACCTAA+AGG 0.579367 5.4:+2964535 MS.gene058103:CDS
TGGTGCTGCACCGTTAGGGA+AGG 0.583252 5.4:+2964885 MS.gene058103:CDS
GATAACAACCGACGAACCAC+CGG 0.584426 5.4:+2964411 MS.gene058103:CDS
TCCATTTGATCTTACCACAA+AGG 0.589752 5.4:-2969220 None:intergenic
CCTGGTGAAATTTGTATACG+TGG 0.595129 5.4:+2968630 MS.gene058103:CDS
CCAACAAGTTCAGGCTCATG+TGG 0.595377 5.4:+2968537 MS.gene058103:CDS
TCTCTTGGTTATAATCAACC+TGG 0.596556 5.4:+2968612 MS.gene058103:CDS
AGATCAAACTCCGCCACCGT+CGG 0.601146 5.4:-2964838 None:intergenic
TATCTTCTAAGACATTTAGG+TGG 0.607830 5.4:-2969713 None:intergenic
AGGCAAAAGGATGTTGCTGC+TGG 0.614853 5.4:+2969183 MS.gene058103:intron
GTGCACTGAGAGCAGGAAGT+GGG 0.619752 5.4:+2964704 MS.gene058103:CDS
GAAGACCTTCAAGTTCAGCA+GGG 0.630277 5.4:-2969028 None:intergenic
TGTGCACTGAGAGCAGGAAG+TGG 0.634610 5.4:+2964703 MS.gene058103:CDS
TGCTGCTTCCATGATTGGCG+CGG 0.635104 5.4:+2964240 MS.gene058103:CDS
AAAACTACTATTGATGAGGA+GGG 0.640442 5.4:+2968819 MS.gene058103:CDS
AAGACCTTCAAGTTCAGCAG+GGG 0.660253 5.4:-2969027 None:intergenic
CGAAGCAGTAGGTATGAAGG+GGG 0.662301 5.4:-2964030 None:intergenic
CAAGAGTTTAACAACAAGTG+TGG 0.662813 5.4:+2964573 MS.gene058103:CDS
GTGGCAGCAACGATTAAACA+AGG 0.664886 5.4:-2964079 None:intergenic
TGCACTGAGAGCAGGAAGTG+GGG 0.671062 5.4:+2964705 MS.gene058103:CDS
AACAGAAGTAGATACTTCTG+CGG 0.673811 5.4:-2963906 None:intergenic
GATTTCTGAATCGAACGAAG+AGG 0.677363 5.4:+2964456 MS.gene058103:CDS
TATACAGAAACATAAGGTGA+CGG 0.680297 5.4:+2964771 MS.gene058103:CDS
GCCAACGCCAAAACCAACGG+CGG 0.680356 5.4:-2964808 None:intergenic
AGTGTGGCACAACAAGTGGA+CGG 0.684219 5.4:+2964589 MS.gene058103:CDS
GTTGGCGAAGAGTCCGACGG+TGG 0.684404 5.4:+2964825 MS.gene058103:CDS
GGTGTAGAAAGGATTGGCAG+TGG 0.691502 5.4:-2964269 None:intergenic
AAATGTAAACAATTCACCGG+TGG 0.693365 5.4:-2964427 None:intergenic
AGACCTTCAAGTTCAGCAGG+GGG 0.699169 5.4:-2969026 None:intergenic
TCAGGGGTACGGTATGACAG+AGG 0.704387 5.4:+2968467 MS.gene058103:intron
ACAGAAACATAAGGTGACGG+TGG 0.707593 5.4:+2964774 MS.gene058103:CDS
GATCGATCCAGAAGACGCGG+TGG 0.720243 5.4:+2964495 MS.gene058103:CDS
GGAGATCGATCCAGAAGACG+CGG 0.726053 5.4:+2964492 MS.gene058103:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAATTAATCTCTAA+TGG + chr5.4:2969144-2969163 MS.gene058103:intron 10.0%
!! AAATCAAAAATAAAAAGAAT+AGG + chr5.4:2968278-2968297 MS.gene058103:intron 10.0%
!! TAAATTAATTAAGATACTTA+CGG - chr5.4:2969092-2969111 None:intergenic 10.0%
!!! AAATTCAACTATTTTTTTTT+AGG - chr5.4:2966073-2966092 None:intergenic 10.0%
!!! AAGAATATTTTCTTATATAT+AGG - chr5.4:2966510-2966529 None:intergenic 10.0%
!!! AATTATTATTTTGTTATGTT+AGG + chr5.4:2969001-2969020 MS.gene058103:intron 10.0%
!!! AATTCAACTATTTTTTTTTA+GGG - chr5.4:2966072-2966091 None:intergenic 10.0%
!!! ATTTTGATAGTAATTTAATA+TGG + chr5.4:2966683-2966702 MS.gene058103:intron 10.0%
!!! TACAGATTTTTTTTTTTTTA+AGG - chr5.4:2966156-2966175 None:intergenic 10.0%
!!! TTTTAATATCTCTTATAAAT+AGG + chr5.4:2965125-2965144 MS.gene058103:intron 10.0%
!!! TTTTTATTTTTGATTTTCTT+AGG - chr5.4:2968274-2968293 None:intergenic 10.0%
!! AAAAATAAAAAGAATAGGAT+TGG + chr5.4:2968283-2968302 MS.gene058103:intron 15.0%
!! AAAATAAAAAGAATAGGATT+GGG + chr5.4:2968284-2968303 MS.gene058103:intron 15.0%
!! AAATTAATGAAATACATACT+TGG - chr5.4:2968938-2968957 None:intergenic 15.0%
!! AAATTAATTAAGATACTTAC+GGG - chr5.4:2969091-2969110 None:intergenic 15.0%
!! ACCTCAAAATAATTATTAAT+TGG - chr5.4:2966327-2966346 None:intergenic 15.0%
!! AGAAACTTAAGTTAATAAAA+TGG + chr5.4:2965064-2965083 MS.gene058103:intron 15.0%
!! ATTAAATGTATCTTACAAAT+AGG - chr5.4:2965190-2965209 None:intergenic 15.0%
!! ATTTAAATATATGAGTAGTT+TGG - chr5.4:2963976-2963995 None:intergenic 15.0%
!! CCTCAAAATAATTATTAATT+GGG - chr5.4:2966326-2966345 None:intergenic 15.0%
!! CTATAATTACTTATTAATAG+AGG + chr5.4:2966756-2966775 MS.gene058103:intron 15.0%
!! CTCTATTAATAAGTAATTAT+AGG - chr5.4:2966758-2966777 None:intergenic 15.0%
!! GAAGAAAAATATTTATCATA+AGG - chr5.4:2968699-2968718 None:intergenic 15.0%
!! TAAGCATTAATTATATATGT+CGG - chr5.4:2967368-2967387 None:intergenic 15.0%
!! TATATACATAAAAAGTCAAA+TGG - chr5.4:2965688-2965707 None:intergenic 15.0%
!! TTTAAATATATGAGTAGTTT+GGG - chr5.4:2963975-2963994 None:intergenic 15.0%
!!! AAGAATCTTTTCTTATATAT+AGG + chr5.4:2966609-2966628 MS.gene058103:intron 15.0%
!!! ACAAATATTAATGTTTTGTT+TGG - chr5.4:2967288-2967307 None:intergenic 15.0%
!!! AGCATAAATTTTATTTAATG+AGG - chr5.4:2968980-2968999 None:intergenic 15.0%
!!! ATAAGATTCTAAACATATTT+TGG + chr5.4:2967622-2967641 MS.gene058103:intron 15.0%
!!! ATCATACATTTCAATATTTT+AGG + chr5.4:2968771-2968790 MS.gene058103:intron 15.0%
!!! ATTATAAAAATTCCTTTTGT+TGG - chr5.4:2968043-2968062 None:intergenic 15.0%
!!! CAAAACTTTTTTTTAATTAC+CGG + chr5.4:2968363-2968382 MS.gene058103:intron 15.0%
!!! CTTAAGTTTCTTTTATAAAT+AGG - chr5.4:2965055-2965074 None:intergenic 15.0%
!!! GTAGTTAAACTTTTATAATA+CGG + chr5.4:2967706-2967725 MS.gene058103:intron 15.0%
!!! TAAAAGAACTTTTTTTTTGA+AGG - chr5.4:2967582-2967601 None:intergenic 15.0%
!!! TATTCTTTTTGTTTTTTTGA+AGG - chr5.4:2967794-2967813 None:intergenic 15.0%
!! AAAACAAACAAATTCAAAGA+AGG - chr5.4:2966198-2966217 None:intergenic 20.0%
!! AATAGAATTAAATGTACATG+CGG - chr5.4:2965968-2965987 None:intergenic 20.0%
!! AGAAAGGTAAATATTATTAG+GGG - chr5.4:2967077-2967096 None:intergenic 20.0%
!! AGAGAAAATATATGAAACAA+TGG - chr5.4:2964667-2964686 None:intergenic 20.0%
!! AGAGAAAGGTAAATATTATT+AGG - chr5.4:2967079-2967098 None:intergenic 20.0%
!! ATAATTATGTGATTGAGAAT+TGG + chr5.4:2965282-2965301 MS.gene058103:intron 20.0%
!! ATGAAAGAAAGAATATTACT+AGG - chr5.4:2968721-2968740 None:intergenic 20.0%
!! ATTAATTATATATGTCGGTA+GGG - chr5.4:2967363-2967382 None:intergenic 20.0%
!! CCTATTTATAAGAGAAATTT+GGG - chr5.4:2965592-2965611 None:intergenic 20.0%
!! GAGAAAGGTAAATATTATTA+GGG - chr5.4:2967078-2967097 None:intergenic 20.0%
!! TAATTACTTATTAATAGAGG+AGG + chr5.4:2966759-2966778 MS.gene058103:intron 20.0%
!! TCCTATTTATAAGAGAAATT+TGG - chr5.4:2965593-2965612 None:intergenic 20.0%
!! TCTGTTGTTAAATATAGATT+TGG - chr5.4:2964622-2964641 None:intergenic 20.0%
!! TTAGGTGTATATACAATATT+GGG + chr5.4:2967860-2967879 MS.gene058103:intron 20.0%
!! TTGTAAAATTACTTCTGATA+AGG - chr5.4:2965642-2965661 None:intergenic 20.0%
!! TTTATAGAAAATACTCTCTT+CGG - chr5.4:2965616-2965635 None:intergenic 20.0%
!! TTTCAGAAAAATTAAGAGAA+AGG - chr5.4:2967093-2967112 None:intergenic 20.0%
!!! AATTATTTCTAACCATTTAC+CGG + chr5.4:2967511-2967530 MS.gene058103:intron 20.0%
!!! ATATACCTTTCATAATTTGT+TGG - chr5.4:2968656-2968675 None:intergenic 20.0%
!!! CATAACTCTCTTTATTTTAT+AGG - chr5.4:2968245-2968264 None:intergenic 20.0%
!!! CCCAATTAATAATTATTTTG+AGG + chr5.4:2966323-2966342 MS.gene058103:intron 20.0%
!!! CGGTAATTAAAAAAAAGTTT+TGG - chr5.4:2968365-2968384 None:intergenic 20.0%
!!! TATTTTCTTATATATAGGAC+CGG - chr5.4:2966505-2966524 None:intergenic 20.0%
!!! TTGCAATTATGTACAAATTT+TGG + chr5.4:2966850-2966869 MS.gene058103:intron 20.0%
! AAAGAACTCATCAAATTCAA+AGG + chr5.4:2968909-2968928 MS.gene058103:CDS 25.0%
! AAAGAATCCCAAAGAATAAT+GGG - chr5.4:2967738-2967757 None:intergenic 25.0%
! AACAAAAACTACTATTGATG+AGG + chr5.4:2968815-2968834 MS.gene058103:CDS 25.0%
! AAGACAACTGAAAATTTGAA+AGG + chr5.4:2967119-2967138 MS.gene058103:intron 25.0%
! AATCAATCAAATGAGAATGA+AGG - chr5.4:2969513-2969532 None:intergenic 25.0%
! AATCGGTCTTTCTATTATAA+TGG - chr5.4:2969440-2969459 None:intergenic 25.0%
! AATGATATAGAGTTATTGCT+GGG + chr5.4:2966299-2966318 MS.gene058103:intron 25.0%
! AGTTCATACATCAGAAAATA+AGG + chr5.4:2965716-2965735 MS.gene058103:intron 25.0%
! ATGTATCTTACAAATAGGAT+TGG - chr5.4:2965185-2965204 None:intergenic 25.0%
! ATTAACCGATCGTAAAAAAA+AGG + chr5.4:2967232-2967251 MS.gene058103:intron 25.0%
! ATTTACAATGGTGCTTAATA+GGG - chr5.4:2965856-2965875 None:intergenic 25.0%
! CAATTTAGTCCTTAACAAAT+CGG - chr5.4:2969457-2969476 None:intergenic 25.0%
! CATTAATTATATATGTCGGT+AGG - chr5.4:2967364-2967383 None:intergenic 25.0%
! CCCAAATTTCTCTTATAAAT+AGG + chr5.4:2965589-2965608 MS.gene058103:intron 25.0%
! CTGAAAGAAGATTATTTAAC+TGG + chr5.4:2968399-2968418 MS.gene058103:intron 25.0%
! CTTAGGTGTATATACAATAT+TGG + chr5.4:2967859-2967878 MS.gene058103:intron 25.0%
! GAAAAATGTAAACAATTCAC+CGG - chr5.4:2964433-2964452 None:intergenic 25.0%
! TAAAGAATCCCAAAGAATAA+TGG - chr5.4:2967739-2967758 None:intergenic 25.0%
! TAATGATATAGAGTTATTGC+TGG + chr5.4:2966298-2966317 MS.gene058103:intron 25.0%
! TACATAAAAAGTCAAATGGA+AGG - chr5.4:2965684-2965703 None:intergenic 25.0%
! TATTTACAATGGTGCTTAAT+AGG - chr5.4:2965857-2965876 None:intergenic 25.0%
! TCCTCAAAATTATCAAGTTT+AGG - chr5.4:2963938-2963957 None:intergenic 25.0%
! TCTATTTATGAGAGAAAGTT+AGG + chr5.4:2965507-2965526 MS.gene058103:intron 25.0%
! TTAACCGATCGTAAAAAAAA+GGG + chr5.4:2967233-2967252 MS.gene058103:intron 25.0%
! TTTCAGATTCATTGAATAAC+CGG - chr5.4:2968385-2968404 None:intergenic 25.0%
!! AGTATTTCTTCTTCTTTTGT+TGG + chr5.4:2967476-2967495 MS.gene058103:intron 25.0%
!! CTTTTGCCTGTTAAAATATT+TGG - chr5.4:2969172-2969191 None:intergenic 25.0%
!! GGTGAATTGTTTACATTTTT+CGG + chr5.4:2964432-2964451 MS.gene058103:CDS 25.0%
!! TCTTTTCTTATATATAGGAC+CGG + chr5.4:2966614-2966633 MS.gene058103:intron 25.0%
!! TGATGCATAAATTTGAGATA+GGG + chr5.4:2964734-2964753 MS.gene058103:CDS 25.0%
!! TTGATGCATAAATTTGAGAT+AGG + chr5.4:2964733-2964752 MS.gene058103:CDS 25.0%
!!! AATAATTATTTTGAGGTGCT+GGG + chr5.4:2966330-2966349 MS.gene058103:intron 25.0%
!!! ACCTAAACTTGATAATTTTG+AGG + chr5.4:2963934-2963953 MS.gene058103:CDS 25.0%
!!! ACTAGTGTTTTTTGCAATTT+TGG - chr5.4:2967965-2967984 None:intergenic 25.0%
!!! ATGGAACCAAATATTTTAAC+AGG + chr5.4:2969163-2969182 MS.gene058103:intron 25.0%
!!! CAAATATTTTAACAGGCAAA+AGG + chr5.4:2969170-2969189 MS.gene058103:intron 25.0%
!!! GTATTTCGTATTTTTGCTTA+GGG + chr5.4:2967818-2967837 MS.gene058103:intron 25.0%
!!! TAATAATTATTTTGAGGTGC+TGG + chr5.4:2966329-2966348 MS.gene058103:intron 25.0%
!!! TGTATTTCGTATTTTTGCTT+AGG + chr5.4:2967817-2967836 MS.gene058103:intron 25.0%
!!! TGTTGGTGAAATATTTTTTG+AGG - chr5.4:2966466-2966485 None:intergenic 25.0%
!!! TTTACCCTTTTTTTTACGAT+CGG - chr5.4:2967240-2967259 None:intergenic 25.0%
AAAAACTACTATTGATGAGG+AGG + chr5.4:2968818-2968837 MS.gene058103:CDS 30.0%
AAAACTACTATTGATGAGGA+GGG + chr5.4:2968819-2968838 MS.gene058103:CDS 30.0%
AAACTTTGACCTTACTTGTT+AGG - chr5.4:2967915-2967934 None:intergenic 30.0%
AAAGGACTTTATAGCTAAAC+AGG + chr5.4:2969266-2969285 MS.gene058103:CDS 30.0%
AACATTTCTATAGCCCATAT+TGG - chr5.4:2967999-2968018 None:intergenic 30.0%
AAGGGGATACTTATTTACAA+TGG - chr5.4:2965868-2965887 None:intergenic 30.0%
AATGAATATGGTGCTTATGA+AGG + chr5.4:2965897-2965916 MS.gene058103:intron 30.0%
ACCTAAATTAAACATGTGTC+TGG + chr5.4:2968330-2968349 MS.gene058103:intron 30.0%
AGTTTGATCTGAGTTCAATA+AGG + chr5.4:2964851-2964870 MS.gene058103:CDS 30.0%
ATCTTACAAATAGGATTGGA+GGG - chr5.4:2965181-2965200 None:intergenic 30.0%
ATGCCCTCATTAAATTAACT+TGG - chr5.4:2965318-2965337 None:intergenic 30.0%
ATGTGGTATTTATTGTGAAC+AGG + chr5.4:2969585-2969604 MS.gene058103:intron 30.0%
ATGTGTATAATCTGATCACT+TGG - chr5.4:2965153-2965172 None:intergenic 30.0%
ATTCTTAGACCATCTACAAT+GGG + chr5.4:2965821-2965840 MS.gene058103:intron 30.0%
CTCCAATATTTGACTAAAAG+TGG + chr5.4:2969561-2969580 MS.gene058103:intron 30.0%
CTCTCATAAATAGAACAGAA+AGG - chr5.4:2965501-2965520 None:intergenic 30.0%
TAAGGACTAAATTGTGTCAT+CGG + chr5.4:2969463-2969482 MS.gene058103:intron 30.0%
TATACAGAAACATAAGGTGA+CGG + chr5.4:2964771-2964790 MS.gene058103:CDS 30.0%
TATAGATAAATGACTTCAGC+TGG + chr5.4:2966730-2966749 MS.gene058103:intron 30.0%
TATCTTACAAATAGGATTGG+AGG - chr5.4:2965182-2965201 None:intergenic 30.0%
TCTAACTGAAGAGATTGTAA+AGG + chr5.4:2969248-2969267 MS.gene058103:CDS 30.0%
TGGCCAAGTTAATTTAATGA+GGG + chr5.4:2965312-2965331 MS.gene058103:intron 30.0%
TGTACATAATTGCAAAGACA+AGG - chr5.4:2966845-2966864 None:intergenic 30.0%
TTAGGTTCACAAATCTAACT+AGG - chr5.4:2968316-2968335 None:intergenic 30.0%
TTCATAAGCACCATATTCAT+TGG - chr5.4:2965898-2965917 None:intergenic 30.0%
TTTACAATGGTGCTTAATAG+GGG - chr5.4:2965855-2965874 None:intergenic 30.0%
! AACAAGTAAGGTCAAAGTTT+TGG + chr5.4:2967915-2967934 MS.gene058103:intron 30.0%
! ACCAGACACATGTTTAATTT+AGG - chr5.4:2968334-2968353 None:intergenic 30.0%
! CAGAAAGGAGTAAAAGTATA+CGG - chr5.4:2965486-2965505 None:intergenic 30.0%
! TGGTGTAGAATTTGACTTTA+AGG + chr5.4:2964387-2964406 MS.gene058103:CDS 30.0%
! TTGTTAGGTTGCTTATGAAT+TGG - chr5.4:2968128-2968147 None:intergenic 30.0%
! TTTTAGTCAGAGACAGAATT+GGG - chr5.4:2969401-2969420 None:intergenic 30.0%
!! ATAGAAAGACCGATTTGTTA+AGG + chr5.4:2969445-2969464 MS.gene058103:intron 30.0%
!! ATATTCATTGGTGTCACAAA+GGG - chr5.4:2965886-2965905 None:intergenic 30.0%
!! ATTTTAGTCAGAGACAGAAT+TGG - chr5.4:2969402-2969421 None:intergenic 30.0%
!! TGGTCTTATACAGAAACATA+AGG + chr5.4:2964765-2964784 MS.gene058103:CDS 30.0%
!!! ATTTTTTTGCATGTGTCTTC+AGG + chr5.4:2968449-2968468 MS.gene058103:intron 30.0%
!!! GGTGAAATATTTTTTGAGGA+AGG - chr5.4:2966462-2966481 None:intergenic 30.0%
!!! TGCCACTTTTAGTCAAATAT+TGG - chr5.4:2969566-2969585 None:intergenic 30.0%
!!! TTTTTTTGCATGTGTCTTCA+GGG + chr5.4:2968450-2968469 MS.gene058103:intron 30.0%
AAAATTGTGAGGGACCATAA+TGG - chr5.4:2969371-2969390 None:intergenic 35.0%
AAATGTAAACAATTCACCGG+TGG - chr5.4:2964430-2964449 None:intergenic 35.0%
AAATTGTGAGGGACCATAAT+GGG - chr5.4:2969370-2969389 None:intergenic 35.0%
AACAGAAGTAGATACTTCTG+CGG - chr5.4:2963909-2963928 None:intergenic 35.0%
AAGGAAAAACTTGTAGGCTA+GGG - chr5.4:2967662-2967681 None:intergenic 35.0%
AATATGGTGCTTATGAAGGT+GGG + chr5.4:2965901-2965920 MS.gene058103:intron 35.0%
ACAAAGAATATTACTCCCTC+CGG + chr5.4:2966483-2966502 MS.gene058103:intron 35.0%
ACATTAAACATGGACCTACA+AGG + chr5.4:2967431-2967450 MS.gene058103:intron 35.0%
ACTACACCATCACAGTTTAA+AGG - chr5.4:2966793-2966812 None:intergenic 35.0%
ACTAGAGTGAAAACCCATTA+TGG + chr5.4:2969354-2969373 MS.gene058103:intron 35.0%
AGATACCAGGACATTAAACA+TGG + chr5.4:2967421-2967440 MS.gene058103:intron 35.0%
ATATGATTGCAAGAGATACC+AGG + chr5.4:2967408-2967427 MS.gene058103:intron 35.0%
ATTTGACTAAAAGTGGCATG+TGG + chr5.4:2969568-2969587 MS.gene058103:intron 35.0%
CAAGAGTTTAACAACAAGTG+TGG + chr5.4:2964573-2964592 MS.gene058103:CDS 35.0%
CATTCTTAGACCATCTACAA+TGG + chr5.4:2965820-2965839 MS.gene058103:intron 35.0%
CTGGCCAAGTTAATTTAATG+AGG + chr5.4:2965311-2965330 MS.gene058103:intron 35.0%
CTTCAACTTCAACCAACAAA+AGG + chr5.4:2968028-2968047 MS.gene058103:intron 35.0%
CTTGTCTGTTGAATATGTTG+AGG - chr5.4:2967543-2967562 None:intergenic 35.0%
CTTTGTGACACCAATGAATA+TGG + chr5.4:2965885-2965904 MS.gene058103:intron 35.0%
GAATATGTTGAGGATCATAC+CGG - chr5.4:2967533-2967552 None:intergenic 35.0%
GAGGGAGTAATATTCTTTGT+TGG - chr5.4:2966483-2966502 None:intergenic 35.0%
GCAAAAAACACTAGTGATAG+AGG + chr5.4:2967970-2967989 MS.gene058103:intron 35.0%
GTGGTTAAGGAAAAACTTGT+AGG - chr5.4:2967668-2967687 None:intergenic 35.0%
TAACCGCTCAACTAATTGTT+CGG + chr5.4:2965356-2965375 MS.gene058103:intron 35.0%
TAAGGAAAAACTTGTAGGCT+AGG - chr5.4:2967663-2967682 None:intergenic 35.0%
TAGATGCCTTTAAACTGTGA+TGG + chr5.4:2966784-2966803 MS.gene058103:intron 35.0%
TCATAATTACATCGCCTTTC+TGG - chr5.4:2964180-2964199 None:intergenic 35.0%
TCCATTTGATCTTACCACAA+AGG - chr5.4:2969223-2969242 None:intergenic 35.0%
TCTCTTGGTTATAATCAACC+TGG + chr5.4:2968612-2968631 MS.gene058103:CDS 35.0%
TGATCTGAGTTCAATAAGGT+TGG + chr5.4:2964855-2964874 MS.gene058103:CDS 35.0%
TGGTATTTATTGTGAACAGG+TGG + chr5.4:2969588-2969607 MS.gene058103:intron 35.0%
TGGTTAGAGATAGGTATATC+TGG - chr5.4:2964007-2964026 None:intergenic 35.0%
TGTGTTAGAATCACTCCTTT+AGG - chr5.4:2964553-2964572 None:intergenic 35.0%
TTCTTAGACCATCTACAATG+GGG + chr5.4:2965822-2965841 MS.gene058103:intron 35.0%
TTCTTATATATAGGACCGGA+GGG + chr5.4:2966618-2966637 MS.gene058103:intron 35.0%
TTCTTATATATAGGACCGGA+GGG - chr5.4:2966637-2966618 None:intergenic 35.0%
TTGTTTGAAGATTTCAGCAC+TGG - chr5.4:2964293-2964312 None:intergenic 35.0%
TTTCTTATATATAGGACCGG+AGG + chr5.4:2966617-2966636 MS.gene058103:intron 35.0%
TTTCTTATATATAGGACCGG+AGG - chr5.4:2966636-2966617 None:intergenic 35.0%
! TACTTTTGTTCTCCATGTGA+TGG + chr5.4:2968187-2968206 MS.gene058103:intron 35.0%
! TAGAATTCCTCAAGCTGTTT+TGG + chr5.4:2964930-2964949 MS.gene058103:CDS 35.0%
!! ACCTTTCTGAATTTGCTGAT+CGG + chr5.4:2964056-2964075 MS.gene058103:CDS 35.0%
!! AGAATTCCTCAAGCTGTTTT+GGG + chr5.4:2964931-2964950 MS.gene058103:CDS 35.0%
!! CATATTCATTGGTGTCACAA+AGG - chr5.4:2965887-2965906 None:intergenic 35.0%
!! GATTTTTCGACATTGGAGAT+AGG - chr5.4:2964131-2964150 None:intergenic 35.0%
!! TATTCATTGGTGTCACAAAG+GGG - chr5.4:2965885-2965904 None:intergenic 35.0%
!! TGGACTAGTATGCTATTGAA+GGG + chr5.4:2966870-2966889 MS.gene058103:intron 35.0%
!! TTGGACTAGTATGCTATTGA+AGG + chr5.4:2966869-2966888 MS.gene058103:intron 35.0%
!!! TCAATAAGGTTGGTTTTGTC+TGG + chr5.4:2964865-2964884 MS.gene058103:CDS 35.0%
!!! TTTTTTGCATGTGTCTTCAG+GGG + chr5.4:2968451-2968470 MS.gene058103:intron 35.0%
AAAGTTCTTGACCCTGAAAC+TGG + chr5.4:2968585-2968604 MS.gene058103:CDS 40.0%
ACTAGTATGCTATTGAAGGG+AGG + chr5.4:2966873-2966892 MS.gene058103:intron 40.0%
ACTCCATTTGGGTGCTTAAA+TGG - chr5.4:2966418-2966437 None:intergenic 40.0%
AGACCGAACAATTAGTTGAG+CGG - chr5.4:2965362-2965381 None:intergenic 40.0%
ATCGAACGAAGAGGATATTC+CGG + chr5.4:2964465-2964484 MS.gene058103:CDS 40.0%
CAAACTCCGTCAAAAAGATC+AGG + chr5.4:2964363-2964382 MS.gene058103:CDS 40.0%
CAAACTTGACAACGTGACTT+AGG + chr5.4:2967842-2967861 MS.gene058103:intron 40.0%
CAAGAGAATGACCAGTTTCA+GGG - chr5.4:2968599-2968618 None:intergenic 40.0%
CATGAGTAATAGGAGAGAGA+GGG - chr5.4:2965941-2965960 None:intergenic 40.0%
CCACGTATACAAATTTCACC+AGG - chr5.4:2968633-2968652 None:intergenic 40.0%
CCTGGTGAAATTTGTATACG+TGG + chr5.4:2968630-2968649 MS.gene058103:CDS 40.0%
CCTGTTGTTCCTGAAGAAAA+TGG - chr5.4:2964526-2964545 None:intergenic 40.0%
CGTGGCCAACAAATTATGAA+AGG + chr5.4:2968648-2968667 MS.gene058103:CDS 40.0%
CTCCATTTGGGTGCTTAAAT+GGG - chr5.4:2966417-2966436 None:intergenic 40.0%
CTCTCTCTCCTATTACTCAT+GGG + chr5.4:2965940-2965959 MS.gene058103:intron 40.0%
GAATATGGTGCTTATGAAGG+TGG + chr5.4:2965900-2965919 MS.gene058103:intron 40.0%
GATTTCTGAATCGAACGAAG+AGG + chr5.4:2964456-2964475 MS.gene058103:CDS 40.0%
GCCAAAGCCCATTATTCTTT+GGG + chr5.4:2967728-2967747 MS.gene058103:intron 40.0%
GCCTTTGTGGTAAGATCAAA+TGG + chr5.4:2969219-2969238 MS.gene058103:CDS 40.0%
GGAACAACAGGATTACCTAA+AGG + chr5.4:2964535-2964554 MS.gene058103:CDS 40.0%
GTAGTATTTGTGAAGAGCTG+TGG + chr5.4:2966808-2966827 MS.gene058103:intron 40.0%
TAGGTCCATGTTTAATGTCC+TGG - chr5.4:2967429-2967448 None:intergenic 40.0%
TCAACACCACCTAACAAGTA+AGG + chr5.4:2967903-2967922 MS.gene058103:intron 40.0%
TCCAAATTAGGCATCCAGAA+AGG + chr5.4:2964163-2964182 MS.gene058103:CDS 40.0%
TCGACATTGGAGATAGGTTT+CGG - chr5.4:2964125-2964144 None:intergenic 40.0%
TTCCTCAATATCTTTCCTGC+AGG - chr5.4:2969667-2969686 None:intergenic 40.0%
TTCCTTAACCACGCTTGATT+AGG + chr5.4:2967676-2967695 MS.gene058103:intron 40.0%
TTCGAAGCAGTAGGTATGAA+GGG - chr5.4:2964035-2964054 None:intergenic 40.0%
TTGAAGTTGACACCATCACA+TGG - chr5.4:2968202-2968221 None:intergenic 40.0%
TTGAGGATCATACCGGTAAA+TGG - chr5.4:2967526-2967545 None:intergenic 40.0%
TTTCGAAGCAGTAGGTATGA+AGG - chr5.4:2964036-2964055 None:intergenic 40.0%
! AGAAAGGTTTTCGAAGCAGT+AGG - chr5.4:2964044-2964063 None:intergenic 40.0%
! CACCAACCTGATCTTTTTGA+CGG - chr5.4:2964372-2964391 None:intergenic 40.0%
! CCATTTTCTTCAGGAACAAC+AGG + chr5.4:2964523-2964542 MS.gene058103:CDS 40.0%
! CTTTGACCTTACTTGTTAGG+TGG - chr5.4:2967912-2967931 None:intergenic 40.0%
! GGTCCCTCACAATTTTCTTA+CGG + chr5.4:2969375-2969394 MS.gene058103:intron 40.0%
! TTCATTGCTGCTTCCATGAT+TGG + chr5.4:2964235-2964254 MS.gene058103:CDS 40.0%
! TTTGAGATAGGGACTTTGCT+TGG + chr5.4:2964745-2964764 MS.gene058103:CDS 40.0%
!! AGCTTTCTAGCTTTGCTCTT+AGG - chr5.4:2969693-2969712 None:intergenic 40.0%
!! AGTGATAGAGGTGTCCAATA+TGG + chr5.4:2967982-2968001 MS.gene058103:intron 40.0%
!! ATTTCAGCACTGGTGTAGAA+AGG - chr5.4:2964283-2964302 None:intergenic 40.0%
!! GTGATAGAGGTGTCCAATAT+GGG + chr5.4:2967983-2968002 MS.gene058103:intron 40.0%
!! TCCCAAAGAATAATGGGCTT+TGG - chr5.4:2967732-2967751 None:intergenic 40.0%
!!! ATTATTTTGAGGTGCTGGGT+TGG + chr5.4:2966334-2966353 MS.gene058103:intron 40.0%
AAACGAACGACGTGTACAGT+CGG + chr5.4:2966389-2966408 MS.gene058103:intron 45.0%
AACAAGTGTGGCACAACAAG+TGG + chr5.4:2964585-2964604 MS.gene058103:CDS 45.0%
AACATGGACCTACAAGGACA+AGG + chr5.4:2967437-2967456 MS.gene058103:intron 45.0%
AACCCATTCCCAACAAGTTC+AGG + chr5.4:2968528-2968547 MS.gene058103:CDS 45.0%
AAGAGAAAACAGCCACGTCA+AGG - chr5.4:2965391-2965410 None:intergenic 45.0%
ACAGCTGCATCTGCAATAGA+TGG - chr5.4:2969065-2969084 None:intergenic 45.0%
AGAGAAAACAGCCACGTCAA+GGG - chr5.4:2965390-2965409 None:intergenic 45.0%
AGATACTTCTGCGGTCTGTT+TGG - chr5.4:2963900-2963919 None:intergenic 45.0%
ATAGGTTTCGGCGTAGGTAT+AGG - chr5.4:2964113-2964132 None:intergenic 45.0%
ATCTTTCCTGCAGGAGACTT+TGG - chr5.4:2969658-2969677 None:intergenic 45.0%
ATGAAGGTGGGTGCTTGTAT+AGG + chr5.4:2965913-2965932 MS.gene058103:intron 45.0%
CAATGGTGCTTAATAGGGGA+AGG - chr5.4:2965851-2965870 None:intergenic 45.0%
CAATGTCGAAAAATCGCAGC+TGG + chr5.4:2964136-2964155 MS.gene058103:CDS 45.0%
CACAATGCAGCACTCCATTT+GGG - chr5.4:2966429-2966448 None:intergenic 45.0%
CCAAAGACATGGACAGTACT+GGG - chr5.4:2968497-2968516 None:intergenic 45.0%
CCAAGAGAATGACCAGTTTC+AGG - chr5.4:2968600-2968619 None:intergenic 45.0%
CCAGTACTGTCCATGTCTTT+GGG + chr5.4:2968495-2968514 MS.gene058103:CDS 45.0%
CCATGAGTAATAGGAGAGAG+AGG - chr5.4:2965942-2965961 None:intergenic 45.0%
CCTCTCTCTCCTATTACTCA+TGG + chr5.4:2965939-2965958 MS.gene058103:intron 45.0%
CCTGAAACTGGTCATTCTCT+TGG + chr5.4:2968597-2968616 MS.gene058103:CDS 45.0%
CTACTATTGATGAGGAGGGT+TGG + chr5.4:2968823-2968842 MS.gene058103:CDS 45.0%
CTCCGTCAAAAAGATCAGGT+TGG + chr5.4:2964367-2964386 MS.gene058103:CDS 45.0%
CTCCTGCAGGAAAGATATTG+AGG + chr5.4:2969662-2969681 MS.gene058103:CDS 45.0%
CTTCATGTCCTAATCAAGCG+TGG - chr5.4:2967687-2967706 None:intergenic 45.0%
CTTTGCAAAGCCCAAAGACA+TGG - chr5.4:2968508-2968527 None:intergenic 45.0%
GACCCATTTAAGCACCCAAA+TGG + chr5.4:2966412-2966431 MS.gene058103:intron 45.0%
GATCTTACCACAAAGGCAAC+AGG - chr5.4:2969216-2969235 None:intergenic 45.0%
GATTGAGAATTGGACAGCTC+TGG + chr5.4:2965292-2965311 MS.gene058103:intron 45.0%
GCAACTAAGCAGCAATTGAG+AGG - chr5.4:2967943-2967962 None:intergenic 45.0%
GCCGATCAGCAAATTCAGAA+AGG - chr5.4:2964060-2964079 None:intergenic 45.0%
GCCTTTCTGGATGCCTAATT+TGG - chr5.4:2964167-2964186 None:intergenic 45.0%
GGCCAAAGCCCATTATTCTT+TGG + chr5.4:2967727-2967746 MS.gene058103:intron 45.0%
GGGCCGTAAGAAAATTGTGA+GGG - chr5.4:2969381-2969400 None:intergenic 45.0%
GTCCTAATCAAGCGTGGTTA+AGG - chr5.4:2967681-2967700 None:intergenic 45.0%
GTCTGTTTGGCATCAACAGA+AGG - chr5.4:2963887-2963906 None:intergenic 45.0%
GTGGCAGCAACGATTAAACA+AGG - chr5.4:2964082-2964101 None:intergenic 45.0%
TCGAAGCAGTAGGTATGAAG+GGG - chr5.4:2964034-2964053 None:intergenic 45.0%
TCTCATTCTAGTACTCCCTC+CGG - chr5.4:2966636-2966655 None:intergenic 45.0%
TCTTCAAGCTCCTTCCCTAA+CGG - chr5.4:2964898-2964917 None:intergenic 45.0%
TGAAGTTCCTGTTGCCTTTG+TGG + chr5.4:2969206-2969225 MS.gene058103:CDS 45.0%
TGGGCCGTAAGAAAATTGTG+AGG - chr5.4:2969382-2969401 None:intergenic 45.0%
TGTTTAATCGTTGCTGCCAC+CGG + chr5.4:2964082-2964101 MS.gene058103:CDS 45.0%
TTACTCCTCCTTGTCCTTGT+AGG - chr5.4:2967448-2967467 None:intergenic 45.0%
TTTGCGAGAAACTCTTGACG+TGG + chr5.4:2965410-2965429 MS.gene058103:intron 45.0%
TTTGCTTGTAGCATAGCTGC+TGG + chr5.4:2966096-2966115 MS.gene058103:intron 45.0%
! AAGACCTTCAAGTTCAGCAG+GGG - chr5.4:2969030-2969049 None:intergenic 45.0%
! ACAGAAACATAAGGTGACGG+TGG + chr5.4:2964774-2964793 MS.gene058103:CDS 45.0%
! AGAAGACCTTCAAGTTCAGC+AGG - chr5.4:2969032-2969051 None:intergenic 45.0%
! CACATGAGCCTGAACTTGTT+GGG - chr5.4:2968539-2968558 None:intergenic 45.0%
! GAAGACCTTCAAGTTCAGCA+GGG - chr5.4:2969031-2969050 None:intergenic 45.0%
! GGCGTAGGTATAGGTTTTTC+CGG - chr5.4:2964104-2964123 None:intergenic 45.0%
! GTAGGTATAGGTTTTTCCGG+TGG - chr5.4:2964101-2964120 None:intergenic 45.0%
! TGGCTTCATACTGGTGATGT+TGG + chr5.4:2968843-2968862 MS.gene058103:CDS 45.0%
!! AGCACTGGTGTAGAAAGGAT+TGG - chr5.4:2964278-2964297 None:intergenic 45.0%
!! AGCCTGAACTTGTTGGGAAT+GGG - chr5.4:2968533-2968552 None:intergenic 45.0%
!! CAGCTGCGATTTTTCGACAT+TGG - chr5.4:2964138-2964157 None:intergenic 45.0%
!! GCAGCTGGTTTGTCCAAATT+AGG + chr5.4:2964151-2964170 MS.gene058103:CDS 45.0%
!! AAATCTAAAAAAAAAAAAAA+TGG + chr5.4:2966945-2966964 MS.gene058103:intron 5.0%
!!! AAATGATTTAAATTATTTTA+AGG - chr5.4:2968093-2968112 None:intergenic 5.0%
!!! AATGATTTAAATTATTTTAA+GGG - chr5.4:2968092-2968111 None:intergenic 5.0%
!!! TTTAAATTATTTTATTTGTT+AGG - chr5.4:2968143-2968162 None:intergenic 5.0%
AAACAGCCACGTCAAGGGTA+TGG - chr5.4:2965385-2965404 None:intergenic 50.0%
AACGAACGACGTGTACAGTC+GGG + chr5.4:2966390-2966409 MS.gene058103:intron 50.0%
ACAATTCACCGGTGGTTCGT+CGG - chr5.4:2964422-2964441 None:intergenic 50.0%
ACCTGTCCCAAAACAGCTTG+AGG - chr5.4:2964940-2964959 None:intergenic 50.0%
AGGCAAAAGGATGTTGCTGC+TGG + chr5.4:2969183-2969202 MS.gene058103:intron 50.0%
AGTGTGGCACAACAAGTGGA+CGG + chr5.4:2964589-2964608 MS.gene058103:CDS 50.0%
ATGCGGAGCCCATGAGTAAT+AGG - chr5.4:2965951-2965970 None:intergenic 50.0%
ATGGACCTACAAGGACAAGG+AGG + chr5.4:2967440-2967459 MS.gene058103:intron 50.0%
CCAACAAGTTCAGGCTCATG+TGG + chr5.4:2968537-2968556 MS.gene058103:CDS 50.0%
CCACAATGCAGCACTCCATT+TGG - chr5.4:2966430-2966449 None:intergenic 50.0%
CCACATGAGCCTGAACTTGT+TGG - chr5.4:2968540-2968559 None:intergenic 50.0%
CCCAAAGACATGGACAGTAC+TGG - chr5.4:2968498-2968517 None:intergenic 50.0%
CCCAGTACTGTCCATGTCTT+TGG + chr5.4:2968494-2968513 MS.gene058103:CDS 50.0%
CGAAGAGGATATTCCGGTAG+TGG + chr5.4:2964471-2964490 MS.gene058103:CDS 50.0%
CGAAGCAGTAGGTATGAAGG+GGG - chr5.4:2964033-2964052 None:intergenic 50.0%
CTATTGTGTGCACTGAGAGC+AGG + chr5.4:2964697-2964716 MS.gene058103:CDS 50.0%
GAAGGACTCCCCATTGTAGA+TGG - chr5.4:2965833-2965852 None:intergenic 50.0%
GATAACAACCGACGAACCAC+CGG + chr5.4:2964411-2964430 MS.gene058103:CDS 50.0%
GCAATTCCAAAGTCTCCTGC+AGG + chr5.4:2969649-2969668 MS.gene058103:CDS 50.0%
TCTGGATCGATCTCCACTAC+CGG - chr5.4:2964487-2964506 None:intergenic 50.0%
TGCATGTGTCTTCAGGGGTA+CGG + chr5.4:2968456-2968475 MS.gene058103:intron 50.0%
TTCGCCAACGCCAAAACCAA+CGG - chr5.4:2964814-2964833 None:intergenic 50.0%
TTGGAGATAGGTTTCGGCGT+AGG - chr5.4:2964119-2964138 None:intergenic 50.0%
! AGACCTTCAAGTTCAGCAGG+GGG - chr5.4:2969029-2969048 None:intergenic 50.0%
! GGTGTAGAAAGGATTGGCAG+TGG - chr5.4:2964272-2964291 None:intergenic 50.0%
! GTGGCGCTACCATTTTCTTC+AGG + chr5.4:2964514-2964533 MS.gene058103:CDS 50.0%
!! CCAAATGGAGTGCTGCATTG+TGG + chr5.4:2966427-2966446 MS.gene058103:intron 50.0%
!! GAGCCTGAACTTGTTGGGAA+TGG - chr5.4:2968534-2968553 None:intergenic 50.0%
!!! GGTAGGGACGCGCTTTTTTT+GGG - chr5.4:2967347-2967366 None:intergenic 50.0%
!!! TCCTCAAGCTGTTTTGGGAC+AGG + chr5.4:2964936-2964955 MS.gene058103:CDS 50.0%
AGATCAAACTCCGCCACCGT+CGG - chr5.4:2964841-2964860 None:intergenic 55.0%
AGCAGTAGGTATGAAGGGGG+AGG - chr5.4:2964030-2964049 None:intergenic 55.0%
AGGGGGAGGTGGTTAGAGAT+AGG - chr5.4:2964016-2964035 None:intergenic 55.0%
AGTAGGTATGAAGGGGGAGG+TGG - chr5.4:2964027-2964046 None:intergenic 55.0%
GGAGATCGATCCAGAAGACG+CGG + chr5.4:2964492-2964511 MS.gene058103:CDS 55.0%
GTGCACTGAGAGCAGGAAGT+GGG + chr5.4:2964704-2964723 MS.gene058103:CDS 55.0%
TGCACTGAGAGCAGGAAGTG+GGG + chr5.4:2964705-2964724 MS.gene058103:CDS 55.0%
TGTGCACTGAGAGCAGGAAG+TGG + chr5.4:2964703-2964722 MS.gene058103:CDS 55.0%
! ACATAAGGTGACGGTGGCGA+TGG + chr5.4:2964780-2964799 MS.gene058103:CDS 55.0%
! GGTGCTGGGTTGGAGAGATT+GGG + chr5.4:2966344-2966363 MS.gene058103:intron 55.0%
! TCAGGGGTACGGTATGACAG+AGG + chr5.4:2968467-2968486 MS.gene058103:intron 55.0%
! TGCTGCTTCCATGATTGGCG+CGG + chr5.4:2964240-2964259 MS.gene058103:CDS 55.0%
!! AGGTGCTGGGTTGGAGAGAT+TGG + chr5.4:2966343-2966362 MS.gene058103:intron 55.0%
!! GAGGAGGGTTGGCTTCATAC+TGG + chr5.4:2968834-2968853 MS.gene058103:CDS 55.0%
!! TGTCTGGTGCTGCACCGTTA+GGG + chr5.4:2964881-2964900 MS.gene058103:CDS 55.0%
!! TTGTCTGGTGCTGCACCGTT+AGG + chr5.4:2964880-2964899 MS.gene058103:CDS 55.0%
!!! CGGTAGGGACGCGCTTTTTT+TGG - chr5.4:2967348-2967367 None:intergenic 55.0%
!!! GGTTGTTCCGCCGTTGGTTT+TGG + chr5.4:2964801-2964820 MS.gene058103:CDS 55.0%
CGGTCTCCATACCCTTGACG+TGG + chr5.4:2965376-2965395 MS.gene058103:intron 60.0%
GATCGATCCAGAAGACGCGG+TGG + chr5.4:2964495-2964514 MS.gene058103:CDS 60.0%
GCCAACGCCAAAACCAACGG+CGG - chr5.4:2964811-2964830 None:intergenic 60.0%
GGGTACGGTATGACAGAGGC+AGG + chr5.4:2968471-2968490 MS.gene058103:CDS 60.0%
GTGCCCCCTGCTGAACTTGA+AGG + chr5.4:2969023-2969042 MS.gene058103:CDS 60.0%
!! TGGTGCTGCACCGTTAGGGA+AGG + chr5.4:2964885-2964904 MS.gene058103:CDS 60.0%
!!! TCCGCCGTTGGTTTTGGCGT+TGG + chr5.4:2964807-2964826 MS.gene058103:CDS 60.0%
GGCGATGGTTGTTCCGCCGT+TGG + chr5.4:2964795-2964814 MS.gene058103:CDS 65.0%
GGTTGCGACCGCGCCAATCA+TGG - chr5.4:2964251-2964270 None:intergenic 65.0%
GTTGGCGAAGAGTCCGACGG+TGG + chr5.4:2964825-2964844 MS.gene058103:CDS 65.0%
!! GGCGTTGGCGAAGAGTCCGA+CGG + chr5.4:2964822-2964841 MS.gene058103:CDS 65.0%
GGCGAAGAGTCCGACGGTGG+CGG + chr5.4:2964828-2964847 MS.gene058103:CDS 70.0%
GGTAGCGCCACCGCGTCTTC+TGG - chr5.4:2964505-2964524 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 2963869 2969720 2963869 ID=MS.gene058103
chr5.4 mRNA 2963869 2969720 2963869 ID=MS.gene058103.t1;Parent=MS.gene058103
chr5.4 exon 2963869 2964957 2963869 ID=MS.gene058103.t1.exon1;Parent=MS.gene058103.t1
chr5.4 CDS 2963869 2964957 2963869 ID=cds.MS.gene058103.t1;Parent=MS.gene058103.t1
chr5.4 exon 2968471 2968669 2968471 ID=MS.gene058103.t1.exon2;Parent=MS.gene058103.t1
chr5.4 CDS 2968471 2968669 2968471 ID=cds.MS.gene058103.t1;Parent=MS.gene058103.t1
chr5.4 exon 2968793 2968938 2968793 ID=MS.gene058103.t1.exon3;Parent=MS.gene058103.t1
chr5.4 CDS 2968793 2968938 2968793 ID=cds.MS.gene058103.t1;Parent=MS.gene058103.t1
chr5.4 exon 2969023 2969090 2969023 ID=MS.gene058103.t1.exon4;Parent=MS.gene058103.t1
chr5.4 CDS 2969023 2969090 2969023 ID=cds.MS.gene058103.t1;Parent=MS.gene058103.t1
chr5.4 exon 2969185 2969287 2969185 ID=MS.gene058103.t1.exon5;Parent=MS.gene058103.t1
chr5.4 CDS 2969185 2969287 2969185 ID=cds.MS.gene058103.t1;Parent=MS.gene058103.t1
chr5.4 exon 2969607 2969720 2969607 ID=MS.gene058103.t1.exon6;Parent=MS.gene058103.t1
chr5.4 CDS 2969607 2969720 2969607 ID=cds.MS.gene058103.t1;Parent=MS.gene058103.t1
Gene Sequence

>MS.gene058103

ATGTTGTCAGTAGCTCCTTCTGTTGATGCCAAACAGACCGCAGAAGTATCTACTTCTGTTTCTATACCTAAACTTGATAATTTTGAGGATGATTCTCTTTCTACCCAAACTACTCATATATTTAAATCAAAATTACCAGATATACCTATCTCTAACCACCTCCCCCTTCATACCTACTGCTTCGAAAACCTTTCTGAATTTGCTGATCGGCCTTGTTTAATCGTTGCTGCCACCGGAAAAACCTATACCTACGCCGAAACCTATCTCCAATGTCGAAAAATCGCAGCTGGTTTGTCCAAATTAGGCATCCAGAAAGGCGATGTAATTATGATTCTTCTACAAAACTCAGCTGAATTTGTTCTCTCTTTCATTGCTGCTTCCATGATTGGCGCGGTCGCAACCACTGCCAATCCTTTCTACACCAGTGCTGAAATCTTCAAACAAATAAAAGCTTCTGAAACAAAACTCATCATTACACAAGCAATGTACGTTGACAAACTCCGTCAAAAAGATCAGGTTGGTGTAGAATTTGACTTTAAGGTGATAACAACCGACGAACCACCGGTGAATTGTTTACATTTTTCGGTGATTTCTGAATCGAACGAAGAGGATATTCCGGTAGTGGAGATCGATCCAGAAGACGCGGTGGCGCTACCATTTTCTTCAGGAACAACAGGATTACCTAAAGGAGTGATTCTAACACACAAGAGTTTAACAACAAGTGTGGCACAACAAGTGGACGGAGAGAATCCAAATCTATATTTAACAACAGAAGATGTTCTTCTTTGTGTTCTTCCATTGTTTCATATATTTTCTCTCAACAGTGTGCTATTGTGTGCACTGAGAGCAGGAAGTGGGGTTTTGTTGATGCATAAATTTGAGATAGGGACTTTGCTTGGTCTTATACAGAAACATAAGGTGACGGTGGCGATGGTTGTTCCGCCGTTGGTTTTGGCGTTGGCGAAGAGTCCGACGGTGGCGGAGTTTGATCTGAGTTCAATAAGGTTGGTTTTGTCTGGTGCTGCACCGTTAGGGAAGGAGCTTGAAGAAACTCTTCATAATAGAATTCCTCAAGCTGTTTTGGGACAGGTAAAATTCTTTCTTTTCTTTTCTATGATTCTGTTTTTGTCTTTTACGTGTTTTCAGTTAAATTCTAAGTTTTTCAATCAAAGTAAAAAACTATCCTATTTATAAAAGAAACTTAAGTTAATAAAATGGTTAAAAAATTGAATCTCATACATCAATTTTTTTTTTCATTTTAATATCTCTTATAAATAGGATCCAAGTGATCAGATTATACACATTTACTCCCTCCAATCCTATTTGTAAGATACATTTAATTTTTTTTATTCATTACATAAATAATGTATTTAGTCTATATTCTATATCAAGTACATTAATTAGTCAATGAATATAATTATGTGATTGAGAATTGGACAGCTCTGGCCAAGTTAATTTAATGAGGGCATTCTAGTCATTAGAAACATTAACCGCTCAACTAATTGTTCGGTCTCCATACCCTTGACGTGGCTGTTTTCTCTTTTGCGAGAAACTCTTGACGTGGCTTACATCAATATCAATACAAATTTTAACTTTTTAAGAAAAAATAATATACCGTATACTTTTACTCCTTTCTGTTCTATTTATGAGAGAAAGTTAGGTCAATAAAAGTTAATGTATTTGAACTTAATTTTTAATTAGATACATTAACTTTTGTTGACCCAAATTTCTCTTATAAATAGGACCGAAGAGAGTATTTTCTATAAAATACCTTATCAGAAGTAATTTTACAAAAGTTTCATGCATGTTTAGCCTTCCATTTGACTTTTTATGTATATATATGTTTAAGTTCATACATCAGAAAATAAGGAGCTAAATATGAATTAAGTTTTAATAAGAATTGAATTTGATAAGAAAATATTTTATAGTATGAGCTAAAATATATATCTTACATTCTTAGACCATCTACAATGGGGAGTCCTTCCCCTATTAAGCACCATTGTAAATAAGTATCCCCTTTGTGACACCAATGAATATGGTGCTTATGAAGGTGGGTGCTTGTATAGGCACCCTCTCTCTCCTATTACTCATGGGCTCCGCATGTACATTTAATTCTATTTTTTTATATATTTAATTATTGTATTATTTTGATATTAAAAAATAATTATATAATAGTTGTAAATAATAGTTGAATTTGATTCCCTAAAAAAAAATAGTTGAATTTGAATTTGCTTGTAGCATAGCTGCTGGAAATTTTAGTTGACATTTCTTGTATTCAATTACTCCTTAAAAAAAAAAAAATCTGTACTTAATTACTTTATTTTTTCCTTCTTTGAATTTGTTTGTTTTTTTAATAATTTATAATTAAATTATTTCAATATTTTAAAATTATATAATTATGAATGAGTATAAAAATTATTGTAAAAATGTAATGATATAGAGTTATTGCTGGGACCCAATTAATAATTATTTTGAGGTGCTGGGTTGGAGAGATTGGGTGCTTATTACGTATTAATTATAAAACGAACGACGTGTACAGTCGGGACCCATTTAAGCACCCAAATGGAGTGCTGCATTGTGGATAGTCTTACCTTCCTCAAAAAATATTTCACCAACAAAGAATATTACTCCCTCCGGTCCTATATATAAGAAAATATTCTTTTTTTAAATACATTTAATAATCAATGTATTTAGTCTTCATTGTAAACGAGATACATTAATTATTCAATGTATCTAAAAAAAGAATCTTTTCTTATATATAGGACCGGAGGGAGTACTAGAATGAGATATTATAACTGTTTCTCACAATTAAGTATTTTGATAGTAATTTAATATGGATAATATGTCAGCACAAAAGAAATTATAGATAAATGACTTCAGCTGGTTCCTATAATTACTTATTAATAGAGGAGGACTAGATGCCTTTAAACTGTGATGGTGTAGTATTTGTGAAGAGCTGTGGCATGTTTTGTGCCTTGTCTTTGCAATTATGTACAAATTTTGGACTAGTATGCTATTGAAGGGAGGAATAATAATATGAGAAATGTTAATAAGTGTACTTGATGTATTTGTTTAGAAATCTAAAAAAAAAAAAAATGGAGTTGTATTCAACATATAGAAACTTCAAAAAGAAACATTTTTTACATAAAATTTATAAACTATTTTCTCTTTGAATCATTAATAAGTGTTCTAACTTGTTAACATACCCCTAATAATATTTACCTTTCTCTTAATTTTTCTGAAACGATTGAAGACAACTGAAAATTTGAAAGGAAGTAGCACTTTTTTTTTTTACGTGAAATGAAGTAGCACTTTACTATTTAACTAGTAAATACAAATATTGTATTTTTAATAAATACATTAATTAACCGATCGTAAAAAAAAGGGTAAAAAATACATTAGTTTTTTTTACTTTGCCAAACAAAACATTAATATTTGTTTAACGTTTACGTAAATTAATTTTTTTAGACAATGTCCCAAAAAAAGCGCGTCCCTACCGACATATATAATTAATGCTTATATATTCGCATCATCGATGAATATGATTGCAAGAGATACCAGGACATTAAACATGGACCTACAAGGACAAGGAGGAGTAAATACTTTCAGTATTTCTTCTTCTTTTGTTGGTAAAATCTTTGCAATTATTTCTAACCATTTACCGGTATGATCCTCAACATATTCAACAGACAAGAATGTTCTTTTAGCGTCCTTCAAAAAAAAAGTTCTTTTAATGAAAAAATTAGTAATTAAATAAGATTCTAAACATATTTTGGTTAAATGATTTAGACCCTAGCCTACAAGTTTTTCCTTAACCACGCTTGATTAGGACATGAAGTAGTTAAACTTTTATAATACGGCCAAAGCCCATTATTCTTTGGGATTCTTTAACAAAATTTTGTTGTACAAAGAATATAATGTTCCTTCAAAAAAACAAAAAGAATATAATGTATTTCGTATTTTTGCTTAGGGTCAAACTTGACAACGTGACTTAGGTGTATATACAATATTGGGTTAGTTTATCTTGTTTAGTTTCAACACCACCTAACAAGTAAGGTCAAAGTTTTGGTGCCTCTCAATTGCTGCTTAGTTGCCAAAATTGCAAAAAACACTAGTGATAGAGGTGTCCAATATGGGCTATAGAAATGTTCATTAAATTCTTCAACTTCAACCAACAAAAGGAATTTTTATAATAACTTTAATAATGTAAAATAAATTCACCCTTAAAATAATTTAAATCATTTTCAGACAGTTTTCCAATTCATAAGCAACCTAACAAATAAAATAATTTAAACTTAGAGAACAAATTAATAAGATGTACTTTTGTTCTCCATGTGATGGTGTCAACTTCAAAATTTATAGCTGAAAAACATCCTATAAAATAAAGAGAGTTATGACAGAACCTAAGAAAATCAAAAATAAAAAGAATAGGATTGGGACAAAACCTAGTTAGATTTGTGAACCTAAATTAAACATGTGTCTGGTCTATATAACCAAAACTTTTTTTTAATTACCGGTTATTCAATGAATCTGAAAGAAGATTATTTAACTGGAGCATTTGTTTTTTTTTTTTAAATTGAATTTTTTTGCATGTGTCTTCAGGGGTACGGTATGACAGAGGCAGGCCCAGTACTGTCCATGTCTTTGGGCTTTGCAAAGAACCCATTCCCAACAAGTTCAGGCTCATGTGGCACTGTTGTAAGAAATGCAGAGCTCAAAGTTCTTGACCCTGAAACTGGTCATTCTCTTGGTTATAATCAACCTGGTGAAATTTGTATACGTGGCCAACAAATTATGAAAGGTATATATTATATAAATGCAATATAACCTTATGATAAATATTTTTCTTCCTAGTAATATTCTTTCTTTCATGATATTATGATTTTTTTTAATTATTTTCTAATCATACATTTCAATATTTTAGGATATTTGAATGATGAGAATGCAACAAAAACTACTATTGATGAGGAGGGTTGGCTTCATACTGGTGATGTTGGCTATATAGATGACAATGATGAGATTTTCATAGTTGATAGAGTGAAAGAACTCATCAAATTCAAAGGCTTCCAAGTATGTATTTCATTAATTTATGAATACATTTAAATTTACCTCATTAAATAAAATTTATGCTTAATTATTATTTTGTTATGTTAGGTGCCCCCTGCTGAACTTGAAGGTCTTCTTGTAAGTCATCCATCTATTGCAGATGCAGCTGTTGTCCCGTAAGTATCTTAATTAATTTATTTGAATCTTGATAATGTCATTGTTTATATATAAATAATAATTAATCTCTAATGGAACCAAATATTTTAACAGGCAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGAAATGATCTAACTGAAGAGATTGTAAAGGACTTTATAGCTAAACAGGTAATATAAGCATTGCTATATACATTAATTGTGTTATTTGATACAAAGAAATTAAAATTCTACTTGACTAGAGTGAAAACCCATTATGGTCCCTCACAATTTTCTTACGGCCCAATTCTGTCTCTGACTAAAATAAATTTCAAATTAGTCCATTATAATAGAAAGACCGATTTGTTAAGGACTAAATTGTGTCATCGGAAAATTGTGAGAGACTAAAACGAACCTTCATTCTCATTTGATTGATTAAGATCAACATTTTTAAAAGACTTTGAACTCCAATATTTGACTAAAAGTGGCATGTGGTATTTATTGTGAACAGGTGGTATTTTATAAAAGACTGCACAAAGTATATTTTGTTCATGCAATTCCAAAGTCTCCTGCAGGAAAGATATTGAGGAAAGACCTAAGAGCAAAGCTAGAAAGCTCCACCTAA
Protein sequence

>MS.gene058103.t1

MLSVAPSVDAKQTAEVSTSVSIPKLDNFEDDSLSTQTTHIFKSKLPDIPISNHLPLHTYCFENLSEFADRPCLIVAATGKTYTYAETYLQCRKIAAGLSKLGIQKGDVIMILLQNSAEFVLSFIAASMIGAVATTANPFYTSAEIFKQIKASETKLIITQAMYVDKLRQKDQVGVEFDFKVITTDEPPVNCLHFSVISESNEEDIPVVEIDPEDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSGVLLMHKFEIGTLLGLIQKHKVTVAMVVPPLVLALAKSPTVAEFDLSSIRLVLSGAAPLGKELEETLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKNPFPTSSGSCGTVVRNAELKVLDPETGHSLGYNQPGEICIRGQQIMKGYLNDENATKTTIDEEGWLHTGDVGYIDDNDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGNDLTEEIVKDFIAKQVVFYKRLHKVYFVHAIPKSPAGKILRKDLRAKLESST