AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09107

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09107.t1 MTR_4g057730 95.257 506 24 0 1 506 1 506 0.0 993
MS.gene09107.t1 MTR_4g057730 95.541 471 21 0 1 471 1 471 0.0 927
MS.gene09107.t1 MTR_4g057730 95.768 449 19 0 1 449 1 449 0.0 884
MS.gene09107.t1 MTR_2g095510 71.344 506 142 2 1 506 1 503 0.0 758
MS.gene09107.t1 MTR_2g095510 69.710 449 133 2 1 449 1 446 0.0 659
MS.gene09107.t1 MTR_1g063110 59.281 501 197 6 12 506 13 512 0.0 575
MS.gene09107.t1 MTR_1g063120 57.957 509 195 6 12 506 13 516 0.0 563
MS.gene09107.t1 MTR_1g026310 44.423 511 274 5 3 506 17 524 3.76e-141 421
MS.gene09107.t1 MTR_8g039720 45.793 511 262 6 9 507 21 528 1.16e-140 419
MS.gene09107.t1 MTR_1g090737 43.275 513 276 8 3 506 24 530 8.30e-134 402
MS.gene09107.t1 MTR_2g105570 41.304 506 285 8 11 507 12 514 1.14e-131 396
MS.gene09107.t1 MTR_5g007640 42.745 510 267 8 11 507 55 552 9.14e-128 387
MS.gene09107.t1 MTR_4g128337 41.517 501 285 5 11 507 17 513 1.18e-124 378
MS.gene09107.t1 MTR_5g027480 41.245 514 279 10 4 506 18 519 6.17e-124 376
MS.gene09107.t1 MTR_4g005750 40.476 504 286 8 11 507 11 507 3.78e-121 369
MS.gene09107.t1 MTR_3g088870 41.529 484 263 6 30 506 52 522 1.00e-117 360
MS.gene09107.t1 MTR_5g027500 40.000 520 285 11 6 506 21 532 1.41e-114 352
MS.gene09107.t1 MTR_3g088880 40.825 485 262 9 30 506 53 520 1.35e-113 350
MS.gene09107.t1 MTR_1g073180 42.159 491 253 10 26 506 29 498 3.25e-112 345
MS.gene09107.t1 MTR_1g073180 42.159 491 253 10 26 506 51 520 3.48e-112 345
MS.gene09107.t1 MTR_4g077900 41.071 448 250 6 67 506 1 442 7.57e-111 340
MS.gene09107.t1 MTR_3g460770 35.438 491 303 7 21 505 22 504 1.76e-109 339
MS.gene09107.t1 MTR_1g026470 40.665 391 222 5 3 386 17 404 7.12e-85 270
MS.gene09107.t1 MTR_1g026430 40.722 388 220 5 3 383 17 401 3.58e-84 269
MS.gene09107.t1 MTR_3g035130 32.104 461 291 13 55 506 32 479 1.46e-48 177
MS.gene09107.t1 MTR_1569s0010 27.701 509 328 9 35 511 4 504 1.13e-47 174
MS.gene09107.t1 MTR_3g035130 33.180 434 268 13 55 479 32 452 3.05e-47 172
MS.gene09107.t1 MTR_0803s0020 27.726 541 339 16 8 530 215 721 1.15e-45 174
MS.gene09107.t1 MTR_3g064420 26.223 511 324 11 27 498 14 510 2.46e-38 149
MS.gene09107.t1 MTR_4g057755 86.301 73 10 0 398 470 46 118 2.69e-38 137
MS.gene09107.t1 MTR_4g057755 78.333 60 12 1 222 281 1 59 2.18e-23 96.3
MS.gene09107.t1 MTR_2g044180 27.519 516 312 18 23 497 16 510 4.37e-38 148
MS.gene09107.t1 MTR_5g008820 26.984 504 330 14 27 506 14 503 6.27e-38 147
MS.gene09107.t1 MTR_4g121600 26.577 523 331 19 23 506 16 524 1.61e-35 141
MS.gene09107.t1 MTR_5g008800 27.660 517 312 16 27 506 14 505 1.75e-35 140
MS.gene09107.t1 MTR_5g076220 27.692 520 302 15 23 498 10 499 3.68e-35 140
MS.gene09107.t1 MTR_2g044180 31.884 345 190 14 181 497 92 419 5.07e-34 135
MS.gene09107.t1 MTR_8g074040 24.903 518 335 13 23 506 52 549 2.76e-33 135
MS.gene09107.t1 MTR_4g011790 28.329 353 221 10 180 506 217 563 4.08e-32 131
MS.gene09107.t1 MTR_4g011790 28.329 353 221 10 180 506 217 563 7.11e-32 130
MS.gene09107.t1 MTR_2g030240 26.494 502 323 12 30 499 8 495 1.84e-31 129
MS.gene09107.t1 MTR_5g076240 26.499 517 311 18 23 498 10 498 2.92e-31 128
MS.gene09107.t1 MTR_4g013210 29.003 331 210 8 189 500 70 394 1.43e-30 125
MS.gene09107.t1 MTR_4g013210 29.003 331 210 8 189 500 222 546 1.91e-30 126
MS.gene09107.t1 MTR_4g011790 27.348 362 222 11 180 506 217 572 5.67e-30 125
MS.gene09107.t1 MTR_1g104810 29.909 331 159 13 186 460 256 569 5.81e-29 122
MS.gene09107.t1 MTR_1g104810 29.607 331 160 13 186 460 189 502 6.43e-29 122
MS.gene09107.t1 MTR_5g076200 25.947 528 323 15 23 506 10 513 1.96e-28 120
MS.gene09107.t1 MTR_5g023730 24.324 518 338 17 27 510 16 513 2.24e-27 116
MS.gene09107.t1 MTR_8g074120 25.740 338 217 8 189 506 137 460 3.06e-27 115
MS.gene09107.t1 MTR_7g084850 24.074 486 314 11 54 496 202 675 1.05e-26 115
MS.gene09107.t1 MTR_0161s0050 25.191 524 334 13 23 506 10 515 6.22e-26 112
MS.gene09107.t1 MTR_4g013210 26.959 319 191 9 189 500 70 353 1.95e-25 109
MS.gene09107.t1 MTR_4g013210 26.959 319 191 9 189 500 222 505 3.45e-25 110
MS.gene09107.t1 MTR_1g026350 44.776 134 71 2 3 135 17 148 4.34e-25 102
MS.gene09107.t1 MTR_2g030240 27.246 334 207 8 193 499 77 401 1.85e-24 107
MS.gene09107.t1 MTR_1g034360 24.466 515 287 20 32 464 49 543 3.05e-24 107
MS.gene09107.t1 MTR_8g074040 23.462 439 294 10 97 506 6 431 3.12e-24 106
MS.gene09107.t1 MTR_5g009360 28.141 398 208 16 133 465 35 419 1.75e-23 104
MS.gene09107.t1 MTR_5g009360 27.015 459 244 18 75 465 110 545 2.32e-23 105
MS.gene09107.t1 MTR_7g109830 28.443 334 179 14 189 469 221 547 1.99e-22 102
MS.gene09107.t1 MTR_1g086600 28.090 356 177 15 189 474 243 589 5.24e-22 100
MS.gene09107.t1 MTR_5g009350 25.591 465 253 18 75 470 110 550 6.21e-22 100
MS.gene09107.t1 MTR_5g009350 25.652 460 249 18 75 465 110 545 1.53e-21 99.0
MS.gene09107.t1 MTR_5g009350 25.652 460 249 18 75 465 110 545 1.80e-21 99.0
MS.gene09107.t1 MTR_5g009350 25.652 460 249 18 75 465 110 545 2.17e-21 99.0
MS.gene09107.t1 MTR_4g068670 23.035 547 304 22 3 464 27 541 8.26e-21 97.1
MS.gene09107.t1 MTR_3g084470 32.487 197 109 5 332 506 469 663 3.56e-20 95.1
MS.gene09107.t1 MTR_3g084470 26.695 236 147 8 35 247 83 315 7.43e-13 72.0
MS.gene09107.t1 MTR_1054s0020 24.313 473 328 13 28 492 269 719 4.32e-20 95.1
MS.gene09107.t1 MTR_8g083170 36.257 171 92 4 311 470 459 623 6.11e-20 94.4
MS.gene09107.t1 MTR_4g013210 26.978 278 161 9 189 459 222 464 2.52e-19 91.7
MS.gene09107.t1 MTR_8g099420 28.701 331 170 15 186 460 221 541 2.54e-19 92.4
MS.gene09107.t1 MTR_3g084450 28.972 214 120 5 337 527 270 474 1.88e-18 89.0
MS.gene09107.t1 MTR_3g084450 28.972 214 120 5 337 527 478 682 2.23e-18 89.4
MS.gene09107.t1 MTR_4g013210 28.992 238 145 7 189 408 222 453 1.19e-15 80.1
MS.gene09107.t1 MTR_3g088890 40.000 70 42 0 444 513 10 79 5.16e-15 71.2
MS.gene09107.t1 MTR_1g030290 33.918 171 86 10 312 466 426 585 1.05e-12 71.2
MS.gene09107.t1 MTR_2g098490 24.534 322 193 11 182 464 640 950 1.68e-12 71.2
MS.gene09107.t1 MTR_1586s0010 21.067 356 255 8 63 399 78 426 2.24e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09107.t1 AT4G05160 67.059 510 162 2 1 506 1 508 0.0 715
MS.gene09107.t1 AT1G20510 44.808 520 253 8 3 506 7 508 1.55e-143 426
MS.gene09107.t1 AT3G21240 41.535 508 280 8 9 507 20 519 1.15e-130 394
MS.gene09107.t1 AT1G65060 42.095 506 274 8 11 507 34 529 1.29e-129 391
MS.gene09107.t1 AT1G20500 43.133 517 266 8 3 506 13 514 5.46e-129 389
MS.gene09107.t1 AT1G20510 43.918 485 238 8 3 471 7 473 9.80e-128 383
MS.gene09107.t1 AT1G20480 42.248 516 278 10 2 506 23 529 2.97e-125 380
MS.gene09107.t1 AT5G38120 41.459 521 270 10 3 507 14 515 1.08e-123 374
MS.gene09107.t1 AT5G38120 41.538 520 269 10 3 506 14 514 4.07e-123 374
MS.gene09107.t1 AT4G19010 41.131 513 270 11 10 506 30 526 1.59e-122 373
MS.gene09107.t1 AT5G63380 41.459 521 273 12 10 512 22 528 1.87e-122 373
MS.gene09107.t1 AT1G51680 40.504 516 291 7 2 506 15 525 1.92e-122 372
MS.gene09107.t1 AT1G51680 40.426 517 292 7 2 507 15 526 3.49e-122 372
MS.gene09107.t1 AT3G21240 41.015 473 262 8 9 472 20 484 3.62e-116 354
MS.gene09107.t1 AT3G21240 41.015 473 262 8 9 472 20 484 3.62e-116 354
MS.gene09107.t1 AT1G20510 42.549 463 232 8 3 449 7 451 4.35e-115 350
MS.gene09107.t1 AT3G21230 38.760 516 295 7 9 509 26 535 3.15e-113 349
MS.gene09107.t1 AT3G21230 38.986 513 292 8 9 506 26 532 3.48e-113 348
MS.gene09107.t1 AT1G51680 40.417 480 270 7 2 470 15 489 4.65e-109 336
MS.gene09107.t1 AT1G65060 41.333 450 245 8 11 451 34 473 3.39e-108 333
MS.gene09107.t1 AT5G38120 40.825 485 252 10 3 471 14 479 6.54e-108 332
MS.gene09107.t1 AT5G38120 40.825 485 252 10 3 471 14 479 6.54e-108 332
MS.gene09107.t1 AT1G62940 36.200 500 302 8 11 503 12 501 2.59e-105 328
MS.gene09107.t1 AT3G21230 39.203 477 269 7 9 470 26 496 3.18e-102 318
MS.gene09107.t1 AT1G20490 38.106 433 236 11 3 419 13 429 3.03e-84 270
MS.gene09107.t1 AT1G20490 38.106 433 236 11 3 419 13 429 3.03e-84 270
MS.gene09107.t1 AT3G21230 35.381 407 242 7 9 400 26 426 4.74e-63 214
MS.gene09107.t1 AT3G48990 30.642 483 296 15 41 506 18 478 1.56e-48 177
MS.gene09107.t1 AT1G77240 27.947 526 330 17 19 510 3 513 1.65e-44 166
MS.gene09107.t1 AT1G65890 25.626 519 341 15 18 505 5 509 2.21e-41 158
MS.gene09107.t1 AT1G65880 24.903 514 344 14 18 501 5 506 4.96e-41 157
MS.gene09107.t1 AT1G30520 28.412 447 289 13 64 485 42 482 2.25e-36 143
MS.gene09107.t1 AT1G30520 28.412 447 289 13 64 485 42 482 2.25e-36 143
MS.gene09107.t1 AT1G66120 26.667 495 318 13 23 486 10 490 3.72e-36 143
MS.gene09107.t1 AT1G21540 26.604 530 337 18 19 510 3 518 4.96e-36 142
MS.gene09107.t1 AT3G16170 25.147 509 315 15 34 500 72 556 1.45e-32 132
MS.gene09107.t1 AT1G76290 26.415 477 322 15 27 485 14 479 2.08e-32 131
MS.gene09107.t1 AT1G21530 25.379 528 345 21 19 510 3 517 4.74e-32 130
MS.gene09107.t1 AT5G27600 26.809 470 258 17 55 457 119 569 8.95e-32 131
MS.gene09107.t1 AT1G21530 25.989 531 336 24 19 510 3 515 1.17e-31 129
MS.gene09107.t1 AT1G20560 24.809 524 322 16 27 506 16 511 1.80e-31 129
MS.gene09107.t1 AT1G68270 24.561 513 314 16 23 505 10 479 1.81e-31 129
MS.gene09107.t1 AT5G16340 26.465 529 331 20 23 514 10 517 7.54e-31 127
MS.gene09107.t1 AT3G16910 24.953 533 324 20 23 508 18 521 9.86e-30 124
MS.gene09107.t1 AT5G16370 25.098 510 344 15 23 509 10 504 1.62e-29 123
MS.gene09107.t1 AT1G30520 26.498 434 285 14 64 472 42 466 6.27e-29 120
MS.gene09107.t1 AT1G30520 26.498 434 285 14 64 472 42 466 6.27e-29 120
MS.gene09107.t1 AT2G17650 24.309 543 342 18 12 506 45 566 7.93e-29 121
MS.gene09107.t1 AT1G75960 23.269 520 365 12 15 510 4 513 8.05e-27 115
MS.gene09107.t1 AT1G64400 25.660 530 299 25 7 457 25 538 8.45e-26 112
MS.gene09107.t1 AT5G36880 24.230 487 312 14 54 496 147 620 1.49e-25 112
MS.gene09107.t1 AT5G36880 24.230 487 312 14 54 496 147 620 1.49e-25 112
MS.gene09107.t1 AT5G36880 24.230 487 312 14 54 496 147 620 1.49e-25 112
MS.gene09107.t1 AT5G36880 24.230 487 312 14 54 496 147 620 1.49e-25 112
MS.gene09107.t1 AT5G36880 24.230 487 312 14 54 496 197 670 2.04e-25 111
MS.gene09107.t1 AT5G36880 24.295 461 292 14 54 470 147 594 7.80e-25 109
MS.gene09107.t1 AT1G20560 26.301 346 209 9 187 506 108 433 8.79e-25 108
MS.gene09107.t1 AT3G05970 29.747 316 173 10 186 457 259 569 5.25e-24 107
MS.gene09107.t1 AT2G47240 28.297 364 186 16 179 474 150 506 4.55e-23 103
MS.gene09107.t1 AT2G47240 28.297 364 186 16 179 474 209 565 5.25e-23 103
MS.gene09107.t1 AT2G47240 28.297 364 186 16 179 474 209 565 5.25e-23 103
MS.gene09107.t1 AT2G47240 28.297 364 186 16 179 474 209 565 5.25e-23 103
MS.gene09107.t1 AT1G49430 29.129 333 175 13 186 464 221 546 8.49e-22 100
MS.gene09107.t1 AT4G23850 23.417 521 304 18 7 457 43 538 3.44e-20 95.1
MS.gene09107.t1 AT4G11030 27.457 346 183 12 168 457 205 538 1.33e-18 90.1
MS.gene09107.t1 AT3G23790 30.804 224 132 6 283 495 429 640 6.20e-18 88.2
MS.gene09107.t1 AT3G23790 25.098 255 168 9 14 247 68 320 7.45e-12 68.9
MS.gene09107.t1 AT4G14070 33.166 199 116 5 283 470 445 637 6.87e-18 88.2
MS.gene09107.t1 AT4G14070 24.229 227 149 8 42 247 112 336 5.66e-11 65.9
MS.gene09107.t1 AT1G77590 34.104 173 89 9 312 469 276 438 4.19e-13 72.4
MS.gene09107.t1 AT1G77590 34.104 173 89 9 312 469 422 584 6.34e-13 72.0
MS.gene09107.t1 AT2G04350 33.766 154 80 7 334 473 472 617 6.36e-11 65.9
MS.gene09107.t1 AT2G04350 33.766 154 80 7 334 473 472 617 6.36e-11 65.9

Find 161 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGAGAAGTTGAGAGTT+TGG 0.185010 4.1:+40673441 None:intergenic
TTCACTTTGCTCCATAATTC+AGG 0.226686 4.1:+40673197 None:intergenic
GGAGGACTAGAGAAGGTCTT+AGG 0.233857 4.1:+40673555 None:intergenic
TCAGCTGGAATGTTGGTTTC+AGG 0.248160 4.1:-40671516 MS.gene09107:CDS
TCAGAAGTTTATTGCTAATC+AGG 0.249995 4.1:-40670168 MS.gene09107:intron
ACGACAGCATCTTGTATTTC+AGG 0.265567 4.1:+40670496 None:intergenic
TCCTGCAATTATTATCAATT+CGG 0.268313 4.1:-40673156 MS.gene09107:CDS
AAGGAGAGGTTTGGATTGTT+TGG 0.278793 4.1:+40673533 None:intergenic
TCATCACTGTCCCTGAATTA+TGG 0.292627 4.1:-40673208 MS.gene09107:CDS
GATAGGCTCGACAAGCTATA+TGG 0.301545 4.1:+40668330 None:intergenic
AGAGTTGGGCCATGGTATTT+TGG 0.315634 4.1:-40668458 MS.gene09107:CDS
ACCTCATGTTGCTATTTATC+AGG 0.320617 4.1:-40671872 MS.gene09107:intron
TTACCGATGTTTCATGTGTT+TGG 0.321450 4.1:-40672147 MS.gene09107:CDS
CCTGCAATTATTATCAATTC+GGG 0.330356 4.1:-40673155 MS.gene09107:intron
TTGAGAGAAGTTGAGAGTTT+GGG 0.331260 4.1:+40673442 None:intergenic
GATCAAATACAAAGGTTATC+AGG 0.342076 4.1:-40670821 MS.gene09107:intron
GGGTCTGGTGCTGCCCCTCT+TGG 0.354676 4.1:-40671928 MS.gene09107:CDS
AGGAGAGGTTTGGATTGTTT+GGG 0.356411 4.1:+40673534 None:intergenic
GGGACAGTGATGACTAGTTT+AGG 0.357700 4.1:+40673218 None:intergenic
AGCGTAGGTATTCGTCATTC+TGG 0.360952 4.1:-40671540 MS.gene09107:CDS
CCCGAATTGATAATAATTGC+AGG 0.361327 4.1:+40673155 None:intergenic
TTCAATCAACGCCTCAAAAC+TGG 0.361379 4.1:+40672365 None:intergenic
TATCTAATAGGTAATGTAAC+AGG 0.362428 4.1:-40672405 MS.gene09107:intron
GATGGGGAGGTTTGAGTTAG+AGG 0.368639 4.1:-40672073 MS.gene09107:CDS
TTTCTTCGTTGAAGAGTATT+GGG 0.369485 4.1:-40671948 MS.gene09107:CDS
AATGAGACTAAGGAGAGGTT+TGG 0.371185 4.1:+40673524 None:intergenic
CCCTCTTGGGAAGGAATTGA+TGG 0.382279 4.1:-40671914 MS.gene09107:CDS
ACAGGAAAGTGGATGTTGTT+GGG 0.383839 4.1:+40673338 None:intergenic
GGTCTGGTGCTGCCCCTCTT+GGG 0.391948 4.1:-40671927 MS.gene09107:CDS
GCCACCGATGATTCTTGCTT+TGG 0.397468 4.1:-40672001 MS.gene09107:CDS
ACCTCACCAGCCTCGTCATC+AGG 0.398355 4.1:+40670245 None:intergenic
GTTTCTTCGTTGAAGAGTAT+TGG 0.404243 4.1:-40671949 MS.gene09107:CDS
CCCACTCCAAGTTGAGAGTT+GGG 0.423163 4.1:-40668472 MS.gene09107:CDS
GCCCACTCCAAGTTGAGAGT+TGG 0.424534 4.1:-40668473 MS.gene09107:CDS
TTCCTCGGACAGCGAACTGT+TGG 0.428772 4.1:+40670196 None:intergenic
TCCTCGGACAGCGAACTGTT+GGG 0.429184 4.1:+40670197 None:intergenic
AATTTACCTTGCATCATGTT+GGG 0.436629 4.1:+40671414 None:intergenic
ATTCGTCATTCTGGCTCAGC+TGG 0.439809 4.1:-40671531 MS.gene09107:CDS
TGGGTACATACAGGAGATCT+TGG 0.444644 4.1:-40670895 MS.gene09107:CDS
GAACATGTCTATGTCTCAAC+AGG 0.448694 4.1:-40668525 MS.gene09107:CDS
TTCTGGCTCAGCTGGAATGT+TGG 0.451563 4.1:-40671523 MS.gene09107:CDS
CTGTACTCATCAGGAACAAC+AGG 0.452237 4.1:-40672279 MS.gene09107:CDS
TCTCAACAGGTTGGGCTGTA+GGG 0.455116 4.1:-40668512 MS.gene09107:CDS
AGGAAGTACGGTGGTTTCGA+TGG 0.456299 4.1:-40672091 MS.gene09107:CDS
CCACTCCCTCCAAAACAGTT+GGG 0.456833 4.1:-40671456 MS.gene09107:CDS
TCACTTTGCTCCATAATTCA+GGG 0.464752 4.1:+40673198 None:intergenic
GAACGAACAACATAGGCAAT+TGG 0.465645 4.1:+40670221 None:intergenic
CTTGACAGTGGAGGGATCAC+AGG 0.467126 4.1:-40668379 MS.gene09107:CDS
AGGGACCTGTATATTCCATC+TGG 0.467820 4.1:+40673575 None:intergenic
CAATTTACCTTGCATCATGT+TGG 0.472409 4.1:+40671413 None:intergenic
TCTCTTTCAATGCAGAGATC+AGG 0.473277 4.1:-40673605 None:intergenic
GCGGCTTTGCTGTACTCATC+AGG 0.475013 4.1:-40672288 MS.gene09107:CDS
ATCTTGTACTATTAGGGGTA+TGG 0.475615 4.1:-40671603 MS.gene09107:intron
ATAGGCTCGACAAGCTATAT+GGG 0.476465 4.1:+40668331 None:intergenic
CCATGGCCCAACTCTCAACT+TGG 0.477576 4.1:+40668466 None:intergenic
GTTTCATGTGTTTGGATTGG+CGG 0.478530 4.1:-40672139 MS.gene09107:CDS
AGTGATGACTAGTTTAGGAT+TGG 0.480864 4.1:+40673223 None:intergenic
CGACAGCATCTTGTATTTCA+GGG 0.482401 4.1:+40670497 None:intergenic
ATGGGGAGGTTTGAGTTAGA+GGG 0.483197 4.1:-40672072 MS.gene09107:CDS
GGAACTCTCTAAACAAATCA+AGG 0.483841 4.1:-40673249 MS.gene09107:CDS
TCAATGCAGAGATCAGGTTA+TGG 0.485376 4.1:-40673599 MS.gene09107:CDS
CGCTGCGATGAAGTTCTTGT+GGG 0.486204 4.1:+40672233 None:intergenic
TTCCTAGCTGCGGCCTCCAT+AGG 0.489963 4.1:-40673311 MS.gene09107:CDS
AACATGGACGATGATTTAGC+AGG 0.490835 4.1:-40672198 MS.gene09107:CDS
TGGCGAAACAGAGTGTGGTT+GGG 0.494845 4.1:-40671981 MS.gene09107:CDS
TGGTGCTGCCCCTCTTGGGA+AGG 0.497575 4.1:-40671923 MS.gene09107:CDS
GGCTGTAGGGTACACTATGC+TGG 0.500849 4.1:-40668499 MS.gene09107:CDS
TACAGGAAAGTGGATGTTGT+TGG 0.502406 4.1:+40673337 None:intergenic
GCCACTCCCTCCAAAACAGT+TGG 0.505198 4.1:-40671457 MS.gene09107:CDS
TGTCTATGTCTCAACAGGTT+GGG 0.510775 4.1:-40668520 MS.gene09107:CDS
GATGTTTCATGTGTTTGGAT+TGG 0.513148 4.1:-40672142 MS.gene09107:CDS
AGGAACAACAGGAGTGAGCA+AGG 0.513497 4.1:-40672268 MS.gene09107:CDS
TCGTTGAAGAGTATTGGGTC+TGG 0.513518 4.1:-40671943 MS.gene09107:CDS
TCCTGTATGTTTCCTAGCTG+CGG 0.513601 4.1:-40673321 MS.gene09107:CDS
GGAAGTACGGTGGTTTCGAT+GGG 0.514954 4.1:-40672090 MS.gene09107:CDS
GTCTCAACAGGTTGGGCTGT+AGG 0.515486 4.1:-40668513 MS.gene09107:CDS
AGAGGTTTGGATTGTTTGGG+AGG 0.520044 4.1:+40673537 None:intergenic
TACGATCAACAACATAAAGT+TGG 0.524847 4.1:+40670854 None:intergenic
TCCTGATGACGAGGCTGGTG+AGG 0.526657 4.1:-40670246 MS.gene09107:CDS
AGATTTCCTGATGACGAGGC+TGG 0.527482 4.1:-40670251 MS.gene09107:CDS
GCACGGGATCTGCATGAGGC+TGG 0.528996 4.1:-40668430 MS.gene09107:CDS
GCACACAGTTTACTCAACCT+TGG 0.529470 4.1:-40673395 MS.gene09107:CDS
AAACTTCTGAATTTCTTCCT+CGG 0.530812 4.1:+40670181 None:intergenic
AGTATAAAGTGACGAACTTG+TGG 0.533662 4.1:-40672029 MS.gene09107:CDS
GAGGACTAGAGAAGGTCTTA+GGG 0.534815 4.1:+40673556 None:intergenic
CGCCTATGGAGGCCGCAGCT+AGG 0.536020 4.1:+40673309 None:intergenic
ATGGTCCAGATGGAATATAC+AGG 0.539139 4.1:-40673580 MS.gene09107:CDS
GAATGACGAATACCTACGCT+TGG 0.539411 4.1:+40671543 None:intergenic
CAGGAAAGTGGATGTTGTTG+GGG 0.539800 4.1:+40673339 None:intergenic
CTCCTTCTCTTGACAGTGGA+GGG 0.540658 4.1:-40668387 MS.gene09107:CDS
AATGAGGGGTGGGTACATAC+AGG 0.542233 4.1:-40670904 MS.gene09107:CDS
TGTGAAGAGGAATGAGACTA+AGG 0.543904 4.1:+40673514 None:intergenic
AGTGGTGACTATAGCGCCTA+TGG 0.543976 4.1:+40673295 None:intergenic
CCGCTGCGATGAAGTTCTTG+TGG 0.545678 4.1:+40672232 None:intergenic
AAAACAAACTTTAGACAATG+AGG 0.546586 4.1:-40670920 MS.gene09107:CDS
GCCCAACTCTCAACTTGGAG+TGG 0.550601 4.1:+40668471 None:intergenic
GAGGCGTTGATTGAATCAGC+AGG 0.553384 4.1:-40672357 MS.gene09107:CDS
AGTTCCGAGACGGTGTAAAG+AGG 0.553940 4.1:+40673266 None:intergenic
AAGAAGATCTTCAAGTTCTG+TGG 0.554009 4.1:+40670528 None:intergenic
TTGGCGAAACAGAGTGTGGT+TGG 0.557745 4.1:-40671982 MS.gene09107:CDS
CACTCCCTCCAAAACAGTTG+GGG 0.559404 4.1:-40671455 MS.gene09107:CDS
AGATCAGGTTATGGTCCAGA+TGG 0.560007 4.1:-40673590 MS.gene09107:CDS
ACATGGACGATGATTTAGCA+GGG 0.561737 4.1:-40672197 MS.gene09107:CDS
AAACAAACTTTAGACAATGA+GGG 0.563086 4.1:-40670919 MS.gene09107:CDS
GTACGGTGGTTTCGATGGGG+AGG 0.564150 4.1:-40672086 MS.gene09107:CDS
CCATCAATTCCTTCCCAAGA+GGG 0.564830 4.1:+40671914 None:intergenic
GCCGCAGCTAGGAAACATAC+AGG 0.567795 4.1:+40673320 None:intergenic
ATGTCTATGTCTCAACAGGT+TGG 0.567826 4.1:-40668521 MS.gene09107:CDS
AACTTTAGACAATGAGGGGT+GGG 0.570046 4.1:-40670914 MS.gene09107:CDS
CCCAACTCTCAACTTGGAGT+GGG 0.570219 4.1:+40668472 None:intergenic
TGGGGAGGTTTGAGTTAGAG+GGG 0.571499 4.1:-40672071 MS.gene09107:CDS
CTAGGAAACATACAGGAAAG+TGG 0.575928 4.1:+40673327 None:intergenic
GTATAAAGTGACGAACTTGT+GGG 0.576050 4.1:-40672028 MS.gene09107:CDS
CGAAGCTCAAATAGTGAGTG+TGG 0.579940 4.1:-40671490 MS.gene09107:CDS
ACCCAACAGTTCGCTGTCCG+AGG 0.582426 4.1:-40670198 MS.gene09107:CDS
AGAGGAATGAGACTAAGGAG+AGG 0.582876 4.1:+40673519 None:intergenic
ACAGCTAAGGAGAGGAAGTA+CGG 0.583716 4.1:-40672103 MS.gene09107:CDS
GTTGGGTGAACGAACAACAT+AGG 0.583728 4.1:+40670214 None:intergenic
GGAAGAGTCTGCATCGATGA+GGG 0.584527 4.1:+40673463 None:intergenic
CTATAGATTTCCTGATGACG+AGG 0.586638 4.1:-40670255 MS.gene09107:intron
ATCCCTCCACTGTCAAGAGA+AGG 0.588490 4.1:+40668385 None:intergenic
TTATAACATACGCACAGCTA+AGG 0.592381 4.1:-40672116 MS.gene09107:CDS
AGAAGATCTTCAAGTTCTGT+GGG 0.594014 4.1:+40670529 None:intergenic
CCAAGTTGAGAGTTGGGCCA+TGG 0.595384 4.1:-40668466 MS.gene09107:CDS
GAAGGCACGGGATCTGCATG+AGG 0.596005 4.1:-40668434 MS.gene09107:CDS
AAATGATGGTTCAATCGGAT+AGG 0.597031 4.1:+40668313 None:intergenic
AAATCCTCTTTACACCGTCT+CGG 0.597545 4.1:-40673270 MS.gene09107:CDS
AAGAAGAGACGCTTGTGAAG+AGG 0.603096 4.1:+40673501 None:intergenic
TTCGCCAAAGCAAGAATCAT+CGG 0.605055 4.1:+40671997 None:intergenic
GGAACAACAGGAGTGAGCAA+GGG 0.616712 4.1:-40672267 MS.gene09107:CDS
TCTATCGAAAATCCAAGCGT+AGG 0.620944 4.1:-40671555 MS.gene09107:CDS
CCTCCTTCTCTTGACAGTGG+AGG 0.621506 4.1:-40668388 MS.gene09107:CDS
TTGTTTAGAGAGTTCCGAGA+CGG 0.623526 4.1:+40673256 None:intergenic
AAACTTTAGACAATGAGGGG+TGG 0.625674 4.1:-40670915 MS.gene09107:CDS
CGAGGTCCCAACATGATGCA+AGG 0.625710 4.1:-40671420 MS.gene09107:intron
AACAAACTTTAGACAATGAG+GGG 0.631532 4.1:-40670918 MS.gene09107:CDS
GGGAAGAGTCTGCATCGATG+AGG 0.632215 4.1:+40673462 None:intergenic
CCTCCACTGTCAAGAGAAGG+AGG 0.636291 4.1:+40668388 None:intergenic
TTGTTTGGGAGGACTAGAGA+AGG 0.642123 4.1:+40673548 None:intergenic
CATCAATTCCTTCCCAAGAG+GGG 0.642790 4.1:+40671915 None:intergenic
TGCTTTGGCGAAACAGAGTG+TGG 0.643161 4.1:-40671986 MS.gene09107:CDS
TCCATCAATTCCTTCCCAAG+AGG 0.647141 4.1:+40671913 None:intergenic
CATGGACGATGATTTAGCAG+GGG 0.652854 4.1:-40672196 MS.gene09107:CDS
AAAGAACTGATCAAATACAA+AGG 0.656643 4.1:-40670829 MS.gene09107:CDS
ACCTGATAAATAGCAACATG+AGG 0.659695 4.1:+40671871 None:intergenic
AGGAAAGTGGATGTTGTTGG+GGG 0.661671 4.1:+40673340 None:intergenic
AATCCAAACACATGAAACAT+CGG 0.667167 4.1:+40672144 None:intergenic
ACTCCCTCCAAAACAGTTGG+GGG 0.667959 4.1:-40671454 MS.gene09107:CDS
GGTGACTATAGCGCCTATGG+AGG 0.671907 4.1:+40673298 None:intergenic
GTGCCTTCGCCAAAATACCA+TGG 0.672525 4.1:+40668449 None:intergenic
GAAGTACGGTGGTTTCGATG+GGG 0.672754 4.1:-40672089 MS.gene09107:CDS
ACACCTCCTTCTCTTGACAG+TGG 0.679134 4.1:-40668391 MS.gene09107:CDS
TCTTGGGAAGGAATTGATGG+AGG 0.680710 4.1:-40671911 MS.gene09107:CDS
ACATACGCACAGCTAAGGAG+AGG 0.690899 4.1:-40672111 MS.gene09107:CDS
GCCAAAGCAAGAATCATCGG+TGG 0.703214 4.1:+40672000 None:intergenic
AGCGGCGTTAATGATTAACA+TGG 0.703668 4.1:-40672214 MS.gene09107:CDS
TGTGAAACAAAGCGATACAG+CGG 0.712100 4.1:-40672307 MS.gene09107:CDS
CCACAAGAACTTCATCGCAG+CGG 0.725068 4.1:-40672232 MS.gene09107:CDS
GGTGTAAAGAGGATTTGCAG+TGG 0.728663 4.1:+40673277 None:intergenic
AGGTTATTATAACAACCCAG+AGG 0.733474 4.1:-40670947 MS.gene09107:CDS
GCTAAGGAGAGGAAGTACGG+TGG 0.791133 4.1:-40672100 MS.gene09107:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAAATCTGTAATTTT+TGG - chr4.1:40670188-40670207 MS.gene09107:CDS 10.0%
!! ATTAATAGAGAAATATCAAT+TGG + chr4.1:40671620-40671639 None:intergenic 15.0%
!! GTTTAAAAATTAGTTGAAAT+TGG + chr4.1:40671925-40671944 None:intergenic 15.0%
!!! AAAGGAAAAAAAGTTTTTTT+GGG + chr4.1:40669069-40669088 None:intergenic 15.0%
!!! TTGCATTATATCTTATATTT+TGG + chr4.1:40672061-40672080 None:intergenic 15.0%
!! AATAAATAACTCTGCTTAAA+AGG + chr4.1:40672295-40672314 None:intergenic 20.0%
!! AATAACCTGAAATATTGTAT+AGG + chr4.1:40670960-40670979 None:intergenic 20.0%
!! AATCTACATCTATTATTGAA+TGG - chr4.1:40672244-40672263 MS.gene09107:CDS 20.0%
!! ACAATATAATTGTATTCTGT+TGG + chr4.1:40670580-40670599 None:intergenic 20.0%
!! ACATATCATATGCAATATTA+TGG + chr4.1:40673258-40673277 None:intergenic 20.0%
!! ACCATTAAAAACATAAATAC+AGG + chr4.1:40671883-40671902 None:intergenic 20.0%
!! AGATATAAAGTTAGTTAGAT+TGG - chr4.1:40668794-40668813 MS.gene09107:intron 20.0%
!! ATAGTTTGACTAAACAATTA+CGG + chr4.1:40672866-40672885 None:intergenic 20.0%
!! ATTGATTATCTTGTACTATT+AGG - chr4.1:40670309-40670328 MS.gene09107:intron 20.0%
!! CATTTAATAAATGATGTATG+TGG + chr4.1:40672456-40672475 None:intergenic 20.0%
!! CCATTAAAAACATAAATACA+GGG + chr4.1:40671882-40671901 None:intergenic 20.0%
!! GATCTTAAGAAATATTAATG+AGG + chr4.1:40671273-40671292 None:intergenic 20.0%
!! TAAAATAGCTATCTTTAATC+CGG + chr4.1:40670155-40670174 None:intergenic 20.0%
!! TAACAGACTTTATATCTAAT+AGG - chr4.1:40669502-40669521 MS.gene09107:intron 20.0%
!! TTAATATTTCTTAAGATCGA+TGG - chr4.1:40671275-40671294 MS.gene09107:intron 20.0%
!! TTGATTATCTTGTACTATTA+GGG - chr4.1:40670310-40670329 MS.gene09107:intron 20.0%
!!! CAAAGGAAAAAAAGTTTTTT+TGG + chr4.1:40669070-40669089 None:intergenic 20.0%
!!! TAACTTTTCAATATAGTAGA+TGG - chr4.1:40669211-40669230 MS.gene09107:intron 20.0%
!!! TAATTTTTAAACACGCTTAT+AGG - chr4.1:40671933-40671952 MS.gene09107:CDS 20.0%
!!! TGTATTTATGTTTTTAATGG+TGG - chr4.1:40671882-40671901 MS.gene09107:CDS 20.0%
!!! TGTTATTTAAAAGCATGAAA+AGG + chr4.1:40670791-40670810 None:intergenic 20.0%
! AAAACAAACTTTAGACAATG+AGG - chr4.1:40670999-40671018 MS.gene09107:intron 25.0%
! AAACAAACTTTAGACAATGA+GGG - chr4.1:40671000-40671019 MS.gene09107:intron 25.0%
! AAAGAACTGATCAAATACAA+AGG - chr4.1:40671090-40671109 MS.gene09107:intron 25.0%
! AAGTACAGTCTATAAAAAGT+AGG - chr4.1:40672921-40672940 MS.gene09107:intron 25.0%
! ACCATATAAATATACTGTGA+TGG - chr4.1:40671578-40671597 MS.gene09107:CDS 25.0%
! GTATAGGAAAAGTTTCATAT+GGG + chr4.1:40670944-40670963 None:intergenic 25.0%
! TAAGAGCCTAATAATTATGT+TGG + chr4.1:40672172-40672191 None:intergenic 25.0%
! TACTCTATTATGACAAACAA+TGG + chr4.1:40673037-40673056 None:intergenic 25.0%
! TATATCTCCAACTTTATGAT+TGG - chr4.1:40670905-40670924 MS.gene09107:CDS 25.0%
! TATCATATGCAATATTATGG+TGG + chr4.1:40673255-40673274 None:intergenic 25.0%
! TATCTAATAGGTAATGTAAC+AGG - chr4.1:40669514-40669533 MS.gene09107:intron 25.0%
! TATTGTATCATGTGGTTTAT+AGG - chr4.1:40672883-40672902 MS.gene09107:intron 25.0%
! TCCATCACAGTATATTTATA+TGG + chr4.1:40671582-40671601 None:intergenic 25.0%
! TCCTGCAATTATTATCAATT+CGG - chr4.1:40668763-40668782 MS.gene09107:intron 25.0%
! TGATTATCTTGTACTATTAG+GGG - chr4.1:40670311-40670330 MS.gene09107:intron 25.0%
! TGTATAGGAAAAGTTTCATA+TGG + chr4.1:40670945-40670964 None:intergenic 25.0%
! TGTTATATTATGTTCTTCTG+TGG - chr4.1:40673060-40673079 MS.gene09107:intron 25.0%
! TTACATTCCAATCATAAAGT+TGG + chr4.1:40670915-40670934 None:intergenic 25.0%
!! ATATCCTAACTTGTAACAAT+TGG - chr4.1:40671515-40671534 MS.gene09107:CDS 25.0%
!! CTTTTCCTATACAATATTTC+AGG - chr4.1:40670952-40670971 MS.gene09107:intron 25.0%
!! TAGATGTAGATTTTTATGCT+TGG + chr4.1:40672236-40672255 None:intergenic 25.0%
!!! ATTGTCTAAAGTTTGTTTTG+TGG + chr4.1:40670998-40671017 None:intergenic 25.0%
!!! CCCTGTATTTATGTTTTTAA+TGG - chr4.1:40671879-40671898 MS.gene09107:CDS 25.0%
!!! TAAGCAAAAGTTGACTTTTT+AGG + chr4.1:40672481-40672500 None:intergenic 25.0%
!!! TTGTCTCTTTGAAATTAACT+AGG - chr4.1:40671362-40671381 MS.gene09107:intron 25.0%
AAACTTCTGAATTTCTTCCT+CGG + chr4.1:40671741-40671760 None:intergenic 30.0%
AACAAACTTTAGACAATGAG+GGG - chr4.1:40671001-40671020 MS.gene09107:intron 30.0%
AACATCTAAACTGAGCAATT+TGG + chr4.1:40669290-40669309 None:intergenic 30.0%
AACCCACCAACATAATTATT+AGG - chr4.1:40672163-40672182 MS.gene09107:CDS 30.0%
AAGTAAACATAACAGTGACA+AGG + chr4.1:40671204-40671223 None:intergenic 30.0%
AATCACTTAGAGTTATTTGC+AGG + chr4.1:40670555-40670574 None:intergenic 30.0%
AATCCAAACACATGAAACAT+CGG + chr4.1:40669778-40669797 None:intergenic 30.0%
AATTTACCTTGCATCATGTT+GGG + chr4.1:40670508-40670527 None:intergenic 30.0%
ACATGACCATGAACAATATT+TGG - chr4.1:40672415-40672434 MS.gene09107:intron 30.0%
AGCCTAATAATTATGTTGGT+GGG + chr4.1:40672168-40672187 None:intergenic 30.0%
AGTAGTTATGATCAATGAAG+AGG - chr4.1:40669157-40669176 MS.gene09107:intron 30.0%
AGTCAAACTATTGTATCATG+TGG - chr4.1:40672875-40672894 MS.gene09107:intron 30.0%
ATAGAATTCCAATTGAGAGA+GGG - chr4.1:40672784-40672803 MS.gene09107:intron 30.0%
CAAACCAATTGTTACAAGTT+AGG + chr4.1:40671522-40671541 None:intergenic 30.0%
CAGATGGAAATAGTAATGAT+GGG + chr4.1:40672358-40672377 None:intergenic 30.0%
CCTGCAATTATTATCAATTC+GGG - chr4.1:40668764-40668783 MS.gene09107:intron 30.0%
GAACAACTAACTTATAAGCA+AGG + chr4.1:40669403-40669422 None:intergenic 30.0%
GATATAAAAACTGCAAGACT+TGG + chr4.1:40670891-40670910 None:intergenic 30.0%
GATCAAATACAAAGGTTATC+AGG - chr4.1:40671098-40671117 MS.gene09107:intron 30.0%
TAACTGATGCAACAGTTATA+TGG + chr4.1:40669474-40669493 None:intergenic 30.0%
TAATGAAGAACAGTGATAAC+TGG + chr4.1:40668925-40668944 None:intergenic 30.0%
TACGATCAACAACATAAAGT+TGG + chr4.1:40671068-40671087 None:intergenic 30.0%
TAGTTGACAACCTCAAAATA+AGG - chr4.1:40672314-40672333 MS.gene09107:CDS 30.0%
TATTTAGAAGTTGTAGCAGA+TGG + chr4.1:40672374-40672393 None:intergenic 30.0%
TCAGAAGTTTATTGCTAATC+AGG - chr4.1:40671751-40671770 MS.gene09107:intron 30.0%
TCTATCCATTAAAGCAACAT+TGG + chr4.1:40672769-40672788 None:intergenic 30.0%
TGTTATGTTTACTTGAGCAT+TGG - chr4.1:40671210-40671229 MS.gene09107:intron 30.0%
TTGATCAAGAGAAGTTTCAT+TGG + chr4.1:40670739-40670758 None:intergenic 30.0%
TTGGAAAGATGATATGGTAT+TGG - chr4.1:40671229-40671248 MS.gene09107:intron 30.0%
! AGTGTTCTTGTTATGCTTTA+AGG - chr4.1:40670606-40670625 MS.gene09107:intron 30.0%
! ATTTTTCTTGAAGCTGTCTT+AGG + chr4.1:40672006-40672025 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - chr4.1:40672491-40672510 MS.gene09107:intron 30.0%
! TAATAATTATGTTGGTGGGT+TGG + chr4.1:40672164-40672183 None:intergenic 30.0%
! TATCATGCAAGTTTTACTCA+CGG + chr4.1:40671453-40671472 None:intergenic 30.0%
! TGGATTTTCGATAGAAACAA+CGG + chr4.1:40670359-40670378 None:intergenic 30.0%
!! ATGTTGCTATTTATCAGGTA+AGG - chr4.1:40670052-40670071 MS.gene09107:intron 30.0%
!! TAAATCATTTTTATCCCAGC+TGG + chr4.1:40670282-40670301 None:intergenic 30.0%
!! TTTCTTCGTTGAAGAGTATT+GGG - chr4.1:40669971-40669990 MS.gene09107:intron 30.0%
!!! AAGATATTGGCCTTATTTTG+AGG + chr4.1:40672327-40672346 None:intergenic 30.0%
!!! CAAGTTTTAAACTATGTCTG+AGG - chr4.1:40671839-40671858 MS.gene09107:intron 30.0%
!!! CTTGGATATTTTGATGAGAT+CGG - chr4.1:40671042-40671061 MS.gene09107:intron 30.0%
!!! TACGAGGATTATTTTTGACA+AGG - chr4.1:40671319-40671338 MS.gene09107:intron 30.0%
AAACAAGTGTCTGTGTTAGA+AGG + chr4.1:40673321-40673340 None:intergenic 35.0%
AAAGTCTCTGTAGAGTACAA+TGG - chr4.1:40670851-40670870 MS.gene09107:CDS 35.0%
ACATAACAGTGACAAGGATT+TGG + chr4.1:40671198-40671217 None:intergenic 35.0%
ACCATTCAAAAGATTGCGAA+GGG - chr4.1:40671960-40671979 MS.gene09107:CDS 35.0%
ACCTGATAAATAGCAACATG+AGG + chr4.1:40670051-40670070 None:intergenic 35.0%
AGAGTTGTTCCTTTACAAAC+TGG + chr4.1:40673222-40673241 None:intergenic 35.0%
AGGTTATTATAACAACCCAG+AGG - chr4.1:40670972-40670991 MS.gene09107:intron 35.0%
AGTATAAAGTGACGAACTTG+TGG - chr4.1:40669890-40669909 MS.gene09107:intron 35.0%
ATCTTGTACTATTAGGGGTA+TGG - chr4.1:40670316-40670335 MS.gene09107:intron 35.0%
ATGCTGCCAAATATTGTTCA+TGG + chr4.1:40672424-40672443 None:intergenic 35.0%
CAAGTTATCTAGCGAATGAT+GGG + chr4.1:40669425-40669444 None:intergenic 35.0%
CAATGACACATTCAGATCAT+TGG + chr4.1:40670239-40670258 None:intergenic 35.0%
CAATTTACCTTGCATCATGT+TGG + chr4.1:40670509-40670528 None:intergenic 35.0%
CAGTCTATAAAAAGTAGGAG+TGG - chr4.1:40672926-40672945 MS.gene09107:intron 35.0%
CATATGATATGTCCAACATC+GGG - chr4.1:40673266-40673285 MS.gene09107:CDS 35.0%
CATTGCATTGAAGCTATTTG+AGG - chr4.1:40670254-40670273 MS.gene09107:intron 35.0%
GAATGTTGATCTTGATGAGA+CGG - chr4.1:40670210-40670229 MS.gene09107:CDS 35.0%
GAGCCTAATAATTATGTTGG+TGG + chr4.1:40672169-40672188 None:intergenic 35.0%
GATAGAATTCCAATTGAGAG+AGG - chr4.1:40672783-40672802 MS.gene09107:intron 35.0%
GATGTTTCATGTGTTTGGAT+TGG - chr4.1:40669777-40669796 MS.gene09107:intron 35.0%
GCAGATGGAAATAGTAATGA+TGG + chr4.1:40672359-40672378 None:intergenic 35.0%
GCATATGATATGTCCAACAT+CGG - chr4.1:40673265-40673284 MS.gene09107:CDS 35.0%
GCATGATAGTTTACGTTTGA+GGG - chr4.1:40671465-40671484 MS.gene09107:CDS 35.0%
GGAACTCTCTAAACAAATCA+AGG - chr4.1:40668670-40668689 MS.gene09107:intron 35.0%
GTAAAAGTTTGTCGAAGCAA+AGG + chr4.1:40669087-40669106 None:intergenic 35.0%
GTATAAAGTGACGAACTTGT+GGG - chr4.1:40669891-40669910 MS.gene09107:intron 35.0%
GTGTTAGACACAGTATATAG+AGG - chr4.1:40673177-40673196 MS.gene09107:CDS 35.0%
TAATCTTGATCGGACAGTTA+GGG - chr4.1:40670075-40670094 MS.gene09107:intron 35.0%
TAGAATTCCAATTGAGAGAG+GGG - chr4.1:40672785-40672804 MS.gene09107:intron 35.0%
TCAAGTTATCTAGCGAATGA+TGG + chr4.1:40669426-40669445 None:intergenic 35.0%
TCACTTTGCTCCATAATTCA+GGG + chr4.1:40668724-40668743 None:intergenic 35.0%
TCAGGTAAGGTAATCTTGAT+CGG - chr4.1:40670065-40670084 MS.gene09107:intron 35.0%
TGAGATTAGAGGATGATGTT+CGG + chr4.1:40672539-40672558 None:intergenic 35.0%
TGCATGATAGTTTACGTTTG+AGG - chr4.1:40671464-40671483 MS.gene09107:CDS 35.0%
TTACCGATGTTTCATGTGTT+TGG - chr4.1:40669772-40669791 MS.gene09107:intron 35.0%
TTATAACATACGCACAGCTA+AGG - chr4.1:40669803-40669822 MS.gene09107:intron 35.0%
TTCACTATACTGCTATCAGT+TGG - chr4.1:40668852-40668871 MS.gene09107:intron 35.0%
TTCACTTTGCTCCATAATTC+AGG + chr4.1:40668725-40668744 None:intergenic 35.0%
TTGAGAGAAGTTGAGAGTTT+GGG + chr4.1:40668480-40668499 None:intergenic 35.0%
! AAGAAGATCTTCAAGTTCTG+TGG + chr4.1:40671394-40671413 None:intergenic 35.0%
! AGAAGATCTTCAAGTTCTGT+GGG + chr4.1:40671393-40671412 None:intergenic 35.0%
! ATCATGCAAGTTTTACTCAC+GGG + chr4.1:40671452-40671471 None:intergenic 35.0%
! CCCGAATTGATAATAATTGC+AGG + chr4.1:40668767-40668786 None:intergenic 35.0%
! GAAATAGTAATGATGGGATC+AGG + chr4.1:40672352-40672371 None:intergenic 35.0%
! GTTTCTTCGTTGAAGAGTAT+TGG - chr4.1:40669970-40669989 MS.gene09107:intron 35.0%
! TTCAAACTTCACCAGTTTTG+AGG - chr4.1:40669543-40669562 MS.gene09107:intron 35.0%
! TTTCTTAAGATCGATGGACT+AGG - chr4.1:40671281-40671300 MS.gene09107:intron 35.0%
!! ACCTCATGTTGCTATTTATC+AGG - chr4.1:40670047-40670066 MS.gene09107:intron 35.0%
!! AGTGATGACTAGTTTAGGAT+TGG + chr4.1:40668699-40668718 None:intergenic 35.0%
!! CTTTGTTTCACATCGTTTTC+TGG + chr4.1:40669604-40669623 None:intergenic 35.0%
!! CTTTTGCTGTAACTTGTAAG+TGG + chr4.1:40671807-40671826 None:intergenic 35.0%
!! TCTTGCCAATGTTGCTTTAA+TGG - chr4.1:40672761-40672780 MS.gene09107:intron 35.0%
!! TGAGCATTGGAAAGATGATA+TGG - chr4.1:40671223-40671242 MS.gene09107:intron 35.0%
AAACTTTAGACAATGAGGGG+TGG - chr4.1:40671004-40671023 MS.gene09107:intron 40.0%
AAATCCTCTTTACACCGTCT+CGG - chr4.1:40668649-40668668 MS.gene09107:intron 40.0%
AACATGGACGATGATTTAGC+AGG - chr4.1:40669721-40669740 MS.gene09107:intron 40.0%
AACTTTAGACAATGAGGGGT+GGG - chr4.1:40671005-40671024 MS.gene09107:intron 40.0%
AAGGAGAGGTTTGGATTGTT+TGG + chr4.1:40668389-40668408 None:intergenic 40.0%
AATGAGACTAAGGAGAGGTT+TGG + chr4.1:40668398-40668417 None:intergenic 40.0%
ACAGGAAAGTGGATGTTGTT+GGG + chr4.1:40668584-40668603 None:intergenic 40.0%
ACATGGACGATGATTTAGCA+GGG - chr4.1:40669722-40669741 MS.gene09107:intron 40.0%
ACATTCACGAATTCGGACAT+CGG - chr4.1:40670103-40670122 MS.gene09107:intron 40.0%
ACCGACTGATCTTGATAGAA+AGG + chr4.1:40670132-40670151 None:intergenic 40.0%
ACGACAGCATCTTGTATTTC+AGG + chr4.1:40671426-40671445 None:intergenic 40.0%
AGATTAGAGGATGATGTTCG+GGG + chr4.1:40672537-40672556 None:intergenic 40.0%
AGCGGCGTTAATGATTAACA+TGG - chr4.1:40669705-40669724 MS.gene09107:intron 40.0%
AGGAGAGGTTTGGATTGTTT+GGG + chr4.1:40668388-40668407 None:intergenic 40.0%
ATAGGCTCGACAAGCTATAT+GGG + chr4.1:40673591-40673610 None:intergenic 40.0%
ATGAGGGTGGAACGTATATT+CGG - chr4.1:40672563-40672582 MS.gene09107:intron 40.0%
ATGGGATCAGGAGAAGATAT+TGG + chr4.1:40672340-40672359 None:intergenic 40.0%
ATGGTCCAGATGGAATATAC+AGG - chr4.1:40668339-40668358 MS.gene09107:CDS 40.0%
ATGTCTATGTCTCAACAGGT+TGG - chr4.1:40673398-40673417 MS.gene09107:CDS 40.0%
CACAAGAATTATACTCCCTC+CGG + chr4.1:40672513-40672532 None:intergenic 40.0%
CACCATTCAAAAGATTGCGA+AGG - chr4.1:40671959-40671978 MS.gene09107:CDS 40.0%
CAGATTGAGGCAATCATTGA+AGG - chr4.1:40672595-40672614 MS.gene09107:intron 40.0%
CCTCTAATCTCAAGTGATGA+GGG - chr4.1:40672547-40672566 MS.gene09107:intron 40.0%
CGACAGCATCTTGTATTTCA+GGG + chr4.1:40671425-40671444 None:intergenic 40.0%
CGATCACTAGTGAACTAGAT+TGG - chr4.1:40668889-40668908 MS.gene09107:intron 40.0%
CGTCGACACATATAGCATAT+AGG + chr4.1:40669365-40669384 None:intergenic 40.0%
CTAGGAAACATACAGGAAAG+TGG + chr4.1:40668595-40668614 None:intergenic 40.0%
CTCTGACATTAAGTGTGTCT+CGG - chr4.1:40668990-40669009 MS.gene09107:intron 40.0%
CTGAGATGACCAGTTTGTAA+AGG - chr4.1:40673210-40673229 MS.gene09107:CDS 40.0%
GAAATCATGTTGTGGTTACG+AGG - chr4.1:40671303-40671322 MS.gene09107:intron 40.0%
GAACATGTCTATGTCTCAAC+AGG - chr4.1:40673394-40673413 MS.gene09107:CDS 40.0%
GAACGAACAACATAGGCAAT+TGG + chr4.1:40671701-40671720 None:intergenic 40.0%
GACACTTCTACGAGGTTTAA+AGG - chr4.1:40669126-40669145 MS.gene09107:intron 40.0%
GAGATTAGAGGATGATGTTC+GGG + chr4.1:40672538-40672557 None:intergenic 40.0%
GCCTTTCTATCAAGATCAGT+CGG - chr4.1:40670128-40670147 MS.gene09107:intron 40.0%
GTAATCTTGATCGGACAGTT+AGG - chr4.1:40670074-40670093 MS.gene09107:intron 40.0%
GTTGAGAGAAGTTGAGAGTT+TGG + chr4.1:40668481-40668500 None:intergenic 40.0%
TACAGGAAAGTGGATGTTGT+TGG + chr4.1:40668585-40668604 None:intergenic 40.0%
TATAAGCAAGGACTCTGACA+CGG + chr4.1:40669391-40669410 None:intergenic 40.0%
TCATCACTGTCCCTGAATTA+TGG - chr4.1:40668711-40668730 MS.gene09107:intron 40.0%
TCCTCTAATCTCAAGTGATG+AGG - chr4.1:40672546-40672565 MS.gene09107:intron 40.0%
TCTATCGAAAATCCAAGCGT+AGG - chr4.1:40670364-40670383 MS.gene09107:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4.1:40672495-40672514 MS.gene09107:intron 40.0%
TGTCTATGTCTCAACAGGTT+GGG - chr4.1:40673399-40673418 MS.gene09107:CDS 40.0%
TGTGAAACAAAGCGATACAG+CGG - chr4.1:40669612-40669631 MS.gene09107:intron 40.0%
TGTGAAGAGGAATGAGACTA+AGG + chr4.1:40668408-40668427 None:intergenic 40.0%
TTCAATCAACGCCTCAAAAC+TGG + chr4.1:40669557-40669576 None:intergenic 40.0%
TTCGCCAAAGCAAGAATCAT+CGG + chr4.1:40669925-40669944 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4.1:40672494-40672513 MS.gene09107:intron 40.0%
TTGTTTAGAGAGTTCCGAGA+CGG + chr4.1:40668666-40668685 None:intergenic 40.0%
! AAGTGTCTGAGATGTGTCTA+AGG + chr4.1:40669113-40669132 None:intergenic 40.0%
! ACCCTTCGCAATCTTTTGAA+TGG + chr4.1:40671964-40671983 None:intergenic 40.0%
! AGTGTCTGAGATGTGTCTAA+GGG + chr4.1:40669112-40669131 None:intergenic 40.0%
! CATATTTCCCCCAACTGTTT+TGG + chr4.1:40670475-40670494 None:intergenic 40.0%
! CTATAGATTTCCTGATGACG+AGG - chr4.1:40671664-40671683 MS.gene09107:intron 40.0%
! GTTCCGTGTTTGATTTCTGT+CGG + chr4.1:40672739-40672758 None:intergenic 40.0%
! GTTTCATGTGTTTGGATTGG+CGG - chr4.1:40669780-40669799 MS.gene09107:intron 40.0%
! TGAGTTAGAGGGGTTTTTGA+AGG - chr4.1:40669858-40669877 MS.gene09107:intron 40.0%
! TGGACTAGGAAATCATGTTG+TGG - chr4.1:40671295-40671314 MS.gene09107:intron 40.0%
!! CAGTTGTAGTCTTTGAAGCA+CGG - chr4.1:40668963-40668982 MS.gene09107:intron 40.0%
!!! AAAGTTTGTTTTGTGGCCTC+TGG + chr4.1:40670991-40671010 None:intergenic 40.0%
!!! AAGTTTGTTTTGTGGCCTCT+GGG + chr4.1:40670990-40671009 None:intergenic 40.0%
!!! CGTCGTTTTTGTTTATGCCA+AGG + chr4.1:40668544-40668563 None:intergenic 40.0%
AAGAAGAGACGCTTGTGAAG+AGG + chr4.1:40668421-40668440 None:intergenic 45.0%
AATGAATACAAGCCGAGCCA+AGG - chr4.1:40672137-40672156 MS.gene09107:CDS 45.0%
AATTGAGAGAGGGGATGATG+AGG - chr4.1:40672794-40672813 MS.gene09107:intron 45.0%
ACACCAACTTATGACCCATG+TGG - chr4.1:40673354-40673373 MS.gene09107:CDS 45.0%
ACAGCTAAGGAGAGGAAGTA+CGG - chr4.1:40669816-40669835 MS.gene09107:intron 45.0%
ACATCTCAGACACTTCTACG+AGG - chr4.1:40669118-40669137 MS.gene09107:intron 45.0%
ACCAACTTATGACCCATGTG+GGG - chr4.1:40673356-40673375 MS.gene09107:CDS 45.0%
AGAGGAATGAGACTAAGGAG+AGG + chr4.1:40668403-40668422 None:intergenic 45.0%
AGAGGTTTGGATTGTTTGGG+AGG + chr4.1:40668385-40668404 None:intergenic 45.0%
AGATCAGGTTATGGTCCAGA+TGG - chr4.1:40668329-40668348 MS.gene09107:CDS 45.0%
AGCCAACTTGAGTGGTATGT+CGG + chr4.1:40672967-40672986 None:intergenic 45.0%
AGCGTAGGTATTCGTCATTC+TGG - chr4.1:40670379-40670398 MS.gene09107:intron 45.0%
AGGAAAGTGGATGTTGTTGG+GGG + chr4.1:40668582-40668601 None:intergenic 45.0%
AGGAGTGGCAAAACAGATTG+AGG - chr4.1:40672941-40672960 MS.gene09107:intron 45.0%
AGGGACCTGTATATTCCATC+TGG + chr4.1:40668347-40668366 None:intergenic 45.0%
CACCAACTTATGACCCATGT+GGG - chr4.1:40673355-40673374 MS.gene09107:CDS 45.0%
CAGGAAAGTGGATGTTGTTG+GGG + chr4.1:40668583-40668602 None:intergenic 45.0%
CATCAATTCCTTCCCAAGAG+GGG + chr4.1:40670007-40670026 None:intergenic 45.0%
CATGGACGATGATTTAGCAG+GGG - chr4.1:40669723-40669742 MS.gene09107:intron 45.0%
CCACCGACAGAAATCAAACA+CGG - chr4.1:40672733-40672752 MS.gene09107:intron 45.0%
CCATCAATTCCTTCCCAAGA+GGG + chr4.1:40670008-40670027 None:intergenic 45.0%
CCCTCATCACTTGAGATTAG+AGG + chr4.1:40672550-40672569 None:intergenic 45.0%
CGAAGCTCAAATAGTGAGTG+TGG - chr4.1:40670429-40670448 MS.gene09107:intron 45.0%
CGAGACACACTTAATGTCAG+AGG + chr4.1:40668992-40669011 None:intergenic 45.0%
CTAATCTCAAGTGATGAGGG+TGG - chr4.1:40672550-40672569 MS.gene09107:intron 45.0%
CTGTACTCATCAGGAACAAC+AGG - chr4.1:40669640-40669659 MS.gene09107:intron 45.0%
GAATGACGAATACCTACGCT+TGG + chr4.1:40670379-40670398 None:intergenic 45.0%
GACACATGCCATACAAGTGT+TGG + chr4.1:40669036-40669055 None:intergenic 45.0%
GAGGACTAGAGAAGGTCTTA+GGG + chr4.1:40668366-40668385 None:intergenic 45.0%
GATAGGCTCGACAAGCTATA+TGG + chr4.1:40673592-40673611 None:intergenic 45.0%
GCACACAGTTTACTCAACCT+TGG - chr4.1:40668524-40668543 MS.gene09107:CDS 45.0%
GGAACGTATATTCGGGAAGT+AGG - chr4.1:40672571-40672590 MS.gene09107:intron 45.0%
GGAGCACACATTCACGAATT+CGG - chr4.1:40670096-40670115 MS.gene09107:intron 45.0%
GGTGTAAAGAGGATTTGCAG+TGG + chr4.1:40668645-40668664 None:intergenic 45.0%
GTCAGTGTCCAACACTTGTA+TGG - chr4.1:40669025-40669044 MS.gene09107:intron 45.0%
GTTGGGTGAACGAACAACAT+AGG + chr4.1:40671708-40671727 None:intergenic 45.0%
TCATCATCCCCTCTCTCAAT+TGG + chr4.1:40672795-40672814 None:intergenic 45.0%
TCCATCAATTCCTTCCCAAG+AGG + chr4.1:40670009-40670028 None:intergenic 45.0%
TCCTGTATGTTTCCTAGCTG+CGG - chr4.1:40668598-40668617 MS.gene09107:intron 45.0%
TCTATCAAGATCAGTCGGTC+CGG - chr4.1:40670133-40670152 MS.gene09107:intron 45.0%
TCTTGGGAAGGAATTGATGG+AGG - chr4.1:40670008-40670027 MS.gene09107:intron 45.0%
TGAGGGTGGAACGTATATTC+GGG - chr4.1:40672564-40672583 MS.gene09107:intron 45.0%
TGGGTACATACAGGAGATCT+TGG - chr4.1:40671024-40671043 MS.gene09107:intron 45.0%
TGTGGGGACAAACAAGATGA+TGG - chr4.1:40673372-40673391 MS.gene09107:CDS 45.0%
TTGTTTGGGAGGACTAGAGA+AGG + chr4.1:40668374-40668393 None:intergenic 45.0%
! AGAGTTGGGCCATGGTATTT+TGG - chr4.1:40673461-40673480 MS.gene09107:CDS 45.0%
! ATCGATGAGGGCGATTTTGT+CGG + chr4.1:40668447-40668466 None:intergenic 45.0%
! ATGGGGAGGTTTGAGTTAGA+GGG - chr4.1:40669847-40669866 MS.gene09107:intron 45.0%
! CATCTTGTTTGTCCCCACAT+GGG + chr4.1:40673371-40673390 None:intergenic 45.0%
! CGGAGGGAGTATAATTCTTG+TGG - chr4.1:40672511-40672530 MS.gene09107:intron 45.0%
! GTGTCTGAGATGTGTCTAAG+GGG + chr4.1:40669111-40669130 None:intergenic 45.0%
! TCATCTTGTTTGTCCCCACA+TGG + chr4.1:40673372-40673391 None:intergenic 45.0%
!! ATTTCCCCCAACTGTTTTGG+AGG + chr4.1:40670472-40670491 None:intergenic 45.0%
!! GGGACAGTGATGACTAGTTT+AGG + chr4.1:40668704-40668723 None:intergenic 45.0%
!! TCAGCTGGAATGTTGGTTTC+AGG - chr4.1:40670403-40670422 MS.gene09107:intron 45.0%
!! TCGTTGAAGAGTATTGGGTC+TGG - chr4.1:40669976-40669995 MS.gene09107:intron 45.0%
!! TTTCCCCCAACTGTTTTGGA+GGG + chr4.1:40670471-40670490 None:intergenic 45.0%
!!! ATGGTATTTTGGCGAAGGCA+CGG - chr4.1:40673472-40673491 MS.gene09107:CDS 45.0%
!!! TGCTGTTTTCTACCCGATGT+TGG + chr4.1:40673281-40673300 None:intergenic 45.0%
AACGAGTGAGCCAACTTGAG+TGG + chr4.1:40672975-40672994 None:intergenic 50.0%
AATGAGGGGTGGGTACATAC+AGG - chr4.1:40671015-40671034 MS.gene09107:intron 50.0%
ACACCTCCTTCTCTTGACAG+TGG - chr4.1:40673528-40673547 MS.gene09107:CDS 50.0%
ACATACGCACAGCTAAGGAG+AGG - chr4.1:40669808-40669827 MS.gene09107:intron 50.0%
ACTCCCTCCAAAACAGTTGG+GGG - chr4.1:40670465-40670484 MS.gene09107:intron 50.0%
AGGAACAACAGGAGTGAGCA+AGG - chr4.1:40669651-40669670 MS.gene09107:intron 50.0%
AGTGGTGACTATAGCGCCTA+TGG + chr4.1:40668627-40668646 None:intergenic 50.0%
AGTTCCGAGACGGTGTAAAG+AGG + chr4.1:40668656-40668675 None:intergenic 50.0%
ATCCCTCCACTGTCAAGAGA+AGG + chr4.1:40673537-40673556 None:intergenic 50.0%
CACTCCCTCCAAAACAGTTG+GGG - chr4.1:40670464-40670483 MS.gene09107:intron 50.0%
CCACAAGAACTTCATCGCAG+CGG - chr4.1:40669687-40669706 MS.gene09107:intron 50.0%
CCACTCCCTCCAAAACAGTT+GGG - chr4.1:40670463-40670482 MS.gene09107:intron 50.0%
CCCAACTCTCAACTTGGAGT+GGG + chr4.1:40673450-40673469 None:intergenic 50.0%
CCCTCTTGGGAAGGAATTGA+TGG - chr4.1:40670005-40670024 MS.gene09107:intron 50.0%
CGCTGCGATGAAGTTCTTGT+GGG + chr4.1:40669689-40669708 None:intergenic 50.0%
CTCCTTCTCTTGACAGTGGA+GGG - chr4.1:40673532-40673551 MS.gene09107:CDS 50.0%
GAAGTACGGTGGTTTCGATG+GGG - chr4.1:40669830-40669849 MS.gene09107:intron 50.0%
GCCAAAGCAAGAATCATCGG+TGG + chr4.1:40669922-40669941 None:intergenic 50.0%
GCCACCGATGATTCTTGCTT+TGG - chr4.1:40669918-40669937 MS.gene09107:intron 50.0%
GGAACAACAGGAGTGAGCAA+GGG - chr4.1:40669652-40669671 MS.gene09107:intron 50.0%
GGAGGACTAGAGAAGGTCTT+AGG + chr4.1:40668367-40668386 None:intergenic 50.0%
GTGCCTTCGCCAAAATACCA+TGG + chr4.1:40673473-40673492 None:intergenic 50.0%
TCCCCACATGGGTCATAAGT+TGG + chr4.1:40673360-40673379 None:intergenic 50.0%
TCGGGAAGTAGGTCAGATTG+AGG - chr4.1:40672582-40672601 MS.gene09107:intron 50.0%
TGCTTTGGCGAAACAGAGTG+TGG - chr4.1:40669933-40669952 MS.gene09107:intron 50.0%
TGGCGAAACAGAGTGTGGTT+GGG - chr4.1:40669938-40669957 MS.gene09107:intron 50.0%
TTGGCGAAACAGAGTGTGGT+TGG - chr4.1:40669937-40669956 MS.gene09107:intron 50.0%
TTGGGGGAAATATGCGTACG+AGG - chr4.1:40670481-40670500 MS.gene09107:intron 50.0%
TTTCTGTCGGTGGCAGCTAT+AGG + chr4.1:40672726-40672745 None:intergenic 50.0%
! AAGCTATTTGAGGCACCAGC+TGG - chr4.1:40670264-40670283 MS.gene09107:intron 50.0%
! AGATTTCCTGATGACGAGGC+TGG - chr4.1:40671668-40671687 MS.gene09107:intron 50.0%
! AGCTATTTGAGGCACCAGCT+GGG - chr4.1:40670265-40670284 MS.gene09107:intron 50.0%
! AGGAAGTACGGTGGTTTCGA+TGG - chr4.1:40669828-40669847 MS.gene09107:intron 50.0%
! CCCACTCCAAGTTGAGAGTT+GGG - chr4.1:40673447-40673466 MS.gene09107:CDS 50.0%
! CCGTGTTTGATTTCTGTCGG+TGG + chr4.1:40672736-40672755 None:intergenic 50.0%
! GATGGGGAGGTTTGAGTTAG+AGG - chr4.1:40669846-40669865 MS.gene09107:intron 50.0%
! GGAAGAGTCTGCATCGATGA+GGG + chr4.1:40668459-40668478 None:intergenic 50.0%
! GGAAGTACGGTGGTTTCGAT+GGG - chr4.1:40669829-40669848 MS.gene09107:intron 50.0%
! TCGATGAGGGCGATTTTGTC+GGG + chr4.1:40668446-40668465 None:intergenic 50.0%
! TCTCAACAGGTTGGGCTGTA+GGG - chr4.1:40673407-40673426 MS.gene09107:CDS 50.0%
! TGGGGAGGTTTGAGTTAGAG+GGG - chr4.1:40669848-40669867 MS.gene09107:intron 50.0%
!! ATTCGTCATTCTGGCTCAGC+TGG - chr4.1:40670388-40670407 MS.gene09107:intron 50.0%
!! GAGGCGTTGATTGAATCAGC+AGG - chr4.1:40669562-40669581 MS.gene09107:intron 50.0%
!! TATGTTGGTGGGTTGGACCT+TGG + chr4.1:40672157-40672176 None:intergenic 50.0%
!! TTCTGGCTCAGCTGGAATGT+TGG - chr4.1:40670396-40670415 MS.gene09107:intron 50.0%
!!! TGGTATTTTGGCGAAGGCAC+GGG - chr4.1:40673473-40673492 MS.gene09107:CDS 50.0%
AGTGGATGTTGTTGGGGGAG+AGG + chr4.1:40668577-40668596 None:intergenic 55.0%
CCATGGCCCAACTCTCAACT+TGG + chr4.1:40673456-40673475 None:intergenic 55.0%
CCGCTGCGATGAAGTTCTTG+TGG + chr4.1:40669690-40669709 None:intergenic 55.0%
CCTCCACTGTCAAGAGAAGG+AGG + chr4.1:40673534-40673553 None:intergenic 55.0%
CCTCCTTCTCTTGACAGTGG+AGG - chr4.1:40673531-40673550 MS.gene09107:CDS 55.0%
CGAGGTCCCAACATGATGCA+AGG - chr4.1:40670499-40670518 MS.gene09107:CDS 55.0%
CTTGACAGTGGAGGGATCAC+AGG - chr4.1:40673540-40673559 MS.gene09107:CDS 55.0%
GCCACTCCCTCCAAAACAGT+TGG - chr4.1:40670462-40670481 MS.gene09107:intron 55.0%
GCCCAACTCTCAACTTGGAG+TGG + chr4.1:40673451-40673470 None:intergenic 55.0%
GCCGCAGCTAGGAAACATAC+AGG + chr4.1:40668602-40668621 None:intergenic 55.0%
GGCCGACATACCACTCAAGT+TGG - chr4.1:40672962-40672981 MS.gene09107:intron 55.0%
GGCTGTAGGGTACACTATGC+TGG - chr4.1:40673420-40673439 MS.gene09107:CDS 55.0%
GGTGACTATAGCGCCTATGG+AGG + chr4.1:40668624-40668643 None:intergenic 55.0%
TCCTCGGACAGCGAACTGTT+GGG + chr4.1:40671725-40671744 None:intergenic 55.0%
TGTTGTTGGGGGAGAGGATG+AGG + chr4.1:40668571-40668590 None:intergenic 55.0%
TTCCTCGGACAGCGAACTGT+TGG + chr4.1:40671726-40671745 None:intergenic 55.0%
! CCAAGTTGAGAGTTGGGCCA+TGG - chr4.1:40673453-40673472 MS.gene09107:CDS 55.0%
! CGATGAGGGCGATTTTGTCG+GGG + chr4.1:40668445-40668464 None:intergenic 55.0%
! GATGAGGGCGATTTTGTCGG+GGG + chr4.1:40668444-40668463 None:intergenic 55.0%
! GCCCACTCCAAGTTGAGAGT+TGG - chr4.1:40673446-40673465 MS.gene09107:CDS 55.0%
! GCGGCTTTGCTGTACTCATC+AGG - chr4.1:40669631-40669650 MS.gene09107:intron 55.0%
! GCTAAGGAGAGGAAGTACGG+TGG - chr4.1:40669819-40669838 MS.gene09107:intron 55.0%
! GGGAAGAGTCTGCATCGATG+AGG + chr4.1:40668460-40668479 None:intergenic 55.0%
! GTCTCAACAGGTTGGGCTGT+AGG - chr4.1:40673406-40673425 MS.gene09107:CDS 55.0%
!!! CCCAACTGTTTTGGAGGGAG+TGG + chr4.1:40670466-40670485 None:intergenic 55.0%
!!! GGGCCATGGTATTTTGGCGA+AGG - chr4.1:40673467-40673486 MS.gene09107:CDS 55.0%
ACCCAACAGTTCGCTGTCCG+AGG - chr4.1:40671721-40671740 MS.gene09107:intron 60.0%
ACCTCACCAGCCTCGTCATC+AGG + chr4.1:40671677-40671696 None:intergenic 60.0%
GTACGGTGGTTTCGATGGGG+AGG - chr4.1:40669833-40669852 MS.gene09107:intron 60.0%
TTCCTAGCTGCGGCCTCCAT+AGG - chr4.1:40668608-40668627 MS.gene09107:intron 60.0%
! GAAGGCACGGGATCTGCATG+AGG - chr4.1:40673485-40673504 MS.gene09107:CDS 60.0%
! TCCTGATGACGAGGCTGGTG+AGG - chr4.1:40671673-40671692 MS.gene09107:intron 60.0%
!! TGGTGGGTTGGACCTTGGCT+CGG + chr4.1:40672152-40672171 None:intergenic 60.0%
GCACGGGATCTGCATGAGGC+TGG - chr4.1:40673489-40673508 MS.gene09107:CDS 65.0%
!! GGTCTGGTGCTGCCCCTCTT+GGG - chr4.1:40669992-40670011 MS.gene09107:intron 65.0%
!! TGGTGCTGCCCCTCTTGGGA+AGG - chr4.1:40669996-40670015 MS.gene09107:intron 65.0%
CGCCTATGGAGGCCGCAGCT+AGG + chr4.1:40668613-40668632 None:intergenic 70.0%
!! GGGTCTGGTGCTGCCCCTCT+TGG - chr4.1:40669991-40670010 MS.gene09107:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 40668323 40673618 40668323 ID=MS.gene09107
chr4.1 mRNA 40668323 40673618 40668323 ID=MS.gene09107.t1;Parent=MS.gene09107
chr4.1 exon 40673156 40673618 40673156 ID=MS.gene09107.t1.exon1;Parent=MS.gene09107.t1
chr4.1 CDS 40673156 40673618 40673156 ID=cds.MS.gene09107.t1;Parent=MS.gene09107.t1
chr4.1 exon 40671873 40672417 40671873 ID=MS.gene09107.t1.exon2;Parent=MS.gene09107.t1
chr4.1 CDS 40671873 40672417 40671873 ID=cds.MS.gene09107.t1;Parent=MS.gene09107.t1
chr4.1 exon 40671421 40671610 40671421 ID=MS.gene09107.t1.exon3;Parent=MS.gene09107.t1
chr4.1 CDS 40671421 40671610 40671421 ID=cds.MS.gene09107.t1;Parent=MS.gene09107.t1
chr4.1 exon 40670822 40670967 40670822 ID=MS.gene09107.t1.exon4;Parent=MS.gene09107.t1
chr4.1 CDS 40670822 40670967 40670822 ID=cds.MS.gene09107.t1;Parent=MS.gene09107.t1
chr4.1 exon 40670490 40670557 40670490 ID=MS.gene09107.t1.exon5;Parent=MS.gene09107.t1
chr4.1 CDS 40670490 40670557 40670490 ID=cds.MS.gene09107.t1;Parent=MS.gene09107.t1
chr4.1 exon 40670169 40670271 40670169 ID=MS.gene09107.t1.exon6;Parent=MS.gene09107.t1
chr4.1 CDS 40670169 40670271 40670169 ID=cds.MS.gene09107.t1;Parent=MS.gene09107.t1
chr4.1 exon 40668323 40668553 40668323 ID=MS.gene09107.t1.exon7;Parent=MS.gene09107.t1
chr4.1 CDS 40668323 40668553 40668323 ID=cds.MS.gene09107.t1;Parent=MS.gene09107.t1
Gene Sequence

>MS.gene09107

ATGCAGAGATCAGGTTATGGTCCAGATGGAATATACAGGTCCCTAAGACCTTCTCTAGTCCTCCCAAACAATCCAAACCTCTCCTTAGTCTCATTCCTCTTCACAAGCGTCTCTTCTTCCCCCGACAAAATCGCCCTCATCGATGCAGACTCTTCCCAAACTCTCAACTTCTCTCAACTCAAAACACAAGTTGCAAAACTTGCACACAGTTTACTCAACCTTGGCATAAACAAAAACGACGTTGTCCTCATCCTCTCCCCCAACAACATCCACTTTCCTGTATGTTTCCTAGCTGCGGCCTCCATAGGCGCTATAGTCACCACTGCAAATCCTCTTTACACCGTCTCGGAACTCTCTAAACAAATCAAGGATTCCAATCCTAAACTAGTCATCACTGTCCCTGAATTATGGAGCAAAGTGAAGAGTTTCAGTTTCAACTTTCCTGCAATTATTATCAATTCGGGTAATATTAGATATAAAGTTAGTTAGATTGGTTAGTTATAGTCTGACTAGTTAGTTGTTGTCATCATTCACTATACTGCTATCAGTTGGTTTACTAGTGAACGCGATCACTAGTGAACTAGATTGGTTAGTTATCACCAGTTATCACTGTTCTTCATTAGCTATGTATTTGTTGCATCAGTTGTAGTCTTTGAAGCACGGACACCTCTGACATTAAGTGTGTCTCGGTGTGCGACATGTGTCAGTGTCCAACACTTGTATGGCATGTGTCAAACAAGTGTCCCAAAAAAACTTTTTTTCCTTTGCTTCGACAAACTTTTACACCCCTTAGACACATCTCAGACACTTCTACGAGGTTTAAAGGCGTGTCGAAGTAGTTATGATCAATGAAGAGGTTGAAGACATTAATTTTGATAACGTAATTTTTAACTTTTCAATATAGTAGATGGATGAATCATGTGAAAATATGTCATATTTTGTTTAAGAACTTTTTTGTAGTGTACCAAATTGCTCAGTTTAGATGTTTATTTAATATATATATATATATATATATATATATATATATATATATATATATCCTATATGCTATATGTGTCGACGTGTCCGTGTCAGAGTCCTTGCTTATAAGTTAGTTGTTCCCATCATTCGCTAGATAACTTGACTGTTATCAGTTAGTTACAGATTAGCCATATAACTGTTGCATCAGTTATTTATAGTTAACAGACTTTATATCTAATAGGTAATGTAACAGGTTCAAATTCAAACTTCACCAGTTTTGAGGCGTTGATTGAATCAGCAGGAGAAGTAACAGAATTACCAGAAAACGATGTGAAACAAAGCGATACAGCGGCTTTGCTGTACTCATCAGGAACAACAGGAGTGAGCAAGGGAGTGATACTCACCCACAAGAACTTCATCGCAGCGGCGTTAATGATTAACATGGACGATGATTTAGCAGGGGAATTAAACAACGTGTTCATCTGCGTTTTACCGATGTTTCATGTGTTTGGATTGGCGGTTATAACATACGCACAGCTAAGGAGAGGAAGTACGGTGGTTTCGATGGGGAGGTTTGAGTTAGAGGGGTTTTTGAAGGTGATTGAGAAGTATAAAGTGACGAACTTGTGGGTTGTGCCACCGATGATTCTTGCTTTGGCGAAACAGAGTGTGGTTGGGAAATATGATGTTTCTTCGTTGAAGAGTATTGGGTCTGGTGCTGCCCCTCTTGGGAAGGAATTGATGGAGGAGTGTGCTAGACGTCTACCTCATGTTGCTATTTATCAGGTAAGGTAATCTTGATCGGACAGTTAGGGAGCACACATTCACGAATTCGGACATCGGTAGCCTTTCTATCAAGATCAGTCGGTCCGGATTAAAGATAGCTATTTTAAGTTATAAAACTGAAATTAAAATCTGTAATTTTTGGAATGTTGATCTTGATGAGACGGCTACCAATGATCTGAATGTGTCATTGCATTGAAGCTATTTGAGGCACCAGCTGGGATAAAAATGATTTATTTATTAATTGATTATCTTGTACTATTAGGGGTATGGTATGACAGAAACTTGTGCCGTTGTTTCTATCGAAAATCCAAGCGTAGGTATTCGTCATTCTGGCTCAGCTGGAATGTTGGTTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCACTCCCTCCAAAACAGTTGGGGGAAATATGCGTACGAGGTCCCAACATGATGCAAGGTAAATTGTCAGCACATTCAACATTTATACTCCTGCAAATAACTCTAAGTGATTTTCCAACAGAATACAATTATATTGTACATGTAGTGTTCTTGTTATGCTTTAAGGAATTCAGTAAAAAAAATGACTTGCATTGTTGTATATGCTACTTTCTGATATACATCTATTTTTTCTATTAAAAAATTCAACTTCTTAGTGTATTTGTAAATTCTCTACCAATGAAACTTCTCTTGATCAACTAATAATTAGAAACATGAACTTTAAGTTCCTTTTCATGCTTTTAAATAACATTGTAATCATAATGCATTTTATGATCATACTTACTTGTACAAAGTCTCTGTAGAGTACAATGGCTAGCATTGTTTCTCCAAGTCTTGCAGTTTTTATATCTCCAACTTTATGATTGGAATGTAAATTTTTCCCATATGAAACTTTTCCTATACAATATTTCAGGTTATTATAACAACCCAGAGGCCACAAAACAAACTTTAGACAATGAGGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGATCGGCCAACTTTATGTTGTTGATCGTATCAAAGAACTGATCAAATACAAAGGTTATCAGGTATGTAATCTAAAATGATATCGATTGTAGTAACTAAAGTAACATATTTCATCTATTCATTATCTGAAATCTTAGCCAAATCCTTGTCACTGTTATGTTTACTTGAGCATTGGAAAGATGATATGGTATTGGTTGTATTAATCAAATGATCCTCATTAATATTTCTTAAGATCGATGGACTAGGAAATCATGTTGTGGTTACGAGGATTATTTTTGACAAGGAATTTCGCATTATGTAATATTTGTCTCTTTGAAATTAACTAGGTTGCGCCCACAGAACTTGAAGATCTTCTTGTTTCTCACCCTGAAATACAAGATGCTGTCGTTATCCCGTGAGTAAAACTTGCATGATAGTTTACGTTTGAGGGATGTTACTTACATCAAAAATTTGAAAAATATCCTAACTTGTAACAATTGGTTTGACACAGAGAAAAAAGTAATAAAAAATGAAATCGTACACCATATAAATATACTGTGATGGACAACAAAACTGTTTTCCAATTGATATTTCTCTATTAATAATTCACATTTGAGTTACTTATTGCTATAGATTTCCTGATGACGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGTTCACCCAACAGTTCGCTGTCCGAGGAAGAAATTCAGAAGTTTATTGCTAATCAGGTGAGAAAAAGCTAAGTAACAAGTTTTATCTCCACTTACAAGTTACAGCAAAAGAAACACATTTTGCAAGTTTTAAACTATGTCTGAGGAATGAAACTGTTTTTAACCCTGTATTTATGTTTTTAATGGTGGTCAACTTATTTCATTTGCCAATTTCAACTAATTTTTAAACACGCTTATAGGTTGCACCATTCAAAAGATTGCGAAGGGTTACATTCATCAACAGTGTTCCTAAGACAGCTTCAAGAAAAATTCTCAGAAGAGAGCTTATTGCAAAAGCACGATCCAAAATATAAGATATAATGCAATTTCAAAGTGTATAGTATAAGATTAACAAATATATTAAATTAAGTTCAAAATTACAAATGAATACAAGCCGAGCCAAGGTCCAACCCACCAACATAATTATTAGGCTCTTATTCTTAAAATAATATATGTATAGATTGATAAAAAAATGTCTCCAAGCATAAAAATCTACATCTATTATTGAATGGTAGAGTTATTTATTAGTTTTTTTTTCCTTTTAAGCAGAGTTATTTATTAGTTGACAACCTCAAAATAAGGCCAATATCTTCTCCTGATCCCATCATTACTATTTCCATCTGCTACAACTTCTAAATAGAGCAGAGTTGATCAAATTATACATGACCATGAACAATATTTGGCAGCATATATATAGACCACATACATCATTTATTAAATGAACCTAAAAAGTCAACTTTTGCTTATAATAGTGACCGGAGGGAGTATAATTCTTGTGGCCCCGAACATCATCCTCTAATCTCAAGTGATGAGGGTGGAACGTATATTCGGGAAGTAGGTCAGATTGAGGCAATCATTGAAGGATCTGATTGTGATTACAATCTACTAGTAACAGTAATTATAAAATGCAAACGTTTGATCTAGTTGCTTCTAGTTCAAAACATGAAATTGAAGATAATTCTTCTGAACCTATAGCTGCCACCGACAGAAATCAAACACGGAACAATCTTGCCAATGTTGCTTTAATGGATAGAATTCCAATTGAGAGAGGGGATGATGAGGTTAGAAAATCAAATATTTTTGAGTTGCAATTCAACAATATTATTGTCCGTAATTGTTTAGTCAAACTATTGTATCATGTGGTTTATAGGCAATAGTTACTTTGAAAGTACAGTCTATAAAAAGTAGGAGTGGCAAAACAGATTGAGGCCGACATACCACTCAAGTTGGCTCACTCGTTCAATAGAAAGAGTCATTATTATAAAATTTGCTGCATTTTCCATTGTTTGTCATAATAGAGTACAATGTTATATTATGTTCTTCTGTGGTTTTTAAATCTTTAAAAAAAATTATATACTTCTGTCAATGTGTTGAACAAATCAATCTAAAAATTATTCAACTGTTTTTGTATATAGCTTGCATGTGTTAGACACAGTATATAGAGGCGCTTCGAGTCTGAGATGACCAGTTTGTAAAGGAACAACTCTGTTGATACTTCCACCATAATATTGCATATGATATGTCCAACATCGGGTAGAAAACAGCACGTGCGATTGTATGTAACCTTCTAACACAGACACTTGTTTGCTGAGTTGATTAACACCAACTTATGACCCATGTGGGGACAAACAAGATGATGGAACATGTCTATGTCTCAACAGGTTGGGCTGTAGGGTACACTATGCTGGCTTGCCCACTCCAAGTTGAGAGTTGGGCCATGGTATTTTGGCGAAGGCACGGGATCTGCATGAGGCTGGTTTCACAGAGCAGTGAACACCTCCTTCTCTTGACAGTGGAGGGATCACAGGCTGCTGCATTCTGCTGCATTCTCAGCCCATATAGCTTGTCGAGCCTATCCGATTGA
Protein sequence

>MS.gene09107.t1

MQRSGYGPDGIYRSLRPSLVLPNNPNLSLVSFLFTSVSSSPDKIALIDADSSQTLNFSQLKTQVAKLAHSLLNLGINKNDVVLILSPNNIHFPVCFLAAASIGAIVTTANPLYTVSELSKQIKDSNPKLVITVPELWSKVKSFSFNFPAIIINSGNVTGSNSNFTSFEALIESAGEVTELPENDVKQSDTAALLYSSGTTGVSKGVILTHKNFIAAALMINMDDDLAGELNNVFICVLPMFHVFGLAVITYAQLRRGSTVVSMGRFELEGFLKVIEKYKVTNLWVVPPMILALAKQSVVGKYDVSSLKSIGSGAAPLGKELMEECARRLPHVAIYQGYGMTETCAVVSIENPSVGIRHSGSAGMLVSGVEAQIVSVDTQKPLPPKQLGEICVRGPNMMQGYYNNPEATKQTLDNEGWVHTGDLGYFDEIGQLYVVDRIKELIKYKGYQVAPTELEDLLVSHPEIQDAVVIPFPDDEAGEVPIAYVVRSPNSSLSEEEIQKFIANQMMEHVYVSTGWAVGYTMLACPLQVESWAMVFWRRHGICMRLVSQSSEHLLLLTVEGSQAAAFCCILSPYSLSSLSD