AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88935

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88935.t1 MTR_1g026310 94.643 560 25 1 1 555 1 560 0.0 1077
MS.gene88935.t1 MTR_8g039720 79.789 569 91 7 1 555 1 559 0.0 901
MS.gene88935.t1 MTR_1g026470 93.564 404 21 1 1 399 1 404 0.0 759
MS.gene88935.t1 MTR_1g026430 94.264 401 18 1 1 396 1 401 0.0 759
MS.gene88935.t1 MTR_4g057730 45.856 543 287 5 17 555 3 542 4.31e-163 475
MS.gene88935.t1 MTR_5g027480 43.929 560 304 6 1 555 1 555 1.35e-159 467
MS.gene88935.t1 MTR_3g088870 45.144 556 270 11 14 551 16 554 2.25e-159 466
MS.gene88935.t1 MTR_1g090737 46.875 544 273 7 15 548 22 559 3.66e-159 466
MS.gene88935.t1 MTR_3g088880 44.286 560 280 11 7 551 10 552 1.41e-156 459
MS.gene88935.t1 MTR_2g095510 43.750 544 294 6 17 555 3 539 3.64e-156 457
MS.gene88935.t1 MTR_5g027500 44.585 554 271 8 26 555 27 568 2.05e-152 449
MS.gene88935.t1 MTR_4g077900 46.680 482 247 5 80 555 1 478 3.97e-152 445
MS.gene88935.t1 MTR_1g063110 43.623 541 291 7 27 555 13 551 3.30e-146 432
MS.gene88935.t1 MTR_1g063120 43.303 545 291 7 27 555 13 555 1.69e-144 428
MS.gene88935.t1 MTR_1g073180 43.223 546 280 11 14 548 1 527 3.90e-137 409
MS.gene88935.t1 MTR_4g057730 44.280 472 256 5 17 484 3 471 2.58e-131 391
MS.gene88935.t1 MTR_1g073180 41.948 534 277 12 8 530 20 531 2.53e-123 373
MS.gene88935.t1 MTR_2g105570 39.889 539 298 8 26 547 12 541 1.16e-120 367
MS.gene88935.t1 MTR_4g057730 43.333 450 248 5 17 462 3 449 4.30e-120 362
MS.gene88935.t1 MTR_4g128337 38.593 526 317 3 26 547 17 540 2.45e-117 358
MS.gene88935.t1 MTR_3g460770 35.075 536 326 6 20 545 8 531 9.90e-116 354
MS.gene88935.t1 MTR_5g007640 38.051 544 296 6 26 547 55 579 9.83e-115 353
MS.gene88935.t1 MTR_2g095510 40.798 451 255 6 17 462 3 446 1.57e-111 340
MS.gene88935.t1 MTR_4g005750 40.377 530 302 8 26 547 11 534 2.30e-111 342
MS.gene88935.t1 MTR_1g026350 93.464 153 10 0 1 153 1 153 7.73e-100 300
MS.gene88935.t1 MTR_1569s0010 27.692 520 322 11 68 547 22 527 1.06e-54 193
MS.gene88935.t1 MTR_3g035130 28.824 510 336 13 44 545 15 505 1.63e-51 184
MS.gene88935.t1 MTR_8g074040 28.094 509 319 14 67 544 81 573 9.36e-47 173
MS.gene88935.t1 MTR_3g064420 27.308 520 331 14 65 547 37 546 1.49e-44 166
MS.gene88935.t1 MTR_5g008800 27.016 496 331 10 68 541 40 526 1.95e-43 163
MS.gene88935.t1 MTR_3g035130 29.103 457 297 13 44 492 15 452 1.01e-41 156
MS.gene88935.t1 MTR_5g076240 27.273 528 317 14 68 551 40 544 5.63e-41 156
MS.gene88935.t1 MTR_8g074040 28.261 460 283 14 116 544 12 455 1.70e-40 153
MS.gene88935.t1 MTR_5g008820 25.806 496 335 13 68 541 40 524 2.45e-39 151
MS.gene88935.t1 MTR_4g013210 28.506 435 260 12 164 554 18 445 3.28e-39 149
MS.gene88935.t1 MTR_0803s0020 25.562 489 336 12 67 541 260 734 2.14e-37 148
MS.gene88935.t1 MTR_4g011790 26.440 382 246 9 199 554 226 598 1.77e-36 144
MS.gene88935.t1 MTR_8g074120 27.101 476 304 14 98 544 23 484 2.83e-36 142
MS.gene88935.t1 MTR_2g044180 24.723 542 361 17 49 555 29 558 2.95e-36 142
MS.gene88935.t1 MTR_5g076220 25.336 521 337 11 68 551 40 545 1.41e-34 137
MS.gene88935.t1 MTR_5g076200 25.241 519 340 11 68 551 40 545 1.86e-34 137
MS.gene88935.t1 MTR_4g011790 27.110 391 241 12 199 554 226 607 2.02e-34 137
MS.gene88935.t1 MTR_4g121600 25.047 531 347 17 67 555 45 566 2.50e-34 137
MS.gene88935.t1 MTR_4g011790 25.946 370 239 9 199 542 226 586 7.60e-34 136
MS.gene88935.t1 MTR_0161s0050 26.042 576 348 17 24 551 2 547 1.04e-33 135
MS.gene88935.t1 MTR_7g084850 22.901 524 366 11 68 555 203 724 1.93e-33 135
MS.gene88935.t1 MTR_2g044180 27.660 376 246 12 197 555 101 467 2.91e-33 132
MS.gene88935.t1 MTR_4g013210 27.586 406 239 12 164 523 170 566 6.53e-33 133
MS.gene88935.t1 MTR_4g013210 29.521 376 214 14 194 554 65 404 2.47e-31 126
MS.gene88935.t1 MTR_4g013210 28.673 422 235 16 164 554 170 556 9.60e-31 126
MS.gene88935.t1 MTR_5g023730 24.803 508 336 16 67 544 42 533 1.33e-30 126
MS.gene88935.t1 MTR_8g083170 25.219 571 307 16 69 530 110 669 4.71e-29 122
MS.gene88935.t1 MTR_3g084470 25.989 531 277 17 69 493 106 626 8.85e-28 118
MS.gene88935.t1 MTR_2g030240 24.379 443 305 10 69 487 29 465 3.73e-26 112
MS.gene88935.t1 MTR_2g030240 27.243 301 196 7 204 487 77 371 5.95e-24 105
MS.gene88935.t1 MTR_3g088890 60.938 64 25 0 457 520 10 73 1.60e-22 92.4
MS.gene88935.t1 MTR_1054s0020 24.449 499 337 19 65 549 294 766 2.22e-21 99.0
MS.gene88935.t1 MTR_4g057755 57.534 73 31 0 411 483 46 118 2.82e-21 90.1
MS.gene88935.t1 MTR_1g104810 27.673 318 171 10 199 468 258 564 5.66e-21 97.4
MS.gene88935.t1 MTR_1g104810 24.891 458 259 15 62 468 74 497 7.85e-21 96.7
MS.gene88935.t1 MTR_3g087980 27.697 343 174 15 200 477 248 581 3.90e-20 94.7
MS.gene88935.t1 MTR_1g086600 25.749 334 192 11 200 482 243 571 1.09e-19 93.2
MS.gene88935.t1 MTR_1g030290 28.235 340 176 13 200 477 250 583 2.52e-19 92.4
MS.gene88935.t1 MTR_8g099420 24.365 394 226 14 146 477 162 545 4.07e-19 91.7
MS.gene88935.t1 MTR_4g066130 25.393 445 269 17 158 554 619 1048 4.93e-18 89.0
MS.gene88935.t1 MTR_2g098490 24.831 443 266 18 158 549 614 1040 6.39e-17 85.5
MS.gene88935.t1 MTR_3g084450 33.503 197 114 5 324 507 246 438 1.27e-16 83.2
MS.gene88935.t1 MTR_4g013210 28.975 283 162 12 194 472 217 464 1.49e-16 82.8
MS.gene88935.t1 MTR_3g084450 33.503 197 114 5 324 507 454 646 3.23e-16 82.4
MS.gene88935.t1 MTR_4g068670 22.672 494 298 18 62 487 72 549 2.81e-15 79.3
MS.gene88935.t1 MTR_7g109830 34.756 164 99 6 323 482 388 547 6.42e-15 78.2
MS.gene88935.t1 MTR_5g009350 22.659 331 200 10 197 477 220 544 1.03e-13 74.3
MS.gene88935.t1 MTR_5g009350 22.659 331 200 10 197 477 220 544 1.10e-13 74.3
MS.gene88935.t1 MTR_5g009350 23.030 330 198 10 198 477 221 544 1.23e-13 74.3
MS.gene88935.t1 MTR_5g009350 21.615 421 252 14 197 548 220 631 1.27e-13 74.3
MS.gene88935.t1 MTR_4g013210 25.510 294 173 10 164 421 170 453 1.54e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88935.t1 AT1G20510 74.259 540 138 1 14 553 4 542 0.0 829
MS.gene88935.t1 AT1G20500 65.280 553 171 5 13 555 9 550 0.0 734
MS.gene88935.t1 AT1G20510 73.248 471 125 1 14 484 4 473 0.0 712
MS.gene88935.t1 AT1G20480 61.250 560 205 4 4 555 10 565 0.0 705
MS.gene88935.t1 AT5G38120 61.400 557 196 7 9 555 3 550 0.0 691
MS.gene88935.t1 AT1G20510 72.606 449 122 1 14 462 4 451 0.0 675
MS.gene88935.t1 AT5G38120 60.077 521 189 7 9 519 3 514 0.0 632
MS.gene88935.t1 AT5G38120 60.288 486 174 7 9 484 3 479 0.0 588
MS.gene88935.t1 AT5G38120 60.288 486 174 7 9 484 3 479 0.0 588
MS.gene88935.t1 AT1G20490 59.346 428 159 5 13 432 9 429 2.11e-177 508
MS.gene88935.t1 AT1G20490 59.346 428 159 5 13 432 9 429 2.11e-177 508
MS.gene88935.t1 AT5G63380 42.933 566 287 8 7 551 4 554 1.60e-163 477
MS.gene88935.t1 AT4G05160 43.876 547 294 6 17 555 3 544 7.74e-157 459
MS.gene88935.t1 AT4G19010 41.441 555 299 7 15 555 20 562 3.18e-155 456
MS.gene88935.t1 AT3G21240 39.587 533 313 6 21 547 17 546 1.90e-121 369
MS.gene88935.t1 AT1G65060 40.678 531 298 6 26 547 34 556 9.96e-120 365
MS.gene88935.t1 AT1G51680 39.377 546 319 5 12 547 10 553 1.79e-112 346
MS.gene88935.t1 AT3G21230 38.745 542 311 9 22 547 24 560 1.23e-109 339
MS.gene88935.t1 AT1G62940 36.053 527 326 5 26 547 12 532 2.91e-102 319
MS.gene88935.t1 AT1G51680 37.452 518 312 5 12 519 10 525 1.32e-97 307
MS.gene88935.t1 AT3G21240 37.632 473 286 6 21 487 17 486 5.77e-97 304
MS.gene88935.t1 AT3G21240 37.632 473 286 6 21 487 17 486 5.77e-97 304
MS.gene88935.t1 AT3G21230 37.236 521 302 10 22 526 24 535 1.65e-96 304
MS.gene88935.t1 AT1G51680 37.137 482 291 5 12 483 10 489 7.58e-88 280
MS.gene88935.t1 AT3G21230 37.238 478 279 9 22 483 24 496 2.27e-87 279
MS.gene88935.t1 AT1G65060 37.277 448 264 6 26 464 34 473 4.30e-81 263
MS.gene88935.t1 AT3G21230 32.843 408 253 9 22 413 24 426 7.81e-51 181
MS.gene88935.t1 AT1G65890 28.060 531 319 18 67 551 39 552 2.02e-47 174
MS.gene88935.t1 AT1G21530 28.030 528 321 17 62 551 37 543 9.69e-47 172
MS.gene88935.t1 AT1G77240 26.136 528 342 14 58 553 32 543 2.40e-46 171
MS.gene88935.t1 AT1G21530 27.757 526 327 16 62 551 37 545 2.58e-46 171
MS.gene88935.t1 AT1G65880 28.518 533 315 19 67 551 39 553 3.03e-46 171
MS.gene88935.t1 AT3G48990 27.893 484 335 11 67 545 30 504 7.66e-46 169
MS.gene88935.t1 AT1G20560 27.002 537 351 15 34 544 14 535 1.10e-45 169
MS.gene88935.t1 AT1G66120 28.000 525 324 15 67 553 39 547 6.49e-45 167
MS.gene88935.t1 AT1G76290 27.573 515 324 16 67 551 39 534 1.23e-44 166
MS.gene88935.t1 AT1G21540 27.885 520 323 14 69 553 46 548 1.98e-44 166
MS.gene88935.t1 AT5G16370 26.437 522 329 14 74 555 43 549 1.77e-40 154
MS.gene88935.t1 AT2G17650 27.321 560 345 20 37 551 55 597 3.25e-40 154
MS.gene88935.t1 AT1G20560 27.473 455 295 13 116 544 12 457 1.16e-38 148
MS.gene88935.t1 AT5G16340 26.938 516 321 15 74 549 43 542 2.51e-38 148
MS.gene88935.t1 AT1G30520 26.940 464 295 11 64 498 34 482 2.70e-37 145
MS.gene88935.t1 AT1G30520 26.940 464 295 11 64 498 34 482 2.70e-37 145
MS.gene88935.t1 AT1G75960 26.628 522 324 15 68 551 41 541 6.29e-37 144
MS.gene88935.t1 AT1G68270 25.144 521 309 16 67 547 39 518 1.64e-34 137
MS.gene88935.t1 AT3G16170 24.672 381 245 9 199 549 234 602 2.74e-32 131
MS.gene88935.t1 AT5G36880 22.285 534 369 12 60 555 144 669 4.55e-32 131
MS.gene88935.t1 AT5G36880 22.285 534 369 12 60 555 144 669 4.55e-32 131
MS.gene88935.t1 AT5G36880 22.285 534 369 12 60 555 144 669 4.55e-32 131
MS.gene88935.t1 AT5G36880 22.285 534 369 12 60 555 144 669 4.55e-32 131
MS.gene88935.t1 AT5G36880 22.472 534 368 13 60 555 194 719 5.15e-32 131
MS.gene88935.t1 AT3G16910 22.736 519 352 15 67 547 47 554 8.01e-31 127
MS.gene88935.t1 AT1G30520 25.618 445 284 12 64 479 34 460 6.02e-30 123
MS.gene88935.t1 AT1G30520 25.618 445 284 12 64 479 34 460 6.02e-30 123
MS.gene88935.t1 AT5G36880 21.397 458 319 10 60 483 144 594 6.21e-25 109
MS.gene88935.t1 AT5G27600 27.760 317 172 9 199 468 261 567 1.96e-22 102
MS.gene88935.t1 AT3G05970 28.707 317 169 9 199 468 261 567 4.80e-20 94.7
MS.gene88935.t1 AT1G77590 27.874 348 167 14 200 477 100 433 2.75e-19 91.7
MS.gene88935.t1 AT1G77590 27.874 348 167 14 200 477 246 579 5.20e-19 91.3
MS.gene88935.t1 AT2G47240 26.571 350 200 12 182 482 147 488 7.50e-19 90.5
MS.gene88935.t1 AT2G47240 26.571 350 200 12 182 482 206 547 7.63e-19 90.9
MS.gene88935.t1 AT2G47240 26.571 350 200 12 182 482 206 547 7.63e-19 90.9
MS.gene88935.t1 AT2G47240 26.571 350 200 12 182 482 206 547 7.63e-19 90.9
MS.gene88935.t1 AT1G64400 22.312 493 306 18 55 480 65 547 8.11e-19 90.5
MS.gene88935.t1 AT1G49430 25.000 344 199 13 195 487 219 554 1.19e-16 84.0
MS.gene88935.t1 AT4G11030 20.309 453 286 13 69 456 81 523 2.25e-15 79.7
MS.gene88935.t1 AT3G23790 32.632 190 103 6 324 492 455 640 3.65e-13 72.8
MS.gene88935.t1 AT3G23790 25.203 246 153 9 68 284 111 354 5.12e-12 69.3
MS.gene88935.t1 AT4G14070 29.200 250 146 8 324 548 471 714 5.56e-12 68.9

Find 157 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGCCCAGCCTCCTTATT+TGG 0.136723 1.3:-57626 None:intergenic
TCGCTTCATACGGTGGTTTC+TGG 0.138183 1.3:+55819 MS.gene88935:CDS
CTGCTGCAAAACCCACTTCT+TGG 0.251921 1.3:-54910 None:intergenic
ACCACTTGTGCCGCCGATAC+TGG 0.271545 1.3:+55746 MS.gene88935:CDS
GTAAGTATCTTTCAAGGTTA+TGG 0.275288 1.3:+55897 MS.gene88935:CDS
TGGAGCTTCTACTGAGTCTT+TGG 0.282200 1.3:+55941 MS.gene88935:CDS
GTTCCGATGTTTCATATATA+CGG 0.342157 1.3:+55609 MS.gene88935:CDS
TGCTATGGGGCTTCTTGCTA+TGG 0.342915 1.3:+55644 MS.gene88935:CDS
TTAACTGAATCCTCTGGAAT+TGG 0.351281 1.3:+55921 MS.gene88935:CDS
AGCTCACCAGTCCGATTAAC+TGG 0.354985 1.3:-56050 None:intergenic
CTCTACTCATCAGGAACAAC+TGG 0.359656 1.3:+55477 MS.gene88935:CDS
CAAGTTGTAATGGCTAGATT+TGG 0.372468 1.3:+55549 MS.gene88935:CDS
GGAGGATGACGTCACCTTTA+CGG 0.372564 1.3:-55131 None:intergenic
TTATATCAGGTATCCAAATA+AGG 0.373402 1.3:+57613 MS.gene88935:intron
CATTAAGTACAAGGGATATC+AGG 0.379179 1.3:+57195 MS.gene88935:CDS
GGTGAATTGGTGGCCGGTGG+AGG 0.402061 1.3:-55049 None:intergenic
ATGACGGAGAGGCAGACAAC+AGG 0.402334 1.3:-55180 None:intergenic
AAGGCTGGAAGTAGCTTGTC+AGG 0.410549 1.3:+57671 MS.gene88935:CDS
AGTGAAAGCAAGAACAGGTT+TGG 0.413866 1.3:-55277 None:intergenic
TTAATCGGACTGGTGAGCTT+TGG 0.414553 1.3:+56054 MS.gene88935:CDS
TGGAGTTGGGAGAGAGGAGG+AGG 0.419067 1.3:-55149 None:intergenic
GAATTTAGAGAGAACAACTA+TGG 0.419281 1.3:-55673 None:intergenic
AAGAAACGAACCTTTCATAA+TGG 0.419398 1.3:-56090 None:intergenic
AGTAGATGGAGTTGGGAGAG+AGG 0.420482 1.3:-55155 None:intergenic
TGGTTTGGTGGAAGTGGAAG+GGG 0.421746 1.3:-54961 None:intergenic
ACTGGTGAGCTTTGGCTTCG+TGG 0.421933 1.3:+56062 MS.gene88935:CDS
ATCCATCTGGTAAAATTCTT+CGG 0.423771 1.3:+57890 MS.gene88935:CDS
AAAGAGTGGTTTGGTGGAAG+TGG 0.424298 1.3:-54967 None:intergenic
CCTTGAAAGATACTTACATT+AGG 0.428705 1.3:-55891 None:intergenic
TCCAAATAAGGAGGCTGGGC+AGG 0.431867 1.3:+57625 MS.gene88935:CDS
CCTAATGTAAGTATCTTTCA+AGG 0.432845 1.3:+55891 MS.gene88935:CDS
TGAAGATGATGATGAGTTGC+TGG 0.434313 1.3:-55367 None:intergenic
CTCAGCCGTTACCAGTTAAT+CGG 0.436385 1.3:+56039 MS.gene88935:CDS
GGTCTTGCAGTGTTTGCTAT+GGG 0.437424 1.3:+55630 MS.gene88935:CDS
CGGTCTTGCAGTGTTTGCTA+TGG 0.438320 1.3:+55629 MS.gene88935:CDS
GCTATGGGGCTTCTTGCTAT+GGG 0.440856 1.3:+55645 MS.gene88935:CDS
CTACAGCACGCCAGAGTTGT+TGG 0.441513 1.3:-55074 None:intergenic
GCAGACAACAGGGAAGTAGA+TGG 0.455653 1.3:-55169 None:intergenic
CTTGTCAGGAAGCCAAGTTA+TGG 0.458124 1.3:+57685 MS.gene88935:CDS
TTGGAAGAGAGTCGTAAGTA+TGG 0.463115 1.3:+55960 MS.gene88935:CDS
AGGCGTCAATGAAGGCGATA+TGG 0.463838 1.3:-55029 None:intergenic
GGGGCTTGTGTCTGCTTCCA+CGG 0.471317 1.3:+55989 MS.gene88935:CDS
TATGGTTTAACTGAATCCTC+TGG 0.471540 1.3:+55915 MS.gene88935:CDS
GTGGTTTGGTGGAAGTGGAA+GGG 0.473586 1.3:-54962 None:intergenic
AGAGTTGTTGGTAGGTGAAT+TGG 0.474858 1.3:-55062 None:intergenic
AGGTATCCAAATAAGGAGGC+TGG 0.481674 1.3:+57620 MS.gene88935:intron
TAACCAACCCTCTGGAGTAA+TGG 0.484888 1.3:-57104 None:intergenic
CGATTTCGCGAGATGTATTG+AGG 0.485277 1.3:-55236 None:intergenic
GCGAGATGTATTGAGGGGAT+TGG 0.486320 1.3:-55229 None:intergenic
AACAAAGCCTCTAGTTCTGC+TGG 0.486762 1.3:-57406 None:intergenic
GCCGGTGGAGGCGTCAATGA+AGG 0.490250 1.3:-55037 None:intergenic
AGTGGTTTGGTGGAAGTGGA+AGG 0.490859 1.3:-54963 None:intergenic
GCATATGTGGTAAGGAAGGC+TGG 0.491572 1.3:+57656 MS.gene88935:CDS
ATTAAGAAGATGGAGGTAAA+CGG 0.492454 1.3:+54856 None:intergenic
TGTATTGAGGGGATTGGTGG+TGG 0.493354 1.3:-55223 None:intergenic
CGATGGATTCTTATTTGTCG+TGG 0.494381 1.3:+57156 MS.gene88935:CDS
GTGGTGTTCATGAGAATGAT+TGG 0.496058 1.3:-55345 None:intergenic
GGAATAGTGAAAGCAAGAAC+AGG 0.499098 1.3:-55282 None:intergenic
CTGCAACAAAATCCATAACT+TGG 0.502133 1.3:-57697 None:intergenic
ACAGGGAAGTAGATGGAGTT+GGG 0.504299 1.3:-55162 None:intergenic
TGATTTGAGTTCGCTTCATA+CGG 0.505643 1.3:+55809 MS.gene88935:CDS
TTGGTAGGTGAATTGGTGGC+CGG 0.506146 1.3:-55055 None:intergenic
GCCACACTACTCTACTCATC+AGG 0.506955 1.3:+55468 MS.gene88935:CDS
AGTCGTAAGTATGGTACGGC+GGG 0.509532 1.3:+55969 MS.gene88935:CDS
AACAGGGAAGTAGATGGAGT+TGG 0.510251 1.3:-55163 None:intergenic
CGGCGGCACAAGTGGTAAGA+AGG 0.513016 1.3:-55739 None:intergenic
CATCGCTATGAGATTCTTGT+GGG 0.513470 1.3:-55523 None:intergenic
GCCTTCATTGACGCCTCCAC+CGG 0.515250 1.3:+55036 MS.gene88935:CDS
GAAGATACTACTCCTTTGCT+TGG 0.520592 1.3:-55501 None:intergenic
TGCCTCTCCGTCATGTCCCT+CGG 0.521898 1.3:+55189 MS.gene88935:CDS
TTCCTTACCACATATGCCAT+TGG 0.522529 1.3:-57650 None:intergenic
AGCGATGGTTCAAGTTGTAA+TGG 0.525827 1.3:+55539 MS.gene88935:CDS
CACCTCCTCACTCTCCAACA+TGG 0.527945 1.3:+55104 MS.gene88935:CDS
TCCGTTACTTCTTTACTCAA+AGG 0.528090 1.3:-55849 None:intergenic
ACCTCCTCACTCTCCAACAT+GGG 0.533332 1.3:+55105 MS.gene88935:CDS
GTTTGCTATATTGATAGCGA+TGG 0.538596 1.3:+57139 MS.gene88935:CDS
TCCAACATGGGTATCCGTAA+AGG 0.542271 1.3:+55117 MS.gene88935:CDS
ATACAAAAGAATTCGAAAAG+TGG 0.543360 1.3:+57843 MS.gene88935:CDS
GTTGGAGAGTGAGGAGGTGA+CGG 0.543649 1.3:-55100 None:intergenic
TTCCAATGGCATATGTGGTA+AGG 0.544112 1.3:+57648 MS.gene88935:CDS
ACAGCAGCATCTACAATAGC+AGG 0.544398 1.3:-57439 None:intergenic
ACCTTTACGGATACCCATGT+TGG 0.546570 1.3:-55118 None:intergenic
CTTCATACGGTGGTTTCTGG+TGG 0.547015 1.3:+55822 MS.gene88935:CDS
ATCTGGTAAAATTCTTCGGA+AGG 0.547613 1.3:+57894 MS.gene88935:CDS
GGAGGCTGGGCAGGTTCCAA+TGG 0.547827 1.3:+57634 MS.gene88935:CDS
GTAGGTGAATTGGTGGCCGG+TGG 0.552038 1.3:-55052 None:intergenic
GAAAGAGCTCATTAAGTACA+AGG 0.552506 1.3:+57186 MS.gene88935:CDS
GCATCTAAAGAGTGGTTTGG+TGG 0.553390 1.3:-54973 None:intergenic
CGTGGTCCCACCATTATGAA+AGG 0.554145 1.3:+56080 MS.gene88935:CDS
GCAGGTTCCAATGGCATATG+TGG 0.556198 1.3:+57643 MS.gene88935:CDS
ACCAGTATCGGCGGCACAAG+TGG 0.558595 1.3:-55747 None:intergenic
AAACGAACCTTTCATAATGG+TGG 0.559397 1.3:-56087 None:intergenic
TTCAGCATAGCAACCAGTAT+CGG 0.561145 1.3:-55759 None:intergenic
CCAGTCCGATTAACTGGTAA+CGG 0.565679 1.3:-56044 None:intergenic
GGTATCCAAATAAGGAGGCT+GGG 0.569081 1.3:+57621 MS.gene88935:intron
CCATCGCTATGAGATTCTTG+TGG 0.569419 1.3:-55524 None:intergenic
GTGGCATCTAAAGAGTGGTT+TGG 0.570177 1.3:-54976 None:intergenic
CCGTTACCAGTTAATCGGAC+TGG 0.573347 1.3:+56044 MS.gene88935:CDS
TTGAGTAAAGAAGTAACGGA+AGG 0.574145 1.3:+55852 MS.gene88935:CDS
AGATGTATTGAGGGGATTGG+TGG 0.576476 1.3:-55226 None:intergenic
ATCTCCTCCCGCGCTCATCA+CGG 0.577531 1.3:+55006 MS.gene88935:CDS
TCCTTTGAGTAAAGAAGTAA+CGG 0.584099 1.3:+55848 MS.gene88935:CDS
GATTTCGCGAGATGTATTGA+GGG 0.584385 1.3:-55235 None:intergenic
AATTCACCTACCAACAACTC+TGG 0.585675 1.3:+55064 MS.gene88935:CDS
AACGAACCTTTCATAATGGT+GGG 0.587290 1.3:-56086 None:intergenic
GATATGGCCGTGATGAGCGC+GGG 0.587698 1.3:-55013 None:intergenic
AGATGGAGTTGGGAGAGAGG+AGG 0.592217 1.3:-55152 None:intergenic
TGAGTAAAGAAGTAACGGAA+GGG 0.592240 1.3:+55853 MS.gene88935:CDS
GTTGTTGGTAGGTGAATTGG+TGG 0.596032 1.3:-55059 None:intergenic
AATGGCATATGTGGTAAGGA+AGG 0.598196 1.3:+57652 MS.gene88935:CDS
GTCTTGCAGTGTTTGCTATG+GGG 0.598502 1.3:+55631 MS.gene88935:CDS
CGATATGGCCGTGATGAGCG+CGG 0.598855 1.3:-55014 None:intergenic
TGACGGAGAGGCAGACAACA+GGG 0.598859 1.3:-55179 None:intergenic
TTGGAAGTGAAGGTGATGCA+TGG 0.600778 1.3:-55326 None:intergenic
CGACCATTACTCCAGAGGGT+TGG 0.603546 1.3:+57101 MS.gene88935:CDS
GATAGCGCCGAGGGACATGA+CGG 0.604148 1.3:-55196 None:intergenic
AGAGTGATCGATCCAAGAAG+TGG 0.604701 1.3:+54898 MS.gene88935:CDS
AGTGACTGAGCGCATCAACC+AGG 0.608319 1.3:+55437 MS.gene88935:CDS
TGGAAGTGAAGGTGATGCAT+GGG 0.609274 1.3:-55325 None:intergenic
ATGGCCGTGATGAGCGCGGG+AGG 0.610511 1.3:-55010 None:intergenic
CCACAAGAATCTCATAGCGA+TGG 0.611191 1.3:+55524 MS.gene88935:CDS
GGTCCCTCCAGCAGAACTAG+AGG 0.614140 1.3:+57399 MS.gene88935:intron
TTTGAGTTCGCTTCATACGG+TGG 0.616174 1.3:+55812 MS.gene88935:CDS
GGTGGTGATGATAGCGCCGA+GGG 0.619275 1.3:-55205 None:intergenic
GATACCCATGTTGGAGAGTG+AGG 0.620102 1.3:-55109 None:intergenic
ATGAGAATGATTGGAAGTGA+AGG 0.621057 1.3:-55336 None:intergenic
AGAGAGTCGTAAGTATGGTA+CGG 0.623595 1.3:+55965 MS.gene88935:CDS
AGCGCGGGAGGAGATGAAAG+TGG 0.628660 1.3:-54998 None:intergenic
GGAACAACTGGACCAAGCAA+AGG 0.634924 1.3:+55489 MS.gene88935:CDS
TCAGTCACTCTACTCAACTC+AGG 0.638010 1.3:-55423 None:intergenic
GTAGTGTGGCTGTATCATCC+TGG 0.639019 1.3:-55455 None:intergenic
AAAGCCTCTAGTTCTGCTGG+AGG 0.643862 1.3:-57403 None:intergenic
AGCATAGCAACCAGTATCGG+CGG 0.644393 1.3:-55756 None:intergenic
GGCAGGTTATTTCAGTAACG+AGG 0.647450 1.3:+57066 MS.gene88935:intron
ACATCGACCATTACTCCAGA+GGG 0.647619 1.3:+57097 MS.gene88935:CDS
AAAGAGCTCATTAAGTACAA+GGG 0.651964 1.3:+57187 MS.gene88935:CDS
GAGTGATCGATCCAAGAAGT+GGG 0.652473 1.3:+54899 MS.gene88935:CDS
AGACCGTATATATGAAACAT+CGG 0.653796 1.3:-55612 None:intergenic
GCTTGTGTCTGCTTCCACGG+AGG 0.655096 1.3:+55992 MS.gene88935:CDS
CTCTGGAGTAATGGTCGATG+TGG 0.656546 1.3:-57095 None:intergenic
AAGCCTCTAGTTCTGCTGGA+GGG 0.656701 1.3:-57402 None:intergenic
ATTTCGCGAGATGTATTGAG+GGG 0.663874 1.3:-55234 None:intergenic
GCGGGAGGAGATGAAAGTGG+TGG 0.667975 1.3:-54995 None:intergenic
AGGTTATTTCAGTAACGAGG+AGG 0.670840 1.3:+57069 MS.gene88935:intron
CGCCGAGGGACATGACGGAG+AGG 0.671164 1.3:-55191 None:intergenic
AAGTGGTGGCATCTAAAGAG+TGG 0.673146 1.3:-54981 None:intergenic
TATCAGGTATCCAAATAAGG+AGG 0.676684 1.3:+57616 MS.gene88935:intron
ACCCATGTTGGAGAGTGAGG+AGG 0.679598 1.3:-55106 None:intergenic
CACATCGACCATTACTCCAG+AGG 0.683319 1.3:+57096 MS.gene88935:CDS
TCCTGATGAGTAGAGTAGTG+TGG 0.691172 1.3:-55469 None:intergenic
GTCGTAAGTATGGTACGGCG+GGG 0.691371 1.3:+55970 MS.gene88935:CDS
AGCACGCCAGAGTTGTTGGT+AGG 0.696936 1.3:-55070 None:intergenic
AGTAGAAGCTCCAATTCCAG+AGG 0.697004 1.3:-55931 None:intergenic
TGGTGGTGATGATAGCGCCG+AGG 0.700534 1.3:-55206 None:intergenic
GTCAACAATCATAGCCTCCG+TGG 0.700669 1.3:-56006 None:intergenic
AGATGATGATGAGTTGCTGG+TGG 0.702116 1.3:-55364 None:intergenic
GAGTCGTAAGTATGGTACGG+CGG 0.704214 1.3:+55968 MS.gene88935:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAATTAATTAAAAA+AGG - chr1.3:56249-56268 None:intergenic 0.0%
!! ATTAATTTATATTCTTTGGT+AGG - chr1.3:57476-57495 None:intergenic 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG - chr1.3:56447-56466 None:intergenic 15.0%
!!! AATTTTTTTCAATATATAGG+TGG + chr1.3:57816-57835 MS.gene88935:intron 15.0%
!! AAATGGAATGAAATAATCAT+TGG - chr1.3:56574-56593 None:intergenic 20.0%
!! AGTAAAATGTCAAAATTGTT+AGG - chr1.3:56779-56798 None:intergenic 20.0%
!! ATAAACAATTCAGATTAGAT+TGG + chr1.3:56176-56195 MS.gene88935:intron 20.0%
!! TAATTAAAATATTGAACACG+AGG + chr1.3:56257-56276 MS.gene88935:intron 20.0%
!!! ATCGATATTCTAAAAAATGT+GGG - chr1.3:56684-56703 None:intergenic 20.0%
!!! GTTACTTTTTTTATGTCTAA+TGG - chr1.3:56878-56897 None:intergenic 20.0%
!!! TATCGATATTCTAAAAAATG+TGG - chr1.3:56685-56704 None:intergenic 20.0%
!!! TGTCTTTTTCTAATAAAGTA+AGG + chr1.3:56525-56544 MS.gene88935:intron 20.0%
!!! TTTTGTGTGTATATTATATC+AGG + chr1.3:57600-57619 MS.gene88935:intron 20.0%
! AAACTCACACAAATAGATAT+TGG + chr1.3:56730-56749 MS.gene88935:intron 25.0%
! AACTCACACAAATAGATATT+GGG + chr1.3:56731-56750 MS.gene88935:intron 25.0%
! AATTATAGCATATAAACTCG+TGG - chr1.3:56225-56244 None:intergenic 25.0%
! ATACAAAAGAATTCGAAAAG+TGG + chr1.3:57843-57862 MS.gene88935:CDS 25.0%
! ATATAAGCTCACATAATTGT+TGG + chr1.3:56999-57018 MS.gene88935:intron 25.0%
! CACTAAAATAATAGATGCAA+AGG + chr1.3:56937-56956 MS.gene88935:intron 25.0%
! TCTTTATTACTATTGTGTGT+CGG - chr1.3:57313-57332 None:intergenic 25.0%
! TTATATCAGGTATCCAAATA+AGG + chr1.3:57613-57632 MS.gene88935:intron 25.0%
!! ACTTTTCGAATTCTTTTGTA+TGG - chr1.3:57844-57863 None:intergenic 25.0%
!! TTTTAGTGTTATAAACACCT+TGG - chr1.3:56925-56944 None:intergenic 25.0%
!!! AATTTTACCAGATGGATTTT+TGG - chr1.3:57887-57906 None:intergenic 25.0%
!!! ACTCTTTTTTATTAGATGCT+TGG + chr1.3:57758-57777 MS.gene88935:intron 25.0%
!!! ATTTTACCAGATGGATTTTT+GGG - chr1.3:57886-57905 None:intergenic 25.0%
!!! CATAATTGTTGGTTCTATTA+TGG + chr1.3:57010-57029 MS.gene88935:intron 25.0%
!!! CTCTTTTTTATTAGATGCTT+GGG + chr1.3:57759-57778 MS.gene88935:intron 25.0%
AAAGAGCTCATTAAGTACAA+GGG + chr1.3:57187-57206 MS.gene88935:CDS 30.0%
AAGAAACGAACCTTTCATAA+TGG - chr1.3:56093-56112 None:intergenic 30.0%
ACTCACACAAATAGATATTG+GGG + chr1.3:56732-56751 MS.gene88935:intron 30.0%
AGACCGTATATATGAAACAT+CGG - chr1.3:55615-55634 None:intergenic 30.0%
ATCACTTCAACTAAATAACC+CGG + chr1.3:57270-57289 MS.gene88935:intron 30.0%
ATCCATCTGGTAAAATTCTT+CGG + chr1.3:57890-57909 MS.gene88935:CDS 30.0%
ATTAAAATGCAAGACATGGT+TGG + chr1.3:57039-57058 MS.gene88935:intron 30.0%
CCTAATGTAAGTATCTTTCA+AGG + chr1.3:55891-55910 MS.gene88935:CDS 30.0%
CCTTGAAAGATACTTACATT+AGG - chr1.3:55894-55913 None:intergenic 30.0%
CGTAAATATTGTCAAACTCA+TGG + chr1.3:57340-57359 MS.gene88935:intron 30.0%
GAATTTAGAGAGAACAACTA+TGG - chr1.3:55676-55695 None:intergenic 30.0%
GCTAATTAAAATGCAAGACA+TGG + chr1.3:57035-57054 MS.gene88935:intron 30.0%
GGTAAACAGTAATTTATCTC+CGG - chr1.3:57292-57311 None:intergenic 30.0%
GTAAACAGTAATTTATCTCC+GGG - chr1.3:57291-57310 None:intergenic 30.0%
GTAAGTATCTTTCAAGGTTA+TGG + chr1.3:55897-55916 MS.gene88935:CDS 30.0%
GTTCCGATGTTTCATATATA+CGG + chr1.3:55609-55628 MS.gene88935:CDS 30.0%
TATACACACAAAACATTCAG+CGG - chr1.3:57593-57612 None:intergenic 30.0%
TATATTCTTTGGTAGGCTTA+CGG - chr1.3:57469-57488 None:intergenic 30.0%
TCCTTTGAGTAAAGAAGTAA+CGG + chr1.3:55848-55867 MS.gene88935:CDS 30.0%
TGAATTGCTAAACAAGTTTC+CGG - chr1.3:56288-56307 None:intergenic 30.0%
TGATTGATAAGAAGGAATAC+TGG - chr1.3:57567-57586 None:intergenic 30.0%
! TGTTTTATGGTTCTTGTTAC+AGG + chr1.3:57378-57397 MS.gene88935:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG - chr1.3:56381-56400 None:intergenic 30.0%
!! TTTAAAATGAGTGTCGCTTT+AGG - chr1.3:56616-56635 None:intergenic 30.0%
!!! GACACTCATTTTAAAACAGA+GGG + chr1.3:56621-56640 MS.gene88935:intron 30.0%
!!! GTTCTCTTGCTTTTGTTTTA+TGG + chr1.3:57365-57384 MS.gene88935:intron 30.0%
AAACGAACCTTTCATAATGG+TGG - chr1.3:56090-56109 None:intergenic 35.0%
AAAGTTTGAGAGGGTAAAGT+TGG - chr1.3:56472-56491 None:intergenic 35.0%
AACGAACCTTTCATAATGGT+GGG - chr1.3:56089-56108 None:intergenic 35.0%
AATGAGAACATGTGGTCTAT+TGG + chr1.3:56340-56359 MS.gene88935:intron 35.0%
ATCTGGTAAAATTCTTCGGA+AGG + chr1.3:57894-57913 MS.gene88935:CDS 35.0%
ATGAGAATGATTGGAAGTGA+AGG - chr1.3:55339-55358 None:intergenic 35.0%
CAAGTTGTAATGGCTAGATT+TGG + chr1.3:55549-55568 MS.gene88935:CDS 35.0%
CATTAAGTACAAGGGATATC+AGG + chr1.3:57195-57214 MS.gene88935:CDS 35.0%
CTGCAACAAAATCCATAACT+TGG - chr1.3:57700-57719 None:intergenic 35.0%
GAAAGAGCTCATTAAGTACA+AGG + chr1.3:57186-57205 MS.gene88935:CDS 35.0%
GAATTGCTAAACAAGTTTCC+GGG - chr1.3:56287-56306 None:intergenic 35.0%
TAAAACAGAGGGAGTAATGT+TGG + chr1.3:56632-56651 MS.gene88935:intron 35.0%
TAATACCAGCAACTAACCAA+AGG - chr1.3:56978-56997 None:intergenic 35.0%
TAGATGCAAAGGAAAAAGCT+TGG + chr1.3:56948-56967 MS.gene88935:intron 35.0%
TATCAGGTATCCAAATAAGG+AGG + chr1.3:57616-57635 MS.gene88935:intron 35.0%
TATGGTTTAACTGAATCCTC+TGG + chr1.3:55915-55934 MS.gene88935:CDS 35.0%
TCCGTTACTTCTTTACTCAA+AGG - chr1.3:55852-55871 None:intergenic 35.0%
TCTATACCCAAAAATCCATC+TGG + chr1.3:57877-57896 MS.gene88935:CDS 35.0%
TGTGAGAGAAAAGTTTGAGA+GGG - chr1.3:56481-56500 None:intergenic 35.0%
TTGATGAGAATGAGAACATG+TGG + chr1.3:56332-56351 MS.gene88935:intron 35.0%
TTGGCACACAGATTAAGAAA+TGG - chr1.3:56591-56610 None:intergenic 35.0%
! TGAGTAAAGAAGTAACGGAA+GGG + chr1.3:55853-55872 MS.gene88935:CDS 35.0%
! TGATTTGAGTTCGCTTCATA+CGG + chr1.3:55809-55828 MS.gene88935:CDS 35.0%
! TTCCGAAGAATTTTACCAGA+TGG - chr1.3:57895-57914 None:intergenic 35.0%
! TTGAGTAAAGAAGTAACGGA+AGG + chr1.3:55852-55871 MS.gene88935:CDS 35.0%
!! ATGCATGGGTGATTTTAGAA+AGG - chr1.3:55314-55333 None:intergenic 35.0%
!! GTGATTTTAGAAAGGAGTTG+TGG - chr1.3:55306-55325 None:intergenic 35.0%
!! GTTTGCTATATTGATAGCGA+TGG + chr1.3:57139-57158 MS.gene88935:CDS 35.0%
!! TTAACTGAATCCTCTGGAAT+TGG + chr1.3:55921-55940 MS.gene88935:CDS 35.0%
!!! CGACACTCATTTTAAAACAG+AGG + chr1.3:56620-56639 MS.gene88935:intron 35.0%
AATGGCATATGTGGTAAGGA+AGG + chr1.3:57652-57671 MS.gene88935:CDS 40.0%
AATTCACCTACCAACAACTC+TGG + chr1.3:55064-55083 MS.gene88935:CDS 40.0%
AGAGAGTCGTAAGTATGGTA+CGG + chr1.3:55965-55984 MS.gene88935:CDS 40.0%
AGCGGTCTTGATTGATAAGA+AGG - chr1.3:57575-57594 None:intergenic 40.0%
AGTCATGCACGTCTAATGAA+TGG - chr1.3:56900-56919 None:intergenic 40.0%
AGTGAAAGCAAGAACAGGTT+TGG - chr1.3:55280-55299 None:intergenic 40.0%
ATTTCGCGAGATGTATTGAG+GGG - chr1.3:55237-55256 None:intergenic 40.0%
CATCGCTATGAGATTCTTGT+GGG - chr1.3:55526-55545 None:intergenic 40.0%
GAAGATACTACTCCTTTGCT+TGG - chr1.3:55504-55523 None:intergenic 40.0%
GATTTCGCGAGATGTATTGA+GGG - chr1.3:55238-55257 None:intergenic 40.0%
GGAAAGACAAAACATCCAGA+TGG + chr1.3:56197-56216 MS.gene88935:intron 40.0%
GGAATAGTGAAAGCAAGAAC+AGG - chr1.3:55285-55304 None:intergenic 40.0%
GTGGTGTTCATGAGAATGAT+TGG - chr1.3:55348-55367 None:intergenic 40.0%
GTGTGAGAGAAAAGTTTGAG+AGG - chr1.3:56482-56501 None:intergenic 40.0%
GTTGGTCATATGCTTGACTT+AGG + chr1.3:56650-56669 MS.gene88935:intron 40.0%
TAGTTGAAGTGATCGAAACG+TGG - chr1.3:57263-57282 None:intergenic 40.0%
TATAAACTCGTGGATCCATC+TGG - chr1.3:56215-56234 None:intergenic 40.0%
TTCAGCATAGCAACCAGTAT+CGG - chr1.3:55762-55781 None:intergenic 40.0%
TTCCAATGGCATATGTGGTA+AGG + chr1.3:57648-57667 MS.gene88935:CDS 40.0%
TTCCTTACCACATATGCCAT+TGG - chr1.3:57653-57672 None:intergenic 40.0%
TTGGAAGAGAGTCGTAAGTA+TGG + chr1.3:55960-55979 MS.gene88935:CDS 40.0%
! ACTGTTTGAGTTCGAACTTG+TGG + chr1.3:56796-56815 MS.gene88935:intron 40.0%
! AGAGTTGTTGGTAGGTGAAT+TGG - chr1.3:55065-55084 None:intergenic 40.0%
! AGGTTATTTCAGTAACGAGG+AGG + chr1.3:57069-57088 MS.gene88935:intron 40.0%
! CGATGGATTCTTATTTGTCG+TGG + chr1.3:57156-57175 MS.gene88935:CDS 40.0%
! CTGTTTGAGTTCGAACTTGT+GGG + chr1.3:56797-56816 MS.gene88935:intron 40.0%
! TATGGATTTTGTTGCAGAGC+AGG + chr1.3:57703-57722 MS.gene88935:CDS 40.0%
! TGAAGATGATGATGAGTTGC+TGG - chr1.3:55370-55389 None:intergenic 40.0%
!! AGAGGGTTGGTTAAAAACAG+GGG + chr1.3:57114-57133 MS.gene88935:CDS 40.0%
!! AGCGATGGTTCAAGTTGTAA+TGG + chr1.3:55539-55558 MS.gene88935:CDS 40.0%
!! CAGAGGGTTGGTTAAAAACA+GGG + chr1.3:57113-57132 MS.gene88935:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - chr1.3:56377-56396 None:intergenic 40.0%
AACAGGGAAGTAGATGGAGT+TGG - chr1.3:55166-55185 None:intergenic 45.0%
AAGTGGTGGCATCTAAAGAG+TGG - chr1.3:54984-55003 None:intergenic 45.0%
ACAGCAGCATCTACAATAGC+AGG - chr1.3:57442-57461 None:intergenic 45.0%
ACAGGGAAGTAGATGGAGTT+GGG - chr1.3:55165-55184 None:intergenic 45.0%
ACATCGACCATTACTCCAGA+GGG + chr1.3:57097-57116 MS.gene88935:CDS 45.0%
ACCTTTACGGATACCCATGT+TGG - chr1.3:55121-55140 None:intergenic 45.0%
AGAGTGATCGATCCAAGAAG+TGG + chr1.3:54898-54917 MS.gene88935:CDS 45.0%
AGATATTGGGGATCGAATCC+TGG + chr1.3:56744-56763 MS.gene88935:intron 45.0%
AGATGTATTGAGGGGATTGG+TGG - chr1.3:55229-55248 None:intergenic 45.0%
AGGTATCCAAATAAGGAGGC+TGG + chr1.3:57620-57639 MS.gene88935:intron 45.0%
AGTAGAAGCTCCAATTCCAG+AGG - chr1.3:55934-55953 None:intergenic 45.0%
CCACAAGAATCTCATAGCGA+TGG + chr1.3:55524-55543 MS.gene88935:CDS 45.0%
CCAGTCCGATTAACTGGTAA+CGG - chr1.3:56047-56066 None:intergenic 45.0%
CCATCGCTATGAGATTCTTG+TGG - chr1.3:55527-55546 None:intergenic 45.0%
CGATTTCGCGAGATGTATTG+AGG - chr1.3:55239-55258 None:intergenic 45.0%
CTCAGCCGTTACCAGTTAAT+CGG + chr1.3:56039-56058 MS.gene88935:CDS 45.0%
CTCTACTCATCAGGAACAAC+TGG + chr1.3:55477-55496 MS.gene88935:CDS 45.0%
CTTGTCAGGAAGCCAAGTTA+TGG + chr1.3:57685-57704 MS.gene88935:CDS 45.0%
GAGTGATCGATCCAAGAAGT+GGG + chr1.3:54899-54918 MS.gene88935:CDS 45.0%
GGTATCCAAATAAGGAGGCT+GGG + chr1.3:57621-57640 MS.gene88935:intron 45.0%
GTGGCATCTAAAGAGTGGTT+TGG - chr1.3:54979-54998 None:intergenic 45.0%
TATTGAACACGAGGTAGACC+CGG + chr1.3:56266-56285 MS.gene88935:intron 45.0%
TCAGTCACTCTACTCAACTC+AGG - chr1.3:55426-55445 None:intergenic 45.0%
TCCAACATGGGTATCCGTAA+AGG + chr1.3:55117-55136 MS.gene88935:CDS 45.0%
TCCTGATGAGTAGAGTAGTG+TGG - chr1.3:55472-55491 None:intergenic 45.0%
TGGAAGTGAAGGTGATGCAT+GGG - chr1.3:55328-55347 None:intergenic 45.0%
TGGAGCTTCTACTGAGTCTT+TGG + chr1.3:55941-55960 MS.gene88935:CDS 45.0%
TTGGAAGTGAAGGTGATGCA+TGG - chr1.3:55329-55348 None:intergenic 45.0%
! AGATGATGATGAGTTGCTGG+TGG - chr1.3:55367-55386 None:intergenic 45.0%
! GAAAAAGCTTGGTGAGCCTT+TGG + chr1.3:56959-56978 MS.gene88935:intron 45.0%
! GCAGAGCAGGTTTGTTTGTT+TGG + chr1.3:57716-57735 MS.gene88935:intron 45.0%
! GCATCTAAAGAGTGGTTTGG+TGG - chr1.3:54976-54995 None:intergenic 45.0%
! GGCAGGTTATTTCAGTAACG+AGG + chr1.3:57066-57085 MS.gene88935:intron 45.0%
! GTTGTTGGTAGGTGAATTGG+TGG - chr1.3:55062-55081 None:intergenic 45.0%
! TTTGAGTTCGCTTCATACGG+TGG + chr1.3:55812-55831 MS.gene88935:CDS 45.0%
!! AAAGAGTGGTTTGGTGGAAG+TGG - chr1.3:54970-54989 None:intergenic 45.0%
!! AACAAAGCCTCTAGTTCTGC+TGG - chr1.3:57409-57428 None:intergenic 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG - chr1.3:56610-56629 None:intergenic 45.0%
!! ATGCAAGACATGGTTGGTGA+TGG + chr1.3:57045-57064 MS.gene88935:intron 45.0%
!! CCAGAGGGTTGGTTAAAAAC+AGG + chr1.3:57112-57131 MS.gene88935:CDS 45.0%
!! GGTCTTGCAGTGTTTGCTAT+GGG + chr1.3:55630-55649 MS.gene88935:CDS 45.0%
!! GTCTTGCAGTGTTTGCTATG+GGG + chr1.3:55631-55650 MS.gene88935:CDS 45.0%
!! TAACCAACCCTCTGGAGTAA+TGG - chr1.3:57107-57126 None:intergenic 45.0%
!! TTAATCGGACTGGTGAGCTT+TGG + chr1.3:56054-56073 MS.gene88935:CDS 45.0%
!!! CCTGTTTTTAACCAACCCTC+TGG - chr1.3:57115-57134 None:intergenic 45.0%
!! TATAATTAATTTATATTCTT+TGG - chr1.3:57480-57499 None:intergenic 5.0%
!!! ATTAATTTTTTTCAATATAT+AGG + chr1.3:57813-57832 MS.gene88935:intron 5.0%
!!! ATTTATTTTTTATAATATGA+TGG + chr1.3:57532-57551 MS.gene88935:intron 5.0%
ACCTCCTCACTCTCCAACAT+GGG + chr1.3:55105-55124 MS.gene88935:CDS 50.0%
AGCTCACCAGTCCGATTAAC+TGG - chr1.3:56053-56072 None:intergenic 50.0%
AGGCGTCAATGAAGGCGATA+TGG - chr1.3:55032-55051 None:intergenic 50.0%
AGTAGATGGAGTTGGGAGAG+AGG - chr1.3:55158-55177 None:intergenic 50.0%
AGTCGTAAGTATGGTACGGC+GGG + chr1.3:55969-55988 MS.gene88935:CDS 50.0%
ATTGTTAGGCAGAGCACACC+AGG - chr1.3:56765-56784 None:intergenic 50.0%
CACATCGACCATTACTCCAG+AGG + chr1.3:57096-57115 MS.gene88935:CDS 50.0%
CCGTTACCAGTTAATCGGAC+TGG + chr1.3:56044-56063 MS.gene88935:CDS 50.0%
CGTGGTCCCACCATTATGAA+AGG + chr1.3:56080-56099 MS.gene88935:CDS 50.0%
CTGCTGCAAAACCCACTTCT+TGG - chr1.3:54913-54932 None:intergenic 50.0%
GAGTCGTAAGTATGGTACGG+CGG + chr1.3:55968-55987 MS.gene88935:CDS 50.0%
GATACCCATGTTGGAGAGTG+AGG - chr1.3:55112-55131 None:intergenic 50.0%
GCAGACAACAGGGAAGTAGA+TGG - chr1.3:55172-55191 None:intergenic 50.0%
GCAGGTTCCAATGGCATATG+TGG + chr1.3:57643-57662 MS.gene88935:CDS 50.0%
GCATATGTGGTAAGGAAGGC+TGG + chr1.3:57656-57675 MS.gene88935:CDS 50.0%
GCCACACTACTCTACTCATC+AGG + chr1.3:55468-55487 MS.gene88935:CDS 50.0%
GCGAGATGTATTGAGGGGAT+TGG - chr1.3:55232-55251 None:intergenic 50.0%
GGAACAACTGGACCAAGCAA+AGG + chr1.3:55489-55508 MS.gene88935:CDS 50.0%
GGAGGATGACGTCACCTTTA+CGG - chr1.3:55134-55153 None:intergenic 50.0%
GTAGTGTGGCTGTATCATCC+TGG - chr1.3:55458-55477 None:intergenic 50.0%
GTCAACAATCATAGCCTCCG+TGG - chr1.3:56009-56028 None:intergenic 50.0%
TAGACGTGCATGACTCTCCA+AGG + chr1.3:56905-56924 MS.gene88935:intron 50.0%
TCGCTTCATACGGTGGTTTC+TGG + chr1.3:55819-55838 MS.gene88935:CDS 50.0%
TGCTATGGGGCTTCTTGCTA+TGG + chr1.3:55644-55663 MS.gene88935:CDS 50.0%
! AAGGCTGGAAGTAGCTTGTC+AGG + chr1.3:57671-57690 MS.gene88935:CDS 50.0%
! AGCATAGCAACCAGTATCGG+CGG - chr1.3:55759-55778 None:intergenic 50.0%
! CGGTCTTGCAGTGTTTGCTA+TGG + chr1.3:55629-55648 MS.gene88935:CDS 50.0%
! CTTCATACGGTGGTTTCTGG+TGG + chr1.3:55822-55841 MS.gene88935:CDS 50.0%
! GCTATGGGGCTTCTTGCTAT+GGG + chr1.3:55645-55664 MS.gene88935:CDS 50.0%
! GTGAGCCTTTGGTTAGTTGC+TGG + chr1.3:56970-56989 MS.gene88935:intron 50.0%
! TGTATTGAGGGGATTGGTGG+TGG - chr1.3:55226-55245 None:intergenic 50.0%
! TTGGTAGGTGAATTGGTGGC+CGG - chr1.3:55058-55077 None:intergenic 50.0%
!! AAAGCCTCTAGTTCTGCTGG+AGG - chr1.3:57406-57425 None:intergenic 50.0%
!! AAGACATGGTTGGTGATGGC+AGG + chr1.3:57049-57068 MS.gene88935:intron 50.0%
!! AAGCCTCTAGTTCTGCTGGA+GGG - chr1.3:57405-57424 None:intergenic 50.0%
!! AGTGGTTTGGTGGAAGTGGA+AGG - chr1.3:54966-54985 None:intergenic 50.0%
!! CTCTGGAGTAATGGTCGATG+TGG - chr1.3:57098-57117 None:intergenic 50.0%
!! GTGGTTTGGTGGAAGTGGAA+GGG - chr1.3:54965-54984 None:intergenic 50.0%
!! TGGTTTGGTGGAAGTGGAAG+GGG - chr1.3:54964-54983 None:intergenic 50.0%
ACCCATGTTGGAGAGTGAGG+AGG - chr1.3:55109-55128 None:intergenic 55.0%
ACCTGCCCAGCCTCCTTATT+TGG - chr1.3:57629-57648 None:intergenic 55.0%
AGATGGAGTTGGGAGAGAGG+AGG - chr1.3:55155-55174 None:intergenic 55.0%
AGCACGCCAGAGTTGTTGGT+AGG - chr1.3:55073-55092 None:intergenic 55.0%
AGTGACTGAGCGCATCAACC+AGG + chr1.3:55437-55456 MS.gene88935:CDS 55.0%
CACCTCCTCACTCTCCAACA+TGG + chr1.3:55104-55123 MS.gene88935:CDS 55.0%
CGACCATTACTCCAGAGGGT+TGG + chr1.3:57101-57120 MS.gene88935:CDS 55.0%
CTACAGCACGCCAGAGTTGT+TGG - chr1.3:55077-55096 None:intergenic 55.0%
GTCGTAAGTATGGTACGGCG+GGG + chr1.3:55970-55989 MS.gene88935:CDS 55.0%
GTTGGAGAGTGAGGAGGTGA+CGG - chr1.3:55103-55122 None:intergenic 55.0%
TCCAAATAAGGAGGCTGGGC+AGG + chr1.3:57625-57644 MS.gene88935:CDS 55.0%
TGACGGAGAGGCAGACAACA+GGG - chr1.3:55182-55201 None:intergenic 55.0%
! ACTGGTGAGCTTTGGCTTCG+TGG + chr1.3:56062-56081 MS.gene88935:CDS 55.0%
! ATGACGGAGAGGCAGACAAC+AGG - chr1.3:55183-55202 None:intergenic 55.0%
ACCACTTGTGCCGCCGATAC+TGG + chr1.3:55746-55765 MS.gene88935:CDS 60.0%
AGCGCGGGAGGAGATGAAAG+TGG - chr1.3:55001-55020 None:intergenic 60.0%
ATCTCCTCCCGCGCTCATCA+CGG + chr1.3:55006-55025 MS.gene88935:CDS 60.0%
CGATATGGCCGTGATGAGCG+CGG - chr1.3:55017-55036 None:intergenic 60.0%
CGGCGGCACAAGTGGTAAGA+AGG - chr1.3:55742-55761 None:intergenic 60.0%
GATATGGCCGTGATGAGCGC+GGG - chr1.3:55016-55035 None:intergenic 60.0%
GCCTTCATTGACGCCTCCAC+CGG + chr1.3:55036-55055 MS.gene88935:CDS 60.0%
GCGGGAGGAGATGAAAGTGG+TGG - chr1.3:54998-55017 None:intergenic 60.0%
GCTTGTGTCTGCTTCCACGG+AGG + chr1.3:55992-56011 MS.gene88935:CDS 60.0%
GGGGCTTGTGTCTGCTTCCA+CGG + chr1.3:55989-56008 MS.gene88935:CDS 60.0%
GGTCCCTCCAGCAGAACTAG+AGG + chr1.3:57399-57418 MS.gene88935:intron 60.0%
TGCCTCTCCGTCATGTCCCT+CGG + chr1.3:55189-55208 MS.gene88935:CDS 60.0%
TGGAGTTGGGAGAGAGGAGG+AGG - chr1.3:55152-55171 None:intergenic 60.0%
! GATAGCGCCGAGGGACATGA+CGG - chr1.3:55199-55218 None:intergenic 60.0%
! GGTGGTGATGATAGCGCCGA+GGG - chr1.3:55208-55227 None:intergenic 60.0%
! GTAGGTGAATTGGTGGCCGG+TGG - chr1.3:55055-55074 None:intergenic 60.0%
! TGGTGGTGATGATAGCGCCG+AGG - chr1.3:55209-55228 None:intergenic 60.0%
!! ACCAGTATCGGCGGCACAAG+TGG - chr1.3:55750-55769 None:intergenic 60.0%
GGAGGCTGGGCAGGTTCCAA+TGG + chr1.3:57634-57653 MS.gene88935:CDS 65.0%
! GGTGAATTGGTGGCCGGTGG+AGG - chr1.3:55052-55071 None:intergenic 65.0%
!! GCCGGTGGAGGCGTCAATGA+AGG - chr1.3:55040-55059 None:intergenic 65.0%
ATGGCCGTGATGAGCGCGGG+AGG - chr1.3:55013-55032 None:intergenic 70.0%
! CGCCGAGGGACATGACGGAG+AGG - chr1.3:55194-55213 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 54865 57948 54865 ID=MS.gene88935
chr1.3 mRNA 54865 57948 54865 ID=MS.gene88935.t1;Parent=MS.gene88935
chr1.3 exon 54865 56101 54865 ID=MS.gene88935.t1.exon1;Parent=MS.gene88935.t1
chr1.3 CDS 54865 56101 54865 ID=cds.MS.gene88935.t1;Parent=MS.gene88935.t1
chr1.3 exon 57071 57216 57071 ID=MS.gene88935.t1.exon2;Parent=MS.gene88935.t1
chr1.3 CDS 57071 57216 57071 ID=cds.MS.gene88935.t1;Parent=MS.gene88935.t1
chr1.3 exon 57400 57467 57400 ID=MS.gene88935.t1.exon3;Parent=MS.gene88935.t1
chr1.3 CDS 57400 57467 57400 ID=cds.MS.gene88935.t1;Parent=MS.gene88935.t1
chr1.3 exon 57622 57724 57622 ID=MS.gene88935.t1.exon4;Parent=MS.gene88935.t1
chr1.3 CDS 57622 57724 57622 ID=cds.MS.gene88935.t1;Parent=MS.gene88935.t1
chr1.3 exon 57835 57948 57835 ID=MS.gene88935.t1.exon5;Parent=MS.gene88935.t1
chr1.3 CDS 57835 57948 57835 ID=cds.MS.gene88935.t1;Parent=MS.gene88935.t1
Gene Sequence

>MS.gene88935

ATGGAGGTAAACGGTGAGAATACGAATAGCAGAAGAGTGATCGATCCAAGAAGTGGGTTTTGCAGCAGCAATTCAATCTTCTACAGCAAGAGAAAACCCCTTCCACTTCCACCAAACCACTCTTTAGATGCCACCACTTTCATCTCCTCCCGCGCTCATCACGGCCATATCGCCTTCATTGACGCCTCCACCGGCCACCAATTCACCTACCAACAACTCTGGCGTGCTGTAGACTCCGTCACCTCCTCACTCTCCAACATGGGTATCCGTAAAGGTGACGTCATCCTCCTCCTCTCTCCCAACTCCATCTACTTCCCTGTTGTCTGCCTCTCCGTCATGTCCCTCGGCGCTATCATCACCACCACCAATCCCCTCAATACATCTCGCGAAATCGCTAAACAGATCGCTGATTCCAAACCTGTTCTTGCTTTCACTATTCCACAACTCCTTTCTAAAATCACCCATGCATCACCTTCACTTCCAATCATTCTCATGAACACCACCAGCAACTCATCATCATCTTCAACAACAACACTTGATGAAATGATGAAGAAAGAACCTGAGTTGAGTAGAGTGACTGAGCGCATCAACCAGGATGATACAGCCACACTACTCTACTCATCAGGAACAACTGGACCAAGCAAAGGAGTAGTATCTTCCCACAAGAATCTCATAGCGATGGTTCAAGTTGTAATGGCTAGATTTGGTAAAGAACAAGAGACGAGAGAAACTTTCATATGCACTGTTCCGATGTTTCATATATACGGTCTTGCAGTGTTTGCTATGGGGCTTCTTGCTATGGGTTCAACCATAGTTGTTCTCTCTAAATTCGAGATGCATGACATGCTTTCATCTATTGAGAAATTCAGAGCAACCTTCTTACCACTTGTGCCGCCGATACTGGTTGCTATGCTGAACAACGCAGATGCGATTAAGAGAAAGTATGATTTGAGTTCGCTTCATACGGTGGTTTCTGGTGGTGCTCCTTTGAGTAAAGAAGTAACGGAAGGGTTTATAGAAAAGTATCCTAATGTAAGTATCTTTCAAGGTTATGGTTTAACTGAATCCTCTGGAATTGGAGCTTCTACTGAGTCTTTGGAAGAGAGTCGTAAGTATGGTACGGCGGGGCTTGTGTCTGCTTCCACGGAGGCTATGATTGTTGACACTGAGACTGCTCAGCCGTTACCAGTTAATCGGACTGGTGAGCTTTGGCTTCGTGGTCCCACCATTATGAAAGGTTCGTTTCTTTTCAAATGTCGTCGCTTTGTTTCTAATTTAATTGATCTTTTGATTCTGAAGATCGCTCTTTTAATAAACAATTCAGATTAGATTGGAAAGACAAAACATCCAGATGGATCCACGAGTTTATATGCTATAATTTCCTTTTTTAATTAATTAAAATATTGAACACGAGGTAGACCCGGAAACTTGTTTAGCAATTCAGAGTTTATATATTTGTATTTGTAGTTGATGAGAATGAGAACATGTGGTCTATTGGAATTTAATACTCCATCCGTTTCAAAATGAGTGTCACTTTAAGCAAAAAAATTTGTTTCAAAATGAATGTCGCTTTACATTTCCAATACAACTTTAATTTTTTTCTTCCAACTTTACCCTCTCAAACTTTTCTCTCACACAATTTTCAATGCAACTTTAAGTTTGTCTTTTTCTAATAAAGTAAGGACAGTTTAGTAAAAGCGTTATATCCAATGATTATTTCATTCCATTTCTTAATCTGTGTGCCAAAGCCTAAAGCGACACTCATTTTAAAACAGAGGGAGTAATGTTGGTCATATGCTTGACTTAGGCTATATATCCCACATTTTTTAGAATATCGATAGACAAAATGACAAAACATTTATTACAAACTCACACAAATAGATATTGGGGATCGAATCCTGGTGTGCTCTGCCTAACAATTTTGACATTTTACTGTTTGAGTTCGAACTTGTGGGCTTTCGCTTTTCTAATTTAATAAATTTAATTTTTATTTAATAAAAAAAGAAGTAACCATTAGACATAAAAAAAGTAACCATTCATTAGACGTGCATGACTCTCCAAGGTGTTTATAACACTAAAATAATAGATGCAAAGGAAAAAGCTTGGTGAGCCTTTGGTTAGTTGCTGGTATTAGATATAAGCTCACATAATTGTTGGTTCTATTATGGATGCTAATTAAAATGCAAGACATGGTTGGTGATGGCAGGTTATTTCAGTAACGAGGAGGCAACCACATCGACCATTACTCCAGAGGGTTGGTTAAAAACAGGGGATGTTTGCTATATTGATAGCGATGGATTCTTATTTGTCGTGGATCGCTTGAAAGAGCTCATTAAGTACAAGGGATATCAGGTTATTATCAACAATTCTATCTAATCTAATGCAATATTCACAACCACGTTTCGATCACTTCAACTAAATAACCCGGAGATAAATTACTGTTTACCGACACACAATAGTAATAAAGATTATAAACGTAAATATTGTCAAACTCATGGAAGTTCTCTTGCTTTTGTTTTATGGTTCTTGTTACAGGTCCCTCCAGCAGAACTAGAGGCTTTGTTGCTGACTCATCCTGCTATTGTAGATGCTGCTGTCATACCGTAAGCCTACCAAAGAATATAAATTAATTATAGTATCTTAATTTTAGTTTTTTTGTCTGCTTTGATTTATTTTTTATAATATGATGGTGACGAAAACCAGTATTCCTTCTTATCAATCAAGACCGCTGAATGTTTTGTGTGTATATTATATCAGGTATCCAAATAAGGAGGCTGGGCAGGTTCCAATGGCATATGTGGTAAGGAAGGCTGGAAGTAGCTTGTCAGGAAGCCAAGTTATGGATTTTGTTGCAGAGCAGGTTTGTTTGTTTGGAACACTTCTCAACAATGACACTCTTTTTTATTAGATGCTTGGGTTTTGATTTCAACTATGAGATTGAAAACTAAATTAATTTTTTTCAATATATAGGTGGCTCCATACAAAAGAATTCGAAAAGTGGCATTTATATCTTCTATACCCAAAAATCCATCTGGTAAAATTCTTCGGAAGGATCTTATCAAGCTAGCTACGTCTAAACTTTGA
Protein sequence

>MS.gene88935.t1

MEVNGENTNSRRVIDPRSGFCSSNSIFYSKRKPLPLPPNHSLDATTFISSRAHHGHIAFIDASTGHQFTYQQLWRAVDSVTSSLSNMGIRKGDVILLLSPNSIYFPVVCLSVMSLGAIITTTNPLNTSREIAKQIADSKPVLAFTIPQLLSKITHASPSLPIILMNTTSNSSSSSTTTLDEMMKKEPELSRVTERINQDDTATLLYSSGTTGPSKGVVSSHKNLIAMVQVVMARFGKEQETRETFICTVPMFHIYGLAVFAMGLLAMGSTIVVLSKFEMHDMLSSIEKFRATFLPLVPPILVAMLNNADAIKRKYDLSSLHTVVSGGAPLSKEVTEGFIEKYPNVSIFQGYGLTESSGIGASTESLEESRKYGTAGLVSASTEAMIVDTETAQPLPVNRTGELWLRGPTIMKGYFSNEEATTSTITPEGWLKTGDVCYIDSDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPAIVDAAVIPYPNKEAGQVPMAYVVRKAGSSLSGSQVMDFVAEQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL