Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33955.t1 | XP_013469523.1 | 95.3 | 212 | 10 | 0 | 1 | 212 | 1 | 212 | 5.60E-106 | 393.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33955.t1 | P51412 | 48.4 | 223 | 94 | 5 | 4 | 209 | 2 | 220 | 3.4e-43 | 176.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33955.t1 | A0A072VPH5 | 95.3 | 212 | 10 | 0 | 1 | 212 | 1 | 212 | 4.0e-106 | 393.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene33955 | 0.801911 | 7.20E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene33955 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene33955 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene049615 | MS.gene33955 | 0.818711 | 1.70E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene33955 | 0.835855 | 1.32E-56 | -1.69E-46 |
| MS.gene050165 | MS.gene33955 | 0.82757 | 1.45E-54 | -1.69E-46 |
| MS.gene050538 | MS.gene33955 | 0.806816 | 6.85E-50 | -1.69E-46 |
| MS.gene050781 | MS.gene33955 | 0.802172 | 6.36E-49 | -1.69E-46 |
| MS.gene05100 | MS.gene33955 | 0.842866 | 1.99E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene33955 | 0.830101 | 3.55E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene33955 | 0.818926 | 1.52E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene33955 | 0.810232 | 1.28E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene33955 | 0.802784 | 4.76E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene33955 | 0.818493 | 1.90E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene33955 | 0.814973 | 1.17E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene33955 | 0.832655 | 8.35E-56 | -1.69E-46 |
| MS.gene055212 | MS.gene33955 | 0.807749 | 4.34E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene33955 | 0.810189 | 1.30E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene33955 | 0.825182 | 5.39E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene33955 | 0.803793 | 2.94E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene33955 | 0.814657 | 1.38E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene33955 | 0.841605 | 4.29E-58 | -1.69E-46 |
| MS.gene058019 | MS.gene33955 | 0.83497 | 2.20E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene33955 | 0.802768 | 4.80E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene33955 | 0.815896 | 7.31E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene33955 | 0.810895 | 9.18E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene33955 | 0.80917 | 2.16E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene33955 | 0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene33955 | 0.833407 | 5.43E-56 | -1.69E-46 |
| MS.gene060804 | MS.gene33955 | 0.80874 | 2.67E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene33955 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene061041 | MS.gene33955 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene33955 | 0.836152 | 1.11E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33955.t1 | MTR_1g096460 | 95.283 | 212 | 10 | 0 | 1 | 212 | 1 | 212 | 9.71e-134 | 374 |
| MS.gene33955.t1 | MTR_7g111750 | 50.476 | 105 | 52 | 0 | 93 | 197 | 161 | 265 | 1.18e-21 | 90.5 |
| MS.gene33955.t1 | MTR_7g111750 | 50.476 | 105 | 52 | 0 | 93 | 197 | 171 | 275 | 1.67e-21 | 90.1 |
| MS.gene33955.t1 | MTR_2g058400 | 50.476 | 105 | 52 | 0 | 93 | 197 | 239 | 343 | 8.83e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33955.t1 | AT1G35680 | 50.000 | 226 | 90 | 7 | 1 | 209 | 1 | 220 | 1.64e-53 | 171 |
| MS.gene33955.t1 | AT4G30930 | 46.429 | 112 | 59 | 1 | 92 | 202 | 140 | 251 | 5.76e-22 | 90.9 |
Find 56 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTATGGACGATATAAATT+TGG | 0.192854 | 1.4:-75020586 | MS.gene33955:CDS |
| CATCCGGATAAATAGCATTA+TGG | 0.235579 | 1.4:-75020631 | MS.gene33955:CDS |
| ACAGCAGATTCAGTGGATTT+AGG | 0.249346 | 1.4:+75022537 | None:intergenic |
| TTTATCCGGATGCGTGTATT+TGG | 0.270233 | 1.4:+75020642 | None:intergenic |
| ATATCGTCCATAGTAACTTT+TGG | 0.287859 | 1.4:+75020594 | None:intergenic |
| AAGCACTACCGTAGAACTAT+TGG | 0.389507 | 1.4:-75020942 | MS.gene33955:CDS |
| AAATTGTTCAGTCTCCTTCA+TGG | 0.399185 | 1.4:-75022467 | MS.gene33955:CDS |
| ATCCGGATAAATAGCATTAT+GGG | 0.402240 | 1.4:-75020630 | MS.gene33955:CDS |
| GGCCAGGGTGAACAATATAT+TGG | 0.416675 | 1.4:+75021808 | None:intergenic |
| GGACTACCCAAAAGTTACTA+TGG | 0.431208 | 1.4:-75020601 | MS.gene33955:CDS |
| ACCACAGCATTTGTTACTAC+TGG | 0.436337 | 1.4:+75021123 | None:intergenic |
| GATTCAGTGGATTTAGGAAC+GGG | 0.439429 | 1.4:+75022543 | None:intergenic |
| TACTGGTTTGCCAATGTAGC+AGG | 0.447272 | 1.4:+75021140 | None:intergenic |
| AGCCCATAATGCTATTTATC+CGG | 0.454993 | 1.4:+75020628 | None:intergenic |
| ATTGTAGATCGCCCTGCATA+AGG | 0.455809 | 1.4:-75021187 | MS.gene33955:intron |
| TCAGTCTCCTTCATGGGAGA+AGG | 0.458893 | 1.4:-75022460 | MS.gene33955:CDS |
| TGAACAACAAGCCAGCGGCC+AGG | 0.470564 | 1.4:+75021792 | None:intergenic |
| ACAGATACATCCTGCTACAT+TGG | 0.471048 | 1.4:-75021150 | MS.gene33955:CDS |
| CTTGTTGTTCAGAGGCTCAA+AGG | 0.473982 | 1.4:-75021780 | MS.gene33955:CDS |
| ACTTGAGACTCAGACTCAAC+AGG | 0.480236 | 1.4:+75022510 | None:intergenic |
| AATTGTTCAGTCTCCTTCAT+GGG | 0.484994 | 1.4:-75022466 | MS.gene33955:CDS |
| GAACAACAAGCCAGCGGCCA+GGG | 0.488250 | 1.4:+75021793 | None:intergenic |
| TTGAGGCTTTGTTGAACAAT+GGG | 0.491609 | 1.4:+75022656 | None:intergenic |
| ATATGCGACAGTGGAAGATC+AGG | 0.499742 | 1.4:-75021100 | MS.gene33955:intron |
| CAGTCTCCTTCATGGGAGAA+GGG | 0.511001 | 1.4:-75022459 | MS.gene33955:CDS |
| CAACCAGTAAAACCTTATGC+AGG | 0.515174 | 1.4:+75021175 | None:intergenic |
| GCCGCTGGCTTGTTGTTCAG+AGG | 0.515615 | 1.4:-75021788 | MS.gene33955:CDS |
| TGATGAGAAATAGAGAATTG+AGG | 0.517104 | 1.4:+75022639 | None:intergenic |
| ATATTGTTCACCCTGGCCGC+TGG | 0.519617 | 1.4:-75021803 | MS.gene33955:CDS |
| TGGAAAGAGAGGTTGTGAGA+AGG | 0.523157 | 1.4:+75022597 | None:intergenic |
| AAATAGCATTATGGGCTATG+AGG | 0.523959 | 1.4:-75020622 | MS.gene33955:CDS |
| TTATTGTATTCAAATACAAA+AGG | 0.529558 | 1.4:-75020968 | MS.gene33955:CDS |
| AGGCAAGCGTTGTGAGAAAG+TGG | 0.533199 | 1.4:+75022572 | None:intergenic |
| AAAAGACCCTTCTCCCATGA+AGG | 0.536139 | 1.4:+75022453 | None:intergenic |
| TGTGAAAGAAGAACAGAGAG+TGG | 0.542220 | 1.4:+75022680 | None:intergenic |
| GTCTGTGTCCAATAGTTCTA+CGG | 0.543286 | 1.4:+75020934 | None:intergenic |
| ATTGAGGCTTTGTTGAACAA+TGG | 0.545857 | 1.4:+75022655 | None:intergenic |
| GACAGCCAAATACACGCATC+CGG | 0.549802 | 1.4:-75020647 | MS.gene33955:intron |
| TTGTGAGAAGGAACACGAGA+AGG | 0.551095 | 1.4:+75022609 | None:intergenic |
| TAGAACTATTGGACACAGAC+AGG | 0.559177 | 1.4:-75020931 | MS.gene33955:intron |
| AGATTCAGTGGATTTAGGAA+CGG | 0.565702 | 1.4:+75022542 | None:intergenic |
| AGCGTTGTGAGAAAGTGGAT+TGG | 0.591056 | 1.4:+75022577 | None:intergenic |
| AGGTGCAACAGCAGATTCAG+TGG | 0.593123 | 1.4:+75022530 | None:intergenic |
| CGCCAATATATTGTTCACCC+TGG | 0.594986 | 1.4:-75021810 | MS.gene33955:CDS |
| TGAGTCTGAGTCTCAAGTGT+CGG | 0.608217 | 1.4:-75022505 | MS.gene33955:CDS |
| TGTGAGAAGGAACACGAGAA+GGG | 0.611777 | 1.4:+75022610 | None:intergenic |
| ACCAGTAGTAACAAATGCTG+TGG | 0.613380 | 1.4:-75021124 | MS.gene33955:CDS |
| AGAAAGTGGATTGGAAAGAG+AGG | 0.617691 | 1.4:+75022586 | None:intergenic |
| AACCAGTAAAACCTTATGCA+GGG | 0.620022 | 1.4:+75021176 | None:intergenic |
| GTATACCTTGTCGTTAACGT+TGG | 0.621234 | 1.4:+75021755 | None:intergenic |
| GAAGGAACACGAGAAGGGAA+AGG | 0.624230 | 1.4:+75022615 | None:intergenic |
| AGGAGACTGAACAATTTGAG+AGG | 0.639275 | 1.4:+75022473 | None:intergenic |
| AGGTGCCAACGTTAACGACA+AGG | 0.654570 | 1.4:-75021760 | MS.gene33955:intron |
| GATTTAGGAACGGGTAACAG+AGG | 0.658715 | 1.4:+75022552 | None:intergenic |
| GCCTCTGAACAACAAGCCAG+CGG | 0.664752 | 1.4:+75021787 | None:intergenic |
| TGCTGTGGTATATGCGACAG+TGG | 0.682736 | 1.4:-75021109 | MS.gene33955:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTATAAATATAATATAAA+AGG | - | chr1.4:75021849-75021868 | MS.gene33955:intron | 10.0% |
| !! | CCTATAAATATAATATAAAA+GGG | - | chr1.4:75021850-75021869 | MS.gene33955:intron | 10.0% |
| !!! | AAAAAGTTTTGATAAATAAT+TGG | + | chr1.4:75022408-75022427 | None:intergenic | 10.0% |
| !!! | ATACAATATATTTAAAACTA+TGG | - | chr1.4:75021692-75021711 | MS.gene33955:intron | 10.0% |
| !! | AAAGTATATTATAAGAAACT+AGG | - | chr1.4:75021882-75021901 | MS.gene33955:intron | 15.0% |
| !! | ATATAAAATAGATAAAACCA+TGG | + | chr1.4:75021027-75021046 | None:intergenic | 15.0% |
| !! | TATAATATAAAAGGGTTTAA+TGG | - | chr1.4:75021858-75021877 | MS.gene33955:intron | 15.0% |
| !! | TTATTGTATTCAAATACAAA+AGG | - | chr1.4:75022315-75022334 | MS.gene33955:intron | 15.0% |
| !!! | AATATATTTAAAACTATGGT+TGG | - | chr1.4:75021696-75021715 | MS.gene33955:intron | 15.0% |
| !!! | CCCTTTTATATTATATTTAT+AGG | + | chr1.4:75021853-75021872 | None:intergenic | 15.0% |
| !! | AAAAATATGCAAACTCAATT+GGG | + | chr1.4:75020994-75021013 | None:intergenic | 20.0% |
| !! | AACATTCATAAAAAATGACA+TGG | + | chr1.4:75022574-75022593 | None:intergenic | 20.0% |
| !! | ATGAATGAAATTCAAATCAT+TGG | - | chr1.4:75021943-75021962 | MS.gene33955:intron | 20.0% |
| !! | GCTAATCATTACTTAATAAA+TGG | + | chr1.4:75021666-75021685 | None:intergenic | 20.0% |
| !! | TTGTTTGTAATTGTATTGTT+GGG | - | chr1.4:75021322-75021341 | MS.gene33955:intron | 20.0% |
| !! | TTTGAACAATTCAAACAAAA+GGG | + | chr1.4:75020916-75020935 | None:intergenic | 20.0% |
| !!! | AGGTATTTGTTTATTGTTTT+GGG | - | chr1.4:75021373-75021392 | MS.gene33955:intron | 20.0% |
| !!! | CATTTATCTGAAATTATTTG+TGG | - | chr1.4:75021054-75021073 | MS.gene33955:intron | 20.0% |
| !!! | TAGGTATTTGTTTATTGTTT+TGG | - | chr1.4:75021372-75021391 | MS.gene33955:intron | 20.0% |
| !!! | TGTACATTAATTTTAACTCT+TGG | - | chr1.4:75022072-75022091 | MS.gene33955:intron | 20.0% |
| !!! | TTTTAGCTTTTTTTTCTAAC+AGG | + | chr1.4:75022237-75022256 | None:intergenic | 20.0% |
| !!! | TTTTGAACAATTCAAACAAA+AGG | + | chr1.4:75020917-75020936 | None:intergenic | 20.0% |
| ! | AACAGTAAATGTTCAGATAA+TGG | + | chr1.4:75022027-75022046 | None:intergenic | 25.0% |
| ! | AAGTGGCAAATTATAATCAT+TGG | + | chr1.4:75021977-75021996 | None:intergenic | 25.0% |
| ! | CAAAAATATGCAAACTCAAT+TGG | + | chr1.4:75020995-75021014 | None:intergenic | 25.0% |
| ! | CATTCATCATATATACAACA+TGG | + | chr1.4:75022527-75022546 | None:intergenic | 25.0% |
| ! | GAAATAATGAGTTTAACGAA+TGG | + | chr1.4:75021577-75021596 | None:intergenic | 25.0% |
| ! | GATAGACTTTACTTATGTTT+CGG | + | chr1.4:75021174-75021193 | None:intergenic | 25.0% |
| ! | GCATTAAAACAAAATGGTTA+AGG | + | chr1.4:75022277-75022296 | None:intergenic | 25.0% |
| ! | GTTGTTTGTAATTGTATTGT+TGG | - | chr1.4:75021321-75021340 | MS.gene33955:intron | 25.0% |
| ! | TAAAACAAAATGGTTAAGGT+AGG | + | chr1.4:75022273-75022292 | None:intergenic | 25.0% |
| ! | TACTATGGACGATATAAATT+TGG | - | chr1.4:75022697-75022716 | MS.gene33955:CDS | 25.0% |
| ! | TAGGAATGGTTAAGTAAAAT+GGG | - | chr1.4:75021100-75021119 | MS.gene33955:intron | 25.0% |
| ! | TCAAATCAAACATCAAATTC+TGG | + | chr1.4:75022604-75022623 | None:intergenic | 25.0% |
| ! | TGTTAATCTAGATTGTTCTA+TGG | - | chr1.4:75020958-75020977 | MS.gene33955:CDS | 25.0% |
| ! | TTAGGAATGGTTAAGTAAAA+TGG | - | chr1.4:75021099-75021118 | MS.gene33955:intron | 25.0% |
| !! | ATAAATGGTAGCAATTTTAG+AGG | + | chr1.4:75021651-75021670 | None:intergenic | 25.0% |
| !! | ATATAGGTTGAAACAATCAT+TGG | + | chr1.4:75021196-75021215 | None:intergenic | 25.0% |
| !! | CAATTGAGTTTGCATATTTT+TGG | - | chr1.4:75020993-75021012 | MS.gene33955:intron | 25.0% |
| !! | CTATCATGATGTCAATTTTA+CGG | + | chr1.4:75021762-75021781 | None:intergenic | 25.0% |
| !!! | AACCATTTTGTTTTAATGCA+GGG | - | chr1.4:75022278-75022297 | MS.gene33955:intron | 25.0% |
| !!! | CAACCTATATTTTTGAACTT+GGG | - | chr1.4:75021206-75021225 | MS.gene33955:intron | 25.0% |
| !!! | CTTTTTTTTAATGTTGAGTG+TGG | - | chr1.4:75020881-75020900 | MS.gene33955:intron | 25.0% |
| !!! | GGTATTTGTTTATTGTTTTG+GGG | - | chr1.4:75021374-75021393 | MS.gene33955:intron | 25.0% |
| !!! | TAACCATTTTGTTTTAATGC+AGG | - | chr1.4:75022277-75022296 | MS.gene33955:intron | 25.0% |
| !!! | TCAACCTATATTTTTGAACT+TGG | - | chr1.4:75021205-75021224 | MS.gene33955:intron | 25.0% |
| !!! | TTGTGTTGTTTTGTTTAGAT+TGG | - | chr1.4:75021446-75021465 | MS.gene33955:intron | 25.0% |
| AACCCTGCATTAAAACAAAA+TGG | + | chr1.4:75022283-75022302 | None:intergenic | 30.0% | |
| AATCGTTTCAAAGAGAAAAG+TGG | + | chr1.4:75021994-75022013 | None:intergenic | 30.0% | |
| AGTATTGCACATTCAAGATT+AGG | - | chr1.4:75021081-75021100 | MS.gene33955:intron | 30.0% | |
| ATCCGGATAAATAGCATTAT+GGG | - | chr1.4:75022653-75022672 | MS.gene33955:CDS | 30.0% | |
| ATTGGATTGCACAAAGTAAA+AGG | + | chr1.4:75022390-75022409 | None:intergenic | 30.0% | |
| CATTCATTTCTCACATCATA+TGG | + | chr1.4:75021926-75021945 | None:intergenic | 30.0% | |
| GAACCCAAGTTCAAAAATAT+AGG | + | chr1.4:75021212-75021231 | None:intergenic | 30.0% | |
| TATGGTCAAAATACCTCTTT+AGG | + | chr1.4:75021908-75021927 | None:intergenic | 30.0% | |
| TCAATTATAGACGAATCACT+CGG | + | chr1.4:75021237-75021256 | None:intergenic | 30.0% | |
| TGAAAGGAGCTTAGAAATAT+GGG | - | chr1.4:75022498-75022517 | MS.gene33955:CDS | 30.0% | |
| TGATGAGAAATAGAGAATTG+AGG | + | chr1.4:75020647-75020666 | None:intergenic | 30.0% | |
| TTTAATGTTGAGTGTGGATT+GGG | - | chr1.4:75020887-75020906 | MS.gene33955:intron | 30.0% | |
| ! | ATATCGTCCATAGTAACTTT+TGG | + | chr1.4:75022692-75022711 | None:intergenic | 30.0% |
| ! | TATCGTCCATAGTAACTTTT+GGG | + | chr1.4:75022691-75022710 | None:intergenic | 30.0% |
| ! | TTTTAATGTTGAGTGTGGAT+TGG | - | chr1.4:75020886-75020905 | MS.gene33955:intron | 30.0% |
| !! | TTGTAATGGTGAGTTTTTAG+TGG | - | chr1.4:75020858-75020877 | MS.gene33955:intron | 30.0% |
| !! | TTTAAAACTATGGTTGGCTT+AGG | - | chr1.4:75021702-75021721 | MS.gene33955:intron | 30.0% |
| !!! | TGTTGTTTTGTTTAGATTGG+TGG | - | chr1.4:75021449-75021468 | MS.gene33955:intron | 30.0% |
| AAATTGTTCAGTCTCCTTCA+TGG | - | chr1.4:75020816-75020835 | MS.gene33955:intron | 35.0% | |
| AACCAGTAAAACCTTATGCA+GGG | + | chr1.4:75022110-75022129 | None:intergenic | 35.0% | |
| AATTGTTCAGTCTCCTTCAT+GGG | - | chr1.4:75020817-75020836 | MS.gene33955:intron | 35.0% | |
| ACTACTAATGACCTGAACTA+TGG | - | chr1.4:75021820-75021839 | MS.gene33955:CDS | 35.0% | |
| ATAAGAAACTAGGCCTAAAG+AGG | - | chr1.4:75021892-75021911 | MS.gene33955:intron | 35.0% | |
| CAATCACGTAGCTAGTAAAA+GGG | - | chr1.4:75021277-75021296 | MS.gene33955:intron | 35.0% | |
| CAATTATAGACGAATCACTC+GGG | + | chr1.4:75021236-75021255 | None:intergenic | 35.0% | |
| CATCCGGATAAATAGCATTA+TGG | - | chr1.4:75022652-75022671 | MS.gene33955:CDS | 35.0% | |
| CTACTAATGACCTGAACTAT+GGG | - | chr1.4:75021821-75021840 | MS.gene33955:CDS | 35.0% | |
| CTGAAAGGAGCTTAGAAATA+TGG | - | chr1.4:75022497-75022516 | MS.gene33955:CDS | 35.0% | |
| TATGATGAATGTTTGCCTGT+AGG | - | chr1.4:75022536-75022555 | MS.gene33955:CDS | 35.0% | |
| TCAATCACGTAGCTAGTAAA+AGG | - | chr1.4:75021276-75021295 | MS.gene33955:intron | 35.0% | |
| TGCACATTCAAGATTAGGAA+TGG | - | chr1.4:75021086-75021105 | MS.gene33955:intron | 35.0% | |
| TGCTTAAGGAGCAAAGAAAA+TGG | + | chr1.4:75021625-75021644 | None:intergenic | 35.0% | |
| TTACCCTTAGACTTTCTGAA+AGG | - | chr1.4:75022482-75022501 | MS.gene33955:CDS | 35.0% | |
| ! | AAATAGCATTATGGGCTATG+AGG | - | chr1.4:75022661-75022680 | MS.gene33955:CDS | 35.0% |
| ! | AGATTCAGTGGATTTAGGAA+CGG | + | chr1.4:75020744-75020763 | None:intergenic | 35.0% |
| ! | AGCCCATAATGCTATTTATC+CGG | + | chr1.4:75022658-75022677 | None:intergenic | 35.0% |
| ! | CAAAAGTTACATGCTTTGAG+TGG | - | chr1.4:75020932-75020951 | MS.gene33955:CDS | 35.0% |
| !! | AATTTTAGAGGCAGTGCTTA+AGG | + | chr1.4:75021639-75021658 | None:intergenic | 35.0% |
| !! | AGCTAGTAAAAGGGTTAGTT+TGG | - | chr1.4:75021286-75021305 | MS.gene33955:intron | 35.0% |
| !! | AGTAAAAGGGTTAGTTTGGA+TGG | - | chr1.4:75021290-75021309 | MS.gene33955:intron | 35.0% |
| !! | AGTTTGTTGGGTTGGTAAAT+AGG | - | chr1.4:75021353-75021372 | MS.gene33955:intron | 35.0% |
| !! | ATTGAGGCTTTGTTGAACAA+TGG | + | chr1.4:75020631-75020650 | None:intergenic | 35.0% |
| !! | TTGAGGCTTTGTTGAACAAT+GGG | + | chr1.4:75020630-75020649 | None:intergenic | 35.0% |
| !!! | TATTTTTGGCTCTATCACCA+TGG | - | chr1.4:75021007-75021026 | MS.gene33955:intron | 35.0% |
| AAGCACTACCGTAGAACTAT+TGG | - | chr1.4:75022341-75022360 | MS.gene33955:intron | 40.0% | |
| ACAGATACATCCTGCTACAT+TGG | - | chr1.4:75022133-75022152 | MS.gene33955:intron | 40.0% | |
| ACCAGTAGTAACAAATGCTG+TGG | - | chr1.4:75022159-75022178 | MS.gene33955:intron | 40.0% | |
| AGCTCCTTTCAGAAAGTCTA+AGG | + | chr1.4:75022489-75022508 | None:intergenic | 40.0% | |
| AGGAGACTGAACAATTTGAG+AGG | + | chr1.4:75020813-75020832 | None:intergenic | 40.0% | |
| CAACCAGTAAAACCTTATGC+AGG | + | chr1.4:75022111-75022130 | None:intergenic | 40.0% | |
| GAAATGTCTATGTGTGGCTT+GGG | - | chr1.4:75022434-75022453 | MS.gene33955:intron | 40.0% | |
| GCGATTGAAATGTCTATGTG+TGG | - | chr1.4:75022428-75022447 | MS.gene33955:intron | 40.0% | |
| GCTCCTTTCAGAAAGTCTAA+GGG | + | chr1.4:75022488-75022507 | None:intergenic | 40.0% | |
| GCTTGGGAACTAATTCTTTG+GGG | - | chr1.4:75022450-75022469 | MS.gene33955:CDS | 40.0% | |
| GGACTACCCAAAAGTTACTA+TGG | - | chr1.4:75022682-75022701 | MS.gene33955:CDS | 40.0% | |
| GGCTTGGGAACTAATTCTTT+GGG | - | chr1.4:75022449-75022468 | MS.gene33955:CDS | 40.0% | |
| GTATACCTTGTCGTTAACGT+TGG | + | chr1.4:75021531-75021550 | None:intergenic | 40.0% | |
| TAGAACTATTGGACACAGAC+AGG | - | chr1.4:75022352-75022371 | MS.gene33955:intron | 40.0% | |
| TAGGTCTTAACCCATAGTTC+AGG | + | chr1.4:75021834-75021853 | None:intergenic | 40.0% | |
| TGAAATGTCTATGTGTGGCT+TGG | - | chr1.4:75022433-75022452 | MS.gene33955:intron | 40.0% | |
| TGTGAAAGAAGAACAGAGAG+TGG | + | chr1.4:75020606-75020625 | None:intergenic | 40.0% | |
| TTTATCCGGATGCGTGTATT+TGG | + | chr1.4:75022644-75022663 | None:intergenic | 40.0% | |
| ! | ACAGCAGATTCAGTGGATTT+AGG | + | chr1.4:75020749-75020768 | None:intergenic | 40.0% |
| ! | ACCACAGCATTTGTTACTAC+TGG | + | chr1.4:75022163-75022182 | None:intergenic | 40.0% |
| ! | CAATTTTACGGAACCAGAGA+GGG | + | chr1.4:75021750-75021769 | None:intergenic | 40.0% |
| ! | CTGCATAAGGTTTTACTGGT+TGG | - | chr1.4:75022109-75022128 | MS.gene33955:intron | 40.0% |
| ! | GATTCAGTGGATTTAGGAAC+GGG | + | chr1.4:75020743-75020762 | None:intergenic | 40.0% |
| ! | GTCTGTGTCCAATAGTTCTA+CGG | + | chr1.4:75022352-75022371 | None:intergenic | 40.0% |
| ! | TCAATTTTACGGAACCAGAG+AGG | + | chr1.4:75021751-75021770 | None:intergenic | 40.0% |
| ! | TGGCTTGGGAACTAATTCTT+TGG | - | chr1.4:75022448-75022467 | MS.gene33955:CDS | 40.0% |
| !! | AGAAAGTGGATTGGAAAGAG+AGG | + | chr1.4:75020700-75020719 | None:intergenic | 40.0% |
| !!! | GGGTCTTTTTGCTGTTGTAA+TGG | - | chr1.4:75020844-75020863 | MS.gene33955:intron | 40.0% |
| AAAAGACCCTTCTCCCATGA+AGG | + | chr1.4:75020833-75020852 | None:intergenic | 45.0% | |
| ACTTGAGACTCAGACTCAAC+AGG | + | chr1.4:75020776-75020795 | None:intergenic | 45.0% | |
| AGCGTTGTGAGAAAGTGGAT+TGG | + | chr1.4:75020709-75020728 | None:intergenic | 45.0% | |
| ATATGCGACAGTGGAAGATC+AGG | - | chr1.4:75022183-75022202 | MS.gene33955:intron | 45.0% | |
| ATTGTAGATCGCCCTGCATA+AGG | - | chr1.4:75022096-75022115 | MS.gene33955:intron | 45.0% | |
| CGCCAATATATTGTTCACCC+TGG | - | chr1.4:75021473-75021492 | MS.gene33955:intron | 45.0% | |
| GATTTAGGAACGGGTAACAG+AGG | + | chr1.4:75020734-75020753 | None:intergenic | 45.0% | |
| GCTACGTGATTGAGCTTAAG+TGG | + | chr1.4:75021269-75021288 | None:intergenic | 45.0% | |
| GGCCAGGGTGAACAATATAT+TGG | + | chr1.4:75021478-75021497 | None:intergenic | 45.0% | |
| TATGTTTCGGCCAAACTCCA+GGG | + | chr1.4:75021161-75021180 | None:intergenic | 45.0% | |
| TGAGTCTGAGTCTCAAGTGT+CGG | - | chr1.4:75020778-75020797 | MS.gene33955:intron | 45.0% | |
| TGGAAAGAGAGGTTGTGAGA+AGG | + | chr1.4:75020689-75020708 | None:intergenic | 45.0% | |
| TGTGAGAAGGAACACGAGAA+GGG | + | chr1.4:75020676-75020695 | None:intergenic | 45.0% | |
| TTATGTTTCGGCCAAACTCC+AGG | + | chr1.4:75021162-75021181 | None:intergenic | 45.0% | |
| TTGTGAGAAGGAACACGAGA+AGG | + | chr1.4:75020677-75020696 | None:intergenic | 45.0% | |
| ! | TGGGCTACTTCGAGTTTGTT+GGG | - | chr1.4:75021341-75021360 | MS.gene33955:intron | 45.0% |
| ! | TTGGGCTACTTCGAGTTTGT+TGG | - | chr1.4:75021340-75021359 | MS.gene33955:intron | 45.0% |
| !! | CTACTTCGAGTTTGTTGGGT+TGG | - | chr1.4:75021345-75021364 | MS.gene33955:intron | 45.0% |
| !! | CTTGTTGTTCAGAGGCTCAA+AGG | - | chr1.4:75021503-75021522 | MS.gene33955:intron | 45.0% |
| !! | TACTGGTTTGCCAATGTAGC+AGG | + | chr1.4:75022146-75022165 | None:intergenic | 45.0% |
| AGGTGCAACAGCAGATTCAG+TGG | + | chr1.4:75020756-75020775 | None:intergenic | 50.0% | |
| AGGTGCCAACGTTAACGACA+AGG | - | chr1.4:75021523-75021542 | MS.gene33955:intron | 50.0% | |
| CAGTCTCCTTCATGGGAGAA+GGG | - | chr1.4:75020824-75020843 | MS.gene33955:intron | 50.0% | |
| GAAGGAACACGAGAAGGGAA+AGG | + | chr1.4:75020671-75020690 | None:intergenic | 50.0% | |
| GACAGCCAAATACACGCATC+CGG | - | chr1.4:75022636-75022655 | MS.gene33955:CDS | 50.0% | |
| TCAGTCTCCTTCATGGGAGA+AGG | - | chr1.4:75020823-75020842 | MS.gene33955:intron | 50.0% | |
| TGCTGTGGTATATGCGACAG+TGG | - | chr1.4:75022174-75022193 | MS.gene33955:intron | 50.0% | |
| TGTTTGCCTGTAGGCACATG+AGG | - | chr1.4:75022545-75022564 | MS.gene33955:CDS | 50.0% | |
| ! | AGGCAAGCGTTGTGAGAAAG+TGG | + | chr1.4:75020714-75020733 | None:intergenic | 50.0% |
| ! | CGCCCTGCATAAGGTTTTAC+TGG | - | chr1.4:75022105-75022124 | MS.gene33955:intron | 50.0% |
| ATATTGTTCACCCTGGCCGC+TGG | - | chr1.4:75021480-75021499 | MS.gene33955:intron | 55.0% | |
| GCCTCTGAACAACAAGCCAG+CGG | + | chr1.4:75021499-75021518 | None:intergenic | 55.0% | |
| TGGAAGCCTCATGTGCCTAC+AGG | + | chr1.4:75022554-75022573 | None:intergenic | 55.0% | |
| TTGTCTTATCCCTCCGACCC+TGG | - | chr1.4:75021141-75021160 | MS.gene33955:CDS | 55.0% | |
| TTTCGGCCAAACTCCAGGGT+CGG | + | chr1.4:75021157-75021176 | None:intergenic | 55.0% | |
| AGTGCTTCCTGCTCCCTCTC+TGG | - | chr1.4:75021734-75021753 | MS.gene33955:intron | 60.0% | |
| ATCCCTCCGACCCTGGAGTT+TGG | - | chr1.4:75021148-75021167 | MS.gene33955:CDS | 60.0% | |
| GAACAACAAGCCAGCGGCCA+GGG | + | chr1.4:75021493-75021512 | None:intergenic | 60.0% | |
| TACGGAACCAGAGAGGGAGC+AGG | + | chr1.4:75021744-75021763 | None:intergenic | 60.0% | |
| TGAACAACAAGCCAGCGGCC+AGG | + | chr1.4:75021494-75021513 | None:intergenic | 60.0% | |
| !! | GCCGCTGGCTTGTTGTTCAG+AGG | - | chr1.4:75021495-75021514 | MS.gene33955:intron | 60.0% |
| GGCCAAACTCCAGGGTCGGA+GGG | + | chr1.4:75021153-75021172 | None:intergenic | 65.0% | |
| CGGCCAAACTCCAGGGTCGG+AGG | + | chr1.4:75021154-75021173 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 75020575 | 75022730 | 75020575 | ID=MS.gene33955 |
| chr1.4 | mRNA | 75020575 | 75022730 | 75020575 | ID=MS.gene33955.t1;Parent=MS.gene33955 |
| chr1.4 | exon | 75022440 | 75022730 | 75022440 | ID=MS.gene33955.t1.exon1;Parent=MS.gene33955.t1 |
| chr1.4 | CDS | 75022440 | 75022730 | 75022440 | ID=cds.MS.gene33955.t1;Parent=MS.gene33955.t1 |
| chr1.4 | exon | 75021761 | 75021841 | 75021761 | ID=MS.gene33955.t1.exon2;Parent=MS.gene33955.t1 |
| chr1.4 | CDS | 75021761 | 75021841 | 75021761 | ID=cds.MS.gene33955.t1;Parent=MS.gene33955.t1 |
| chr1.4 | exon | 75021101 | 75021202 | 75021101 | ID=MS.gene33955.t1.exon3;Parent=MS.gene33955.t1 |
| chr1.4 | CDS | 75021101 | 75021202 | 75021101 | ID=cds.MS.gene33955.t1;Parent=MS.gene33955.t1 |
| chr1.4 | exon | 75020932 | 75021006 | 75020932 | ID=MS.gene33955.t1.exon4;Parent=MS.gene33955.t1 |
| chr1.4 | CDS | 75020932 | 75021006 | 75020932 | ID=cds.MS.gene33955.t1;Parent=MS.gene33955.t1 |
| chr1.4 | exon | 75020575 | 75020664 | 75020575 | ID=MS.gene33955.t1.exon5;Parent=MS.gene33955.t1 |
| chr1.4 | CDS | 75020575 | 75020664 | 75020575 | ID=cds.MS.gene33955.t1;Parent=MS.gene33955.t1 |
| Gene Sequence |
| Protein sequence |
