AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055212


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055212.t1 MTR_7g063260 95.865 266 11 0 1 266 1 266 0.0 536
MS.gene055212.t1 MTR_7g063270 90.977 266 23 1 1 266 1 265 0.0 502
MS.gene055212.t1 MTR_7g063390 77.736 265 59 0 1 265 1 265 2.59e-154 431
MS.gene055212.t1 MTR_7g063360 76.226 265 63 0 1 265 1 265 4.12e-148 415
MS.gene055212.t1 MTR_7g063330 69.925 266 78 2 1 266 1 264 7.78e-140 394
MS.gene055212.t1 MTR_7g063320 72.348 264 72 1 1 264 1 263 1.00e-138 391
MS.gene055212.t1 MTR_7g063270 73.308 266 21 2 1 266 1 216 2.27e-135 380
MS.gene055212.t1 MTR_3g068070 59.696 263 102 1 3 265 2 260 1.21e-108 315
MS.gene055212.t1 MTR_4g064883 58.915 258 96 2 11 265 9 259 3.60e-108 314
MS.gene055212.t1 MTR_3g068155 56.757 259 108 1 7 265 10 264 2.52e-102 299
MS.gene055212.t1 MTR_4g064887 54.340 265 116 2 1 265 1 260 2.32e-101 296
MS.gene055212.t1 MTR_3g068085 58.000 250 101 1 16 265 15 260 1.98e-100 294
MS.gene055212.t1 MTR_3g068065 59.363 251 98 1 16 266 17 263 3.24e-100 294
MS.gene055212.t1 MTR_3g068175 54.545 264 116 1 2 265 3 262 1.80e-98 289
MS.gene055212.t1 MTR_3g068175 53.731 268 116 2 2 265 3 266 2.89e-96 284
MS.gene055212.t1 MTR_4g064883 60.784 204 80 0 11 214 9 212 1.08e-88 262
MS.gene055212.t1 MTR_4g064887 54.717 212 95 1 1 212 1 211 1.42e-81 244
MS.gene055212.t1 MTR_4g132850 33.984 256 158 7 12 266 5 250 3.94e-31 116
MS.gene055212.t1 MTR_4g131740 33.074 257 156 6 16 263 40 289 1.31e-28 110
MS.gene055212.t1 MTR_7g094510 31.641 256 161 6 16 264 6 254 2.32e-27 106
MS.gene055212.t1 MTR_7g113650 31.518 257 159 8 16 263 40 288 1.37e-24 100
MS.gene055212.t1 MTR_7g094520 31.801 261 154 8 16 264 11 259 1.67e-24 99.0
MS.gene055212.t1 MTR_1g082760 29.961 257 163 8 16 263 40 288 5.55e-23 95.5
MS.gene055212.t1 MTR_8g442750 28.897 263 160 6 16 263 14 264 5.87e-23 95.9
MS.gene055212.t1 MTR_1g068955 31.008 258 157 6 16 262 14 261 2.06e-22 94.0
MS.gene055212.t1 MTR_3g085740 29.435 248 158 6 22 263 81 317 1.17e-20 89.7
MS.gene055212.t1 MTR_4g058810 27.132 258 175 7 16 265 11 263 9.92e-20 86.3
MS.gene055212.t1 MTR_7g080410 28.780 205 142 4 4 204 26 230 1.30e-19 86.7
MS.gene055212.t1 MTR_7g080410 28.780 205 142 4 4 204 26 230 1.45e-19 86.7
MS.gene055212.t1 MTR_4g058840 27.237 257 176 6 16 265 11 263 1.79e-19 85.9
MS.gene055212.t1 MTR_4g058820 27.237 257 176 6 16 265 11 263 1.79e-19 85.9
MS.gene055212.t1 MTR_4g052350 29.670 273 169 10 1 265 1 258 3.61e-17 79.3
MS.gene055212.t1 MTR_7g071680 29.474 285 173 9 3 266 18 295 8.65e-17 78.6
MS.gene055212.t1 MTR_6g023910 28.253 269 180 8 1 264 1 261 1.74e-16 77.4
MS.gene055212.t1 MTR_1196s0010 28.854 253 153 7 21 264 279 513 5.31e-16 77.8
MS.gene055212.t1 MTR_4g052320 29.134 254 168 6 16 265 8 253 1.14e-15 75.1
MS.gene055212.t1 MTR_6g023610 27.675 271 179 9 1 264 1 261 1.61e-15 74.7
MS.gene055212.t1 MTR_6g023990 27.899 276 173 10 1 264 1 262 4.85e-15 73.2
MS.gene055212.t1 MTR_4g052340 28.287 251 167 7 16 262 14 255 1.07e-14 72.4
MS.gene055212.t1 MTR_8g044240 27.723 202 136 5 16 208 69 269 1.25e-14 73.2
MS.gene055212.t1 MTR_4g052300 27.953 254 170 6 16 265 8 252 1.76e-14 71.6
MS.gene055212.t1 MTR_7g083870 27.740 292 172 11 3 266 8 288 1.49e-13 69.7
MS.gene055212.t1 MTR_4g058830 29.747 158 101 5 113 265 57 209 1.94e-13 68.2
MS.gene055212.t1 MTR_3g020670 30.268 261 165 6 16 265 16 270 5.00e-13 67.8
MS.gene055212.t1 MTR_7g107670 28.185 259 172 6 16 266 33 285 5.14e-13 68.2
MS.gene055212.t1 MTR_7g105590 28.571 189 128 5 16 201 8 192 7.00e-13 66.2
MS.gene055212.t1 MTR_7g110160 29.457 258 152 8 13 265 3 235 1.03e-12 66.6
MS.gene055212.t1 MTR_4g078630 27.170 265 168 6 16 266 19 272 1.43e-12 66.6
MS.gene055212.t1 MTR_7g105580 25.490 255 162 8 16 266 8 238 2.54e-12 65.5
MS.gene055212.t1 MTR_1g051165 23.106 264 183 8 16 265 14 271 1.42e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055212.t1 AT5G06060 58.039 255 103 1 11 265 4 254 3.07e-106 309
MS.gene055212.t1 AT1G07440 58.203 256 102 3 10 265 6 256 1.28e-103 302
MS.gene055212.t1 AT2G29260 56.420 257 102 2 12 265 64 313 4.06e-101 298
MS.gene055212.t1 AT2G29290 56.078 255 108 1 11 265 2 252 6.39e-101 295
MS.gene055212.t1 AT2G29320 58.621 261 94 5 11 265 7 259 2.66e-100 294
MS.gene055212.t1 AT2G29300 57.692 260 97 4 11 265 2 253 4.68e-99 290
MS.gene055212.t1 AT2G29300 57.692 260 97 4 11 265 2 253 2.03e-98 290
MS.gene055212.t1 AT2G29340 56.471 255 107 2 11 265 2 252 8.09e-98 287
MS.gene055212.t1 AT2G29350 56.641 256 106 2 10 265 9 259 1.06e-97 287
MS.gene055212.t1 AT2G29340 56.471 255 107 2 11 265 2 252 2.03e-97 288
MS.gene055212.t1 AT2G29310 56.078 255 108 2 11 265 2 252 2.52e-97 286
MS.gene055212.t1 AT2G29150 56.654 263 109 3 1 263 1 258 5.43e-97 285
MS.gene055212.t1 AT2G29360 54.511 266 115 4 1 265 1 261 6.69e-97 285
MS.gene055212.t1 AT2G30670 54.688 256 110 2 11 265 2 252 6.59e-96 282
MS.gene055212.t1 AT2G29330 54.902 255 111 2 11 265 2 252 3.27e-95 281
MS.gene055212.t1 AT1G07450 54.331 254 111 2 12 265 4 252 6.30e-95 280
MS.gene055212.t1 AT2G29370 54.406 261 110 4 8 265 7 261 6.13e-93 275
MS.gene055212.t1 AT2G29320 56.904 239 90 4 32 265 11 241 4.43e-88 262
MS.gene055212.t1 AT2G29290 53.648 233 104 1 33 265 7 235 3.51e-86 257
MS.gene055212.t1 AT2G29310 53.846 234 104 2 32 265 21 250 4.58e-83 249
MS.gene055212.t1 AT2G29350 54.667 225 97 2 41 265 2 221 1.48e-80 242
MS.gene055212.t1 AT2G29320 60.488 205 71 4 11 209 7 207 2.13e-79 238
MS.gene055212.t1 AT2G29340 56.716 201 87 0 11 211 2 202 8.69e-78 234
MS.gene055212.t1 AT2G29340 56.716 201 87 0 11 211 2 202 8.69e-78 234
MS.gene055212.t1 AT2G29310 57.000 200 86 0 11 210 2 201 4.27e-77 233
MS.gene055212.t1 AT2G29350 57.000 200 86 0 10 209 9 208 8.14e-77 233
MS.gene055212.t1 AT1G07440 55.621 169 75 0 10 178 6 174 4.31e-64 198
MS.gene055212.t1 AT2G29310 54.190 179 82 0 32 210 21 199 1.52e-62 195
MS.gene055212.t1 AT2G29170 63.542 96 34 1 8 102 7 102 9.33e-40 134
MS.gene055212.t1 AT3G03980 32.593 270 165 4 7 264 5 269 3.30e-34 125
MS.gene055212.t1 AT5G18210 32.558 258 161 4 15 264 7 259 3.22e-31 117
MS.gene055212.t1 AT4G05530 33.730 252 158 6 16 266 9 252 3.46e-31 116
MS.gene055212.t1 AT3G05260 35.156 256 150 8 16 263 37 284 4.89e-30 114
MS.gene055212.t1 AT1G54870 34.241 257 152 8 16 263 82 330 1.03e-29 114
MS.gene055212.t1 AT1G54870 34.241 257 152 8 16 263 84 332 1.12e-29 114
MS.gene055212.t1 AT5G18210 32.636 239 148 4 15 245 7 240 1.24e-27 107
MS.gene055212.t1 AT4G13180 32.422 256 159 5 16 264 13 261 9.66e-27 105
MS.gene055212.t1 AT3G04000 32.963 270 163 4 7 263 5 269 4.57e-25 100
MS.gene055212.t1 AT1G24360 33.065 248 149 9 22 263 80 316 4.64e-24 99.0
MS.gene055212.t1 AT3G12800 27.099 262 167 5 16 263 10 261 2.84e-23 96.7
MS.gene055212.t1 AT3G03330 29.949 197 133 3 12 203 37 233 3.78e-19 85.9
MS.gene055212.t1 AT3G55310 26.154 260 175 8 16 265 17 269 3.44e-18 82.4
MS.gene055212.t1 AT3G46170 27.027 259 174 9 16 265 26 278 3.47e-18 82.4
MS.gene055212.t1 AT3G55290 26.616 263 170 9 16 265 17 269 3.65e-18 82.4
MS.gene055212.t1 AT3G55290 26.616 263 170 9 16 265 18 270 3.89e-18 82.0
MS.gene055212.t1 AT1G63380 26.255 259 177 9 16 265 19 272 5.95e-18 81.6
MS.gene055212.t1 AT1G63380 26.255 259 177 9 16 265 15 268 6.24e-18 81.6
MS.gene055212.t1 AT1G63380 26.255 259 177 9 16 265 17 270 6.54e-18 81.6
MS.gene055212.t1 AT1G63380 26.255 259 177 9 16 265 22 275 7.79e-18 81.6
MS.gene055212.t1 AT1G62610 24.324 259 182 7 16 265 15 268 2.44e-16 77.0
MS.gene055212.t1 AT1G62610 24.324 259 182 7 16 265 14 267 2.94e-16 77.0
MS.gene055212.t1 AT1G62610 24.324 259 182 7 16 265 13 266 3.02e-16 77.0
MS.gene055212.t1 AT1G62610 24.324 259 182 7 16 265 19 272 3.16e-16 77.0
MS.gene055212.t1 AT2G17845 23.552 259 182 7 16 263 47 300 1.00e-15 75.9
MS.gene055212.t1 AT3G42960 28.676 272 164 10 11 266 5 262 1.77e-15 74.7
MS.gene055212.t1 AT3G51680 28.014 282 182 8 1 266 20 296 2.59e-15 74.7
MS.gene055212.t1 AT5G04900 28.205 195 131 5 22 208 83 276 4.02e-15 74.7
MS.gene055212.t1 AT3G47350 30.052 193 124 6 18 205 46 232 8.18e-15 73.2
MS.gene055212.t1 AT3G47350 30.052 193 124 6 18 205 46 232 8.34e-15 73.6
MS.gene055212.t1 AT5G50690 29.469 207 130 7 16 212 45 245 3.42e-14 70.9
MS.gene055212.t1 AT5G50590 29.469 207 130 7 16 212 45 245 3.42e-14 70.9
MS.gene055212.t1 AT3G26760 26.236 263 173 7 16 265 36 290 4.52e-14 71.2
MS.gene055212.t1 AT5G50690 30.814 172 115 4 16 185 45 214 5.82e-14 70.9
MS.gene055212.t1 AT5G50590 30.814 172 115 4 16 185 45 214 5.82e-14 70.9
MS.gene055212.t1 AT1G67730 29.817 218 136 6 17 221 50 263 8.94e-14 70.5
MS.gene055212.t1 AT1G49670 30.317 221 136 9 18 225 6 221 1.45e-13 70.5
MS.gene055212.t1 AT1G49670 30.493 223 133 10 18 225 6 221 1.57e-13 70.5
MS.gene055212.t1 AT3G47360 30.366 191 122 6 20 205 49 233 2.49e-13 68.9
MS.gene055212.t1 AT3G03350 30.058 173 108 4 36 203 188 352 6.08e-13 68.2
MS.gene055212.t1 AT4G03140 26.923 260 174 7 16 266 78 330 2.62e-12 66.2
MS.gene055212.t1 AT2G47130 27.799 259 166 9 16 265 6 252 3.15e-12 65.5
MS.gene055212.t1 AT3G06060 24.664 223 153 6 21 239 42 253 4.17e-12 65.5
MS.gene055212.t1 AT4G13250 25.604 207 133 4 22 208 165 370 4.33e-12 66.2
MS.gene055212.t1 AT3G06060 24.664 223 153 6 21 239 59 270 5.07e-12 65.5
MS.gene055212.t1 AT2G47140 26.718 262 166 8 16 265 6 253 3.06e-11 62.4
MS.gene055212.t1 AT3G59710 34.307 137 81 4 13 145 13 144 7.73e-11 61.6

Find 54 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAGAGTTAGCTGAATT+TGG 0.164853 7.4:-40833317 MS.gene055212:CDS
CCATTCTAATGCCAAGTTCT+TGG 0.242739 7.4:+40832676 None:intergenic
GTGTTTACTTCTTCCGTTGC+AGG 0.266264 7.4:-40832861 MS.gene055212:CDS
CTTCTAAAGGAATCTGGATA+TGG 0.270015 7.4:-40832891 MS.gene055212:CDS
TGAACAACGCAAGAGATTAA+TGG 0.291743 7.4:-40833183 MS.gene055212:CDS
AGCAAGGGGTTTAATGTAAC+AGG 0.349868 7.4:-40833230 MS.gene055212:CDS
TCCAATAGTGATGTCTTAAC+AGG 0.371652 7.4:+40832614 None:intergenic
ACCTGTTAAGACATCACTAT+TGG 0.380036 7.4:-40832615 MS.gene055212:CDS
ACTGTTTCTTCTATCTTTCA+AGG 0.382915 7.4:-40833158 MS.gene055212:CDS
CACCCACTTCTAAAGGAATC+TGG 0.397044 7.4:-40832897 MS.gene055212:CDS
AGATGATATTAATAAATGTT+TGG 0.410712 7.4:-40833264 MS.gene055212:CDS
TTAATAAATGTTTGGAAGAG+TGG 0.412448 7.4:-40833256 MS.gene055212:CDS
AACAAAGTTAAGCAGCTTCA+AGG 0.417397 7.4:-40833643 MS.gene055212:CDS
CCAAGAACTTGGCATTAGAA+TGG 0.430035 7.4:-40832676 MS.gene055212:CDS
GAAGATATAAATACTACAAT+TGG 0.437311 7.4:-40832960 MS.gene055212:CDS
GGACAAGTTATAGCTATTGA+TGG 0.448377 7.4:-40831989 MS.gene055212:CDS
CGTGCAAATGCTGTGGCACC+TGG 0.452656 7.4:-40832638 MS.gene055212:CDS
ACAGGTGGAACCCGAGGCAT+TGG 0.454943 7.4:-40833582 MS.gene055212:CDS
GAATCAATTCACCAAGAACT+TGG 0.462001 7.4:-40832687 MS.gene055212:CDS
AGGAGGAAACATACCTTTAG+TGG 0.472951 7.4:+40832803 None:intergenic
TCAAACTCCTACAGGTCGTA+TGG 0.480293 7.4:-40832077 MS.gene055212:CDS
TCTGTTTATGCAGCCACTAA+AGG 0.493534 7.4:-40832816 MS.gene055212:intron
ACTTGCACACCCACTTCTAA+AGG 0.498917 7.4:-40832904 MS.gene055212:CDS
CAAGAACTTGGCATTAGAAT+GGG 0.500423 7.4:-40832675 MS.gene055212:CDS
GTTGTGTCTCAAACTCCTAC+AGG 0.501908 7.4:-40832085 MS.gene055212:CDS
AGTGATGTCTTAACAGGTCC+AGG 0.505141 7.4:+40832620 None:intergenic
CAGGTGGAACCCGAGGCATT+GGG 0.509603 7.4:-40833581 MS.gene055212:intron
TTCTAAAGGAATCTGGATAT+GGG 0.510619 7.4:-40832890 MS.gene055212:CDS
AGGAAAATACCCAATGCCTC+GGG 0.536044 7.4:+40833572 None:intergenic
CAAACTCCTACAGGTCGTAT+GGG 0.539151 7.4:-40832076 MS.gene055212:CDS
AAGGAAAATACCCAATGCCT+CGG 0.541189 7.4:+40833571 None:intergenic
TATCCAGATTCCTTTAGAAG+TGG 0.549645 7.4:+40832894 None:intergenic
ATCCAGATTCCTTTAGAAGT+GGG 0.552090 7.4:+40832895 None:intergenic
TTACAGGATTATGACTCTGA+GGG 0.555102 7.4:-40832127 MS.gene055212:intron
CCAGTGATGTGTGATGCAGC+TGG 0.556867 7.4:+40832010 None:intergenic
TTGGAAGAGTGGAAAAGCAA+GGG 0.557030 7.4:-40833245 MS.gene055212:CDS
GAGGGGTATAAAGCTGTAGC+TGG 0.557401 7.4:-40832109 MS.gene055212:CDS
CCAGCTGCATCACACATCAC+TGG 0.560488 7.4:-40832010 MS.gene055212:CDS
GCAGCTTCAAGGATAAAAGA+TGG 0.570695 7.4:-40833632 MS.gene055212:CDS
AAACTCCTACAGGTCGTATG+GGG 0.579169 7.4:-40832075 MS.gene055212:CDS
GATAAAAGATGGTCACTACA+TGG 0.585575 7.4:-40833621 MS.gene055212:CDS
TTTGGAAGAGTGGAAAAGCA+AGG 0.587401 7.4:-40833246 MS.gene055212:CDS
TGGAAGAGTGGAAAAGCAAG+GGG 0.590781 7.4:-40833244 MS.gene055212:CDS
GCTGCATAAACAGATATGAC+AGG 0.595042 7.4:+40832825 None:intergenic
ATCACTATTGGAATCAGTCA+TGG 0.598581 7.4:-40832603 MS.gene055212:intron
CTTACAGGATTATGACTCTG+AGG 0.599599 7.4:-40832128 MS.gene055212:intron
GGTATGACTGCGTTAGTGAC+AGG 0.615872 7.4:-40833600 MS.gene055212:CDS
CAAGTTATAGCTATTGATGG+AGG 0.616648 7.4:-40831986 MS.gene055212:CDS
GGTGTGCAAGTTGACACAAA+TGG 0.648867 7.4:+40832916 None:intergenic
TAATATTCGTGCAAATGCTG+TGG 0.649939 7.4:-40832645 MS.gene055212:CDS
TTAGTGACAGGTGGAACCCG+AGG 0.654837 7.4:-40833588 MS.gene055212:CDS
AACTCCTACAGGTCGTATGG+GGG 0.671752 7.4:-40832074 MS.gene055212:CDS
ATGACTGCGTTAGTGACAGG+TGG 0.701550 7.4:-40833597 MS.gene055212:CDS
TACAGGATTATGACTCTGAG+GGG 0.703497 7.4:-40832126 MS.gene055212:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACAAAATCAATTTAAA+AGG + chr7.4:40832128-40832147 None:intergenic 10.0%
!!! AAAATATTACACTTTTTTTT+AGG - chr7.4:40833241-40833260 MS.gene055212:CDS 10.0%
!!! AGTTGTTTTTTTTTTTTTAA+AGG + chr7.4:40832231-40832250 None:intergenic 10.0%
!!! ATCAAATTATTTTTTAGATA+AGG + chr7.4:40832906-40832925 None:intergenic 10.0%
!!! TATTTTTCTATTTTTAAACT+AGG - chr7.4:40832275-40832294 MS.gene055212:intron 10.0%
!! AAAGAATTACAATTCATTAT+AGG - chr7.4:40833424-40833443 MS.gene055212:intron 15.0%
!! AGATGATATTAATAAATGTT+TGG - chr7.4:40832360-40832379 MS.gene055212:intron 15.0%
!! TCTAAAAAATAATTTGATTC+AGG - chr7.4:40832908-40832927 MS.gene055212:CDS 15.0%
!! TGTTCATGTAATATTTATAT+AGG - chr7.4:40833052-40833071 MS.gene055212:intron 15.0%
!!! AATTTAGTGACTTTTAAATA+TGG + chr7.4:40833322-40833341 None:intergenic 15.0%
!!! ATTATCTATTATTTTCTTCA+TGG + chr7.4:40832638-40832657 None:intergenic 15.0%
!!! ATTTTTTATTTAGCATAGAA+AGG - chr7.4:40833339-40833358 MS.gene055212:intron 15.0%
!! AAAAATAAATTGATCGTACT+AGG + chr7.4:40832504-40832523 None:intergenic 20.0%
!! CTAATTTAATATGTTTGACA+TGG - chr7.4:40832169-40832188 MS.gene055212:intron 20.0%
!! GAAGATATAAATACTACAAT+TGG - chr7.4:40832664-40832683 MS.gene055212:CDS 20.0%
!! GTAATATTTATATAGGACTA+GGG - chr7.4:40833059-40833078 MS.gene055212:intron 20.0%
!! TAATATTTATATAGGACTAG+GGG - chr7.4:40833060-40833079 MS.gene055212:intron 20.0%
!! TCAAATTCAATTTATTCAAG+AGG + chr7.4:40832844-40832863 None:intergenic 20.0%
!! TGGTTATGAATTAATCTTTA+AGG - chr7.4:40833149-40833168 MS.gene055212:CDS 20.0%
!! TGTAATATTTATATAGGACT+AGG - chr7.4:40833058-40833077 MS.gene055212:intron 20.0%
!!! TGTATATAATGTTACCTTTT+AGG - chr7.4:40832591-40832610 MS.gene055212:intron 20.0%
! AAAATAATTTGATTCAGGAG+CGG - chr7.4:40832913-40832932 MS.gene055212:CDS 25.0%
! AATTCAATTTATTCAAGAGG+AGG + chr7.4:40832841-40832860 None:intergenic 25.0%
! ATGTTTATATTGCTTCTTAC+AGG - chr7.4:40833481-40833500 MS.gene055212:intron 25.0%
! TTAATAAATGTTTGGAAGAG+TGG - chr7.4:40832368-40832387 MS.gene055212:intron 25.0%
! TTCCTTATCTTAACTCTTAA+TGG - chr7.4:40832070-40832089 MS.gene055212:CDS 25.0%
!! ATTGGTACAAATTTTGTATC+TGG - chr7.4:40832682-40832701 MS.gene055212:CDS 25.0%
!! TCTATTATTTTCTTCATGGT+AGG + chr7.4:40832634-40832653 None:intergenic 25.0%
!!! ACTATTACTACTTTTAGTAG+TGG + chr7.4:40833276-40833295 None:intergenic 25.0%
ATGTTTGACATGGTAATTGA+TGG - chr7.4:40832179-40832198 MS.gene055212:intron 30.0%
TGCCATTAAGAGTTAAGATA+AGG + chr7.4:40832075-40832094 None:intergenic 30.0%
! AATAGCTTTTAAACCTGCAA+CGG + chr7.4:40832779-40832798 None:intergenic 30.0%
! ACTGTTTCTTCTATCTTTCA+AGG - chr7.4:40832466-40832485 MS.gene055212:intron 30.0%
! TCTTCTTAGGGTATCAAATT+TGG - chr7.4:40833129-40833148 MS.gene055212:intron 30.0%
! TTCTAAAGGAATCTGGATAT+GGG - chr7.4:40832734-40832753 MS.gene055212:intron 30.0%
!! TAAAGGTATCGACTAAATAG+TGG - chr7.4:40833100-40833119 MS.gene055212:intron 30.0%
AACAAAGTTAAGCAGCTTCA+AGG - chr7.4:40831981-40832000 MS.gene055212:CDS 35.0%
ACCTGTTAAGACATCACTAT+TGG - chr7.4:40833009-40833028 MS.gene055212:CDS 35.0%
ATCACTATTGGAATCAGTCA+TGG - chr7.4:40833021-40833040 MS.gene055212:intron 35.0%
CAAGAACTTGGCATTAGAAT+GGG - chr7.4:40832949-40832968 MS.gene055212:CDS 35.0%
CAAGTTATAGCTATTGATGG+AGG - chr7.4:40833638-40833657 MS.gene055212:CDS 35.0%
GAATCAATTCACCAAGAACT+TGG - chr7.4:40832937-40832956 MS.gene055212:CDS 35.0%
GATAAAAGATGGTCACTACA+TGG - chr7.4:40832003-40832022 MS.gene055212:CDS 35.0%
GGACAAGTTATAGCTATTGA+TGG - chr7.4:40833635-40833654 MS.gene055212:CDS 35.0%
GTTGAAGAGTTAGCTGAATT+TGG - chr7.4:40832307-40832326 MS.gene055212:intron 35.0%
TAATATTCGTGCAAATGCTG+TGG - chr7.4:40832979-40832998 MS.gene055212:CDS 35.0%
TCCAATAGTGATGTCTTAAC+AGG + chr7.4:40833013-40833032 None:intergenic 35.0%
TGAACAACGCAAGAGATTAA+TGG - chr7.4:40832441-40832460 MS.gene055212:intron 35.0%
TTACAGGATTATGACTCTGA+GGG - chr7.4:40833497-40833516 MS.gene055212:intron 35.0%
TTGATACCCTAAGAAGAATG+AGG + chr7.4:40833126-40833145 None:intergenic 35.0%
! ATCCAGATTCCTTTAGAAGT+GGG + chr7.4:40832732-40832751 None:intergenic 35.0%
! CTTCTAAAGGAATCTGGATA+TGG - chr7.4:40832733-40832752 MS.gene055212:intron 35.0%
! TAGTTCCAGCGTGTTATTAA+AGG - chr7.4:40833083-40833102 MS.gene055212:intron 35.0%
! TATCCAGATTCCTTTAGAAG+TGG + chr7.4:40832733-40832752 None:intergenic 35.0%
AAGGAAAATACCCAATGCCT+CGG + chr7.4:40832056-40832075 None:intergenic 40.0%
AGCAAGGGGTTTAATGTAAC+AGG - chr7.4:40832394-40832413 MS.gene055212:intron 40.0%
AGGAGGAAACATACCTTTAG+TGG + chr7.4:40832824-40832843 None:intergenic 40.0%
ATAGTGGCCTCATTCTTCTT+AGG - chr7.4:40833116-40833135 MS.gene055212:intron 40.0%
CCAAGAACTTGGCATTAGAA+TGG - chr7.4:40832948-40832967 MS.gene055212:CDS 40.0%
CCATTCTAATGCCAAGTTCT+TGG + chr7.4:40832951-40832970 None:intergenic 40.0%
CGATACCTTTAATAACACGC+TGG + chr7.4:40833091-40833110 None:intergenic 40.0%
CGCAGCATTGTTTACCTAAA+AGG + chr7.4:40832608-40832627 None:intergenic 40.0%
CTTACAGGATTATGACTCTG+AGG - chr7.4:40833496-40833515 MS.gene055212:intron 40.0%
GCAGCTTCAAGGATAAAAGA+TGG - chr7.4:40831992-40832011 MS.gene055212:CDS 40.0%
GCTGCATAAACAGATATGAC+AGG + chr7.4:40832802-40832821 None:intergenic 40.0%
TACAGGATTATGACTCTGAG+GGG - chr7.4:40833498-40833517 MS.gene055212:intron 40.0%
TAGTGGCCTCATTCTTCTTA+GGG - chr7.4:40833117-40833136 MS.gene055212:intron 40.0%
TCTGTTTATGCAGCCACTAA+AGG - chr7.4:40832808-40832827 MS.gene055212:intron 40.0%
TTGGAAGAGTGGAAAAGCAA+GGG - chr7.4:40832379-40832398 MS.gene055212:intron 40.0%
TTTGGAAGAGTGGAAAAGCA+AGG - chr7.4:40832378-40832397 MS.gene055212:intron 40.0%
AAACTCCTACAGGTCGTATG+GGG - chr7.4:40833549-40833568 MS.gene055212:intron 45.0%
ACTTGCACACCCACTTCTAA+AGG - chr7.4:40832720-40832739 MS.gene055212:intron 45.0%
AGGAAAATACCCAATGCCTC+GGG + chr7.4:40832055-40832074 None:intergenic 45.0%
AGTGATGTCTTAACAGGTCC+AGG + chr7.4:40833007-40833026 None:intergenic 45.0%
CAAACTCCTACAGGTCGTAT+GGG - chr7.4:40833548-40833567 MS.gene055212:intron 45.0%
GTGTTTACTTCTTCCGTTGC+AGG - chr7.4:40832763-40832782 MS.gene055212:intron 45.0%
GTTGTGTCTCAAACTCCTAC+AGG - chr7.4:40833539-40833558 MS.gene055212:intron 45.0%
TCAAACTCCTACAGGTCGTA+TGG - chr7.4:40833547-40833566 MS.gene055212:intron 45.0%
TGGAAGAGTGGAAAAGCAAG+GGG - chr7.4:40832380-40832399 MS.gene055212:intron 45.0%
! CACCCACTTCTAAAGGAATC+TGG - chr7.4:40832727-40832746 MS.gene055212:intron 45.0%
! GGTGTGCAAGTTGACACAAA+TGG + chr7.4:40832711-40832730 None:intergenic 45.0%
AACTCCTACAGGTCGTATGG+GGG - chr7.4:40833550-40833569 MS.gene055212:intron 50.0%
ATGACTGCGTTAGTGACAGG+TGG - chr7.4:40832027-40832046 MS.gene055212:CDS 50.0%
GGTATGACTGCGTTAGTGAC+AGG - chr7.4:40832024-40832043 MS.gene055212:CDS 50.0%
! GAGGGGTATAAAGCTGTAGC+TGG - chr7.4:40833515-40833534 MS.gene055212:intron 50.0%
CCAGCTGCATCACACATCAC+TGG - chr7.4:40833614-40833633 MS.gene055212:CDS 55.0%
CCAGTGATGTGTGATGCAGC+TGG + chr7.4:40833617-40833636 None:intergenic 55.0%
TTAGTGACAGGTGGAACCCG+AGG - chr7.4:40832036-40832055 MS.gene055212:CDS 55.0%
ACAGGTGGAACCCGAGGCAT+TGG - chr7.4:40832042-40832061 MS.gene055212:CDS 60.0%
CGTGCAAATGCTGTGGCACC+TGG - chr7.4:40832986-40833005 MS.gene055212:CDS 60.0%
GTCTCCCCCATACGACCTGT+AGG + chr7.4:40833557-40833576 None:intergenic 60.0%
! CAGGTGGAACCCGAGGCATT+GGG - chr7.4:40832043-40832062 MS.gene055212:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 40831973 40833673 40831973 ID=MS.gene055212
chr7.4 mRNA 40831973 40833673 40831973 ID=MS.gene055212.t1;Parent=MS.gene055212
chr7.4 exon 40833582 40833673 40833582 ID=MS.gene055212.t1.exon1;Parent=MS.gene055212.t1
chr7.4 CDS 40833582 40833673 40833582 ID=cds.MS.gene055212.t1;Parent=MS.gene055212.t1
chr7.4 exon 40833142 40833349 40833142 ID=MS.gene055212.t1.exon2;Parent=MS.gene055212.t1
chr7.4 CDS 40833142 40833349 40833142 ID=cds.MS.gene055212.t1;Parent=MS.gene055212.t1
chr7.4 exon 40832817 40833033 40832817 ID=MS.gene055212.t1.exon3;Parent=MS.gene055212.t1
chr7.4 CDS 40832817 40833033 40832817 ID=cds.MS.gene055212.t1;Parent=MS.gene055212.t1
chr7.4 exon 40832604 40832716 40832604 ID=MS.gene055212.t1.exon4;Parent=MS.gene055212.t1
chr7.4 CDS 40832604 40832716 40832604 ID=cds.MS.gene055212.t1;Parent=MS.gene055212.t1
chr7.4 exon 40831973 40832143 40831973 ID=MS.gene055212.t1.exon5;Parent=MS.gene055212.t1
chr7.4 CDS 40831973 40832143 40831973 ID=cds.MS.gene055212.t1;Parent=MS.gene055212.t1
Gene Sequence

>MS.gene055212

ATGGCTGAAACAAAGTTAAGCAGCTTCAAGGATAAAAGATGGTCACTACATGGTATGACTGCGTTAGTGACAGGTGGAACCCGAGGCATTGGGTATTTTCCTTATCTTAACTCTTAATGGCAAAATTAAAAATGAAAAAAAAAAAGATATTGCCTTTTAAATTGATTTTGTAATTTATTTTTTAAAATTTTTGTTACTAATTTAATATGTTTGACATGGTAATTGATGGATGACTATTTTTAAAAAATTTACATTCCTTTAAAAAAAAAAAAACAACTTTATATGATAATTTCTTACATGTATATTTTTCTATTTTTAAACTAGGTACGCAATTGTTGAAGAGTTAGCTGAATTTGGAGCATCTGTGCATATATGTGCACGTAATGAAGATGATATTAATAAATGTTTGGAAGAGTGGAAAAGCAAGGGGTTTAATGTAACAGGATCAGTATGTGATATACTATTTCATGAACAACGCAAGAGATTAATGGAAACTGTTTCTTCTATCTTTCAAGGAAAGCTCAATATCCTAGTACGATCAATTTATTTTTTTATTTATTTGTTTTGACTCTAAGTGCTCATAACATTTATGTAATTTTATTTTGTGACAATATATAATGTATATAATGTTACCTTTTAGGTAAACAATGCTGCGAAACCTACCATGAAGAAAATAATAGATAATACTGATGAAGATATAAATACTACAATTGGTACAAATTTTGTATCTGGTTACCATTTGTGTCAACTTGCACACCCACTTCTAAAGGAATCTGGATATGGGAGCATAGTGTTTACTTCTTCCGTTGCAGGTTTAAAAGCTATTCCTGTCATATCTGTTTATGCAGCCACTAAAGGTATGTTTCCTCCTCTTGAATAAATTGAATTTGATACTTAAATTTGAGATAAGATATAAAATATAAAATATAACCTTATCTAAAAAATAATTTGATTCAGGAGCGGTGAATCAATTCACCAAGAACTTGGCATTAGAATGGGCAAAAGATAATATTCGTGCAAATGCTGTGGCACCTGGACCTGTTAAGACATCACTATTGGAATCAGTCATGGTATGCATTTGTTCATGTAATATTTATATAGGACTAGGGGTAGTTCCAGCGTGTTATTAAAGGTATCGACTAAATAGTGGCCTCATTCTTCTTAGGGTATCAAATTTGGTTATGAATTAATCTTTAAGGTGCATCAAACATGAAATTTTAAAAAATTGTTTACAGATAAACTTTTACTGTTTTTCATAAATTTTTAATAAAATATTACACTTTTTTTTAGGTTATAAAATCCACTACTAAAAGTAGTAATAGTTCACGTTTAGACTTTTTTTAGATCCATATTTAAAAGTCACTAAATTTTTTATTTAGCATAGAAAGGATAAATATCTTGAAACTTATAAAAAATGTAATAATTCTTATCATCTTTGATGATTAATATTTAAAGAATTACAATTCATTATAGGCATATTTAAAATTGAGAATTGTTGATAAGTATAAATGTTTATATTGCTTCTTACAGGATTATGACTCTGAGGGGTATAAAGCTGTAGCTGGTGTTGTGTCTCAAACTCCTACAGGTCGTATGGGGGAGACTAAAGAGATATCAGCATTAGTTGCTTTTCTTTGTCTTCCAGCTGCATCACACATCACTGGACAAGTTATAGCTATTGATGGAGGTTACACTTCCTAG

Protein sequence

>MS.gene055212.t1

MAETKLSSFKDKRWSLHGMTALVTGGTRGIGYAIVEELAEFGASVHICARNEDDINKCLEEWKSKGFNVTGSVCDILFHEQRKRLMETVSSIFQGKLNILVNNAAKPTMKKIIDNTDEDINTTIGTNFVSGYHLCQLAHPLLKESGYGSIVFTSSVAGLKAIPVISVYAATKGAVNQFTKNLALEWAKDNIRANAVAPGPVKTSLLESVMDYDSEGYKAVAGVVSQTPTGRMGETKEISALVAFLCLPAASHITGQVIAIDGGYTS