Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35433.t1 | XP_003596846.1 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 7.80E-95 | 356.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35433.t1 | G7IHF9 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 1.9e-97 | 356.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35433.t1 | A0A396JB04 | 95.9 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 5.6e-95 | 356.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene35433 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene35433 | 0.806788 | 6.94E-50 | -1.69E-46 |
| MS.gene050133 | MS.gene35433 | 0.824985 | 6.00E-54 | -1.69E-46 |
| MS.gene051552 | MS.gene35433 | 0.807546 | 4.79E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene35433 | 0.829236 | 5.76E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene35433 | 0.821702 | 3.51E-53 | -1.69E-46 |
| MS.gene052223 | MS.gene35433 | 0.860858 | 1.54E-63 | -1.69E-46 |
| MS.gene054138 | MS.gene35433 | 0.814565 | 1.44E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene35433 | 0.818317 | 2.09E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene35433 | 0.848485 | 5.95E-60 | -1.69E-46 |
| MS.gene056330 | MS.gene35433 | 0.871803 | 5.17E-67 | -1.69E-46 |
| MS.gene056690 | MS.gene35433 | 0.847443 | 1.15E-59 | -1.69E-46 |
| MS.gene056691 | MS.gene35433 | 0.817378 | 3.40E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene35433 | 0.815218 | 1.03E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene35433 | 0.846569 | 2.00E-59 | -1.69E-46 |
| MS.gene056922 | MS.gene35433 | 0.850487 | 1.64E-60 | -1.69E-46 |
| MS.gene056923 | MS.gene35433 | 0.849305 | 3.52E-60 | -1.69E-46 |
| MS.gene056924 | MS.gene35433 | 0.853925 | 1.73E-61 | -1.69E-46 |
| MS.gene056925 | MS.gene35433 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene059043 | MS.gene35433 | 0.833367 | 5.56E-56 | -1.69E-46 |
| MS.gene059328 | MS.gene35433 | 0.810569 | 1.08E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene35433 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene059892 | MS.gene35433 | 0.80553 | 1.28E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene35433 | 0.836755 | 7.77E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35433.t1 | MTR_2g086740 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 2.13e-157 | 434 |
| MS.gene35433.t1 | MTR_2g086740 | 96.667 | 150 | 5 | 0 | 1 | 150 | 1 | 150 | 8.28e-106 | 301 |
| MS.gene35433.t1 | MTR_1g058540 | 59.064 | 171 | 70 | 0 | 49 | 219 | 25 | 195 | 4.12e-61 | 190 |
| MS.gene35433.t1 | MTR_1g058560 | 59.538 | 173 | 70 | 0 | 47 | 219 | 22 | 194 | 2.04e-57 | 180 |
| MS.gene35433.t1 | MTR_1g058570 | 56.725 | 171 | 74 | 0 | 49 | 219 | 23 | 193 | 3.29e-55 | 175 |
| MS.gene35433.t1 | MTR_7g011090 | 48.276 | 174 | 90 | 0 | 46 | 219 | 12 | 185 | 1.41e-50 | 162 |
| MS.gene35433.t1 | MTR_4g081880 | 43.243 | 185 | 99 | 1 | 42 | 220 | 3 | 187 | 1.08e-46 | 153 |
| MS.gene35433.t1 | MTR_5g041900 | 43.590 | 195 | 100 | 1 | 26 | 220 | 2 | 186 | 4.12e-42 | 141 |
| MS.gene35433.t1 | MTR_7g083120 | 33.094 | 139 | 90 | 2 | 65 | 202 | 33 | 169 | 3.80e-16 | 73.9 |
| MS.gene35433.t1 | MTR_0004s0210 | 34.899 | 149 | 84 | 4 | 55 | 201 | 1 | 138 | 6.16e-16 | 72.8 |
| MS.gene35433.t1 | MTR_7g108130 | 28.877 | 187 | 115 | 5 | 24 | 206 | 3 | 175 | 4.40e-15 | 71.2 |
| MS.gene35433.t1 | MTR_3g064310 | 28.141 | 199 | 103 | 5 | 40 | 216 | 7 | 187 | 3.36e-14 | 69.3 |
| MS.gene35433.t1 | MTR_0097s0070 | 29.565 | 115 | 81 | 0 | 99 | 213 | 71 | 185 | 4.90e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35433.t1 | AT2G27370 | 49.091 | 220 | 103 | 4 | 3 | 220 | 8 | 220 | 3.56e-64 | 198 |
| MS.gene35433.t1 | AT2G36100 | 54.762 | 168 | 76 | 0 | 52 | 219 | 38 | 205 | 9.44e-59 | 184 |
| MS.gene35433.t1 | AT5G06200 | 60.479 | 167 | 66 | 0 | 53 | 219 | 35 | 201 | 3.92e-54 | 172 |
| MS.gene35433.t1 | AT5G15290 | 49.686 | 159 | 79 | 1 | 43 | 200 | 8 | 166 | 1.53e-51 | 165 |
| MS.gene35433.t1 | AT3G11550 | 59.880 | 167 | 67 | 0 | 53 | 219 | 37 | 203 | 6.86e-50 | 161 |
| MS.gene35433.t1 | AT1G14160 | 43.030 | 165 | 94 | 0 | 55 | 219 | 44 | 208 | 2.74e-42 | 142 |
| MS.gene35433.t1 | AT1G17200 | 29.193 | 161 | 105 | 3 | 58 | 217 | 29 | 181 | 2.77e-15 | 72.0 |
| MS.gene35433.t1 | AT3G06390 | 28.161 | 174 | 104 | 4 | 24 | 190 | 11 | 170 | 3.28e-15 | 71.6 |
| MS.gene35433.t1 | AT5G44550 | 30.247 | 162 | 101 | 4 | 66 | 219 | 22 | 179 | 5.97e-12 | 62.8 |
| MS.gene35433.t1 | AT1G03700 | 32.000 | 150 | 80 | 5 | 65 | 206 | 12 | 147 | 2.96e-11 | 60.1 |
| MS.gene35433.t1 | AT4G15610 | 27.545 | 167 | 117 | 2 | 40 | 202 | 7 | 173 | 5.35e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTTCTCTTGGATTCT+AGG | 0.131201 | 2.1:+15485475 | None:intergenic |
| TCTTGGTGCTTCTGTCATTA+TGG | 0.177988 | 2.1:-15485298 | MS.gene35433:CDS |
| TACCTAATTGCAGGTATTAA+TGG | 0.240857 | 2.1:-15484390 | MS.gene35433:intron |
| TCCATTGCTTCTTGTTCTCT+TGG | 0.247900 | 2.1:+15485467 | None:intergenic |
| CTTGGTGCTTCTGTCATTAT+GGG | 0.276810 | 2.1:-15485297 | MS.gene35433:CDS |
| AAATCTACTCCAATCCAAAA+AGG | 0.350579 | 2.1:-15485384 | MS.gene35433:CDS |
| TCCTTCAGTTTCATGCTCAA+TGG | 0.391797 | 2.1:-15485239 | MS.gene35433:CDS |
| CCTTCAGTTTCATGCTCAAT+GGG | 0.394063 | 2.1:-15485238 | MS.gene35433:CDS |
| GGTGCCATTGGTGCTACTCT+TGG | 0.400369 | 2.1:-15485315 | MS.gene35433:CDS |
| TGTTCTCTTGGATTCTAGGA+TGG | 0.406134 | 2.1:+15485479 | None:intergenic |
| GCAGGTATTAATGGCCTTAG+TGG | 0.406928 | 2.1:-15484381 | MS.gene35433:intron |
| ACATGAACTTACTTAAACAT+TGG | 0.425523 | 2.1:+15485207 | None:intergenic |
| AGAACAAGAAGCAATGGAAA+AGG | 0.427010 | 2.1:-15485462 | MS.gene35433:CDS |
| ACACCACAACCAAACAAGAT+AGG | 0.440488 | 2.1:+15484210 | None:intergenic |
| ATGGGAGTCAAGATGCAAAC+TGG | 0.445257 | 2.1:-15484313 | MS.gene35433:CDS |
| GTTCTCTTGGATTCTAGGAT+GGG | 0.446748 | 2.1:+15485480 | None:intergenic |
| CTAAACATGCAGGTTCTTTG+TGG | 0.448810 | 2.1:-15484634 | MS.gene35433:intron |
| GAACAAGAAGCAATGGAAAA+GGG | 0.449907 | 2.1:-15485461 | MS.gene35433:CDS |
| ATTGTTAGACCCCTTGCAGC+TGG | 0.465698 | 2.1:-15484552 | MS.gene35433:CDS |
| GGAAAAGGGAAATCCATTGA+TGG | 0.488181 | 2.1:-15485447 | MS.gene35433:CDS |
| TTTCCTATCTTGTTTGGTTG+TGG | 0.489463 | 2.1:-15484213 | MS.gene35433:CDS |
| CCAAGGTTCAAGTTTGGCTG+TGG | 0.491266 | 2.1:-15484258 | MS.gene35433:CDS |
| GTGGCAAATGGAGCAGCAGC+TGG | 0.512854 | 2.1:-15484612 | MS.gene35433:CDS |
| TTGTGTACTTAGCACACAAT+GGG | 0.520027 | 2.1:-15484331 | MS.gene35433:CDS |
| TGTCTTCTGTAGCTCTCAAA+AGG | 0.525875 | 2.1:-15484190 | MS.gene35433:CDS |
| AGGTTCTTTGTGGTGGCAAA+TGG | 0.527477 | 2.1:-15484624 | MS.gene35433:CDS |
| GACCCCTTGCAGCTGGTCCA+CGG | 0.529518 | 2.1:-15484545 | MS.gene35433:CDS |
| TCCAAGAGAACAAGAAGCAA+TGG | 0.530743 | 2.1:-15485468 | MS.gene35433:CDS |
| CCACAGCCAAACTTGAACCT+TGG | 0.532217 | 2.1:+15484258 | None:intergenic |
| AGGAGAATGATCTCCATCAA+TGG | 0.544643 | 2.1:+15485434 | None:intergenic |
| TGAAGCAGCTGCAACCACTA+AGG | 0.546688 | 2.1:+15484367 | None:intergenic |
| TGAAGGAACTGAGTAAAGAA+AGG | 0.555422 | 2.1:+15485255 | None:intergenic |
| AATCCGTGGACCAGCTGCAA+GGG | 0.560165 | 2.1:+15484542 | None:intergenic |
| AACATGCAGGTTCTTTGTGG+TGG | 0.566783 | 2.1:-15484631 | MS.gene35433:intron |
| GGACTCAAGAAGAGAAGTTG+AGG | 0.570390 | 2.1:-15485517 | MS.gene35433:CDS |
| TTGGTGCTTCTGTCATTATG+GGG | 0.574068 | 2.1:-15485296 | MS.gene35433:CDS |
| GCAGACAATTGAGAATGGTA+AGG | 0.574191 | 2.1:+15484575 | None:intergenic |
| GGTTGTTTCTTTCGTCGCGT+CGG | 0.575059 | 2.1:-15484237 | MS.gene35433:CDS |
| ACAATGCAGACAATTGAGAA+TGG | 0.577153 | 2.1:+15484570 | None:intergenic |
| CCCATTGAGCATGAAACTGA+AGG | 0.601992 | 2.1:+15485238 | None:intergenic |
| GAATCCGTGGACCAGCTGCA+AGG | 0.605753 | 2.1:+15484541 | None:intergenic |
| AGCACCAAGAGTAGCACCAA+TGG | 0.630653 | 2.1:+15485311 | None:intergenic |
| GTTGTGTACTTAGCACACAA+TGG | 0.633961 | 2.1:-15484332 | MS.gene35433:CDS |
| ATCCGTGGACCAGCTGCAAG+GGG | 0.635198 | 2.1:+15484543 | None:intergenic |
| CAATTGAGAATGGTAAGGAG+AGG | 0.647713 | 2.1:+15484580 | None:intergenic |
| ACAACAGTTGCAGCATGTGG+AGG | 0.650553 | 2.1:+15485414 | None:intergenic |
| GTAACAACAGTTGCAGCATG+TGG | 0.663640 | 2.1:+15485411 | None:intergenic |
| ACGATGACAAGTAGAATCCG+TGG | 0.676654 | 2.1:+15484528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACAATTAATTGTATTTT+TGG | - | chr2.1:15484618-15484637 | MS.gene35433:CDS | 10.0% |
| !! | AAAAAAAAAATGTTCTTAGA+GGG | - | chr2.1:15484862-15484881 | MS.gene35433:intron | 15.0% |
| !! | AAACAATAAATTTCAAGAAT+AGG | - | chr2.1:15484812-15484831 | MS.gene35433:intron | 15.0% |
| !!! | TTTAAATATCATCCTTTTTA+TGG | - | chr2.1:15485044-15485063 | MS.gene35433:intron | 15.0% |
| !! | AATTGTGTTTCAGTTAAAAT+AGG | + | chr2.1:15484648-15484667 | None:intergenic | 20.0% |
| !! | ATAGTATTGTAAAGATCAAA+TGG | + | chr2.1:15484539-15484558 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAATGTTCTTAG+AGG | - | chr2.1:15484861-15484880 | MS.gene35433:intron | 20.0% |
| !! | TAGTATTGTAAAGATCAAAT+GGG | + | chr2.1:15484538-15484557 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGTTTTGAAACAA+GGG | + | chr2.1:15484705-15484724 | None:intergenic | 20.0% |
| ! | ACATGAACTTACTTAAACAT+TGG | + | chr2.1:15484499-15484518 | None:intergenic | 25.0% |
| ! | AGTAAGTTCATGTTACATAA+CGG | - | chr2.1:15484506-15484525 | MS.gene35433:intron | 25.0% |
| ! | TTACATCCGATAAATGAAAT+CGG | - | chr2.1:15484836-15484855 | MS.gene35433:intron | 25.0% |
| ! | TTTCTTCCGATTTCATTTAT+CGG | + | chr2.1:15484845-15484864 | None:intergenic | 25.0% |
| !! | CAATCTTAGACTTCATTTTA+AGG | - | chr2.1:15484362-15484381 | MS.gene35433:CDS | 25.0% |
| !!! | AACACTTTTTAAGAATGACT+TGG | - | chr2.1:15484587-15484606 | MS.gene35433:CDS | 25.0% |
| !!! | GAAAAAAGTTTTGAAACAAG+GGG | + | chr2.1:15484704-15484723 | None:intergenic | 25.0% |
| !!! | GAGAAAAAAGTTTTGAAACA+AGG | + | chr2.1:15484706-15484725 | None:intergenic | 25.0% |
| !!! | TTTTCTCACAACTTAATTTG+AGG | - | chr2.1:15484719-15484738 | MS.gene35433:intron | 25.0% |
| AAATCTACTCCAATCCAAAA+AGG | - | chr2.1:15484319-15484338 | MS.gene35433:CDS | 30.0% | |
| AACATGTCACGTCATAAAAT+AGG | + | chr2.1:15484748-15484767 | None:intergenic | 30.0% | |
| CAAAAAGGTGGAATGAAAAA+GGG | - | chr2.1:15484334-15484353 | MS.gene35433:CDS | 30.0% | |
| GCATGTTTAGATCCATAAAA+AGG | + | chr2.1:15485059-15485078 | None:intergenic | 30.0% | |
| TACCTAATTGCAGGTATTAA+TGG | - | chr2.1:15485313-15485332 | MS.gene35433:CDS | 30.0% | |
| TGTGTTTCAGTTAAAATAGG+AGG | + | chr2.1:15484645-15484664 | None:intergenic | 30.0% | |
| ! | TTTTATGGATCTAAACATGC+AGG | - | chr2.1:15485059-15485078 | MS.gene35433:intron | 30.0% |
| !! | ACGATATGAGAGTGTTTATT+TGG | + | chr2.1:15484894-15484913 | None:intergenic | 30.0% |
| !!! | TAAACAATGTTTTGATGACG+TGG | + | chr2.1:15484927-15484946 | None:intergenic | 30.0% |
| !!! | TTAGACTTCATTTTAAGGCT+TGG | - | chr2.1:15484367-15484386 | MS.gene35433:CDS | 30.0% |
| ACAATGCAGACAATTGAGAA+TGG | + | chr2.1:15485136-15485155 | None:intergenic | 35.0% | |
| AGAACAAGAAGCAATGGAAA+AGG | - | chr2.1:15484241-15484260 | MS.gene35433:CDS | 35.0% | |
| CCAAAAAGGTGGAATGAAAA+AGG | - | chr2.1:15484333-15484352 | MS.gene35433:CDS | 35.0% | |
| CGAAATTGCAAGGATATGAA+GGG | + | chr2.1:15485000-15485019 | None:intergenic | 35.0% | |
| GAACAAGAAGCAATGGAAAA+GGG | - | chr2.1:15484242-15484261 | MS.gene35433:CDS | 35.0% | |
| TGAAGGAACTGAGTAAAGAA+AGG | + | chr2.1:15484451-15484470 | None:intergenic | 35.0% | |
| TTCTTGTTCTCTTGGATTCT+AGG | + | chr2.1:15484231-15484250 | None:intergenic | 35.0% | |
| TTGTGTACTTAGCACACAAT+GGG | - | chr2.1:15485372-15485391 | MS.gene35433:CDS | 35.0% | |
| ! | TTCATTCCACCTTTTTGGAT+TGG | + | chr2.1:15484331-15484350 | None:intergenic | 35.0% |
| ! | TTTCCTATCTTGTTTGGTTG+TGG | - | chr2.1:15485490-15485509 | MS.gene35433:CDS | 35.0% |
| !! | CCTTTTTCATTCCACCTTTT+TGG | + | chr2.1:15484336-15484355 | None:intergenic | 35.0% |
| !! | TTTTTGCCAAGGTTCAAGTT+TGG | - | chr2.1:15485439-15485458 | MS.gene35433:CDS | 35.0% |
| AATGTTCGCTACCTAATTGC+AGG | - | chr2.1:15485304-15485323 | MS.gene35433:CDS | 40.0% | |
| AATTGCAAGGATATGAAGGG+AGG | + | chr2.1:15484997-15485016 | None:intergenic | 40.0% | |
| ACACCACAACCAAACAAGAT+AGG | + | chr2.1:15485496-15485515 | None:intergenic | 40.0% | |
| AGGAGAATGATCTCCATCAA+TGG | + | chr2.1:15484272-15484291 | None:intergenic | 40.0% | |
| CAATTGAGAATGGTAAGGAG+AGG | + | chr2.1:15485126-15485145 | None:intergenic | 40.0% | |
| CCTTCAGTTTCATGCTCAAT+GGG | - | chr2.1:15484465-15484484 | MS.gene35433:intron | 40.0% | |
| CTAAACATGCAGGTTCTTTG+TGG | - | chr2.1:15485069-15485088 | MS.gene35433:intron | 40.0% | |
| CTATAGCAAGTAAAGATGCC+AGG | + | chr2.1:15485023-15485042 | None:intergenic | 40.0% | |
| GCAGACAATTGAGAATGGTA+AGG | + | chr2.1:15485131-15485150 | None:intergenic | 40.0% | |
| GCGAAATTGCAAGGATATGA+AGG | + | chr2.1:15485001-15485020 | None:intergenic | 40.0% | |
| GGAAAAGGGAAATCCATTGA+TGG | - | chr2.1:15484256-15484275 | MS.gene35433:CDS | 40.0% | |
| GGCCATTAATACCTGCAATT+AGG | + | chr2.1:15485318-15485337 | None:intergenic | 40.0% | |
| GTTGTGTACTTAGCACACAA+TGG | - | chr2.1:15485371-15485390 | MS.gene35433:CDS | 40.0% | |
| TCCAAGAGAACAAGAAGCAA+TGG | - | chr2.1:15484235-15484254 | MS.gene35433:CDS | 40.0% | |
| TCCATTGCTTCTTGTTCTCT+TGG | + | chr2.1:15484239-15484258 | None:intergenic | 40.0% | |
| TCCTTCAGTTTCATGCTCAA+TGG | - | chr2.1:15484464-15484483 | MS.gene35433:intron | 40.0% | |
| TCTACTCCAATCCAAAAAGG+TGG | - | chr2.1:15484322-15484341 | MS.gene35433:CDS | 40.0% | |
| TGTCTTCTGTAGCTCTCAAA+AGG | - | chr2.1:15485513-15485532 | MS.gene35433:CDS | 40.0% | |
| ! | TGTTCTCTTGGATTCTAGGA+TGG | + | chr2.1:15484227-15484246 | None:intergenic | 40.0% |
| ! | TTGGTGCTTCTGTCATTATG+GGG | - | chr2.1:15484407-15484426 | MS.gene35433:intron | 40.0% |
| !! | CTTGGTGCTTCTGTCATTAT+GGG | - | chr2.1:15484406-15484425 | MS.gene35433:intron | 40.0% |
| !! | GTCGGTTTTCCTATCTTGTT+TGG | - | chr2.1:15485484-15485503 | MS.gene35433:CDS | 40.0% |
| !! | GTTCTCTTGGATTCTAGGAT+GGG | + | chr2.1:15484226-15484245 | None:intergenic | 40.0% |
| !! | TCTTGGTGCTTCTGTCATTA+TGG | - | chr2.1:15484405-15484424 | MS.gene35433:intron | 40.0% |
| !!! | ATTTTAAGGCTTGGTGCCAT+TGG | - | chr2.1:15484376-15484395 | MS.gene35433:CDS | 40.0% |
| !!! | CAGTTCACTGATTTTTGCCA+AGG | - | chr2.1:15485428-15485447 | MS.gene35433:CDS | 40.0% |
| AACATGCAGGTTCTTTGTGG+TGG | - | chr2.1:15485072-15485091 | MS.gene35433:intron | 45.0% | |
| ACGATGACAAGTAGAATCCG+TGG | + | chr2.1:15485178-15485197 | None:intergenic | 45.0% | |
| AGGTTCTTTGTGGTGGCAAA+TGG | - | chr2.1:15485079-15485098 | MS.gene35433:intron | 45.0% | |
| ATGGGAGTCAAGATGCAAAC+TGG | - | chr2.1:15485390-15485409 | MS.gene35433:CDS | 45.0% | |
| CATATCCTTGCAATTTCGCC+TGG | - | chr2.1:15485002-15485021 | MS.gene35433:intron | 45.0% | |
| CCCATTGAGCATGAAACTGA+AGG | + | chr2.1:15484468-15484487 | None:intergenic | 45.0% | |
| GGACTCAAGAAGAGAAGTTG+AGG | - | chr2.1:15484186-15484205 | MS.gene35433:CDS | 45.0% | |
| GTAACAACAGTTGCAGCATG+TGG | + | chr2.1:15484295-15484314 | None:intergenic | 45.0% | |
| ! | GCAGGTATTAATGGCCTTAG+TGG | - | chr2.1:15485322-15485341 | MS.gene35433:CDS | 45.0% |
| ACAACAGTTGCAGCATGTGG+AGG | + | chr2.1:15484292-15484311 | None:intergenic | 50.0% | |
| AGATGCCAGGCGAAATTGCA+AGG | + | chr2.1:15485010-15485029 | None:intergenic | 50.0% | |
| AGCACCAAGAGTAGCACCAA+TGG | + | chr2.1:15484395-15484414 | None:intergenic | 50.0% | |
| ATTGTTAGACCCCTTGCAGC+TGG | - | chr2.1:15485151-15485170 | MS.gene35433:intron | 50.0% | |
| CCACAGCCAAACTTGAACCT+TGG | + | chr2.1:15485448-15485467 | None:intergenic | 50.0% | |
| TGAAGCAGCTGCAACCACTA+AGG | + | chr2.1:15485339-15485358 | None:intergenic | 50.0% | |
| ! | CCAAGGTTCAAGTTTGGCTG+TGG | - | chr2.1:15485445-15485464 | MS.gene35433:CDS | 50.0% |
| !! | GGTTGTTTCTTTCGTCGCGT+CGG | - | chr2.1:15485466-15485485 | MS.gene35433:CDS | 50.0% |
| AATCCGTGGACCAGCTGCAA+GGG | + | chr2.1:15485164-15485183 | None:intergenic | 55.0% | |
| !! | GGTGCCATTGGTGCTACTCT+TGG | - | chr2.1:15484388-15484407 | MS.gene35433:intron | 55.0% |
| ATCCGTGGACCAGCTGCAAG+GGG | + | chr2.1:15485163-15485182 | None:intergenic | 60.0% | |
| GAATCCGTGGACCAGCTGCA+AGG | + | chr2.1:15485165-15485184 | None:intergenic | 60.0% | |
| GTGGCAAATGGAGCAGCAGC+TGG | - | chr2.1:15485091-15485110 | MS.gene35433:intron | 60.0% | |
| GACCCCTTGCAGCTGGTCCA+CGG | - | chr2.1:15485158-15485177 | MS.gene35433:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 15484184 | 15485541 | 15484184 | ID=MS.gene35433 |
| chr2.1 | mRNA | 15484184 | 15485541 | 15484184 | ID=MS.gene35433.t1;Parent=MS.gene35433 |
| chr2.1 | exon | 15485219 | 15485541 | 15485219 | ID=MS.gene35433.t1.exon1;Parent=MS.gene35433.t1 |
| chr2.1 | CDS | 15485219 | 15485541 | 15485219 | ID=cds.MS.gene35433.t1;Parent=MS.gene35433.t1 |
| chr2.1 | exon | 15484521 | 15484644 | 15484521 | ID=MS.gene35433.t1.exon2;Parent=MS.gene35433.t1 |
| chr2.1 | CDS | 15484521 | 15484644 | 15484521 | ID=cds.MS.gene35433.t1;Parent=MS.gene35433.t1 |
| chr2.1 | exon | 15484184 | 15484399 | 15484184 | ID=MS.gene35433.t1.exon3;Parent=MS.gene35433.t1 |
| chr2.1 | CDS | 15484184 | 15484399 | 15484184 | ID=cds.MS.gene35433.t1;Parent=MS.gene35433.t1 |
| Gene Sequence |
| Protein sequence |
