Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37037.t1 | XP_013444087.1 | 100 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 4.00E-112 | 414.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37037.t1 | P49199 | 87.2 | 219 | 24 | 1 | 1 | 215 | 1 | 219 | 1.0e-100 | 367.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37037.t1 | I3T3T7 | 100.0 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 2.9e-112 | 414.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene37037 | 0.828798 | 7.36E-55 | -1.69E-46 |
| MS.gene050290 | MS.gene37037 | 0.82538 | 4.84E-54 | -1.69E-46 |
| MS.gene050791 | MS.gene37037 | 0.848252 | 6.90E-60 | -1.69E-46 |
| MS.gene050912 | MS.gene37037 | 0.823974 | 1.04E-53 | -1.69E-46 |
| MS.gene051904 | MS.gene37037 | 0.81342 | 2.58E-51 | -1.69E-46 |
| MS.gene053224 | MS.gene37037 | 0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene054937 | MS.gene37037 | 0.802554 | 5.31E-49 | -1.69E-46 |
| MS.gene056257 | MS.gene37037 | 0.800434 | 1.44E-48 | -1.69E-46 |
| MS.gene056917 | MS.gene37037 | 0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene057272 | MS.gene37037 | 0.811612 | 6.42E-51 | -1.69E-46 |
| MS.gene057771 | MS.gene37037 | 0.828161 | 1.05E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37037 | MS.gene23040 | PPI |
| MS.gene37037 | MS.gene06433 | PPI |
| MS.gene049306 | MS.gene37037 | PPI |
| MS.gene013335 | MS.gene37037 | PPI |
| MS.gene37037 | MS.gene30990 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37037.t1 | MTR_8g012325 | 100.000 | 215 | 0 | 0 | 1 | 215 | 1 | 215 | 5.57e-159 | 438 |
| MS.gene37037.t1 | MTR_7g053450 | 91.705 | 217 | 16 | 1 | 1 | 215 | 1 | 217 | 1.17e-126 | 356 |
| MS.gene37037.t1 | MTR_8g012330 | 85.116 | 215 | 30 | 1 | 3 | 215 | 74 | 288 | 2.75e-123 | 350 |
| MS.gene37037.t1 | MTR_4g016670 | 86.528 | 193 | 23 | 2 | 26 | 215 | 26 | 218 | 3.85e-117 | 332 |
| MS.gene37037.t1 | MTR_4g016663 | 73.494 | 83 | 21 | 1 | 134 | 215 | 5 | 87 | 7.61e-36 | 121 |
| MS.gene37037.t1 | MTR_4g016620 | 72.414 | 58 | 15 | 1 | 135 | 191 | 21 | 78 | 6.33e-21 | 84.0 |
| MS.gene37037.t1 | MTR_4g016610 | 58.242 | 91 | 12 | 2 | 125 | 215 | 1045 | 1109 | 4.45e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37037.t1 | AT5G59240 | 85.714 | 203 | 22 | 1 | 1 | 203 | 1 | 196 | 1.62e-126 | 356 |
| MS.gene37037.t1 | AT5G20290 | 80.476 | 210 | 34 | 1 | 1 | 203 | 1 | 210 | 1.00e-108 | 311 |
Find 51 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAGCTGGCGCTCTTTC+TGG | 0.081596 | 8.2:-80031840 | None:intergenic |
| CACCCTTGCCCTTCTTCTTC+TGG | 0.129125 | 8.2:-80032075 | None:intergenic |
| CAACACTATGGTGTTGATAT+TGG | 0.287835 | 8.2:+80031237 | MS.gene37037:CDS |
| TGTGAAGAGTGCTATTGTTC+AGG | 0.325462 | 8.2:+80031182 | MS.gene37037:CDS |
| AGTTCGCACCAACTCATTGT+TGG | 0.421739 | 8.2:-80031151 | None:intergenic |
| ACTTCCCCATGAGAAGTTAC+CGG | 0.438688 | 8.2:-80031079 | None:intergenic |
| ATACGCAGCTACATTCTTGA+AGG | 0.447637 | 8.2:+80032022 | MS.gene37037:intron |
| GTGAGGAGGATTCGTGTTAG+AGG | 0.449573 | 8.2:+80031021 | MS.gene37037:CDS |
| TGTAAACCACATCGAGCAAA+CGG | 0.457912 | 8.2:-80031122 | None:intergenic |
| CAATGGTACCTTCAACACTA+TGG | 0.459815 | 8.2:+80031225 | MS.gene37037:CDS |
| GGTCAATGCGGCAGAGCTGA+TGG | 0.461383 | 8.2:+80031922 | MS.gene37037:CDS |
| ATGCACAAGAGACGTGAAAC+TGG | 0.464049 | 8.2:+80030090 | MS.gene37037:CDS |
| CCTCAATGTGGGCATCAAGC+TGG | 0.484443 | 8.2:-80031852 | None:intergenic |
| TTGAAGGTACCATTGCTTGA+AGG | 0.488302 | 8.2:-80031217 | None:intergenic |
| GCATGCATTTCTTCTCGACC+TGG | 0.488891 | 8.2:+80031901 | MS.gene37037:CDS |
| TATCAACACCATAGTGTTGA+AGG | 0.489500 | 8.2:-80031233 | None:intergenic |
| GAAGTGGAGAGCTTTGAGAT+TGG | 0.494282 | 8.2:+80031053 | MS.gene37037:CDS |
| TCAGCTCTGCCGCATTGACC+AGG | 0.506358 | 8.2:-80031919 | None:intergenic |
| CAGCTACATTCTTGAAGGTA+AGG | 0.509801 | 8.2:+80032027 | MS.gene37037:intron |
| ATTGAGGAGCAGTTTGGTGG+TGG | 0.510507 | 8.2:+80031868 | MS.gene37037:CDS |
| TGAAGGTACCATTGCTTGAA+GGG | 0.514607 | 8.2:-80031216 | None:intergenic |
| GCCCACATTGAGGAGCAGTT+TGG | 0.515176 | 8.2:+80031862 | MS.gene37037:CDS |
| TGGATACCGGTAACTTCTCA+TGG | 0.515609 | 8.2:+80031073 | MS.gene37037:CDS |
| CAAAACCCGTTTGCTCGATG+TGG | 0.521241 | 8.2:+80031116 | MS.gene37037:CDS |
| CAATGCTTCCAACAATGAGT+TGG | 0.525534 | 8.2:+80031143 | MS.gene37037:CDS |
| CACATTGAGGAGCAGTTTGG+TGG | 0.527285 | 8.2:+80031865 | MS.gene37037:CDS |
| GAAGAAACTCCAGAAGAAGA+AGG | 0.530638 | 8.2:+80032066 | MS.gene37037:CDS |
| GTAAACCACATCGAGCAAAC+GGG | 0.544170 | 8.2:-80031121 | None:intergenic |
| CCAGCTTGATGCCCACATTG+AGG | 0.548092 | 8.2:+80031852 | MS.gene37037:CDS |
| AGGAGGATTCGTGTTAGAGG+TGG | 0.553665 | 8.2:+80031024 | MS.gene37037:CDS |
| TCGGCAATTACAGGAGGCTG+AGG | 0.564513 | 8.2:+80031762 | MS.gene37037:intron |
| ATGCTGCTCCCTTCAAGCAA+TGG | 0.568267 | 8.2:+80031208 | MS.gene37037:CDS |
| CTCCAGAAGAAGAAGGGCAA+GGG | 0.571076 | 8.2:+80032073 | MS.gene37037:CDS |
| GGATACCGGTAACTTCTCAT+GGG | 0.577966 | 8.2:+80031074 | MS.gene37037:CDS |
| GTCAATGCGGCAGAGCTGAT+GGG | 0.580186 | 8.2:+80031923 | MS.gene37037:CDS |
| AAGAAACTCCAGAAGAAGAA+GGG | 0.596297 | 8.2:+80032067 | MS.gene37037:CDS |
| ACCAAACTGCTCCTCAATGT+GGG | 0.596753 | 8.2:-80031863 | None:intergenic |
| AAATGTTAGCAAGAAAGAGG+AGG | 0.606920 | 8.2:+80031272 | MS.gene37037:CDS |
| CTGGTGGCAAGAAGAAAGCA+TGG | 0.611110 | 8.2:+80030109 | MS.gene37037:CDS |
| GTTTCATCTAGGTACGAGCT+CGG | 0.613407 | 8.2:+80030958 | MS.gene37037:intron |
| ACTCCAGAAGAAGAAGGGCA+AGG | 0.618644 | 8.2:+80032072 | MS.gene37037:CDS |
| CACCAAACTGCTCCTCAATG+TGG | 0.622269 | 8.2:-80031864 | None:intergenic |
| AGAGCTTTGAGATTGGATAC+CGG | 0.636809 | 8.2:+80031060 | MS.gene37037:CDS |
| TTAGAGGTGGAAATGTGAAG+TGG | 0.659708 | 8.2:+80031037 | MS.gene37037:CDS |
| TCTTCTCGACCTGGTCAATG+CGG | 0.660301 | 8.2:+80031910 | MS.gene37037:CDS |
| ATGGAAACAATACAATCAAG+CGG | 0.663363 | 8.2:-80032098 | None:intergenic |
| CACAAGAGACGTGAAACTGG+TGG | 0.674239 | 8.2:+80030093 | MS.gene37037:CDS |
| GATACCGGTAACTTCTCATG+GGG | 0.694944 | 8.2:+80031075 | MS.gene37037:CDS |
| CAAGCAACAAGACAGTGAGG+AGG | 0.706786 | 8.2:+80031007 | MS.gene37037:CDS |
| TATCAAGCAACAAGACAGTG+AGG | 0.731948 | 8.2:+80031004 | MS.gene37037:CDS |
| GTGGCAAGAAGAAAGCATGG+AGG | 0.807428 | 8.2:+80030112 | MS.gene37037:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTCTGATAAATAATT+AGG | + | chr8.2:80030765-80030784 | MS.gene37037:intron | 10.0% |
| !!! | ATTTTTTAACTAAGATATTT+TGG | + | chr8.2:80030933-80030952 | MS.gene37037:intron | 10.0% |
| !! | AAAATATGTATGTTTACTTT+CGG | - | chr8.2:80030628-80030647 | None:intergenic | 15.0% |
| !! | AAGTAATATGTTAATAATCT+CGG | + | chr8.2:80031743-80031762 | MS.gene37037:intron | 15.0% |
| !! | ATATAAAAAACGAGTAAAAA+AGG | - | chr8.2:80030166-80030185 | None:intergenic | 15.0% |
| !! | CATTATAATATCAAAGAAAA+CGG | - | chr8.2:80031348-80031367 | None:intergenic | 15.0% |
| !!! | CACTTTTTTTTTTTTAATGT+GGG | + | chr8.2:80030296-80030315 | MS.gene37037:intron | 15.0% |
| !!! | TCACTTTTTTTTTTTTAATG+TGG | + | chr8.2:80030295-80030314 | MS.gene37037:intron | 15.0% |
| !! | AAAACCAGTATAAAAATTGT+GGG | - | chr8.2:80031426-80031445 | None:intergenic | 20.0% |
| !! | ATAATTAGGTTATAGATCAA+TGG | + | chr8.2:80030779-80030798 | MS.gene37037:intron | 20.0% |
| !! | ATAATTATAGCCAAAAGATA+AGG | - | chr8.2:80030676-80030695 | None:intergenic | 20.0% |
| !! | GTATTATTTAATCCTGAAAT+GGG | + | chr8.2:80030525-80030544 | MS.gene37037:intron | 20.0% |
| !! | TAATTATAGCCAAAAGATAA+GGG | - | chr8.2:80030675-80030694 | None:intergenic | 20.0% |
| !! | TATTATTTAATCCTGAAATG+GGG | + | chr8.2:80030526-80030545 | MS.gene37037:intron | 20.0% |
| !! | TCTCAATGTTATTATTTGTT+GGG | + | chr8.2:80030894-80030913 | MS.gene37037:intron | 20.0% |
| !! | TTGAATATGAAAAAATGCAT+AGG | - | chr8.2:80030011-80030030 | None:intergenic | 20.0% |
| !! | TTGGTTGTTTAAATGTTATT+TGG | + | chr8.2:80031444-80031463 | MS.gene37037:intron | 20.0% |
| !! | TTTATATATAATGTGGGAAT+TGG | + | chr8.2:80030338-80030357 | MS.gene37037:intron | 20.0% |
| !!! | AGTTTACATTTCTATTTTCT+AGG | + | chr8.2:80030717-80030736 | MS.gene37037:intron | 20.0% |
| !!! | ATTAATTTAAGCTGTTTTGT+TGG | + | chr8.2:80031567-80031586 | MS.gene37037:intron | 20.0% |
| !!! | TTTATTCATCTGAAATTTTG+TGG | + | chr8.2:80031592-80031611 | MS.gene37037:intron | 20.0% |
| !!! | TTTTTTTTTTTTAATGTGGG+TGG | + | chr8.2:80030299-80030318 | MS.gene37037:intron | 20.0% |
| ! | CAAAACCAGTATAAAAATTG+TGG | - | chr8.2:80031427-80031446 | None:intergenic | 25.0% |
| ! | CGTATTATTTAATCCTGAAA+TGG | + | chr8.2:80030524-80030543 | MS.gene37037:intron | 25.0% |
| ! | GTATTCAAGGAAAAAAAGTT+AGG | - | chr8.2:80032006-80032025 | None:intergenic | 25.0% |
| ! | GTCTCAATGTTATTATTTGT+TGG | + | chr8.2:80030893-80030912 | MS.gene37037:intron | 25.0% |
| ! | TATTCCTTAGTAATATGTTC+AGG | + | chr8.2:80031719-80031738 | MS.gene37037:intron | 25.0% |
| ! | TCAATTTCAACATATACATG+AGG | - | chr8.2:80031660-80031679 | None:intergenic | 25.0% |
| ! | TTAAAGATCAGTTAATCACT+TGG | + | chr8.2:80031375-80031394 | MS.gene37037:intron | 25.0% |
| ! | TTGGGGTTTATATATAATGT+GGG | + | chr8.2:80030332-80030351 | MS.gene37037:intron | 25.0% |
| !! | ATTTCATTTCCCTTATCTTT+TGG | + | chr8.2:80030663-80030682 | MS.gene37037:intron | 25.0% |
| !! | GTTTAAATGTTATTTGGCTT+GGG | + | chr8.2:80031450-80031469 | MS.gene37037:intron | 25.0% |
| !! | TGTTTAAATGTTATTTGGCT+TGG | + | chr8.2:80031449-80031468 | MS.gene37037:intron | 25.0% |
| !! | TTTGGGGTTTATATATAATG+TGG | + | chr8.2:80030331-80030350 | MS.gene37037:intron | 25.0% |
| !!! | ATATTTTGGTTGTTTCATCT+AGG | + | chr8.2:80030947-80030966 | MS.gene37037:intron | 25.0% |
| !!! | CACAATTTTTATACTGGTTT+TGG | + | chr8.2:80031425-80031444 | MS.gene37037:intron | 25.0% |
| !!! | CAGTGTTAGTTTATAGATTT+TGG | + | chr8.2:80030409-80030428 | MS.gene37037:intron | 25.0% |
| !!! | TTGTGTAATTGTTTTAGATG+TGG | + | chr8.2:80030247-80030266 | MS.gene37037:intron | 25.0% |
| AATTGTGGGCATAAGTATAA+AGG | - | chr8.2:80031412-80031431 | None:intergenic | 30.0% | |
| ATTTCAACATATACATGAGG+TGG | - | chr8.2:80031657-80031676 | None:intergenic | 30.0% | |
| CTTTCCTGAACATATTACTA+AGG | - | chr8.2:80031726-80031745 | None:intergenic | 30.0% | |
| GAAAAATGTTAGCAAGAAAG+AGG | + | chr8.2:80031269-80031288 | MS.gene37037:CDS | 30.0% | |
| GTTGATTGAACAAGATTAGA+AGG | - | chr8.2:80029981-80030000 | None:intergenic | 30.0% | |
| TTAATAATCTCGGCAATTAC+AGG | + | chr8.2:80031753-80031772 | MS.gene37037:intron | 30.0% | |
| ! | TATGCCCACAATTTTTATAC+TGG | + | chr8.2:80031419-80031438 | MS.gene37037:intron | 30.0% |
| !! | TAGGATAGTTATTTTGTACC+AGG | + | chr8.2:80030736-80030755 | MS.gene37037:intron | 30.0% |
| !!! | GATTGTTGATTTTGAATCTC+AGG | + | chr8.2:80030051-80030070 | MS.gene37037:intron | 30.0% |
| !!! | TAGTTTTAGATGTCTGGATA+AGG | + | chr8.2:80031618-80031637 | MS.gene37037:intron | 30.0% |
| !!! | TGGATTTAGTTTTAGATGTC+TGG | + | chr8.2:80031612-80031631 | MS.gene37037:intron | 30.0% |
| !!! | TGTAATTGTTTTAGATGTGG+TGG | + | chr8.2:80030250-80030269 | MS.gene37037:intron | 30.0% |
| AAATGTTAGCAAGAAAGAGG+AGG | + | chr8.2:80031272-80031291 | MS.gene37037:CDS | 35.0% | |
| AAGAAACTCCAGAAGAAGAA+GGG | + | chr8.2:80032067-80032086 | MS.gene37037:CDS | 35.0% | |
| ATCAGAAAATATGTGCTACC+TGG | - | chr8.2:80030757-80030776 | None:intergenic | 35.0% | |
| GAAAGAGGAGGTAATGTTTA+TGG | + | chr8.2:80031284-80031303 | MS.gene37037:intron | 35.0% | |
| GATTTGTGTGTTGAGATTCT+CGG | + | chr8.2:80030205-80030224 | MS.gene37037:intron | 35.0% | |
| ! | CTCTAATTTTCTCTGCACAT+GGG | - | chr8.2:80031815-80031834 | None:intergenic | 35.0% |
| ! | TATCAACACCATAGTGTTGA+AGG | - | chr8.2:80031236-80031255 | None:intergenic | 35.0% |
| !! | CAACACTATGGTGTTGATAT+TGG | + | chr8.2:80031237-80031256 | MS.gene37037:CDS | 35.0% |
| !! | GTGGGTGGTTATTTGATTTT+GGG | + | chr8.2:80030314-80030333 | MS.gene37037:intron | 35.0% |
| !! | TGGGTGGTTATTTGATTTTG+GGG | + | chr8.2:80030315-80030334 | MS.gene37037:intron | 35.0% |
| !! | TGTGGGTGGTTATTTGATTT+TGG | + | chr8.2:80030313-80030332 | MS.gene37037:intron | 35.0% |
| !!! | CTTGATAGTTTTGTGTTAGC+TGG | - | chr8.2:80030991-80031010 | None:intergenic | 35.0% |
| AAATCTTCGTACCCCATTTC+AGG | - | chr8.2:80030540-80030559 | None:intergenic | 40.0% | |
| AGAATGTAGCTGCGTATTCA+AGG | - | chr8.2:80032019-80032038 | None:intergenic | 40.0% | |
| ATAATCTCGGCAATTACAGG+AGG | + | chr8.2:80031756-80031775 | MS.gene37037:intron | 40.0% | |
| ATACGCAGCTACATTCTTGA+AGG | + | chr8.2:80032022-80032041 | MS.gene37037:intron | 40.0% | |
| CAATGCTTCCAACAATGAGT+TGG | + | chr8.2:80031143-80031162 | MS.gene37037:CDS | 40.0% | |
| CAATGGTACCTTCAACACTA+TGG | + | chr8.2:80031225-80031244 | MS.gene37037:CDS | 40.0% | |
| CAGCTACATTCTTGAAGGTA+AGG | + | chr8.2:80032027-80032046 | MS.gene37037:intron | 40.0% | |
| GAAGAAACTCCAGAAGAAGA+AGG | + | chr8.2:80032066-80032085 | MS.gene37037:CDS | 40.0% | |
| TATCAAGCAACAAGACAGTG+AGG | + | chr8.2:80031004-80031023 | MS.gene37037:CDS | 40.0% | |
| TGTAAACCACATCGAGCAAA+CGG | - | chr8.2:80031125-80031144 | None:intergenic | 40.0% | |
| TTAGAGGTGGAAATGTGAAG+TGG | + | chr8.2:80031037-80031056 | MS.gene37037:CDS | 40.0% | |
| ! | GCTCTAATTTTCTCTGCACA+TGG | - | chr8.2:80031816-80031835 | None:intergenic | 40.0% |
| !! | AGAGCTTTGAGATTGGATAC+CGG | + | chr8.2:80031060-80031079 | MS.gene37037:CDS | 40.0% |
| !! | TGAAGGTACCATTGCTTGAA+GGG | - | chr8.2:80031219-80031238 | None:intergenic | 40.0% |
| !! | TGTGAAGAGTGCTATTGTTC+AGG | + | chr8.2:80031182-80031201 | MS.gene37037:CDS | 40.0% |
| !! | TTGAAGGTACCATTGCTTGA+AGG | - | chr8.2:80031220-80031239 | None:intergenic | 40.0% |
| !!! | ATAGTTTTGTGTTAGCTGGC+TGG | - | chr8.2:80030987-80031006 | None:intergenic | 40.0% |
| ACCAAACTGCTCCTCAATGT+GGG | - | chr8.2:80031866-80031885 | None:intergenic | 45.0% | |
| ACTTCCCCATGAGAAGTTAC+CGG | - | chr8.2:80031082-80031101 | None:intergenic | 45.0% | |
| AGTTCGCACCAACTCATTGT+TGG | - | chr8.2:80031154-80031173 | None:intergenic | 45.0% | |
| ATGCACAAGAGACGTGAAAC+TGG | + | chr8.2:80030090-80030109 | MS.gene37037:CDS | 45.0% | |
| CGCACATGAATGTCTGAACT+GGG | + | chr8.2:80030870-80030889 | MS.gene37037:intron | 45.0% | |
| GACATTCATGTGCGAAGCAT+AGG | - | chr8.2:80030864-80030883 | None:intergenic | 45.0% | |
| GATACCGGTAACTTCTCATG+GGG | + | chr8.2:80031075-80031094 | MS.gene37037:CDS | 45.0% | |
| GCACATGAATGTCTGAACTG+GGG | + | chr8.2:80030871-80030890 | MS.gene37037:intron | 45.0% | |
| GGATACCGGTAACTTCTCAT+GGG | + | chr8.2:80031074-80031093 | MS.gene37037:CDS | 45.0% | |
| GTAAACCACATCGAGCAAAC+GGG | - | chr8.2:80031124-80031143 | None:intergenic | 45.0% | |
| GTTTCATCTAGGTACGAGCT+CGG | + | chr8.2:80030958-80030977 | MS.gene37037:intron | 45.0% | |
| TCGCACATGAATGTCTGAAC+TGG | + | chr8.2:80030869-80030888 | MS.gene37037:intron | 45.0% | |
| TGGATACCGGTAACTTCTCA+TGG | + | chr8.2:80031073-80031092 | MS.gene37037:CDS | 45.0% | |
| !! | GAAGTGGAGAGCTTTGAGAT+TGG | + | chr8.2:80031053-80031072 | MS.gene37037:CDS | 45.0% |
| !!! | TTTTATATATATAATGAAAT+TGG | + | chr8.2:80030178-80030197 | MS.gene37037:intron | 5.0% |
| !!! | TTTTATTTTATTTTCTTATA+AGG | + | chr8.2:80030589-80030608 | MS.gene37037:intron | 5.0% |
| ACTCCAGAAGAAGAAGGGCA+AGG | + | chr8.2:80032072-80032091 | MS.gene37037:CDS | 50.0% | |
| AGGAGGATTCGTGTTAGAGG+TGG | + | chr8.2:80031024-80031043 | MS.gene37037:CDS | 50.0% | |
| ATGCTGCTCCCTTCAAGCAA+TGG | + | chr8.2:80031208-80031227 | MS.gene37037:CDS | 50.0% | |
| CAAAACCCGTTTGCTCGATG+TGG | + | chr8.2:80031116-80031135 | MS.gene37037:CDS | 50.0% | |
| CAAGCAACAAGACAGTGAGG+AGG | + | chr8.2:80031007-80031026 | MS.gene37037:CDS | 50.0% | |
| CACAAGAGACGTGAAACTGG+TGG | + | chr8.2:80030093-80030112 | MS.gene37037:CDS | 50.0% | |
| CACATTGAGGAGCAGTTTGG+TGG | + | chr8.2:80031865-80031884 | MS.gene37037:CDS | 50.0% | |
| CACCAAACTGCTCCTCAATG+TGG | - | chr8.2:80031867-80031886 | None:intergenic | 50.0% | |
| CTCCAGAAGAAGAAGGGCAA+GGG | + | chr8.2:80032073-80032092 | MS.gene37037:CDS | 50.0% | |
| CTGGTGGCAAGAAGAAAGCA+TGG | + | chr8.2:80030109-80030128 | MS.gene37037:CDS | 50.0% | |
| GCATGCATTTCTTCTCGACC+TGG | + | chr8.2:80031901-80031920 | MS.gene37037:CDS | 50.0% | |
| GTGAGGAGGATTCGTGTTAG+AGG | + | chr8.2:80031021-80031040 | MS.gene37037:CDS | 50.0% | |
| TCTTCTCGACCTGGTCAATG+CGG | + | chr8.2:80031910-80031929 | MS.gene37037:CDS | 50.0% | |
| ! | ATTGAGGAGCAGTTTGGTGG+TGG | + | chr8.2:80031868-80031887 | MS.gene37037:CDS | 50.0% |
| ! | GTGGCAAGAAGAAAGCATGG+AGG | + | chr8.2:80030112-80030131 | MS.gene37037:CDS | 50.0% |
| CACCCTTGCCCTTCTTCTTC+TGG | - | chr8.2:80032078-80032097 | None:intergenic | 55.0% | |
| CATCAAGCTGGCGCTCTTTC+TGG | - | chr8.2:80031843-80031862 | None:intergenic | 55.0% | |
| CCAGCTTGATGCCCACATTG+AGG | + | chr8.2:80031852-80031871 | MS.gene37037:CDS | 55.0% | |
| CCTCAATGTGGGCATCAAGC+TGG | - | chr8.2:80031855-80031874 | None:intergenic | 55.0% | |
| GCCCACATTGAGGAGCAGTT+TGG | + | chr8.2:80031862-80031881 | MS.gene37037:CDS | 55.0% | |
| GTCAATGCGGCAGAGCTGAT+GGG | + | chr8.2:80031923-80031942 | MS.gene37037:CDS | 55.0% | |
| TCGGCAATTACAGGAGGCTG+AGG | + | chr8.2:80031762-80031781 | MS.gene37037:intron | 55.0% | |
| GGTCAATGCGGCAGAGCTGA+TGG | + | chr8.2:80031922-80031941 | MS.gene37037:CDS | 60.0% | |
| ! | TCAGCTCTGCCGCATTGACC+AGG | - | chr8.2:80031922-80031941 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 80029965 | 80032105 | 80029965 | ID=MS.gene37037 |
| chr8.2 | mRNA | 80029965 | 80032105 | 80029965 | ID=MS.gene37037.t1;Parent=MS.gene37037 |
| chr8.2 | exon | 80029965 | 80029968 | 80029965 | ID=MS.gene37037.t1.exon1;Parent=MS.gene37037.t1 |
| chr8.2 | CDS | 80029965 | 80029968 | 80029965 | ID=cds.MS.gene37037.t1;Parent=MS.gene37037.t1 |
| chr8.2 | exon | 80030073 | 80030145 | 80030073 | ID=MS.gene37037.t1.exon2;Parent=MS.gene37037.t1 |
| chr8.2 | CDS | 80030073 | 80030145 | 80030073 | ID=cds.MS.gene37037.t1;Parent=MS.gene37037.t1 |
| chr8.2 | exon | 80030969 | 80031293 | 80030969 | ID=MS.gene37037.t1.exon3;Parent=MS.gene37037.t1 |
| chr8.2 | CDS | 80030969 | 80031293 | 80030969 | ID=cds.MS.gene37037.t1;Parent=MS.gene37037.t1 |
| chr8.2 | exon | 80031775 | 80031944 | 80031775 | ID=MS.gene37037.t1.exon4;Parent=MS.gene37037.t1 |
| chr8.2 | CDS | 80031775 | 80031944 | 80031775 | ID=cds.MS.gene37037.t1;Parent=MS.gene37037.t1 |
| chr8.2 | exon | 80032030 | 80032105 | 80032030 | ID=MS.gene37037.t1.exon5;Parent=MS.gene37037.t1 |
| chr8.2 | CDS | 80032030 | 80032105 | 80032030 | ID=cds.MS.gene37037.t1;Parent=MS.gene37037.t1 |
| Gene Sequence |
| Protein sequence |
